0.010504
0.000000
0.002478
0.000000
0.016843
0.000000
0.000000
0.000000
0.016752
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
103.270
90.000
95.205
59.373
61.333
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H9 N O4
147.129
D-GLUTAMIC ACID
D-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C3 H7 N O5 S
169.156
n
CYSTEINESULFONIC ACID
L-peptide linking
C8 H18 O5
194.226
TETRAETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.F
1744-3091
66
1354
1364
10.1107/S1744309110021214
20944232
Structure of the gamma-D-glutamyl-L-diamino acid endopeptidase YkfC from Bacillus cereus in complex with L-Ala-[gamma]-D-Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases
2010
10.2210/pdb3h41/pdb
pdb_00003h41
100
1
Flat mirror (vertical focusing)
CCD
2009-03-27
MARMOSAIC 325 mm CCD
Single crystal Si(111) bent monochromator (horizontal focusing)
MAD
M
x-ray
1
0.97860
1.0
0.91837
1.0
0.97985
1.0
BL11-1
SSRL
0.97860,0.91837,0.97985
SYNCHROTRON
SSRL BEAMLINE BL11-1
35168.770
NLP/P60 family protein
1
man
polymer
89.093
ALANINE
1
syn
non-polymer
147.129
D-GLUTAMIC ACID
1
syn
non-polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
194.226
TETRAETHYLENE GLYCOL
6
syn
non-polymer
18.015
water
265
nat
water
no
yes
GEEKKDSKAFIDVSAATLWTAPDSLRPIDVPSATNPVDLWKWTKS(MSE)TLDEKLWLTNANKLETQALLGQEVTVVDKK
GDWVKVLVHGQPTPRNEEGYPGW(MSE)PEKQLTYNQEFADKTNEPFVLVTKPTAILYINPSEKHKSLEVSYNTRLPLLS
EDTISYRVLLPNGQKAWLRKNDGTFYRSQNDIPTPAADDLINTGK(MSE)FLGLPYIWAGTSGFGFD(OCS)SGFTHTIY
KSHGITIPRDSGPQSRNGVAVDKEHLQKGDLIFFAHDQGKGSVHHVA(MSE)YIGDGN(MSE)IHSPRAERSVEIIPLNT
PGYIEEYAGARRYLP
GEEKKDSKAFIDVSAATLWTAPDSLRPIDVPSATNPVDLWKWTKSMTLDEKLWLTNANKLETQALLGQEVTVVDKKGDWV
KVLVHGQPTPRNEEGYPGWMPEKQLTYNQEFADKTNEPFVLVTKPTAILYINPSEKHKSLEVSYNTRLPLLSEDTISYRV
LLPNGQKAWLRKNDGTFYRSQNDIPTPAADDLINTGKMFLGLPYIWAGTSGFGFDCSGFTHTIYKSHGITIPRDSGPQSR
NGVAVDKEHLQKGDLIFFAHDQGKGSVHHVAMYIGDGNMIHSPRAERSVEIIPLNTPGYIEEYAGARRYLP
A
396160
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
10987
BCE_2878, NP_979181.1
222523
Bacillus cereus ATCC 10987
562
Escherichia coli
HK100
Plasmid
SpeedET
1
2.39
48.59
VAPOR DIFFUSION, SITTING DROP
4.2
0.2000M NaCl, 50.0000% PEG-200, 0.1M Phosphate Citrate pH 4.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
software
software
struct_conn
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Refinement description
Data collection
Derived calculations
Refinement description
Database references
Derived calculations
1
0
2009-05-05
1
1
2011-07-13
1
2
2017-11-01
1
3
2019-07-24
1
4
2023-02-01
_software.classification
_software.name
_software.classification
_software.contact_author
_software.contact_author_email
_software.language
_software.location
_software.name
_software.type
_software.version
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2009-04-17
REL
REL
ALA
ALANINE
DGL
D-GLUTAMIC ACID
PO4
PHOSPHATE ION
PG4
TETRAETHYLENE GLYCOL
HOH
water
THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CLONED CONSTRUCT CONTAINS RESIDUES 24-333 OF THE FULL LENGTH PROTEIN.
ALA
501
2
ALA
ALA
501
A
DGL
502
3
DGL
DGL
502
A
PO4
1
4
PO4
PO4
1
A
PG4
2
5
PG4
PG4
2
A
PG4
3
5
PG4
PG4
3
A
PG4
4
5
PG4
PG4
4
A
PG4
5
5
PG4
PG4
5
A
PG4
6
5
PG4
PG4
6
A
PG4
7
5
PG4
PG4
7
A
HOH
8
6
HOH
HOH
8
A
HOH
9
6
HOH
HOH
