0.008117
0.000000
0.000000
0.000000
0.008117
0.000000
0.000000
0.000000
0.014868
0.00000
0.00000
0.00000
Bell, C.E.
Zhang, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
123.200
123.200
67.260
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
N
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
UK
Structure
STRUE6
2005
0969-2126
17
690
702
10.1016/j.str.2009.03.008
19446525
Crystal structure of E. coli RecE protein reveals a toroidal tetramer for processing double-stranded DNA breaks.
2009
10.2210/pdb3h4r/pdb
pdb_00003h4r
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2007-12-09
MAR CCD 165 mm
Kohzu HLD-4 Diamond(111) Double Crystal
SINGLE WAVELENGTH
M
x-ray
1
0.97929
1.0
31-ID
APS
0.97929
SYNCHROTRON
APS BEAMLINE 31-ID
30403.252
Exodeoxyribonuclease 8
3.1.11.-
C-terminal domain: UNP residues 606-866
P658L
1
man
polymer
Exodeoxyribonuclease VIII, EXO VIII
no
no
GSHMENYHAGPGISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLELEEFSNRFIVAPEFNRRTNAGKEE
EKAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKIIPEFHWIMDVK
TTADIQRFKTAYYDYRYHVQDAFYSDGYEAQFGVQPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHRNLRTLSD
CLNTDEWPAIKTLSLPRWAKEYAND
GSHMENYHAGPGISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLELEEFSNRFIVAPEFNRRTNAGKEE
EKAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKIIPEFHWIMDVK
TTADIQRFKTAYYDYRYHVQDAFYSDGYEAQFGVQPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHRNLRTLSD
CLNTDEWPAIKTLSLPRWAKEYAND
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
K-12
sample
b1350, JW1344, recE
83333
Escherichia coli
562
Escherichia coli
BL21(AI)
Plasmid
pET14b
1
4.20
70.70
VAPOR DIFFUSION, HANGING DROP
7.0
30-42% Glycerol, 100 mM DL-malic acid, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
database_2
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
repository
Initial release
Source and taxonomy
Version format compliance
Database references
Refinement description
Database references
Data collection
1
0
2009-05-26
1
1
2011-07-13
1
2
2011-12-07
1
3
2017-11-01
1
4
2021-10-13
1
5
2024-02-21
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2009-04-20
REL
REL
n
1
-3
A
n
2
-2
A
n
3
-1
A
n
4
0
A
n
5
606
A
n
6
607
A
n
7
608
A
n
8
609
A
n
9
610
A
n
10
611
A
PRO
612
n
11
PRO
612
A
GLY
613
n
12
GLY
613
A
ILE
614
n
13
ILE
614
A
SER
615
n
14
SER
615
