0.010197
0.005887
0.000000
0.000000
0.011774
0.000000
0.000000
0.000000
0.004917
0.000000
0.000000
0.000000
Kirouac, K.N.
Ling, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.000
90.000
120.000
98.070
98.070
203.380
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H16 N5 O13 P3
507.181
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
non-polymer
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
P
N
196
N
O
N
197
N
O
N
198
N
O
N
199
N
O
N
200
S
P
N
201
N
O
N
202
N
O
N
203
N
O
N
204
R
P
N
205
N
O
N
206
N
O
N
207
N
O
N
208
N
C
N
209
R
C
N
210
N
O
N
211
S
C
N
212
N
O
N
213
N
C
N
214
R
C
Y
215
N
N
Y
216
N
C
Y
217
N
N
Y
218
N
C
N
219
N
C
N
220
N
O
N
221
N
N
N
222
N
C
N
223
N
N
N
224
N
N
Y
225
N
C
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
O
N
243
N
P
N
244
N
O
N
245
N
O
N
246
N
O
N
247
N
C
N
248
R
C
N
249
N
O
N
250
S
C
N
251
N
O
N
252
N
C
N
253
R
C
N
254
N
N
N
255
N
C
N
256
N
O
N
257
N
N
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
O
N
286
N
N
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
N
C
N
319
N
C
N
320
N
O
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
N
Y
334
N
C
Y
335
N
C
Y
336
N
N
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
S
C
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
N
400
N
C
N
401
N
C
N
402
N
C
N
403
N
N
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
N
425
N
C
N
426
N
S
N
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
MG
N
441
N
N
N
442
S
C
N
443
N
C
N
444
N
O
N
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
C
N
452
N
O
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
N
469
N
C
N
470
N
C
N
471
N
O
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
N
N
482
S
C
N
483
N
C
N
484
N
O
N
485
N
C
N
486
N
O
N
487
N
O
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
N
N
496
S
C
N
497
N
C
N
498
N
O
N
499
R
C
N
500
N
O
N
501
N
C
N
502
N
O
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
N
N
513
S
C
N
514
N
C
N
515
N
O
N
516
N
C
Y
517
N
C
Y
518
N
C
Y
519
N
C
Y
520
N
C
Y
521
N
C
Y
522
N
C
N
523
N
O
N
524
N
O
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
N
N
537
S
C
N
538
N
C
N
539
N
O
N
540
N
C
N
541
N
C
N
542
N
C
N
543
N
O
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
Y
228
N
sing
Y
229
N
sing
N
230
N
sing
Y
231
N
doub
Y
232
N
sing
N
233
N
sing
Y
234
N
doub
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
sing
Y
339
N
doub
Y
340
N
doub
N
341
N
sing
Y
342
N
sing
N
343
N
sing
Y
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
doub
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
Y
446
N
doub
Y
447
N
sing
Y
448
N
sing
N
449
N
sing
Y
450
N
doub
N
451
N
sing
Y
452
N
doub
N
453
N
sing
Y
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
doub
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
doub
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
doub
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
doub
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
Y
515
N
doub
Y
516
N
sing
Y
517
N
sing
N
518
N
sing
Y
519
N
doub
N
520
N
sing
Y
521
N
doub
N
522
N
sing
Y
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
doub
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
UK
Embo J.
EMJODG
0897
0261-4189
28
1644
1654
10.1038/emboj.2009.122
19440206
Structural basis of error-prone replication and stalling at a thymine base by human DNA polymerase iota
2009
10.2210/pdb3gv8/pdb
pdb_00003gv8
1
2008-03-07
SINGLE WAVELENGTH
M
x-ray
1
1.0
24-ID-C
APS
SYNCHROTRON
APS BEAMLINE 24-ID-C
47027.344
DNA polymerase iota
2.7.7.7
1
man
polymer
2746.809
5'-D(*AP*TP*GP*GP*GP*TP*CP*CP*T)-3'
1
syn
polymer
2107.413
5'-D(*AP*GP*GP*AP*CP*CP*C)-3'
1
syn
polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
507.181
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
1
syn
non-polymer
18.015
water
240
nat
water
RAD30 homolog B, Eta2
no
no
MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMN
VRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNN
QSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIP
GIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNK
IEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMP
FHLTLLSVCFCNLKALNTAK
MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMN
VRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNN
QSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIP
GIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNK
IEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMP
FHLTLLSVCFCNLKALNTAK
B
polypeptide(L)
no
no
(DA)(DT)(DG)(DG)(DG)(DT)(DC)(DC)(DT)
ATGGGTCCT
T
polydeoxyribonucleotide
no
no
(DA)(DG)(DG)(DA)(DC)(DC)(DC)
AGGACCC
P
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
POLI, RAD30B