9
A
HOH
10
6
HOH
HOH
10
A
HOH
11
6
HOH
HOH
11
A
HOH
12
6
HOH
HOH
12
A
HOH
13
6
HOH
HOH
13
A
HOH
14
6
HOH
HOH
14
A
HOH
15
6
HOH
HOH
15
A
HOH
16
6
HOH
HOH
16
A
HOH
17
6
HOH
HOH
17
A
HOH
18
6
HOH
HOH
18
A
HOH
19
6
HOH
HOH
19
A
HOH
20
6
HOH
HOH
20
A
HOH
21
6
HOH
HOH
21
A
HOH
22
6
HOH
HOH
22
A
HOH
23
6
HOH
HOH
503
A
HOH
24
6
HOH
HOH
504
A
HOH
25
6
HOH
HOH
505
A
HOH
26
6
HOH
HOH
506
A
HOH
27
6
HOH
HOH
507
A
HOH
28
6
HOH
HOH
508
A
HOH
29
6
HOH
HOH
509
A
HOH
30
6
HOH
HOH
510
A
HOH
31
6
HOH
HOH
511
A
HOH
32
6
HOH
HOH
512
A
HOH
33
6
HOH
HOH
513
A
HOH
34
6
HOH
HOH
514
A
HOH
35
6
HOH
HOH
515
A
HOH
36
6
HOH
HOH
516
A
HOH
37
6
HOH
HOH
517
A
HOH
38
6
HOH
HOH
518
A
HOH
39
6
HOH
HOH
519
A
HOH
40
6
HOH
HOH
520
A
HOH
41
6
HOH
HOH
521
A
HOH
42
6
HOH
HOH
522
A
HOH
43
6
HOH
HOH
523
A
HOH
44
6
HOH
HOH
524
A
HOH
45
6
HOH
HOH
525
A
HOH
46
6
HOH
HOH
526
A
HOH
47
6
HOH
HOH
527
A
HOH
48
6
HOH
HOH
528
A
HOH
49
6
HOH
HOH
529
A
HOH
50
6
HOH
HOH
530
A
HOH
51
6
HOH
HOH
531
A
HOH
52
6
HOH
HOH
532
A
HOH
53
6
HOH
HOH
533
A
HOH
54
6
HOH
HOH
534
A
HOH
55
6
HOH
HOH
535
A
HOH
56
6
HOH
HOH
536
A
HOH
57
6
HOH
HOH
537
A
HOH
58
6
HOH
HOH
538
A
HOH
59
6
HOH
HOH
539
A
HOH
60
6
HOH
HOH
540
A
HOH
61
6
HOH
HOH
541
A
HOH
62
6
HOH
HOH
542
A
HOH
63
6
HOH
HOH
543
A
HOH
64
6
HOH
HOH
544
A
HOH
65
6
HOH
HOH
545
A
HOH
66
6
HOH
HOH
546
A
HOH
67
6
HOH
HOH
547
A
HOH
68
6
HOH
HOH
548
A
HOH
69
6
HOH
HOH
549
A
HOH
70
6
HOH
HOH
550
A
HOH
71
6
HOH
HOH
551
A
HOH
72
6
HOH
HOH
552
A
HOH
73
6
HOH
HOH
553
A
HOH
74
6
HOH
HOH
554
A
HOH
75
6
HOH
HOH
555
A
HOH
76
6
HOH
HOH
556
A
HOH
77
6
HOH
HOH
557
A
HOH
78
6
HOH
HOH
558
A
HOH
79
6
HOH
HOH
559
A
HOH
80
6
HOH
HOH
560
A
HOH
81
6
HOH
HOH
561
A
HOH
82
6
HOH
HOH
562
A
HOH
83
6
HOH
HOH
563
A
HOH
84
6
HOH
HOH
564
A
HOH
85
6
HOH
HOH
565
A
HOH
86
6
HOH
HOH
566
A
HOH
87
6
HOH
HOH
567
A
HOH
88
6
HOH
HOH
568
A
HOH
89
6
HOH
HOH
569
A
HOH
90
6
HOH
HOH
570
A
HOH
91
6
HOH
HOH
571
A
HOH
92
6
HOH
HOH
572
A
HOH
93
6
HOH
HOH
573
A
HOH
94
6
HOH
HOH
574
A
HOH
95
6
HOH
HOH
575
A
HOH
96
6
HOH
HOH
576
A
HOH
97
6
HOH
HOH
577
A
HOH
98
6
HOH
HOH
578
A
HOH
99
6
HOH
HOH
579
A
HOH
100
6
HOH
HOH
580
A
HOH
101
6
HOH
HOH
581
A
HOH
102
6
HOH
HOH
582
A
HOH
103
6
HOH
HOH
583
A
HOH
104
6
HOH
HOH
584
A
HOH
105
6
HOH
HOH
585
A
HOH
106
6
HOH
HOH
586
A
HOH
107
6
HOH
HOH
587
A
HOH
108
6
HOH
HOH
588
A
HOH
109
6
HOH
HOH
589
A
HOH
110
6
HOH
HOH
590
A
HOH
111
6
HOH
HOH
591
A
HOH
112
6
HOH
HOH
592
A
HOH
113
6
HOH
HOH
593
A
HOH
114
6
HOH
HOH
594
A
HOH
115
6
HOH
HOH
595
A
HOH
116
6
HOH
HOH
596
A
HOH
117
6
HOH
HOH
597
A
HOH
118
6
HOH
HOH
598
A
HOH
119
6
HOH
HOH
599
A
HOH
120
6
HOH
HOH
600
A
HOH
121
6
HOH
HOH
601
A
HOH
122
6
HOH
HOH
602
A
HOH
123
6
HOH
HOH
603
A
HOH
124
6
HOH
HOH
604
A
HOH
125
6
HOH
HOH
605
A
HOH
126
6
HOH
HOH
606
A
HOH
127
6
HOH
HOH
607
A
HOH
128
6
HOH
HOH
608
A
HOH
129
6
HOH
HOH
609
A
HOH
130
6
HOH
HOH
610
A
HOH
131
6
HOH
HOH
611
A
HOH
132
6
HOH
HOH
612
A
HOH
133
6
HOH
HOH
613
A
HOH
134
6
HOH
HOH
614
A
HOH
135
6
HOH
HOH
615
A
HOH
136
6
HOH
HOH
616
A
HOH
137
6
HOH
HOH
617
A
HOH
138
6
HOH
HOH
618
A
HOH
139
6
HOH
HOH
619
A
HOH
140
6
HOH
HOH
620
A
HOH
141
6
HOH
HOH
621
A
HOH
142
6
HOH
HOH
622
A
HOH
143
6
HOH
HOH
623
A
HOH
144
6
HOH
HOH
624
A
HOH
145
6
HOH
HOH
625
A
HOH
146
6
HOH
HOH
626
A
HOH
147
6
HOH
HOH
627
A