A
LYS
616
n
15
LYS
616
A
SER
617
n
16
SER
617
A
GLN
618
n
17
GLN
618
A
LEU
619
n
18
LEU
619
A
ASP
620
n
19
ASP
620
A
ASP
621
n
20
ASP
621
A
ILE
622
n
21
ILE
622
A
ALA
623
n
22
ALA
623
A
ASP
624
n
23
ASP
624
A
THR
625
n
24
THR
625
A
PRO
626
n
25
PRO
626
A
ALA
627
n
26
ALA
627
A
LEU
628
n
27
LEU
628
A
TYR
629
n
28
TYR
629
A
LEU
630
n
29
LEU
630
A
TRP
631
n
30
TRP
631
A
ARG
632
n
31
ARG
632
A
LYS
633
n
32
LYS
633
A
ASN
634
n
33
ASN
634
A
ALA
635
n
34
ALA
635
A
PRO
636
n
35
PRO
636
A
VAL
637
n
36
VAL
637
A
ASP
638
n
37
ASP
638
A
THR
639
n
38
THR
639
A
THR
640
n
39
THR
640
A
LYS
641
n
40
LYS
641
A
THR
642
n
41
THR
642
A
LYS
643
n
42
LYS
643
A
THR
644
n
43
THR
644
A
LEU
645
n
44
LEU
645
A
ASP
646
n
45
ASP
646
A
LEU
647
n
46
LEU
647
A
GLY
648
n
47
GLY
648
A
THR
649
n
48
THR
649
A
ALA
650
n
49
ALA
650
A
PHE
651
n
50
PHE
651
A
HIS
652
n
51
HIS
652
A
CYS
653
n
52
CYS
653
A
ARG
654
n
53
ARG
654
A
VAL
655
n
54
VAL
655
A
LEU
656
n
55
LEU
656
A
GLU
657
n
56
GLU
657
A
LEU
658
n
57
LEU
658
A
GLU
659
n
58
GLU
659
A
GLU
660
n
59
GLU
660
A
PHE
661
n
60
PHE
661
A
SER
662
n
61
SER
662
A
ASN
663
n
62
ASN
663
A
ALA
664
n
63
ARG
664
A
n
64
665
A
n
65
666
A
n
66
667
A
n
67
668
A
n
68
669
A
n
69
670
A
n
70
671
A
n
71
672
A
n
72
673
A
n
73
674
A
n
74
675
A
n
75
676
A
n
76
677
A
n
77
678
A
n
78
679
A
n
79
680
A
n
80
681
A
n
81
682
A
n
82
683
A
n
83
684
A
n
84
685
A
n
85
686
A
n
86
687
A
n
87
688
A
n
88
689
A
n
89
690
A
n
90
691
A
n
91
692
A
n
92
693
A
n
93
694
A
n
94
695
A
n
95
696
A
n
96
697
A
n
97
698
A
ALA
699
n
98
ALA
699
A
GLU
700
n
99
GLU
700
A
GLU
701
n
100
GLU
701
A
GLY
702
n
101
GLY
702
A
ARG
703
n
102
ARG
703
A
LYS
704
n
103
LYS
704
A
ILE
705
n
104
ILE
705
A
GLU
706
n
105
GLU
706
A
LEU
707
n
106
LEU
707
A
MET
708
n
107
MET
708
A
TYR
709
n
108
TYR
709
A
GLN
710
n
109
GLN
710
A
SER
711
n
110
SER
711
A
VAL
712
n
111
VAL
712
A
MET
713
n
112
MET
713
A
ALA
714
n
113
ALA
714
A
LEU
715
n
114
LEU
715
A
PRO
716
n
115
PRO
716
A
LEU
717
n
116
LEU
717
A
GLY
718
n
117
GLY
718
A
GLN
719
n
118
GLN
719
A
TRP
720
n
119
TRP
720
A
LEU
721
n
120
LEU
721
A
VAL
722
n
121
VAL
722
A
GLU
723
n
122
GLU
723
A
SER
724
n
123
SER
724
A
ALA
725
n
124
ALA
725
A
GLY
726
n
125
GLY
726
A
HIS
727
n
126
HIS
727
A
ALA
728
n
127
ALA
728
A
GLU
729
n
128
GLU
729
A
SER
730
n
129
SER
730
A
SER
731
n
130
SER
731
A
ILE
732
n
131
ILE
732
A
TYR
733