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)
plasmid
pGST-parrallel1
1
2.72
54.79
hanging drop
6.5
15% PEG 5000MME, 0.2M NH4SO4, 0.1M MES 6.5, 5% glycerol, hanging drop
1.189
1
19
T
841
P
873
-0.513
T_DG841:DC873_P
1
-0.353
-0.372
-0.123
-0.239
-5.990
1
19
T
842
P
872
-0.954
T_DG842:DC872_P
2
-12.131
-0.064
-0.021
-0.090
-12.002
1
19
T
843
P
871
1.613
T_DG843:DC871_P
3
-16.869
-0.218
-0.082
-0.122
-8.816
1
20
T
844
P
870
-0.540
T_DT844:DA870_P
4
-11.781
-0.069
0.120
-0.154
3.035
1
19
T
845
P
869
1.216
T_DC845:DG869_P
5
-7.376
0.128
-0.183
-0.139
-4.040
1
19
T
846
P
868
0.302
T_DC846:DG868_P
6
-5.400
0.205
0.202
-0.145
-6.492
1
20
T
847
P
867
-0.050
T_DT847:DA867_P
7
-7.880
-0.146
0.057
-0.150
3.247
24.592
T
T
841
842
9.178
P
P
873
872
3.558
3.891
0.619
-1.450
TT_DG841DG842:DC872DC873_PP
1
-1.428
3.369
24.245
-4.659
-1.914
2.842
31.652
T
T
842
843
17.764
P
P
872
871
3.467
9.533
0.533
-1.713
TT_DG842DG843:DC871DC872_PP
2
2.793
-5.205
30.090
-4.884
-0.467
3.150
34.554
T
T
843
844
4.154
P
P
871
870
3.224
2.465
-0.624
-1.166
TT_DG843DT844:DA870DC871_PP
3
-0.884
1.489
34.458
-2.335
0.918
2.948
31.579
T
T
844
845
7.618
P
P
870
869
3.050
4.128
0.033
-0.516
TT_DT844DC845:DG869DA870_PP
4
3.165
-5.842
31.158
-1.655
0.482
3.467
36.607
T
T
845
846
3.503
P
P
869
868
3.514
2.197
-0.159
-0.748
TT_DC845DC846:DG868DG869_PP
5
-2.916
4.650
36.431
-1.513
-0.176
3.357
31.658
T
T
846
847
-1.407
P
P
868
867
3.382
-0.767
-0.552
-0.615
TT_DC846DT847:DA867DG868_PP
6
1.912
-3.507
31.593
-0.981
1.375
software
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_site
repository
Initial release
Advisory
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2009-06-02
1
1
2011-07-13
1
2
2017-11-01
1
3
2024-02-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2009-03-30
REL
REL
MG
MAGNESIUM ION
DGT
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
HOH
water
MG
871
4
MG
MG
871
B
DGT
1
5
DGT
DGT
421
B
MG
1
4
MG
MG
422
B
HOH
1
6
HOH
HOH
423
B
HOH
3
6
HOH
HOH
424
B
HOH
4
6
HOH
HOH
425
B
HOH
5
6
HOH
HOH
426
B
HOH
6
6
HOH
HOH
427
B
HOH
7
6
HOH
HOH
428
B
HOH
8
6
HOH
HOH
429
B
HOH
9
6
HOH
HOH
430
B
HOH
10
6
HOH
HOH
431
B
HOH
11
6
HOH
HOH
432
B
HOH
12
6
HOH
HOH
433
B
HOH
14
6
HOH
HOH
434
B
HOH
15
6
HOH
HOH
435
B
HOH
16
6
HOH
HOH
436
B
HOH
17
6
HOH
HOH
437
B
HOH
18
6
HOH
HOH
438
B
HOH
20
6
HOH
HOH
439
B
HOH
21
6
HOH
HOH
440
B
HOH
22
6
HOH
HOH
441
B
HOH
23
6
HOH
HOH
442
B
HOH
24
6
HOH
HOH
443
B
HOH
26
6
HOH
HOH
444
B
HOH
27
6
HOH
HOH
445
B
HOH
28
6
HOH
HOH
446
B
HOH
29
6
HOH
HOH
447
B
HOH
30
6
HOH
HOH
448
B
HOH
31
6
HOH
HOH
449
B
HOH
32
6
HOH
HOH
450
B
HOH
33
6
HOH
HOH
451
B
HOH
35
6
HOH
HOH
452
B
HOH
37
6
HOH
HOH
453
B
HOH
39
6
HOH
HOH
454
B
HOH
40
6
HOH
HOH
455
B
HOH
41
6
HOH
HOH
456
B
HOH
42
6
HOH
HOH
457
B
HOH
43
6
HOH
HOH
458
B
HOH
44
6
HOH
HOH
459
B
HOH
45
6
HOH
HOH
460
B
HOH
46
6
HOH
HOH
461
B
HOH
47
6
HOH
HOH
462
B
HOH
48
6
HOH
HOH
463
B
HOH
49
6
HOH
HOH
464
B
HOH
51
6
HOH
HOH
465
B
HOH
52
6
HOH
HOH
466
B
HOH
53
6
HOH
HOH
467
B
HOH
55
6
HOH
HOH
468
B
HOH
56
6
HOH
HOH
469
B
HOH
57
6
HOH
HOH
470
B
HOH
58
6
HOH
HOH
471
B
HOH
61
6
HOH
HOH
472
B
HOH
62
6
HOH
HOH
473
B
HOH
63
6
HOH
HOH
474
B
HOH
64
6
HOH
HOH
475
B
HOH
66
6
HOH
HOH
476
B
HOH
67
6
HOH
HOH
477
B
HOH
68
6
HOH
HOH
478
B
HOH
69
6
HOH
HOH
479
B
HOH
70
6
HOH
HOH
480
B
HOH
71
6
HOH
HOH
481
B
HOH
73
6
HOH
HOH
482
B
HOH
75
6
HOH
HOH
483
B
HOH
76
6
HOH
HOH
484
B
HOH
77
6
HOH
HOH
485
B
HOH
78
6
HOH
HOH
486
B
HOH
79
6
HOH
HOH
487
B
HOH
80
6
HOH
HOH
488
B
HOH
81
6
HOH
HOH
489
B
HOH
82
6
HOH
HOH
490
B
HOH
83
6
HOH
HOH
491
B
HOH
84
6
HOH
HOH
492
B
HOH
85
6
HOH
HOH
493
B
HOH
86
6
HOH
HOH
494
B
HOH
87
6
HOH
HOH
495
B
HOH
88
6
HOH
HOH
496
B
HOH
89
6
HOH
HOH
497
B
HOH
90
6
HOH
HOH
498
B
HOH
91
6
HOH
HOH
499
B
HOH
92
6
HOH
HOH
500
B
HOH
93
6
HOH
HOH
501
B
HOH
94
6
HOH
HOH
502
B
HOH
95
6
HOH
HOH
503
B
HOH
97
6
HOH
HOH
504
B
HOH
98
6
HOH
HOH
505
B
HOH
99
6
HOH
HOH
506
B
HOH
101
6
HOH
HOH
507
B
HOH
102
6
HOH
HOH
508
B
HOH
104
6
HOH
HOH
509
B
HOH
105
6
HOH
HOH
510
B
HOH
107
6
HOH
HOH
511
B
HOH
109
6
HOH
HOH
512
B
HOH
110
6
HOH
HOH
513
B
HOH
111
6
HOH
HOH
514
B
HOH
112
6
HOH
HOH
515
B
HOH
113
6
HOH
HOH
516
B
HOH
114
6
HOH
HOH
517
B
HOH
116
6
HOH
HOH
518
B
HOH
118
6
HOH
HOH
519
B
HOH
119
6
HOH
HOH
520
B
HOH
120
6
HOH
HOH
521
B
HOH
121
6
HOH
HOH
522
B
HOH
122
6
HOH
HOH
523
B
HOH
123
6
HOH
HOH
524
B
HOH
124
6
HOH
HOH
525
B
HOH
125
6
HOH
HOH
526
B
HOH
126
6
HOH
HOH
527
B
HOH
129
6
HOH
HOH
528
B
HOH
130
6
HOH
HOH
529
B
HOH
131
6
HOH
HOH
530
B
HOH
132
6
HOH
HOH
531
B
HOH
133
6
HOH
HOH
532
B
HOH
134
6
HOH
HOH
533
B
HOH
135
6
HOH
HOH
534
B
HOH
136
6
HOH
HOH
535
B
HOH
137
6
HOH
HOH
536
B
HOH
138
6
HOH
HOH
537
B
HOH
140
6
HOH
HOH
538
B
HOH
141
6
HOH
HOH
539
B
HOH
143
6
HOH
HOH
540
B
HOH
144
6
HOH
HOH
541
B
HOH
145
6
HOH