HOH
148
6
HOH
HOH
628
A
HOH
149
6
HOH
HOH
629
A
HOH
150
6
HOH
HOH
630
A
HOH
151
6
HOH
HOH
631
A
HOH
152
6
HOH
HOH
632
A
HOH
153
6
HOH
HOH
633
A
HOH
154
6
HOH
HOH
634
A
HOH
155
6
HOH
HOH
635
A
HOH
156
6
HOH
HOH
636
A
HOH
157
6
HOH
HOH
637
A
HOH
158
6
HOH
HOH
638
A
HOH
159
6
HOH
HOH
639
A
HOH
160
6
HOH
HOH
640
A
HOH
161
6
HOH
HOH
641
A
HOH
162
6
HOH
HOH
642
A
HOH
163
6
HOH
HOH
643
A
HOH
164
6
HOH
HOH
644
A
HOH
165
6
HOH
HOH
645
A
HOH
166
6
HOH
HOH
646
A
HOH
167
6
HOH
HOH
647
A
HOH
168
6
HOH
HOH
648
A
HOH
169
6
HOH
HOH
649
A
HOH
170
6
HOH
HOH
650
A
HOH
171
6
HOH
HOH
651
A
HOH
172
6
HOH
HOH
652
A
HOH
173
6
HOH
HOH
653
A
HOH
174
6
HOH
HOH
654
A
HOH
175
6
HOH
HOH
655
A
HOH
176
6
HOH
HOH
656
A
HOH
177
6
HOH
HOH
657
A
HOH
178
6
HOH
HOH
658
A
HOH
179
6
HOH
HOH
659
A
HOH
180
6
HOH
HOH
660
A
HOH
181
6
HOH
HOH
661
A
HOH
182
6
HOH
HOH
662
A
HOH
183
6
HOH
HOH
663
A
HOH
184
6
HOH
HOH
664
A
HOH
185
6
HOH
HOH
665
A
HOH
186
6
HOH
HOH
666
A
HOH
187
6
HOH
HOH
667
A
HOH
188
6
HOH
HOH
668
A
HOH
189
6
HOH
HOH
669
A
HOH
190
6
HOH
HOH
670
A
HOH
191
6
HOH
HOH
671
A
HOH
192
6
HOH
HOH
672
A
HOH
193
6
HOH
HOH
673
A
HOH
194
6
HOH
HOH
674
A
HOH
195
6
HOH
HOH
675
A
HOH
196
6
HOH
HOH
676
A
HOH
197
6
HOH
HOH
677
A
HOH
198
6
HOH
HOH
678
A
HOH
199
6
HOH
HOH
679
A
HOH
200
6
HOH
HOH
680
A
HOH
201
6
HOH
HOH
681
A
HOH
202
6
HOH
HOH
682
A
HOH
203
6
HOH
HOH
683
A
HOH
204
6
HOH
HOH
684
A
HOH
205
6
HOH
HOH
685
A
HOH
206
6
HOH
HOH
686
A
HOH
207
6
HOH
HOH
687
A
HOH
208
6
HOH
HOH
688
A
HOH
209
6
HOH
HOH
689
A
HOH
210
6
HOH
HOH
690
A
HOH
211
6
HOH
HOH
691
A
HOH
212
6
HOH
HOH
692
A
HOH
213
6
HOH
HOH
693
A
HOH
214
6
HOH
HOH
694
A
HOH
215
6
HOH
HOH
695
A
HOH
216
6
HOH
HOH
696
A
HOH
217
6
HOH
HOH
697
A
HOH
218
6
HOH
HOH
698
A
HOH
219
6
HOH
HOH
699
A
HOH
220
6
HOH
HOH
700
A
HOH
221
6
HOH
HOH
701
A
HOH
222
6
HOH
HOH
702
A
HOH
223
6
HOH
HOH
703
A
HOH
224
6
HOH
HOH
704
A
HOH
225
6
HOH
HOH
705
A
HOH
226
6
HOH
HOH
706
A
HOH
227
6
HOH
HOH
707
A
HOH
228
6
HOH
HOH
708
A
HOH
229
6
HOH
HOH
709
A
HOH
230
6
HOH
HOH
710
A
HOH
231
6
HOH
HOH
711
A
HOH
232
6
HOH
HOH
712
A
HOH
233
6
HOH
HOH
713
A
HOH
234
6
HOH
HOH
714
A
HOH
235
6
HOH
HOH
715
A
HOH
236
6
HOH
HOH
716
A
HOH
237
6
HOH
HOH
717
A
HOH
238
6
HOH
HOH
718
A
HOH
239
6
HOH
HOH
719
A
HOH
240
6
HOH
HOH
720
A
HOH
241
6
HOH
HOH
721
A
HOH
242
6
HOH
HOH
722
A
HOH
243
6
HOH
HOH
723
A
HOH
244
6
HOH
HOH
724
A
HOH
245
6
HOH
HOH
725
A
HOH
246
6
HOH
HOH
726
A
HOH
247
6
HOH
HOH
727
A
HOH
248
6
HOH
HOH
728
A
HOH
249
6
HOH
HOH
729
A
HOH
250
6
HOH
HOH
730
A
HOH
251
6
HOH
HOH
731
A
HOH
252
6
HOH
HOH
732
A
HOH
253
6
HOH
HOH
733
A
HOH
254
6
HOH
HOH
734
A
HOH
255
6
HOH
HOH
735
A
HOH
256
6
HOH
HOH
736
A
HOH
257
6
HOH
HOH
737
A
HOH
258
6
HOH
HOH
738
A
HOH
259
6
HOH
HOH
739
A
HOH
260
6
HOH
HOH
740
A
HOH
261
6
HOH
HOH
741
A
HOH
262
6
HOH
HOH
742
A
HOH
263
6
HOH
HOH
743
A
HOH
264
6
HOH
HOH
744
A
HOH
265
6
HOH
HOH
745
A
HOH
266
6
HOH
HOH
746
A
HOH
267
6
HOH
HOH
747
A
HOH
268
6
HOH
HOH
748
A
HOH
269
6
HOH
HOH
749
A
HOH
270
6
HOH
HOH
750
A
HOH
271
6
HOH
HOH
751
A
HOH
272
6
HOH
HOH
752
A
n
1
0
A
n
2
24
A
n
3
25
A
n
4
26
A
n
5
27
A
n
6
28
A
SER
29
n
7
SER
29
A
LYS
30
n
8
LYS
30
A
ALA
31
n
9
ALA
31
A
PHE
32
n
10
PHE
32
A
ILE
33
n
11
ILE
33
A
ASP
34
n
12
ASP
34
A
VAL
35
n
13
VAL
35
A
SER
36
n
14
SER
36
A