n
132
TYR
733
A
TRP
734
n
133
TRP
734
A
GLU
735
n
134
GLU
735
A
ASP
736
n
135
ASP
736
A
PRO
737
n
136
PRO
737
A
GLU
738
n
137
GLU
738
A
THR
739
n
138
THR
739
A
GLY
740
n
139
GLY
740
A
ILE
741
n
140
ILE
741
A
LEU
742
n
141
LEU
742
A
CYS
743
n
142
CYS
743
A
ARG
744
n
143
ARG
744
A
CYS
745
n
144
CYS
745
A
ARG
746
n
145
ARG
746
A
PRO
747
n
146
PRO
747
A
ASP
748
n
147
ASP
748
A
LYS
749
n
148
LYS
749
A
ILE
750
n
149
ILE
750
A
ILE
751
n
150
ILE
751
A
PRO
752
n
151
PRO
752
A
GLU
753
n
152
GLU
753
A
PHE
754
n
153
PHE
754
A
HIS
755
n
154
HIS
755
A
TRP
756
n
155
TRP
756
A
ILE
757
n
156
ILE
757
A
MET
758
n
157
MET
758
A
ASP
759
n
158
ASP
759
A
VAL
760
n
159
VAL
760
A
LYS
761
n
160
LYS
761
A
THR
762
n
161
THR
762
A
THR
763
n
162
THR
763
A
ALA
764
n
163
ALA
764
A
ASP
765
n
164
ASP
765
A
ILE
766
n
165
ILE
766
A
GLN
767
n
166
GLN
767
A
ARG
768
n
167
ARG
768
A
PHE
769
n
168
PHE
769
A
LYS
770
n
169
LYS
770
A
THR
771
n
170
THR
771
A
ALA
772
n
171
ALA
772
A
TYR
773
n
172
TYR
773
A
TYR
774
n
173
TYR
774
A
ASP
775
n
174
ASP
775
A
TYR
776
n
175
TYR
776
A
ARG
777
n
176
ARG
777
A
TYR
778
n
177
TYR
778
A
HIS
779
n
178
HIS
779
A
VAL
780
n
179
VAL
780
A
GLN
781
n
180
GLN
781
A
ASP
782
n
181
ASP
782
A
ALA
783
n
182
ALA
783
A
PHE
784
n
183
PHE
784
A
TYR
785
n
184
TYR
785
A
SER
786
n
185
SER
786
A
ASP
787
n
186
ASP
787
A
GLY
788
n
187
GLY
788
A
TYR
789
n
188
TYR
789
A
GLU
790
n
189
GLU
790
A
ALA
791
n
190
ALA
791
A
GLN
792
n
191
GLN
792
A
PHE
793
n
192
PHE
793
A
GLY
794
n
193
GLY
794
A
VAL
795
n
194
VAL
795
A
GLN
796
n
195
GLN
796
A
PRO
797
n
196
PRO
797
A
THR
798
n
197
THR
798
A
PHE
799
n
198
PHE
799
A
VAL
800
n
199
VAL
800
A
PHE
801
n
200
PHE
801
A
LEU
802
n
201
LEU
802
A
VAL
803
n
202
VAL
803
A
ALA
804
n
203
ALA
804
A
SER
805
n
204
SER
805
A
THR
806
n
205
THR
806
A
THR
807
n
206
THR
807
A
ILE
808
n
207
ILE
808
A
GLU
809
n
208
GLU
809
A
CYS
810
n
209
CYS
810
A
GLY
811
n
210
GLY
811
A
ARG
812
n
211
ARG
812
A
TYR
813
n
212
TYR
813
A
PRO
814
n
213
PRO
814
A
VAL
815
n
214
VAL
815
A
GLU
816
n
215
GLU
816
A
ILE
817
n
216
ILE
817
A
PHE
818
n
217
PHE
818
A
MET
819
n
218
MET
819
A
MET
820
n
219
MET
820
A
GLY
821
n
220
GLY
821
A
GLU
822
n
221
GLU
822
A
GLU
823
n
222
GLU
823
A
ALA
824
n
223
ALA
824
A
LYS
825
n
224
LYS
825
A
LEU
826
n
225
LEU
826
A
ALA
827
n
226
ALA
827
A
GLY
828
n
227
GLY
828
A
GLN
829
n
228
GLN
829
A
GLN
830