HOH
542
B
HOH
147
6
HOH
HOH
543
B
HOH
148
6
HOH
HOH
544
B
HOH
149
6
HOH
HOH
545
B
HOH
150
6
HOH
HOH
546
B
HOH
151
6
HOH
HOH
547
B
HOH
152
6
HOH
HOH
548
B
HOH
154
6
HOH
HOH
549
B
HOH
155
6
HOH
HOH
550
B
HOH
156
6
HOH
HOH
551
B
HOH
157
6
HOH
HOH
552
B
HOH
158
6
HOH
HOH
553
B
HOH
159
6
HOH
HOH
554
B
HOH
160
6
HOH
HOH
555
B
HOH
162
6
HOH
HOH
556
B
HOH
163
6
HOH
HOH
557
B
HOH
165
6
HOH
HOH
558
B
HOH
168
6
HOH
HOH
559
B
HOH
169
6
HOH
HOH
560
B
HOH
170
6
HOH
HOH
561
B
HOH
172
6
HOH
HOH
562
B
HOH
173
6
HOH
HOH
563
B
HOH
174
6
HOH
HOH
564
B
HOH
175
6
HOH
HOH
565
B
HOH
176
6
HOH
HOH
566
B
HOH
177
6
HOH
HOH
567
B
HOH
179
6
HOH
HOH
568
B
HOH
180
6
HOH
HOH
569
B
HOH
181
6
HOH
HOH
570
B
HOH
182
6
HOH
HOH
571
B
HOH
183
6
HOH
HOH
572
B
HOH
184
6
HOH
HOH
573
B
HOH
185
6
HOH
HOH
574
B
HOH
186
6
HOH
HOH
575
B
HOH
187
6
HOH
HOH
576
B
HOH
188
6
HOH
HOH
577
B
HOH
190
6
HOH
HOH
578
B
HOH
191
6
HOH
HOH
579
B
HOH
192
6
HOH
HOH
580
B
HOH
193
6
HOH
HOH
581
B
HOH
194
6
HOH
HOH
582
B
HOH
195
6
HOH
HOH
583
B
HOH
197
6
HOH
HOH
584
B
HOH
198
6
HOH
HOH
585
B
HOH
204
6
HOH
HOH
586
B
HOH
205
6
HOH
HOH
587
B
HOH
208
6
HOH
HOH
588
B
HOH
209
6
HOH
HOH
589
B
HOH
211
6
HOH
HOH
590
B
HOH
213
6
HOH
HOH
591
B
HOH
214
6
HOH
HOH
592
B
HOH
215
6
HOH
HOH
593
B
HOH
218
6
HOH
HOH
594
B
HOH
220
6
HOH
HOH
595
B
HOH
221
6
HOH
HOH
596
B
HOH
223
6
HOH
HOH
597
B
HOH
225
6
HOH
HOH
598
B
HOH
227
6
HOH
HOH
599
B
HOH
231
6
HOH
HOH
600
B
HOH
232
6
HOH
HOH
601
B
HOH
234
6
HOH
HOH
602
B
HOH
236
6
HOH
HOH
603
B
HOH
237
6
HOH
HOH
604
B
HOH
239
6
HOH
HOH
605
B
HOH
240
6
HOH
HOH
606
B
HOH
241
6
HOH
HOH
607
B
HOH
243
6
HOH
HOH
608
B
HOH
245
6
HOH
HOH
609
B
HOH
246
6
HOH
HOH
610
B
HOH
247
6
HOH
HOH
611
B
HOH
252
6
HOH
HOH
612
B
HOH
254
6
HOH
HOH
613
B
HOH
255
6
HOH
HOH
614
B
HOH
257
6
HOH
HOH
615
B
HOH
263
6
HOH
HOH
616
B
HOH
264
6
HOH
HOH
617
B
HOH
265
6
HOH
HOH
618
B
HOH
270
6
HOH
HOH
619
B
HOH
271
6
HOH
HOH
620
B
HOH
275
6
HOH
HOH
621
B
HOH
285
6
HOH
HOH
622
B
HOH
286
6
HOH
HOH
623
B
HOH
288
6
HOH
HOH
624
B
HOH
290
6
HOH
HOH
625
B
HOH
291
6
HOH
HOH
626
B
HOH
293
6
HOH
HOH
627
B
HOH
296
6
HOH
HOH
628
B
HOH
297
6
HOH
HOH
629
B
HOH
298
6
HOH
HOH
630
B
HOH
301
6
HOH
HOH
631
B
HOH
302
6
HOH
HOH
632
B
HOH
2
6
HOH
HOH
2
T
HOH
19
6
HOH
HOH
19
T
HOH
34
6
HOH
HOH
34
T
HOH
50
6
HOH
HOH
50
T
HOH
54
6
HOH
HOH
54
T
HOH
65
6
HOH
HOH
65
T
HOH
72
6
HOH
HOH
72
T
HOH
74
6
HOH
HOH
74
T
HOH
103
6
HOH
HOH
103
T
HOH
108
6
HOH
HOH
108
T
HOH
117
6
HOH
HOH
117
T
HOH
199
6
HOH
HOH
199
T
HOH
212
6
HOH
HOH
212
T
HOH
224
6
HOH
HOH
224
T
HOH
229
6
HOH
HOH
229
T
HOH
259
6
HOH
HOH
259
T
HOH
277
6
HOH
HOH
277
T
HOH
295
6
HOH
HOH
295
T
HOH
300
6
HOH
HOH
300
T
HOH
13
6
HOH
HOH
13
P
HOH
36
6
HOH
HOH
36
P
HOH
115
6
HOH
HOH
115
P
HOH
142
6
HOH
HOH
142
P
HOH
166
6
HOH
HOH
166
P
HOH
178
6
HOH
HOH
178
P
HOH
196
6
HOH
HOH
196
P
HOH
206
6
HOH
HOH
206
P
HOH
267
6
HOH
HOH
267
P
HOH
274
6
HOH
HOH
274
P
HOH
289
6
HOH
HOH
289
P
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
n
8
8
B
n
9
9
B
n
10
10
B
n
11
11
B
n
12
12
B
n
13
13
B
n
14
14
B
n
15
15
B
n
16
16
B
n
17
17
B
n
18
18
B
n
19
19
B
n
20
20
B
n
21
21
B
n
22
22
B
n
23
23
B
n
24
24
B
n
25
25
B
SER
26
n
26
SER
26
B
SER
27
n
27
SER
27
B
ARG
28
n
28
ARG
28
B
VAL
29
n
29
VAL
29
B
ILE
30
n
30
ILE
30
B
VAL
31
n
31
VAL
31
B
HIS
32
n
32
HIS
32
B
VAL
33
n
33
VAL
33
B
ASP
34
n
34
ASP
34
B
LEU
35
n
35
LEU
35
B
ASP
36
n
36
ASP
36
B
CYS
37
n
37
CYS
37
B
PHE
38
n
38
PHE
38
B
TYR
39
n
39
TYR
39
B
ALA
40
n
40
ALA
40
B
GLN
41
n
41
GLN
41
B
VAL
42
n
42
VAL
42
B
GLU
43
n
43
GLU
43
B
MET
44
n
44
MET
44
B
ILE
45
n
45
ILE
45
B
SER
46
n
46
SER
46
B
ASN
47
n
47
ASN
47
B
PRO
48
n
48
PRO
48
B
ALA
49
n
49
GLU
49
B
LEU
50
n
50
LEU
50
B
ALA
51
n
51
LYS
51
B
ALA
52
n
52
ASP
52
B
LYS
53
n
53
LYS
53
B
PRO
54
n
54
PRO
54
B
LEU
55
n
55
LEU
55
B
GLY
56
n
56
GLY
56
B
VAL
57
n
57
VAL
57
B
GLN
58
n
58
GLN
58
B
GLN
59
n
59
GLN
59
B
LYS
60
n
60
LYS
60
B
TYR
61
n
61
TYR
61
B
LEU
62
n
62
LEU
62
B
VAL
63
n
63
VAL
63
B
VAL
64
n
64
VAL
64
B
THR
65
n
65
THR
65
B
CYS
66
n
66
CYS
66
B
ASN
67
n
67
ASN
67
B
TYR
68
n
68
TYR
68
B
GLU
69
n
69
GLU
69
B
ALA
70
n
70
ALA
70
B
ARG
71
n
71
ARG
71
B
LYS
72
n
72
LYS
72
B
LEU
73
n
73
LEU
73
B
GLY
74
n
74
GLY
74
B
VAL
75
n
75
VAL
75
B
ALA
76
n
76
LYS
76
B
LYS
77
n
77
LYS
77
B
LEU
78
n
78
LEU
78
B
MET
79
n
79
MET
79
B
ASN
80
n
80
ASN
80
B
VAL
81
n
81
VAL
81
B
ARG
82
n
82
ARG
82
B
ASP
83
n
83
ASP
83
B
ALA
84
n
84
ALA
84
B
LYS
85
n
85
LYS
85
B
ALA
86
n
86
GLU
86
B
ALA
87
n
87
LYS
87
B
CYS
88
n
88
CYS
88
B
PRO
89
n
89
PRO
89
B
GLN
90
n
90
GLN
90
B
LEU
91
n
91
LEU
91
B
VAL
92
n
92
VAL
92
B
LEU
93
n
93
LEU
93
B
VAL
94
n
94
VAL
94
B
ASN
95
n
95
ASN
95
B
GLY
96
n
96
GLY
96
B
GLU
97
n
97
GLU
97
B
ASP
98
n
98
ASP
98
B
LEU
99
n
99
LEU
99
B
THR
100
n
100
THR
100
B
ARG
101
n
101