ALA
37
n
15
ALA
37
A
ALA
38
n
16
ALA
38
A
THR
39
n
17
THR
39
A
LEU
40
n
18
LEU
40
A
TRP
41
n
19
TRP
41
A
THR
42
n
20
THR
42
A
ALA
43
n
21
ALA
43
A
PRO
44
n
22
PRO
44
A
ASP
45
n
23
ASP
45
A
SER
46
n
24
SER
46
A
LEU
47
n
25
LEU
47
A
ARG
48
n
26
ARG
48
A
PRO
49
n
27
PRO
49
A
ILE
50
n
28
ILE
50
A
ASP
51
n
29
ASP
51
A
VAL
52
n
30
VAL
52
A
PRO
53
n
31
PRO
53
A
SER
54
n
32
SER
54
A
ALA
55
n
33
ALA
55
A
THR
56
n
34
THR
56
A
ASN
57
n
35
ASN
57
A
PRO
58
n
36
PRO
58
A
VAL
59
n
37
VAL
59
A
ASP
60
n
38
ASP
60
A
LEU
61
n
39
LEU
61
A
TRP
62
n
40
TRP
62
A
LYS
63
n
41
LYS
63
A
TRP
64
n
42
TRP
64
A
THR
65
n
43
THR
65
A
LYS
66
n
44
LYS
66
A
SER
67
n
45
SER
67
A
MSE
68
n
46
MSE
68
A
THR
69
n
47
THR
69
A
LEU
70
n
48
LEU
70
A
ASP
71
n
49
ASP
71
A
GLU
72
n
50
GLU
72
A
LYS
73
n
51
LYS
73
A
LEU
74
n
52
LEU
74
A
TRP
75
n
53
TRP
75
A
LEU
76
n
54
LEU
76
A
THR
77
n
55
THR
77
A
ASN
78
n
56
ASN
78
A
ALA
79
n
57
ALA
79
A
ASN
80
n
58
ASN
80
A
LYS
81
n
59
LYS
81
A
LEU
82
n
60
LEU
82
A
GLU
83
n
61
GLU
83
A
THR
84
n
62
THR
84
A
GLN
85
n
63
GLN
85
A
ALA
86
n
64
ALA
86
A
LEU
87
n
65
LEU
87
A
LEU
88
n
66
LEU
88
A
GLY
89
n
67
GLY
89
A
GLN
90
n
68
GLN
90
A
GLU
91
n
69
GLU
91
A
VAL
92
n
70
VAL
92
A
THR
93
n
71
THR
93
A
VAL
94
n
72
VAL
94
A
VAL
95
n
73
VAL
95
A
ASP
96
n
74
ASP
96
A
LYS
97
n
75
LYS
97
A
LYS
98
n
76
LYS
98
A
GLY
99
n
77
GLY
99
A
ASP
100
n
78
ASP
100
A
TRP
101
n
79
TRP
101
A
VAL
102
n
80
VAL
102
A
LYS
103
n
81
LYS
103
A
VAL
104
n
82
VAL
104
A
LEU
105
n
83
LEU
105
A
VAL
106
n
84
VAL
106
A
HIS
107
n
85
HIS
107
A
GLY
108
n
86
GLY
108
A
GLN
109
n
87
GLN
109
A
PRO
110
n
88
PRO
110
A
THR
111
n
89
THR
111
A
PRO
112
n
90
PRO
112
A
ARG
113
n
91
ARG
113
A
ASN
114
n
92
ASN
114
A
GLU
115
n
93
GLU
115
A
GLU
116
n
94
GLU
116
A
GLY
117
n
95
GLY
117
A
TYR
118
n
96
TYR
118
A
PRO
119
n
97
PRO
119
A
GLY
120
n
98
GLY
120
A
TRP
121
n
99
TRP
121
A
MSE
122
n
100
MSE
122
A
PRO
123
n
101
PRO
123
A
GLU
124
n
102
GLU
124
A
LYS
125
n
103
LYS
125
A
GLN
126
n
104
GLN
126
A
LEU
127
n
105
LEU
127
A
THR
128
n
106
THR
128
A
TYR
129
n
107
TYR
129
A
ASN
130
n
108
ASN
130
A
GLN
131
n
109
GLN
131
A
GLU
132
n
110
GLU
132
A
PHE
133
n
111
PHE
133
A
ALA
134
n
112
ALA
134
A
ASP
135
n
113
ASP
135
A
LYS
136
n
114
LYS
136
A
THR
137
n
115
THR
137
A
ASN
138
n
116
ASN
138
A
GLU
139
n
117
GLU
139
A
PRO
140
n
118
PRO
140
A
PHE
141
n
119
PHE
141
A
VAL
142
n
120
VAL
142
A
LEU
143
n
121
LEU
143
A
VAL
144
n
122
VAL
144
A
THR
145
n
123
THR
145
A
LYS
146
n
124
LYS
146
A
PRO
147
n
125
PRO
147
A
THR
148
n
126
THR
148
A
ALA
149
n
127
ALA
149
A
ILE
150
n
128
ILE
150
A
LEU
151
n
129
LEU
151
A
TYR
152
n
130
TYR
152
A
ILE
153
n
131
ILE
153
A
ASN
154
n
132
ASN
154
A
PRO
155
n
133
PRO
155
A
SER
156
n
134
SER
156
A
GLU
157
n
135
GLU
157
A
LYS
158
n
136
LYS
158
A
HIS
159
n
137
HIS
159
A
LYS
160
n
138
LYS
160
A
SER
161
n
139
SER
161
A
LEU
162
n
140
LEU
162
A
GLU
163
n
141
GLU
163
A
VAL
164
n
142
VAL
164
A
SER
165
n
143
SER
165
A
TYR
166
n
144
TYR
166
A
ASN
167
n
145
ASN
167
A
THR
168
n
146
THR
168
A
ARG
169
n
147
ARG
169
A
LEU
170
n
148
LEU
170
A
PRO
171
n
149
PRO
171
A
LEU
172
n
150
LEU
172
A
LEU
173
n
151
LEU
173
A
SER
174
n
152
SER
174
A
GLU
175
n
153
GLU
175
A
ASP
176
n
154
ASP
176
A
THR
177
n
155
THR
177
A
ILE
178
n
156
ILE
178
A
SER
179
n
157
SER