n
229
GLN
830
A
GLU
831
n
230
GLU
831
A
TYR
832
n
231
TYR
832
A
HIS
833
n
232
HIS
833
A
ARG
834
n
233
ARG
834
A
ASN
835
n
234
ASN
835
A
LEU
836
n
235
LEU
836
A
ARG
837
n
236
ARG
837
A
THR
838
n
237
THR
838
A
LEU
839
n
238
LEU
839
A
SER
840
n
239
SER
840
A
ASP
841
n
240
ASP
841
A
CYS
842
n
241
CYS
842
A
LEU
843
n
242
LEU
843
A
ASN
844
n
243
ASN
844
A
THR
845
n
244
THR
845
A
ASP
846
n
245
ASP
846
A
GLU
847
n
246
GLU
847
A
TRP
848
n
247
TRP
848
A
PRO
849
n
248
PRO
849
A
ALA
850
n
249
ALA
850
A
ILE
851
n
250
ILE
851
A
LYS
852
n
251
LYS
852
A
THR
853
n
252
THR
853
A
LEU
854
n
253
LEU
854
A
SER
855
n
254
SER
855
A
LEU
856
n
255
LEU
856
A
PRO
857
n
256
PRO
857
A
ARG
858
n
257
ARG
858
A
TRP
859
n
258
TRP
859
A
ALA
860
n
259
ALA
860
A
LYS
861
n
260
LYS
861
A
GLU
862
n
261
GLU
862
A
TYR
863
n
262
TYR
863
A
ALA
864
n
263
ALA
864
A
n
264
865
A
n
265
866
A
author_and_software_defined_assembly
PISA
4
tetrameric
10840
-59.7
41690
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_545
-x,-y-1,z
crystal symmetry operation
0.0000000000
-123.2000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_445
-y-1/2,x-1/2,z
crystal symmetry operation
-61.6000000000
-61.6000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_545
y+1/2,-x-1/2,z
crystal symmetry operation
61.6000000000
-61.6000000000
0.0000000000
A
N
TRP
734
A
N
TRP
133
A
O
CYS
743
A
O
CYS
142
A
N
ILE
751
A
N
ILE
150
A
O
TRP
756
A
O
TRP
155
A
N
ILE
757
A
N
ILE
156
A
O
THR
798
A
O
THR
197
A
N
PHE
801
A
N
PHE
200
A
O
PHE
818
A
O
PHE
217
1
A
CG1
VAL
637
A
CG1
VAL
36
1
Y
1
A
CG2
VAL
637
A
CG2
VAL
36
1
Y
1
A
CG
ASP
638
A
CG
ASP
37
1
Y
1
A
OD1
ASP
638
A
OD1
ASP
37
1
Y
1
A
OD2
ASP
638
A
OD2
ASP
37
1
Y
1
A
OG1
THR
639
A
OG1
THR
38
1
Y
1
A
CG2
THR
639
A
CG2
THR
38
1
Y
1
A
OG1
THR
640
A
OG1
THR
39
1
Y
1
A
CG2
THR
640
A
CG2
THR
39
1
Y
1
A
CG
LYS
641
A
CG
LYS
40
1
Y
1
A
CD
LYS
641
A
CD
LYS
40
1
Y
1
A
CE
LYS
641
A
CE
LYS
40
1
Y
1
A
NZ
LYS
641
A
NZ
LYS
40
1
Y
1
A
OG1
THR
642
A
OG1
THR
41
1
Y
1
A
CG2
THR
642
A
CG2
THR
41
1
Y
1
A
CG
LYS
643
A
CG
LYS
42
1
Y
1
A
CD
LYS
643
A
CD
LYS
42
1
Y
1
A
CE
LYS
643
A
CE
LYS
42
1
Y
1
A
NZ
LYS
643
A
NZ
LYS
42
1
Y
1
A
OG1
THR
644
A
OG1
THR
43
1
Y
1
A
CG2
THR
644
A
CG2
THR
43
1
Y
1
A
CG
LEU
645
A
CG
LEU
44
1
Y
1
A
CD1
LEU
645
A
CD1
LEU
44
1
Y
1
A
CD2
LEU
645
A
CD2
LEU
44
1
Y
1
A
CG
ASP
646
A
CG
ASP
45
1
Y
1
A
OD1
ASP
646
A
OD1