ARG
101
B
TYR
102
n
102
TYR
102
B
ARG
103
n
103
ARG
103
B
GLU
104
n
104
GLU
104
B
MET
105
n
105
MET
105
B
SER
106
n
106
SER
106
B
TYR
107
n
107
TYR
107
B
LYS
108
n
108
LYS
108
B
VAL
109
n
109
VAL
109
B
THR
110
n
110
THR
110
B
GLU
111
n
111
GLU
111
B
LEU
112
n
112
LEU
112
B
LEU
113
n
113
LEU
113
B
GLU
114
n
114
GLU
114
B
GLU
115
n
115
GLU
115
B
PHE
116
n
116
PHE
116
B
SER
117
n
117
SER
117
B
PRO
118
n
118
PRO
118
B
VAL
119
n
119
VAL
119
B
VAL
120
n
120
VAL
120
B
GLU
121
n
121
GLU
121
B
ARG
122
n
122
ARG
122
B
LEU
123
n
123
LEU
123
B
GLY
124
n
124
GLY
124
B
PHE
125
n
125
PHE
125
B
ASP
126
n
126
ASP
126
B
GLU
127
n
127
GLU
127
B
ASN
128
n
128
ASN
128
B
PHE
129
n
129
PHE
129
B
VAL
130
n
130
VAL
130
B
ASP
131
n
131
ASP
131
B
LEU
132
n
132
LEU
132
B
THR
133
n
133
THR
133
B
GLU
134
n
134
GLU
134
B
MET
135
n
135
MET
135
B
VAL
136
n
136
VAL
136
B
GLU
137
n
137
GLU
137
B
LYS
138
n
138
LYS
138
B
ARG
139
n
139
ARG
139
B
LEU
140
n
140
LEU
140
B
ALA
141
n
141
GLN
141
B
GLN
142
n
142
GLN
142
B
LEU
143
n
143
LEU
143
B
ALA
144
n
144
GLN
144
B
ALA
145
n
145
SER
145
B
ALA
146
n
146
ASP
146
B
GLU
147
n
147
GLU
147
B
LEU
148
n
148
LEU
148
B
SER
149
n
149
SER
149
B
ALA
150
n
150
ALA
150
B
VAL
151
n
151
VAL
151
B
THR
152
n
152
THR
152
B
VAL
153
n
153
VAL
153
B
SER
154
n
154
SER
154
B
GLY
155
n
155
GLY
155
B
HIS
156
n
156
HIS
156
B
VAL
157
n
157
VAL
157
B
TYR
158
n
158
TYR
158
B
ASN
159
n
159
ASN
159
B
ASN
160
n
160
ASN
160
B
GLN
161
n
161
GLN
161
B
SER
162
n
162
SER
162
B
ILE
163
n
163
ILE
163
B
ASN
164
n
164
ASN
164
B
LEU
165
n
165
LEU
165
B
LEU
166
n
166
LEU
166
B
ASP
167
n
167
ASP
167
B
VAL
168
n
168
VAL
168
B
LEU
169
n
169
LEU
169
B
HIS
170
n
170
HIS
170
B
ILE
171
n
171
ILE
171
B
ARG
172
n
172
ARG
172
B
LEU
173
n
173
LEU
173
B
LEU
174
n
174
LEU
174
B
VAL
175
n
175
VAL
175
B
GLY
176
n
176
GLY
176
B
SER
177
n
177
SER
177
B
GLN
178
n
178
GLN
178
B
ILE
179
n
179
ILE
179
B
ALA
180
n
180
ALA
180
B
ALA
181
n
181
ALA
181
B
GLU
182
n
182
GLU
182
B
MET
183
n
183
MET
183
B
ARG
184
n
184
ARG
184
B
GLU
185
n
185
GLU
185
B
ALA
186
n
186
ALA
186
B
MET
187
n
187
MET
187
B
TYR
188
n
188
TYR
188
B
ASN
189
n
189
ASN
189
B
GLN
190
n
190
GLN
190
B
LEU
191
n
191
LEU
191
B
GLY
192
n
192
GLY
192
B
LEU
193
n
193
LEU
193
B
THR
194
n
194
THR
194
B
GLY
195
n
195
GLY
195
B
CYS
196
n
196
CYS
196
B
ALA
197
n
197
ALA
197
B
GLY
198
n
198
GLY
198
B
VAL
199
n
199
VAL
199
B
ALA
200
n
200
ALA
200
B
SER
201
n
201
SER
201
B
ASN
202
n
202
ASN
202
B
LYS
203
n
203
LYS
203
B
LEU
204
n
204
LEU
204
B
LEU
205
n
205
LEU
205
B
ALA
206
n
206
ALA
206
B
LYS
207
n
207
LYS
207
B
LEU
208
n
208
LEU
208
B
VAL
209
n
209
VAL
209
B
SER
210
n
210
SER
210
B
GLY
211
n
211
GLY
211
B
VAL
212
n
212
VAL
212
B
PHE
213
n
213
PHE
213
B
LYS
214
n
214
LYS
214
B
PRO
215
n
215
PRO
215
B
ASN
216
n
216
ASN
216
B
GLN
217
n
217
GLN
217
B
GLN
218
n
218
GLN
218
B
THR
219
n
219
THR
219
B
VAL
220
n
220
VAL
220
B
LEU
221
n
221
LEU
221
B
LEU
222
n
222
LEU
222
B
PRO
223
n
223
PRO
223
B
GLU
224
n
224
GLU
224
B
SER
225
n
225
SER
225
B
CYS
226
n
226
CYS
226
B
GLN
227
n
227
GLN
227
B
HIS
228
n
228
HIS
228
B
LEU
229
n
229
LEU
229
B
ILE
230
n
230
ILE
230
B
HIS
231
n
231
HIS
231
B
SER
232
n
232
SER
232
B
LEU
233
n
233
LEU
233
B
ASN
234
n
234
ASN
234
B
HIS
235
n
235
HIS
235
B
ILE
236
n
236
ILE
236
B
LYS
237
n
237
LYS
237
B
GLU
238
n
238
GLU
238
B
ILE
239
n
239
ILE
239
B
PRO
240
n
240
PRO
240
B
GLY
241
n
241
GLY
241
B
ILE
242
n
242
ILE
242
B
GLY
243
n
243
GLY
243
B
TYR
244
n
244
TYR
244
B
LYS
245
n
245
LYS
245
B
THR
246
n
246
THR
246
B
ALA
247
n
247
ALA
247
B
LYS
248
n
248
LYS
248
B
CYS
249
n
249
CYS
249
B
LEU
250
n
250
LEU
250
B
GLU
251
n
251
GLU
251
B
ALA
252
n
252
ALA
252
B
LEU
253
n
253
LEU
253
B
GLY
254
n
254
GLY
254
B
ILE
255
n
255
ILE
255
B
ASN
256
n
256
ASN
256
B
SER
257
n
257
SER
257
B
VAL
258
n
258
VAL
258
B
ARG
259
n
259
ARG
259
B
ASP
260
n
260
ASP
260
B
LEU
261
n
261
LEU
261
B
GLN
262
n
262
GLN
262
B
THR
263
n
263
THR
263
B
PHE
264
n
264
PHE
264
B
SER
265
n
265
SER
265
B
PRO
266
n
266
PRO
266
B
LYS
267
n
267
LYS
267
B
ILE
268
n
268
ILE
268
B
LEU
269
n
269
LEU
269
B
GLU
270
n
270
GLU
270
B
LYS
271
n
271
LYS
271
B
GLU
272
n
272
GLU
272
B
LEU
273
n
273
LEU
273
B
GLY
274
n
274
GLY
274
B
ILE
275
n
275
ILE
275
B
SER
276
n
276
SER
276
B
VAL
277
n
277
VAL
277
B
ALA
278
n
278
ALA
278
B
GLN
279
n
279
GLN
279
B
ARG
280
n
280
ARG
280
B
ILE
281
n
281
ILE
281
B
GLN
282
n
282
GLN
282
B
LYS
283
n
283
LYS
283
B
LEU
284
n
284
LEU
284
B
SER
285
n
285
SER
285
B
PHE
286
n
286
PHE
286
B
GLY
287
n
287
GLY
287
B
GLU
288
n
288
GLU
288
B
ASP
289
n
289
ASP
289
B
ASN
290
n
290
ASN
290
B
SER
291
n
291
SER
291
B
PRO
292
n
292
PRO
292
B
VAL
293
n
293
VAL
293
B
ILE
294
n
294
ILE
294
B
LEU
295
n
295
LEU
295
B
SER
296
n
296
SER
296