179
A
TYR
180
n
158
TYR
180
A
ARG
181
n
159
ARG
181
A
VAL
182
n
160
VAL
182
A
LEU
183
n
161
LEU
183
A
LEU
184
n
162
LEU
184
A
PRO
185
n
163
PRO
185
A
ASN
186
n
164
ASN
186
A
GLY
187
n
165
GLY
187
A
GLN
188
n
166
GLN
188
A
LYS
189
n
167
LYS
189
A
ALA
190
n
168
ALA
190
A
TRP
191
n
169
TRP
191
A
LEU
192
n
170
LEU
192
A
ARG
193
n
171
ARG
193
A
LYS
194
n
172
LYS
194
A
ASN
195
n
173
ASN
195
A
ASP
196
n
174
ASP
196
A
GLY
197
n
175
GLY
197
A
THR
198
n
176
THR
198
A
PHE
199
n
177
PHE
199
A
TYR
200
n
178
TYR
200
A
ARG
201
n
179
ARG
201
A
SER
202
n
180
SER
202
A
GLN
203
n
181
GLN
203
A
ASN
204
n
182
ASN
204
A
ASP
205
n
183
ASP
205
A
ILE
206
n
184
ILE
206
A
PRO
207
n
185
PRO
207
A
THR
208
n
186
THR
208
A
PRO
209
n
187
PRO
209
A
ALA
210
n
188
ALA
210
A
ALA
211
n
189
ALA
211
A
ASP
212
n
190
ASP
212
A
ASP
213
n
191
ASP
213
A
LEU
214
n
192
LEU
214
A
ILE
215
n
193
ILE
215
A
ASN
216
n
194
ASN
216
A
THR
217
n
195
THR
217
A
GLY
218
n
196
GLY
218
A
LYS
219
n
197
LYS
219
A
MSE
220
n
198
MSE
220
A
PHE
221
n
199
PHE
221
A
LEU
222
n
200
LEU
222
A
GLY
223
n
201
GLY
223
A
LEU
224
n
202
LEU
224
A
PRO
225
n
203
PRO
225
A
TYR
226
n
204
TYR
226
A
ILE
227
n
205
ILE
227
A
TRP
228
n
206
TRP
228
A
ALA
229
n
207
ALA
229
A
GLY
230
n
208
GLY
230
A
THR
231
n
209
THR
231
A
SER
232
n
210
SER
232
A
GLY
233
n
211
GLY
233
A
PHE
234
n
212
PHE
234
A
GLY
235
n
213
GLY
235
A
PHE
236
n
214
PHE
236
A
ASP
237
n
215
ASP
237
A
OCS
238
n
216
OCS
238
A
SER
239
n
217
SER
239
A
GLY
240
n
218
GLY
240
A
PHE
241
n
219
PHE
241
A
THR
242
n
220
THR
242
A
HIS
243
n
221
HIS
243
A
THR
244
n
222
THR
244
A
ILE
245
n
223
ILE
245
A
TYR
246
n
224
TYR
246
A
LYS
247
n
225
LYS
247
A
SER
248
n
226
SER
248
A
HIS
249
n
227
HIS
249
A
GLY
250
n
228
GLY
250
A
ILE
251
n
229
ILE
251
A
THR
252
n
230
THR
252
A
ILE
253
n
231
ILE
253
A
PRO
254
n
232
PRO
254
A
ARG
255
n
233
ARG
255
A
ASP
256
n
234
ASP
256
A
SER
257
n
235
SER
257
A
GLY
258
n
236
GLY
258
A
PRO
259
n
237
PRO
259
A
GLN
260
n
238
GLN
260
A
SER
261
n
239
SER
261
A
ARG
262
n
240
ARG
262
A
ASN
263
n
241
ASN
263
A
GLY
264
n
242
GLY
264
A
VAL
265
n
243
VAL
265
A
ALA
266
n
244
ALA
266
A
VAL
267
n
245
VAL
267
A
ASP
268
n
246
ASP
268
A
LYS
269
n
247
LYS
269
A
GLU
270
n
248
GLU
270
A
HIS
271
n
249
HIS
271
A
LEU
272
n
250
LEU
272
A
GLN
273
n
251
GLN
273
A
LYS
274
n
252
LYS
274
A
GLY
275
n
253
GLY
275
A
ASP
276
n
254
ASP
276
A
LEU
277
n
255
LEU
277
A
ILE
278
n
256
ILE
278
A
PHE
279
n
257
PHE
279
A
PHE
280
n
258
PHE
280
A
ALA
281
n
259
ALA
281
A
HIS
282
n
260
HIS
282
A
ASP
283
n
261
ASP
283
A
GLN
284
n
262
GLN
284
A
GLY
285
n
263
GLY
285
A
LYS
286
n
264
LYS
286
A
GLY
287
n
265
GLY
287
A
SER
288
n
266
SER
288
A
VAL
289
n
267
VAL
289
A
HIS
290
n
268
HIS
290
A
HIS
291
n
269
HIS
291
A
VAL
292
n
270
VAL
292
A
ALA
293
n
271
ALA
293
A
MSE
294
n
272
MSE
294
A
TYR
295
n
273
TYR
295
A
ILE
296
n
274
ILE
296
A
GLY
297
n
275
GLY
297
A
ASP
298
n
276
ASP
298
A
GLY
299
n
277
GLY
299
A
ASN
300
n
278
ASN
300
A
MSE
301
n
279
MSE
301
A
ILE
302
n
280
ILE
302
A
HIS
303
n
281
HIS
303
A
SER
304
n
282
SER
304
A
PRO
305
n
283
PRO
305
A
ARG
306
n
284
ARG
306
A
ALA
307
n
285
ALA
307
A
GLU
308
n
286
GLU
308
A
ARG
309
n
287
ARG
309
A
SER
310
n
288
SER
310
A
VAL
311
n
289
VAL
311
A
GLU
312
n
290
GLU
312
A
ILE
313
n
291
ILE