ASP
45
1
Y
1
A
OD2
ASP
646
A
OD2
ASP
45
1
Y
1
A
CG
ARG
664
A
CG
ARG
63
1
Y
1
A
CD
ARG
664
A
CD
ARG
63
1
Y
1
A
NE
ARG
664
A
NE
ARG
63
1
Y
1
A
CZ
ARG
664
A
CZ
ARG
63
1
Y
1
A
NH1
ARG
664
A
NH1
ARG
63
1
Y
1
A
NH2
ARG
664
A
NH2
ARG
63
1
Y
1
A
CG
GLU
700
A
CG
GLU
99
1
Y
1
A
CD
GLU
700
A
CD
GLU
99
1
Y
1
A
OE1
GLU
700
A
OE1
GLU
99
1
Y
1
A
OE2
GLU
700
A
OE2
GLU
99
1
Y
1
A
CG
GLU
701
A
CG
GLU
100
1
Y
1
A
CD
GLU
701
A
CD
GLU
100
1
Y
1
A
OE1
GLU
701
A
OE1
GLU
100
1
Y
1
A
OE2
GLU
701
A
OE2
GLU
100
1
Y
1
A
CG
LYS
704
A
CG
LYS
103
1
Y
1
A
CD
LYS
704
A
CD
LYS
103
1
Y
1
A
CE
LYS
704
A
CE
LYS
103
1
Y
1
A
NZ
LYS
704
A
NZ
LYS
103
1
Y
1
A
GLY
-3
A
GLY
1
1
Y
1
A
SER
-2
A
SER
2
1
Y
1
A
HIS
-1
A
HIS
3
1
Y
1
A
MET
0
A
MET
4
1
Y
1
A
GLU
606
A
GLU
5
1
Y
1
A
ASN
607
A
ASN
6
1
Y
1
A
TYR
608
A
TYR
7
1
Y
1
A
HIS
609
A
HIS
8
1
Y
1
A
ALA
610
A
ALA
9
1
Y
1
A
GLY
611
A
GLY
10
1
Y
1
A
PHE
665
A
PHE
64
1
Y
1
A
ILE
666
A
ILE
65
1
Y
1
A
VAL
667
A
VAL
66
1
Y
1
A
ALA
668
A
ALA
67
1
Y
1
A
PRO
669
A
PRO
68
1
Y
1
A
GLU
670
A
GLU
69
1
Y
1
A
PHE
671
A
PHE
70
1
Y
1
A
ASN
672
A
ASN
71
1
Y
1
A
ARG
673
A
ARG
72
1
Y
1
A
ARG
674
A
ARG
73
1
Y
1
A
THR
675
A
THR
74
1
Y
1
A
ASN
676
A
ASN
75
1
Y
1
A
ALA
677
A
ALA
76
1
Y
1
A
GLY
678
A
GLY
77
1
Y
1
A
LYS
679
A
LYS
78
1
Y
1
A
GLU
680
A
GLU
79
1
Y
1
A
GLU
681
A
GLU
80
1
Y
1
A
GLU
682
A
GLU
81
1
Y
1
A
LYS
683
A
LYS
82
1
Y
1
A
ALA
684
A
ALA
83
1
Y
1
A
PHE
685
A
PHE
84
1
Y
1
A
LEU
686
A
LEU
85
1
Y
1
A
MET
687
A
MET
86
1
Y
1
A
GLU
688
A
GLU
87
1
Y
1
A
CYS
689
A
CYS
88
1
Y
1
A
ALA
690
A
ALA
89
1
Y
1
A
SER
691
A
SER
90
1
Y
1
A
THR
692
A
THR
91
1
Y
1
A
GLY
693
A
GLY
92
1
Y
1
A
LYS
694
A
LYS
93
1
Y
1
A
THR
695
A
THR
94
1
Y
1
A
VAL
696
A
VAL
95
1
Y
1
A
ILE
697
A
ILE
96
1
Y
1
A
THR
698
A
THR
97
1
Y
1
A
ASN
865
A
ASN
264
1
Y
1
A
ASP
866
A
ASP
265
1
Y
1
A
TYR
863
0.069
SIDE CHAIN
1
A
PRO
626
-37.52
-38.35
1
A
LEU
628
-49.67
-13.42
1
A
LYS
633
-78.27
49.80
1
A
ASN
634
-173.78
-46.68
1
A
THR
639
-48.08
87.49
1
A
THR
640
-163.49
54.07
1
A
LYS
641
-54.89
86.77
1
A
LYS
643
177.50
-30.44
1
A
ASP
646
-67.49
34.42
1
A
LEU
656
-89.44
-75.72
1
A
ASN
663
-91.25
-152.24
1
A
GLU
723
-83.72
-115.32
1
A
SER
724
46.03
-169.62
1
A
ALA
728
-101.49
-107.76
1
A
GLU
729
-60.42
7.25
1
A
LYS
770
-34.09
-10.92
1
A
ALA
791
-64.71
50.41
1
A
GLN
792
175.27
-19.89
1
A
THR
806
-104.55
51.32
1
A
THR
807
-164.75
79.60
1
A
ILE
808
-35.90