B
GLY
297
n
297
GLY
297
B
PRO
298
n
298
PRO
298
B
PRO
299
n
299
PRO
299
B
GLN
300
n
300
GLN
300
B
SER
301
n
301
SER
301
B
PHE
302
n
302
PHE
302
B
SER
303
n
303
SER
303
B
GLU
304
n
304
GLU
304
B
GLU
305
n
305
GLU
305
B
ASP
306
n
306
ASP
306
B
SER
307
n
307
SER
307
B
PHE
308
n
308
PHE
308
B
LYS
309
n
309
LYS
309
B
ALA
310
n
310
LYS
310
B
CYS
311
n
311
CYS
311
B
SER
312
n
312
SER
312
B
SER
313
n
313
SER
313
B
GLU
314
n
314
GLU
314
B
VAL
315
n
315
VAL
315
B
GLU
316
n
316
GLU
316
B
ALA
317
n
317
ALA
317
B
LYS
318
n
318
LYS
318
B
ALA
319
n
319
ASN
319
B
LYS
320
n
320
LYS
320
B
ILE
321
n
321
ILE
321
B
GLU
322
n
322
GLU
322
B
GLU
323
n
323
GLU
323
B
LEU
324
n
324
LEU
324
B
LEU
325
n
325
LEU
325
B
ALA
326
n
326
ALA
326
B
SER
327
n
327
SER
327
B
LEU
328
n
328
LEU
328
B
LEU
329
n
329
LEU
329
B
ALA
330
n
330
ASN
330
B
ARG
331
n
331
ARG
331
B
VAL
332
n
332
VAL
332
B
CYS
333
n
333
CYS
333
B
n
334
334
B
n
335
335
B
n
336
336
B
ARG
337
n
337
ARG
337
B
ALA
338
n
338
LYS
338
B
PRO
339
n
339
PRO
339
B
HIS
340
n
340
HIS
340
B
THR
341
n
341
THR
341
B
VAL
342
n
342
VAL
342
B
ARG
343
n
343
ARG
343
B
LEU
344
n
344
LEU
344
B
ILE
345
n
345
ILE
345
B
ILE
346
n
346
ILE
346
B
ARG
347
n
347
ARG
347
B
ARG
348
n
348
ARG
348
B
TYR
349
n
349
TYR
349
B
n
350
350
B
n
351
351
B
n
352
352
B
n
353
353
B
n
354
354
B
n
355
355
B
GLY
356
n
356
GLY
356
B
ARG
357
n
357
ARG
357
B
GLU
358
n
358
GLU
358
B
SER
359
n
359
SER
359
B
ARG
360
n
360
ARG
360
B
GLN
361
n
361
GLN
361
B
CYS
362
n
362
CYS
362
B
PRO
363
n
363
PRO
363
B
ILE
364
n
364
ILE
364
B
PRO
365
n
365
PRO
365
B
SER
366
n
366
SER
366
B
HIS
367
n
367
HIS
367
B
VAL
368
n
368
VAL
368
B
ILE
369
n
369
ILE
369
B
ALA
370
n
370
GLN
370
B
LYS
371
n
371
LYS
371
B
n
372
372
B
n
373
373
B
n
374
374
B
n
375
375
B
n
376
376
B
n
377
377
B
ASP
378
n
378
ASP
378
B
VAL
379
n
379
VAL
379
B
MET
380
n
380
MET
380
B
THR
381
n
381
THR
381
B
PRO
382
n
382
PRO
382
B
MET
383
n
383
MET
383
B
VAL
384
n
384
VAL
384
B
ALA
385
n
385
ASP
385
B
ILE
386
n
386
ILE
386
B
LEU
387
n
387
LEU
387
B
MET
388
n
388
MET
388
B
LYS
389
n
389
LYS
389
B
LEU
390
n
390
LEU
390
B
PHE
391
n
391
PHE
391
B
ARG
392
n
392
ARG
392
B
ASN
393
n
393
ASN
393
B
MET
394
n
394
MET
394
B
VAL
395
n
395
VAL
395
B
ASN
396
n
396
ASN
396
B
VAL
397
n
397
VAL
397
B
ALA
398
n
398
LYS
398
B
MET
399
n
399
MET
399
B
PRO
400
n
400
PRO
400
B
PHE
401
n
401
PHE
401
B
HIS
402
n
402
HIS
402
B
LEU
403
n
403
LEU
403
B
THR
404
n
404
THR
404
B
LEU
405
n
405
LEU
405
B
LEU
406
n
406
LEU
406
B
SER
407
n
407
SER
407
B
VAL
408
n
408
VAL
408
B
CYS
409
n
409
CYS
409
B
PHE
410
n
410
PHE
410
B
CYS
411
n
411
CYS
411
B
ASN
412
n
412
ASN
412
B
LEU
413
n
413
LEU
413
B
LYS
414
n
414
LYS
414
B
n
415
415
B
n
416
416
B
n
417
417
B
n
418
418
B
n
419
419
B
n
420
420
B
A
839
n
1
DA
839
T
T
840
n
2
DT
840
T
G
841
n
3
DG
841
T
G
842
n
4
DG
842
T
G
843
n
5
DG
843
T
T
844
n
6
DT
844
T
C
845
n
7
DC
845
T
C
846
n
8
DC
846
T
T
847
n
9
DT
847
T
A
867
n
1
DA
867
P
G
868
n
2
DG
868
P
G
869
n
3
DG
869
P
A
870
n
4
DA
870
P
C
871
n
5
DC
871
P
C
872
n
6
DC
872
P
C
873
n
7
DC
873
P
2.0674
0.0400
1.5631
3.7037
1.0815
3.2699
-0.1143
0.0914
0.1771
-0.4261
-0.3127
0.5946
-0.6166
-0.0736
0.4270
0.0630
0.1092
-0.0229
0.0367
-0.0629
-0.1685
refined
3.6200
-16.9670
-20.1690
X-RAY DIFFRACTION
7.7443
0.1825
1.3689
8.4001
5.0385
9.2179
-0.0133
-0.5014
0.3248
0.0967
-0.9718
2.4773
-0.2595
-1.5978
0.9851
0.0316
0.1027
-0.0768
0.1119
-0.1730
0.3649
refined
-8.9830
-16.3290
-22.0320
X-RAY DIFFRACTION
0.9378
-0.0238
-0.5583
1.2742
0.0879
1.8845
0.0008
-0.0454
-0.0414
0.1250
-0.1200
0.0165
0.0162
0.2144
0.1192
0.0330
0.0298
0.0516
0.0140
0.0080
-0.2533
refined
11.6970
-23.2950
-3.8310
X-RAY DIFFRACTION
2.8656
0.8023
-0.9807
9.5311
-0.1196
5.0136
0.4340
0.0684
-0.7447
-1.1486
-0.4181
0.0300
0.2672
0.2368
-0.0159
0.2355
0.2065
-0.1253
-0.0607
-0.2060
-0.1444
refined
6.2840
-42.0990
-34.5720
X-RAY DIFFRACTION
0.0302
0.1245
0.0994
1.6571
0.2804
0.3417
-0.0124
0.1276
-0.0943
0.1584
-0.1541
0.3067
0.0706
0.1417
0.1664
0.0720
0.0675
0.0373
0.0062
-0.0476
-0.0977
refined
5.1110
-38.1437
-17.3402
X-RAY DIFFRACTION
B
26
B
67
X-RAY DIFFRACTION
1
B
68
B
97
X-RAY DIFFRACTION
2
B
98
B
301
X-RAY DIFFRACTION
3
B
302
B
414
X-RAY DIFFRACTION
4
T
839
T
847
X-RAY DIFFRACTION
5
P
867
P
973
X-RAY DIFFRACTION
5
author_and_software_defined_assembly
PISA
3
trimeric
4390
-41
19600
B
ASP
34
A
OD1
ASP
34
1_555
B
MG
871
D
MG
MG
1_555
B
LEU
35
A
O
LEU
35
1_555
97.2
B
ASP
34
A
OD1
ASP
34
1_555
B
MG
871
D
MG
MG
1_555
B
ASP
126
A
OD1
ASP
126
1_555
95.4
B
LEU
35
A
O
LEU
35
1_555
B
MG
871
D
MG
MG
1_555
B
ASP
126
A
OD1
ASP
126
1_555
82.7
B
ASP
34
A
OD1
ASP
34
1_555
B
MG
871
D
MG
MG
1_555
B
DGT
421
E
O2A
DGT
1_555
89.3
B
LEU
35
A
O
LEU
35
1_555
B
MG
871
D
MG
MG