313
A
ILE
314
n
292
ILE
314
A
PRO
315
n
293
PRO
315
A
LEU
316
n
294
LEU
316
A
ASN
317
n
295
ASN
317
A
THR
318
n
296
THR
318
A
PRO
319
n
297
PRO
319
A
GLY
320
n
298
GLY
320
A
TYR
321
n
299
TYR
321
A
ILE
322
n
300
ILE
322
A
GLU
323
n
301
GLU
323
A
GLU
324
n
302
GLU
324
A
TYR
325
n
303
TYR
325
A
ALA
326
n
304
ALA
326
A
GLY
327
n
305
GLY
327
A
ALA
328
n
306
ALA
328
A
ARG
329
n
307
ARG
329
A
ARG
330
n
308
ARG
330
A
TYR
331
n
309
TYR
331
A
LEU
332
n
310
LEU
332
A
PRO
333
n
311
PRO
333
A
author_and_software_defined_assembly
PISA
1
monomeric
A
MSE
68
SELENOMETHIONINE
A
MSE
46
MET
A
MSE
122
SELENOMETHIONINE
A
MSE
100
MET
A
MSE
220
SELENOMETHIONINE
A
MSE
198
MET
A
OCS
238
CYSTEINESULFONIC ACID
A
OCS
216
CYS
A
MSE
294
SELENOMETHIONINE
A
MSE
272
MET
A
MSE
301
SELENOMETHIONINE
A
MSE
279
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
MSE
122
A
O
MSE
100
A
N
VAL
102
A
N
VAL
80
A
O
TRP
101
A
O
TRP
79
A
N
LYS
98
A
N
LYS
76
A
O
VAL
92
A
O
VAL
70
A
N
ALA
31
A
N
ALA
9
A
N
PHE
32
A
N
PHE
10
A
O
THR
128
A
O
THR
106
A
N
LEU
40
A
N
LEU
18
A
O
GLU
83
A
O
GLU
61
A
O
VAL
164
A
O
VAL
142
A
N
ALA
149
A
N
ALA
127
A
N
TYR
152
A
N
TYR
130
A
O
TRP
191
A
O
TRP
169
A
O
ALA
190
A
O
ALA
168
A
N
VAL
182
A
N
VAL
160
A
O
ARG
181
A
O
ARG
159
A
N
LEU
173
A
N
LEU
151
A
O
LEU
170
A
O
LEU
148
A
N
VAL
142
A
N
VAL
120
A
N
LEU
143
A
N
LEU
121
A
O
THR
198
A
O
THR
176
A
N
SER
232
A
N
SER
210
A
O
GLY
235
A
O
GLY
213
A
N
VAL
267
A
N
VAL
245
A
O
ALA
328
A
O
ALA
306
A
O
ALA
326
A
O
ALA
304
A
N
PHE
279
A
N
PHE
257
A
N
ILE
278
A
N
ILE
256
A
O
ALA
293
A
O
ALA
271
A
N
MSE
294
A
N
MSE
272
A
O
ILE
302
A
O
ILE
280
A
N
MSE
301
A
N
MSE
279
A
O
ILE
314
A
O
ILE
292
1
A
CD
ARG
201
A
CD
ARG
179
1
Y
1
A
NE
ARG
201
A
NE
ARG
179
1
Y
1
A
CZ
ARG
201
A
CZ
ARG
179
1
Y
1
A
NH1
ARG
201
A
NH1
ARG
179
1
Y
1
A
NH2
ARG
201
A
NH2
ARG
179
1
Y
1
A
CG
GLU
270
A
CG
GLU
248
1
Y
1
A
CD
GLU
270
A
CD
GLU
248
1
Y
1
A
OE1
GLU
270
A
OE1
GLU
248
1
Y
1
A
OE2
GLU
270
A
OE2
GLU
248
1
Y
1
A
C7
PG4
3
F
C7
PG4
1
1
N
1
A
C8
PG4
3
F
C8
PG4
1
1
N
1
A
O5
PG4
3
F
O5
PG4
1
1
N
1
A
C5
PG4
4
G
C5
PG4
1
1
N
1
A
C6
PG4
4
G
C6
PG4
1
1
N
1
A
O4
PG4
4
G
O4
PG4
1
1
N
1
A
C7
PG4
4
G
C7
PG4
1
1
N
1
A
C8
PG4
4
G
C8
PG4
1
1
N
1
A
O5
PG4
4
G
O5
PG4
1
1
N
1
A
C7
PG4
5
H
C7
PG4
1
1
N
1
A
C8
PG4
5
H
C8
PG4
1
1
N
1
A
O5
PG4
5
H
O5
PG4
1
1
N
1
A
C5
PG4
7
J
C5
PG4
1
1
N
1
A
C6
PG4
7
J
C6
PG4
1
1
N
1
A
O4
PG4
7
J
O4
PG4
1
1
N
1
A
C7
PG4
7
J
C7
PG4
1
1
N
1
A
C8
PG4
7
J
C8
PG4
1
1
N
1
A
O5
PG4
7
J
O5
PG4
1
1
N
1
A
GLY
0
A
GLY
1
1
Y
1
A
GLU
24
A
GLU
2
1
Y
1
A
GLU
25
A
GLU
3
1
Y
1
A
LYS
26
A
LYS
4
1
Y
1
A
LYS
27
A
LYS
5
1
Y
1
A
ASP
28
A
ASP
6
1
Y
1
A
A
OD2
ND1
OCS
HIS
238
291
2.10
A
1
A
A
O
O
HOH
HOH
562
746
2.18
1
A
A
OE2
O1
GLU
PO4
157
1
2.18
1_555
2_655
1
A
LEU
88
-36.32
127.58
1
A
TYR
166
-34.08
134.47
1
A
ASN
167
83.98
2.19
1
A
ASP
176
-119.92
-163.97
1
A
THR
231
-140.99
37.86
65.68
19.859
7.59
-0.380
0.000
-0.500
-0.490
0.000
0.640
0.958
0.943
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. RAMACHANDRAN OUTLIER PRO305 IS SUPPORTED BY DENSITY. 4. CYS238 IS OXIDIZED AS CYSTEINE SULFONIC ACID (OCS). 5. THE ALA-D-GAMMA-GLU MODELED IN THE ACTIVE SITE IS BASED ON DENSITY AND FUNCTION OF THE PROTEIN. PHOSPHATE AND PEG FRAGEMENTS ARE PRESENTS IN CRYSTALLIZATION CONDITIONS.