143.06
1
A
GLU
822
-29.89
-49.20
1
A
ASP
846
13.72
27.07
1
A
LEU
856
-37.54
143.27
1
A
GLU
862
-58.63
8.58
1
A
TYR
863
176.15
96.42
protein_rep.param
protein.top
97.3
-25.55
0.00
0.00
-25.55
0.00
51.09
BULK SOLVENT MODEL USED
0.313
0.012
0.290
0.290
2.80
45.43
656
13172
5.0
99.4
RANDOM
3811437.52
0.000000
1
RESTRAINED
THROUGHOUT
2.0
SAD
Engh & Huber
FLAT MODEL
65.5675
0.35
0.58
0.52
5.00
0.99
0.83
2.80
45.43
0
1736
0
0
1736
0.009
1.4
23.5
0.89
1.48
1.50
2.59
2.00
1.67
2.00
2.69
2.50
0.473
0.045
0.476
2.98
112
2028
6
5.2
99.9
33.1
2.80
50.0
3H4R
13172
13172
0.080
1
19.6
23.5
99.4
0.700
2.80
2.95
3.3
1
23.4
100
data collection
MAR345
CCD
model building
PHENIX
refinement
CNS
1.2
data reduction
MOSFLM
data scaling
SCALA
phasing
PHENIX
N
Crystal structure of E. coli RecE exonuclease
1
N
N
A
SER
615
A
SER
14
HELX_P
A
THR
625
A
THR
24
1
1
11
A
THR
625
A
THR
24
HELX_P
A
LYS
633
A
LYS
32
1
2
9
A
ASP
646
A
ASP
45
HELX_P
A
LEU
656
A
LEU
55
1
3
11
A
GLU
657
A
GLU
56
HELX_P
A
SER
662
A
SER
61
1
4
6
A
ARG
703
A
ARG
102
HELX_P
A
MET
713
A
MET
112
1
5
11
A
LEU
715
A
LEU
114
HELX_P
A
GLU
723
A
GLU
122
1
6
9
A
PRO
752
A
PRO
151
HELX_P
A
PHE
754
A
PHE
153
5
7
3
A
ASP
765
A
ASP
164
HELX_P
A
TYR
773
A
TYR
172
1
8
9
A
TYR
774
A
TYR
173
HELX_P
A
TYR
776
A
TYR
175
5
9
3
A
HIS
779
A
HIS
178
HELX_P
A
GLY
794
A
GLY
193
1
10
16
A
GLY
821
A
GLY
220
HELX_P
A
THR
845
A
THR
244
1
11
25
HYDROLASE
Exonuclease, Recombination, Hydrolase, Nuclease
RECE_ECOLI
UNP
1
606
P15032
ENYHAGPGISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLEPEEFSNRFIVAPEFNRRTNAGKEEEKAF
LMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKIIPEFHWIMDVKTTAD
IQRFKTAYYDYRYHVQDAFYSDGYEAQFGVQPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHRNLRTLSDCLNT
DEWPAIKTLSLPRWAKEYAND
606
866
3H4R
606
866
P15032
A
1
5
265
1
expression tag
GLY
-3
3H4R
A
P15032
UNP
1
1
expression tag
SER
-2
3H4R
A
P15032
UNP
2
1
expression tag
HIS
-1
3H4R
A
P15032
UNP
3
1
expression tag
MET
0
3H4R
A
P15032
UNP
4
1
PRO
engineered mutation
LEU
658
3H4R
A
P15032
UNP
658
57
2
4
anti-parallel
anti-parallel
parallel
anti-parallel
A
ILE
732
A
ILE
131
A
GLU
735
A
GLU
134
A
LEU
742
A
LEU
141
A
CYS
745
A
CYS
144
A
LYS
749
A
LYS
148
A
ILE
751
A
ILE
150
A
TRP
756
A
TRP
155
A
THR
763
A
THR
162
A
THR
798
A
THR
197
A
SER
805
A
SER
204
A
VAL
815
A
VAL
214
A
MET
819
A
MET
218
90
P 4 21 2