1_555
B
DGT
421
E
O2A
DGT
1_555
170.4
B
ASP
126
A
OD1
ASP
126
1_555
B
MG
871
D
MG
MG
1_555
B
DGT
421
E
O2A
DGT
1_555
89.7
B
ASP
34
A
OD1
ASP
34
1_555
B
MG
871
D
MG
MG
1_555
B
DGT
421
E
O2G
DGT
1_555
95.7
B
LEU
35
A
O
LEU
35
1_555
B
MG
871
D
MG
MG
1_555
B
DGT
421
E
O2G
DGT
1_555
97.7
B
ASP
126
A
OD1
ASP
126
1_555
B
MG
871
D
MG
MG
1_555
B
DGT
421
E
O2G
DGT
1_555
168.8
B
DGT
421
E
O2A
DGT
1_555
B
MG
871
D
MG
MG
1_555
B
DGT
421
E
O2G
DGT
1_555
88.6
B
ASP
34
A
OD1
ASP
34
1_555
B
MG
871
D
MG
MG
1_555
B
DGT
421
E
O1B
DGT
1_555
173.7
B
LEU
35
A
O
LEU
35
1_555
B
MG
871
D
MG
MG
1_555
B
DGT
421
E
O1B
DGT
1_555
88.9
B
ASP
126
A
OD1
ASP
126
1_555
B
MG
871
D
MG
MG
1_555
B
DGT
421
E
O1B
DGT
1_555
83.7
B
DGT
421
E
O2A
DGT
1_555
B
MG
871
D
MG
MG
1_555
B
DGT
421
E
O1B
DGT
1_555
84.4
B
DGT
421
E
O2G
DGT
1_555
B
MG
871
D
MG
MG
1_555
B
DGT
421
E
O1B
DGT
1_555
85.1
B
ASP
126
A
OD1
ASP
126
1_555
B
MG
422
F
MG
MG
1_555
B
ASP
126
A
OD2
ASP
126
1_555
59.5
B
ASP
126
A
OD1
ASP
126
1_555
B
MG
422
F
MG
MG
1_555
B
DGT
421
E
O5'
DGT
1_555
132.4
B
ASP
126
A
OD2
ASP
126
1_555
B
MG
422
F
MG
MG
1_555
B
DGT
421
E
O5'
DGT
1_555
106.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
B
N
GLU
121
A
N
GLU
121
B
O
PHE
129
A
O
PHE
129
B
O
ASN
128
A
O
ASN
128
B
N
VAL
33
A
N
VAL
33
B
N
ASP
34
A
N
ASP
34
B
O
CYS
196
A
O
CYS
196
B
N
VAL
199
A
N
VAL
199
B
O
THR
219
A
O
THR
219
B
O
GLN
218
A
O
GLN
218
B
N
HIS
156
A
N
HIS
156
B
O
MET
79
A
O
MET
79
B
N
VAL
63
A
N
VAL
63
B
O
THR
65
A
O
THR
65
B
N
VAL
57
A
N
VAL
57
B
N
GLN
58
A
N
GLN
58
B
O
VAL
94
A
O
VAL
94
B
N
PHE
302
A
N
PHE
302
B
O
PHE
410
A
O
PHE
410
B
O
THR
404
A
O
THR
404
B
N
ARG
347
A
N
ARG
347
B
N
LEU
344
A
N
LEU
344
B
O
ARG
360
A
O
ARG
360
1
B
CG
GLU
49
A
CG
GLU
49
1
Y
1
B
CD
GLU
49
A
CD
GLU
49
1
Y
1
B
OE1
GLU
49
A
OE1
GLU
49
1
Y
1
B
OE2
GLU
49
A
OE2
GLU
49
1
Y
1
B
CG
LYS
51
A
CG
LYS
51
1
Y
1
B
CD
LYS
51
A
CD
LYS
51
1
Y
1
B
CE
LYS
51
A
CE
LYS
51
1
Y
1
B
NZ
LYS
51
A
NZ
LYS
51
1
Y
1
B
CG
ASP
52
A
CG
ASP
52
1
Y
1
B
OD1
ASP
52
A
OD1
ASP
52
1
Y
1
B
OD2
ASP
52
A
OD2
ASP
52
1
Y
1
B
CG
LYS
76
A
CG
LYS
76
1
Y
1
B
CD
LYS
76
A
CD
LYS
76
1
Y
1
B
CE
LYS
76
A
CE
LYS
76
1
Y
1
B
NZ
LYS
76
A
NZ
LYS
76
1
Y
1
B
CG
GLU
86
A
CG
GLU
86
1
Y
1
B
CD
GLU
86
A
CD
GLU
86
1
Y
1
B
OE1
GLU
86
A
OE1
GLU
86
1
Y
1
B
OE2
GLU
86
A
OE2
GLU
86
1
Y
1
B
CG
LYS
87
A
CG
LYS
87
1
Y
1
B
CD
LYS
87
A
CD
LYS
87
1
Y
1
B
CE
LYS
87
A
CE
LYS
87
1
Y
1
B
NZ
LYS
87
A
NZ
LYS
87
1
Y
1
B
CG
GLN
141
A
CG
GLN
141
1
Y
1
B
CD
GLN
141
A
CD
GLN
141
1
Y
1
B
OE1
GLN
141
A
OE1
GLN
141
1
Y
1
B
NE2
GLN
141
A
NE2
GLN
141
1
Y
1
B
CG
GLN
144
A
CG
GLN
144
1
Y
1
B
CD
GLN
144
A
CD
GLN
144
1
Y
1
B
OE1
GLN
144
A
OE1
GLN
144
1
Y
1
B
NE2
GLN
144
A
NE2
GLN
144
1
Y
1
B
OG
SER
145
A
OG
SER
145
1
Y
1
B
CG
ASP
146
A
CG
ASP
146
1
Y
1
B
OD1
ASP
146
A
OD1
ASP
146
1
Y
1
B
OD2
ASP
146
A
OD2
ASP
146
1
Y
1
B
CG
LYS
310
A
CG
LYS
310
1
Y
1
B
CD
LYS
310
A
CD
LYS
310
1
Y
1
B
CE
LYS
310
A
CE
LYS
310
1
Y
1
B
NZ
LYS
310
A
NZ
LYS
310
1
Y
1
B
CG
ASN
319
A
CG
ASN
319
1
Y
1
B
OD1
ASN
319
A
OD1
ASN
319
1
Y
1
B
ND2
ASN
319
A
ND2
ASN
319
1
Y
1
B
CG
ASN
330
A
CG
ASN
330
1
Y
1
B
OD1
ASN
330
A
OD1
ASN
330
1
Y
1
B
ND2
ASN
330
A
ND2
ASN
330
1
Y
1
B
SG
CYS
333
A
SG
CYS
333
1
Y
1
B
CG
LYS
338
A
CG
LYS
338
1
Y
1
B
CD
LYS
338
A
CD
LYS
338
1
Y
1
B
CE
LYS
338
A
CE
LYS
338
1
Y
1
B
NZ
LYS
338
A
NZ
LYS
338
1
Y
1
B
CG
GLN
370
A
CG
GLN
370
1
Y
1
B
CD
GLN
370
A
CD
GLN
370
1
Y
1
B
OE1
GLN
370
A
OE1
GLN
370
1
Y
1
B
NE2
GLN
370
A
NE2
GLN
370
1
Y
1
B
CG
ASP
385
A
CG
ASP
385
1
Y
1
B
OD1
ASP
385
A
OD1
ASP
385
1
Y
1
B
OD2
ASP
385
A
OD2
ASP
385
1
Y
1
B
CG
LYS
398
A
CG
LYS
398
1
Y
1
B
CD
LYS
398
A
CD
LYS
398
1
Y
1
B
CE
LYS
398
A
CE
LYS
398
1
Y
1
B
NZ
LYS
398
A
NZ
LYS
398
1
Y
1
B
CG
LYS
414
A
CG
LYS
414
1
Y
1
B
CD
LYS
414
A
CD
LYS
414
1
Y
1
B
CE
LYS
414
A
CE
LYS
414
1
Y
1
B
NZ
LYS
414
A
NZ
LYS
414
1
Y
1
T
O5'
DA
839
B
O5'
DA
1
1
Y
1
P
O3'
DC
873
C
O3'
DC
7
1
Y
1
B
MET
1
A
MET
1
1
Y
1
B
GLU
2
A
GLU
2
1
Y
1
B
LEU
3
A
LEU
3
1
Y
1
B
ALA
4
A
ALA
4
1
Y
1
B
ASP
5
A
ASP
5
1
Y
1
B
VAL
6
A
VAL
6
1
Y
1
B
GLY
7
A
GLY
7
1
Y
1
B
ALA
8
A
ALA
8
1
Y
1
B
ALA
9
A
ALA
9
1
Y
1
B
ALA
10
A
ALA
10
1
Y
1
B
SER
11
A
SER
11
1
Y
1
B
SER
12
A
SER
12
1
Y
1
B
GLN
13
A
GLN
13
1
Y
1
B
GLY
14
A
GLY
14
1
Y
1
B
VAL
15
A
VAL
15
1
Y
1
B
HIS
16
A
HIS
16
1
Y
1
B
ASP
17
A
ASP
17
1
Y
1
B
GLN
18
A
GLN
18
1
Y
1
B
VAL
19
A
VAL
19
1
Y
1
B
LEU
20
A
LEU
20
1
Y
1
B
PRO
21
A
PRO
21
1
Y
1
B
THR
22
A
THR
22
1
Y
1
B
PRO
23
A
PRO
23
1
Y
1
B
ASN
24
A
ASN
24
1
Y
1
B
ALA
25
A
ALA
25
1
Y
1
B
GLN
334
A
GLN
334
1
Y
1
B
ASP
335
A
ASP
335
1
Y
1
B
GLY
336
A
GLY
336
1
Y
1
B
SER
350
A
SER
350
1
Y
1
B
SER
351
A
SER
351
1
Y
1
B
GLU
352
A
GLU
352
1
Y
1
B
LYS
353
A
LYS
353
1
Y
1
B
HIS
354
A
HIS
354
1
Y
1
B
TYR
355
A
TYR
355
1
Y
1
B
LEU
372
A
LEU
372
1
Y
1
B
GLY
373
A
GLY
373
1
Y
1
B
THR