0.197
0.163
0.165
1.790
41.523
1564
31083
5.000
97.980
1.00
0.30
2.305
0.071
RANDOM
1
THROUGHOUT
0.00
MAD
0.117
0.111
0.800
0.800
1.200
MAXIMUM LIKELIHOOD WITH PHASES
MASK
1.790
41.523
265
2754
80
0
2409
0.015
0.022
2615
0.001
0.020
1800
1.499
1.973
3558
0.914
3.000
4421
6.563
5.000
327
31.371
24.336
113
12.889
15.000
420
21.671
15.000
12
0.089
0.200
383
0.008
0.021
2856
0.001
0.020
500
1.823
3.000
1567
0.571
3.000
624
2.866
5.000
2557
4.588
8.000
1048
6.708
11.000
990
0.279
0.250
1.833
119
2083
2202
20
94.380
16.976
1.79
41.523
3H41
31085
-3.00
0.111
1
9.590
97.100
0.771
1.78
1.84
1.8
9426
2578
86.20
0.574
1.84
1.92
2.5
12802
3378
97.10
0.399
1.92
2.00
3.6
10804
2853
97.80
0.299
2.00
2.11
4.7
12341
3255
97.90
0.214
2.11
2.24
6.3
11745
3098
98.20
0.171
2.24
2.41
7.7
11574
3069
98.40
0.145
2.41
2.66
9.0
12488
3300
98.60
0.101
2.66
3.04
12.2
11682
3107
98.90
0.055
3.04
3.83
19.6
11982
3191
98.70
0.042
3.83
41.523
26.5
11969
3253
98.40
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.5.0053
refinement
P.D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data reduction
XDS
phasing
SHELXD
phasing
autoSHARP
CRYSTAL STRUCTURE OF A NLPC/P60 FAMILY PROTEIN (BCE_2878) FROM BACILLUS CEREUS ATCC 10987 AT 1.79 A RESOLUTION
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
6
N
N
A
ARG
48
A
ARG
26
HELX_P
A
ILE
50
A
ILE
28
5
1
3
A
ASP
51
A
ASP
29
HELX_P
A
THR
56
A
THR
34
1
2
6
A
ASP
60
A
ASP
38
HELX_P
A
MSE
68
A
MSE
46
1
3
9
A
THR
69
A
THR
47
HELX_P
A
ALA
79
A
ALA
57
1
4
11
A
ASN
130
A
ASN
108
HELX_P
A
LYS
136
A
LYS
114
1
5
7
A
SER
202
A
SER
180
HELX_P
A
ILE
206
A
ILE
184
5
6
5
A
ALA
210
A
ALA
188
HELX_P
A
MSE
220
A
MSE
198
1
7
11
A
ASP
237
A
ASP
215
HELX_P
A
SER
248
A
SER
226
1
8
12
A
ASP
256
A
ASP
234
HELX_P
A
SER
261
A
SER
239
1
9
6
A
ASP
268
A
ASP
246
HELX_P
A
LEU
272
A
LEU
250
5
10
5
A
HIS
282
A
HIS
260
HELX_P
A
LYS
286
A
LYS
264
1
11
5
A
GLY
320
A
GLY
298
HELX_P
A
GLU
324
A
GLU
302
1
12
5
covale
1.335
both
A
SER
67
A
C
SER
45
1_555
A
MSE
68
A
N
MSE
46
1_555
covale
1.321
both
A
MSE
68
A
C
MSE
46
1_555
A
THR
69
A
N
THR
47
1_555
covale
1.327
both
A
TRP
121
A
C
TRP
99
1_555
A
MSE
122
A
N
MSE
100
1_555
covale
1.348
both
A
MSE
122
A
C
MSE
100
1_555
A
PRO
123
A
N
PRO
101
1_555
covale
1.343
both
A
LYS
219
A
C
LYS
197
1_555
A
MSE
220
A
N
MSE
198
1_555
covale
1.333
both
A
MSE
220
A
C
MSE
198
1_555
A
PHE
221
A
N
PHE
199
1_555
covale
1.322
both
A
ASP
237
A
C
ASP
215
1_555
A
OCS
238
A
N
OCS
216
1_555
covale
1.336
both
A
OCS
238
A
C
OCS
216
1_555
A
SER
239
A
N
SER
217
1_555
covale
1.322
both
A
ALA
293
A
C
ALA
271
1_555
A
MSE
294
A
N
MSE
272
1_555
covale
1.331
both
A
MSE
294
A
C
MSE
272
1_555
A
TYR
295
A
N
TYR
273
1_555
covale
1.327
both
A
ASN
300
A
C
ASN
278
1_555
A
MSE
301
A
N
MSE
279
1_555
covale
1.325
both
A
MSE
301
A
C
MSE
279
1_555
A
ILE
302
A
N
ILE
280
1_555
covale
1.334
both
A
ALA
501
B
C
ALA
1_555
A
DGL
502
C
N
DGL
1_555
HYDROLASE
NLPC/P60 FAMILY PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE
A
ASN
57
A
ASN
35
1
A
PRO
58
A
PRO
36
0.91
A
ASN
154
A
ASN
132
1
A
PRO
155
A
PRO
133
2.57
Q736M3_BACC1
UNP
1
24
Q736M3
EEKKDSKAFIDVSAATLWTAPDSLRPIDVPSATNPVDLWKWTKSMTLDEKLWLTNANKLETQALLGQEVTVVDKKGDWVK
VLVHGQPTPRNEEGYPGWMPEKQLTYNQEFADKTNEPFVLVTKPTAILYINPSEKHKSLEVSYNTRLPLLSEDTISYRVL
LPNGQKAWLRKNDGTFYRSQNDIPTPAADDLINTGKMFLGLPYIWAGTSGFGFDCSGFTHTIYKSHGITIPRDSGPQSRN