374
A
THR
374
1
Y
1
B
GLY
375
A
GLY
375
1
Y
1
B
ASN
376
A
ASN
376
1
Y
1
B
TYR
377
A
TYR
377
1
Y
1
B
ALA
415
A
ALA
415
1
Y
1
B
LEU
416
A
LEU
416
1
Y
1
B
ASN
417
A
ASN
417
1
Y
1
B
THR
418
A
THR
418
1
Y
1
B
ALA
419
A
ALA
419
1
Y
1
B
LYS
420
A
LYS
420
1
Y
1
P
P
O5'
O
DA
HOH
867
115
1.61
1
B
B
O2A
O
DGT
HOH
421
632
1.68
1
B
B
O
O
HOH
HOH
430
520
1.97
1
B
B
OG
O
SER
HOH
117
626
2.05
1
B
B
OE2
O
GLU
HOH
304
457
2.12
1
T
B
O2
N2
DT
DGT
840
421
2.14
1
B
B
OD1
O
ASN
HOH
159
497
2.17
1
B
B
SER
ALA
149
150
53.10
1
-7.64
0.50
120.30
112.66
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
184
184
184
N
1
7.20
0.50
120.30
127.50
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
184
184
184
N
1
11.66
1.70
111.00
122.66
B
B
B
CB
CG
CD2
LEU
LEU
LEU
204
204
204
N
1
9.62
1.40
123.60
133.22
B
B
B
CD
NE
CZ
ARG
ARG
ARG
259
259
259
N
1
-8.26
0.50
120.30
112.04
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
259
259
259
N
1
7.15
0.50
120.30
127.45
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
259
259
259
N
1
3.19
0.50
120.30
123.49
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
331
331
331
N
1
-5.62
0.50
120.30
114.68
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
331
331
331
N
1
-4.42
0.50
120.30
115.88
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
392
392
392
N
1
3.09
0.50
106.80
109.89
T
T
T
O4'
C1'
C2'
DT
DT
DT
840
840
840
N
1
3.56
0.30
108.30
111.86
T
T
T
O4'
C1'
N9
DG
DG
DG
841
841
841
N
1
3.14
0.50
106.80
109.94
T
T
T
O4'
C1'
C2'
DG
DG
DG
842
842
842
N
1
-2.75
0.40
110.80
108.05
T
T
T
C4
C5
N7
DG
DG
DG
842
842
842
N
1
-5.96
0.80
102.40
96.44
T
T
T
C3'
C2'
C1'
DG
DG
DG
843
843
843
N
1
3.10
0.50
106.80
109.90
T
T
T
O4'
C1'
C2'
DT
DT
DT
844
844
844
N
1
3.68
0.30
108.30
111.98
T
T
T
O4'
C1'
N1
DT
DT
DT
844
844
844
N
1
3.08
0.30
108.30
111.38
T
T
T
O4'
C1'
N1
DC
DC
DC
845
845
845
N
1
-4.96
0.70
108.00
103.04
T
T
T
O4'
C1'
N1
DC
DC
DC
846
846
846
N
1
-7.19
0.70
108.00
100.81
T
T
T
O4'
C1'
N1
DT
DT
DT
847
847
847
N
1
4.49
0.30
108.30
112.79
P
P
P
O4'
C1'
N9
DA
DA
DA
870
870
870
N
1
-2.43
0.40
104.50
102.07
P
P
P
O4'
C4'
C3'
DC
DC
DC
872
872
872
N
1
3.81
0.30
108.30
112.11
P
P
P
O4'
C1'
N1
DC
DC
DC
873
873
873
N
1
B
B
CD
OE2
GLU
GLU
314
314
0.076
0.011
1.252
1.328
N
1
B
B
CG
CD2
HIS
HIS
367
367
0.065
0.009
1.354
1.419
N
1
B
B
CA
CB
VAL
VAL
379
379
0.218
0.021
1.543
1.761
N
1
B
B
CG
SD
MET
MET
383
383
0.181
0.026
1.807
1.988
N
1
T
T
O3'
C3'
DT
DT
844
844
-0.041
0.006
1.419
1.378
N
1
P
P
O3'
C3'
DC
DC
872
872
-0.042
0.006
1.419
1.377
N
1
T
P
O3'
O
DT
HOH
847
115
1.80
1_555
12_544
1
B
CYS
37
22.77
64.68
1
B
PRO
48
-65.63
2.91
1
B
LYS
60
54.45
-115.59
1
B
ALA
150
39.74
-61.20
1
B
GLN
370
173.98
87.10
1
B
CYS
411
-129.62
-168.45
87.41
43.899
23.88
-0.430
-0.210
0.000
-0.430
0.000
0.640
0.948
0.943
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.248
0.218
0.219
2.000
23.840
826
39636
2.100
100.000
0.251
0.227
1.00
0.50
0.805
7.384
0.113
0.171
0.154
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
0.165
0.150
0.800
0.800
1.200
MAXIMUM LIKELIHOOD
MASK
2.000
23.840
240
3485
33
320
2892
0.019
0.022
3338
1.821
2.116
4585
6.400
5.000
372
39.190
24.298
121
17.037
15.000
542
22.614
15.000
19
0.135
0.200
539
0.008
0.021
2328
0.899
1.500
1871
1.614
2.000
3023
2.558
3.000
1467
3.836
4.500
1562
0.333
0.259
2.052
87
2750
2837
20
100.000
2.000
50.000
3GV8
40059
0.121
5.148
1
57.940
13.300
99.700
0.577
2.00
2.07
3899
0.720
1
8.90
100.00
0.429
2.07
2.15
3935
0.947
1
12.20
100.00
0.336
2.15
2.25
3933
1.203
1
14.30
100.00
0.284
2.25
2.37
3961
5.156
1
14.30
100.00
0.224
2.37
2.52
3969
2.205
1
14.30
100.00
0.189
2.52
2.71
3976
3.285
1
14.20
100.00
0.165
2.71
2.99
4011
4.945
1
14.20
100.00
0.142
2.99
3.42
4026
8.784
1
14.00
99.90
0.128
3.42
4.31
4092
13.143
1
13.80
99.90
0.083
4.31
50.00
4257
8.765
1
12.70
97.10
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
Human DNA polymerase iota in complex with T template DNA and incoming dGTP
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
4
N
N
6
N
N
6
N
N
6
N
N
B
CYS
37
A
CYS
37
HELX_P
B
ASN
47
A
ASN
47
1
1
11
B
PRO
48
A
PRO
48
HELX_P
B
LYS
51
A
LYS
51
5
2
4
B
ASN
67
A
ASN
67
HELX_P
B
LYS
72
A
LYS
72
1
3
6
B
VAL
81
A
VAL
81
HELX_P
B
CYS
88
A
CYS
88
1
4
8
B
LEU
99
A
LEU
99
HELX_P
B
SER
117
A
SER
117
1
5
19
B
LEU
132
A
LEU
132
HELX_P
B
GLN
142
A
GLN
142
1
6
11
B
LEU
143
A
LEU
143
HELX_P
B
SER
149
A
SER
149
5
7
7
B
ASN
159
A
ASN
159
HELX_P
B
GLN
161
A
GLN
161
5
8
3
B
ASP
167
A
ASP
167
HELX_P
B
GLY
192
A
GLY
192
1
9
26
B
ASN
202
A
ASN
202
HELX_P
B
GLY
211
A
GLY
211
1
10
10
B
LEU
222
A
LEU
222
HELX_P
B
GLU
224
A
GLU
224
5
11
3
B
SER
225
A
SER
225
HELX_P
B
SER
232
A
SER
232
1
12
8
B
HIS
235
A
HIS
235
HELX_P
B
ILE
239
A
ILE
239
5
13
5
B
GLY
243
A
GLY
243
HELX_P
B
LEU
253
A
LEU
253
1
14
11
B
SER
257
A
SER
257
HELX_P
B
PHE
264
A
PHE
264
1
15
8
B
SER
265
A
SER
265
HELX_P
B
GLY
274
A
GLY
274
1
16
10
B
GLY
274
A
GLY
274
HELX_P
B
PHE
286
A
PHE
286
1
17
13
B
SER
313
A
SER
313
HELX_P
B
CYS
333
A
CYS
333
1
18
21
B
VAL
379
A
VAL
379
HELX_P
B
VAL
395
A
VAL
395
1
19
17
metalc
2.397
B
ASP
34
A
OD1
ASP
34
1_555
B
MG
871
D
MG
MG
1_555
metalc
2.235
B
LEU
35
A
O
LEU
35
1_555
B
MG
871
D
MG
MG
1_555
metalc
2.398
B
ASP
126
A
OD1
ASP
126
1_555
B
MG
422
F
MG
MG
1_555
metalc
2.145
B
ASP
126
A
OD2
ASP
126
1_555
B
MG
422
F
MG
MG
1_555
metalc
2.142
B
ASP
126
A
OD1
ASP
126
1_555
B
MG
871
D
MG
MG
1_555
metalc
2.176
B
DGT
421
E
O5'
DGT
1_555
B
MG
422
F
MG
MG
1_555
metalc
2.295
B
DGT
421
E
O2A
DGT
1_555
B
MG
871
D
MG
MG
1_555
metalc
2.311
B
DGT
421
E
O2G
DGT
1_555
B
MG
871
D
MG
MG
1_555
metalc
2.352
B
DGT
421
E
O1B
DGT
1_555
B
MG
871
D
MG
MG
1_555
hydrog
WATSON-CRICK
T
DG
841
B
N1
DG
3
1_555
P
DC
873
C
N3
DC
7
1_555
hydrog
WATSON-CRICK
T
DG
841
B
N2
DG
3
1_555
P
DC
873
C
O2
DC
7
1_555
hydrog
WATSON-CRICK
T
DG
841
B
O6
DG
3
1_555
P
DC
873
C
N4
DC
7
1_555
hydrog
WATSON-CRICK
T
DG
842
B
N1
DG
4
1_555
P
DC
872
C
N3
DC
6
1_555
hydrog
WATSON-CRICK
T
DG
842
B
N2
DG
4
1_555
P
DC
872
C
O2
DC
6
1_555
hydrog
WATSON-CRICK
T
DG
842
B
O6
DG
4
1_555
P
DC
872
C
N4
DC
6
1_555
hydrog
WATSON-CRICK
T
DG
843
B
N1
DG
5
1_555
P
DC
871
C
N3
DC
5
1_555
hydrog
WATSON-CRICK
T
DG
843
B
N2
DG
5
1_555
P
DC
871
C
O2
DC
5
1_555
hydrog
WATSON-CRICK
T
DG
843
B
O6
DG
5
1_555
P
DC
871
C
N4
DC
5
1_555
hydrog
WATSON-CRICK
T
DT
844
B
N3
DT
6
1_555
P
DA
870
C
N1
DA
4
1_555
hydrog
WATSON-CRICK
T
DT
844
B
O4
DT
6
1_555
P
DA
870
C
N6
DA
4
1_555
hydrog
WATSON-CRICK
T
DC
845
B
N3
DC
7
1_555
P
DG
869
C
N1
DG
3
1_555
hydrog
WATSON-CRICK
T
DC
845
B
N4
DC
7
1_555
P
DG
869
C
O6
DG
3
1_555
hydrog
WATSON-CRICK
T
DC
845
B
O2
DC
7
1_555
P
DG
869
C
N2
DG
3
1_555
hydrog
WATSON-CRICK
T
DC
846
B
N3
DC
8
1_555
P
DG
868
C
N1
DG
2
1_555
hydrog
WATSON-CRICK
T
DC
846
B
N4
DC
8
1_555
P
DG
868
C
O6
DG
2
1_555
hydrog
WATSON-CRICK
T
DC
846
B
O2
DC
8
1_555
P
DG
868
C
N2
DG
2
1_555
hydrog
WATSON-CRICK
T
DT
847
B
N3
DT
9
1_555
P
DA
867
C
N1
DA
1
1_555
hydrog
WATSON-CRICK
T
DT
847
B
O4
DT
9
1_555
P
DA
867
C
N6
DA
1
1_555
TRANSFERASE/DNA
Y-family polymerase, polymerase iota, error prone replication, DNA damage, DNA repair, DNA replication, DNA synthesis, DNA-binding, DNA-directed DNA polymerase, Magnesium, Metal-binding, Mutator protein, Nucleotidyltransferase, Nucleus, Schiff base, Transferase, TRANSFERASE-DNA COMPLEX
B
LYS
214
A
LYS
214
1
B
PRO
215
A
PRO
215
-4.96
POLI_HUMAN
UNP
1
1
Q9UNA4
MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMN
VRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNN
QSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIP
GIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNK
IEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMP
FHLTLLSVCFCNLKALNTAK
3GV8
PDB
2
839
3GV8
ATGGGTCCT
3GV8
PDB
3
867
3GV8
AGGACCC
1
420
3GV8
1
420
Q9UNA4
B
1
1
420
839
847
3GV8
839
847
3GV8
T
2
1
9
867
873
3GV8
867
873
3GV8
P
3
1
7
6
4
4
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
B
VAL
120
A
VAL
120
B
LEU
123
A
LEU
123
B
GLU
127
A
GLU
127
B
ASP
131
A
ASP
131
B
ILE
30
A
ILE
30
B
LEU
35
A
LEU
35
B
GLY
195
A
GLY
195
B
ALA
200
A
ALA
200
B
GLN
218
A
GLN
218
B
VAL
220
A
VAL
220
B
HIS
156
A
HIS
156
B
VAL
157
A
VAL
157
B
MET
79
A
MET
79
B
ASN
80
A
ASN
80
B
LEU
62
A
LEU
62
B
CYS
66
A
CYS
66
B
LEU
55
A
LEU
55
B
GLN
59
A
GLN
59
B
VAL
92
A
VAL
92
B
ASN
95
A
ASN
95
B
SER
301
A
SER
301
B
CYS
311
A
CYS
311
B
LEU
403
A
LEU
403
B
LYS
414
A
LYS
414
B
LYS
338
A
LYS
338
B
ARG
348
A
ARG
348
B
ARG
357
A
ARG
357
B
PRO
363
A
PRO
363
BINDING SITE FOR RESIDUE MG B 871
B
MG
871
Software
6
BINDING SITE FOR RESIDUE DGT B 421
B
DGT
421
Software
23
BINDING SITE FOR RESIDUE MG B 422
B
MG
422
Software
4
B
ASP
34
A
ASP
34
6
1_555
B
LEU
35
A
LEU
35
6
1_555
B
ASP
126
A
ASP
126
6
1_555
B
DGT
421
E
DGT
6
1_555
B
MG
422
F
MG
6
1_555
B
HOH
632
G
HOH
6
1_555
B
ASP
34
A
ASP
34
23
1_555
B
LEU
35
A
LEU
35
23
1_555
B
ASP
36
A
ASP
36
23
1_555
B
CYS
37
A
CYS
37
23
1_555
B
PHE
38
A
PHE
38
23
1_555
B
TYR
39
A
TYR
39
23
1_555
B
GLN
59
A
GLN
59
23
1_555
B
THR
65
A
THR
65
23
1_555
B
TYR
68
A
TYR
68
23
1_555
B
ARG
71
A
ARG
71
23
1_555
B
LYS
77
A
LYS
77
23
1_555
B
ASP
126
A
ASP
126
23
1_555
B
LYS
214
A
LYS
214
23
1_555
B
MG
422
F
MG
23
1_555
B
HOH
523
G
HOH
23
1_555
B
HOH
589
G
HOH
23
1_555
B
HOH
592
G
HOH
23
1_555
B
HOH
631
G
HOH
23
1_555
B
HOH
632
G
HOH
23
1_555
B
MG
871
D
MG
23
1_555
P
DC
873
C
DC
7
23
1_555
T
DT
840
B
DT
2
23
1_555
T
DG
841
B
DG
3
23
1_555
B
ASP
126
A
ASP
126
4
1_555
B
DGT
421
E
DGT
4
1_555
B
HOH
631
G
HOH
4
1_555
B
MG
871
D
MG
4
1_555
179
P 65 2 2