GVAVDKEHLQKGDLIFFAHDQGKGSVHHVAMYIGDGNMIHSPRAERSVEIIPLNTPGYIEEYAGARRYLP
24
333
3H41
24
333
Q736M3
A
1
2
311
1
expression tag
GLY
0
3H41
A
Q736M3
UNP
1
5
2
7
2
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
118
A
TYR
96
A
PRO
123
A
PRO
101
A
TRP
101
A
TRP
79
A
VAL
106
A
VAL
84
A
GLU
91
A
GLU
69
A
LYS
98
A
LYS
76
A
LYS
30
A
LYS
8
A
ILE
33
A
ILE
11
A
LEU
127
A
LEU
105
A
THR
128
A
THR
106
A
ALA
37
A
ALA
15
A
TRP
41
A
TRP
19
A
LEU
82
A
LEU
60
A
LEU
87
A
LEU
65
A
SER
161
A
SER
139
A
SER
165
A
SER
143
A
THR
148
A
THR
126
A
ILE
153
A
ILE
131
A
LYS
189
A
LYS
167
A
ARG
193
A
ARG
171
A
SER
179
A
SER
157
A
LEU
183
A
LEU
161
A
ARG
169
A
ARG
147
A
GLU
175
A
GLU
153
A
PHE
141
A
PHE
119
A
VAL
144
A
VAL
122
A
GLY
197
A
GLY
175
A
TYR
200
A
TYR
178
A
THR
231
A
THR
209
A
SER
232
A
SER
210
A
GLY
235
A
GLY
213
A
PHE
236
A
PHE
214
A
VAL
265
A
VAL
243
A
VAL
267
A
VAL
245
A
TYR
325
A
TYR
303
A
ARG
330
A
ARG
308
A
LEU
277
A
LEU
255
A
ALA
281
A
ALA
259
A
VAL
289
A
VAL
267
A
GLY
297
A
GLY
275
A
ASN
300
A
ASN
278
A
HIS
303
A
HIS
281
A
GLU
312
A
GLU
290
A
PRO
315
A
PRO
293
BINDING SITE FOR RESIDUE ALA A 501
A
ALA
501
Software
7
BINDING SITE FOR RESIDUE DGL A 502
A
DGL
502
Software
10
BINDING SITE FOR RESIDUE PO4 A 1
A
PO4
1
Software
8
BINDING SITE FOR RESIDUE PG4 A 2
A
PG4
2
Software
4
BINDING SITE FOR RESIDUE PG4 A 3
A
PG4
3
Software
6
BINDING SITE FOR RESIDUE PG4 A 4
A
PG4
4
Software
6
BINDING SITE FOR RESIDUE PG4 A 5
A
PG4
5
Software
6
BINDING SITE FOR RESIDUE PG4 A 6
A
PG4
6
Software
7
BINDING SITE FOR RESIDUE PG4 A 7
A
PG4
7
Software
9
A
GLU
83
A
GLU
61
7
1_555
A
TYR
118
A
TYR
96
7
1_555
A
TRP
228
A
TRP
206
7
1_555
A
ASP
237
A
ASP
215
7
1_555
A
ASP
256
A
ASP
234
7
1_555
A
DGL
502
C
DGL
7
1_555
A
HOH
583
K
HOH
7
1_555
A
TRP
228
A
TRP
206
10
1_555
A
ASP
237
A
ASP
215
10
1_555
A
OCS
238
A
OCS
216
10
1_555
A
SER
239
A
SER
217
10
1_555
A
ASP
256
A
ASP
234
10
1_555
A
SER
257
A
SER
235
10
1_555
A
HIS
290
A
HIS
268
10
1_555
A
ALA
501
B
ALA
10
1_555
A
HOH
555
K
HOH
10
1_555
A
HOH
722
K
HOH
10
1_555
A
SER
156
A
SER
134
8
1_555
A
GLU
157
A
GLU
135
8
2_655
A
GLU
157
A
GLU
135
8
1_555
A
LYS
158
A
LYS
136
8
1_555
A
LYS
160
A
LYS
138
8
1_555
A
GLN
188
A
GLN
166
8
1_555
A
HOH
609
K
HOH
8
1_555
A
HOH
620
K
HOH
8
1_555
A
ILE
215
A
ILE
193
4
1_555
A
ASN
216
A
ASN
194
4
1_555
A
LYS
219
A
LYS
197
4
1_555
A
ILE
296
A
ILE
274
4
1_555
A
LEU
47
A
LEU
25
6
1_555
A
THR
56
A
THR
34
6
1_555
A
ASP
100
A
ASP
78
6
1_555
A
LYS
125
A
LYS
103
6
1_555
A
HOH
541
K
HOH
6
1_555
A
HOH
702
K
HOH
6
1_555
A
ASP
34
A
ASP
12
6
1_555
A
ILE
153
A
ILE
131
6
1_555
A
PRO
185
A
PRO
163
6
1_555
A
ASN
186
A
ASN
164
6
1_555
A
HOH
511
K
HOH
6
1_555
A
HOH
603
K
HOH
6
1_555
A
THR
208
A
THR
186
6
4_546
A
ALA
210
A
ALA
188
6
4_546
A
GLY
258
A
GLY
236
6
1_555
A
ARG
262
A
ARG
240
6
1_555
A
SER
288
A
SER
266
6
1_555
A
HOH
622
K
HOH
6
4_546
A
ASN
154
A
ASN
132
7
1_555
A
SER
174
A
SER
152
7
1_555
A
ASP
176
A
ASP
154
7
1_555
A
ILE
178
A
ILE
156
7
1_555
A
SER
179
A
SER
157
7
1_555
A
TRP
191
A
TRP
169
7
1_555
A
HOH
569
K
HOH
7
1_555
A
MSE
68
A
MSE
46
9
1_555
A
THR
69
A
THR
47
9
1_555
A
LEU
70
A
LEU
48
9
1_555
A
LYS
73
A
LYS
51
9
1_555
A
ALA
307
A
ALA
285
9
1_555
A
GLU
308
A
GLU
286
9
1_555
A
ARG
309
A
ARG
287
9
1_555
A
SER
310
A
SER
288
9
1_555
A
HOH
559
K
HOH
9
1_555
5
C 1 2 1