0.021345 0.012323 0.000000 0.000000 0.024647 0.000000 0.000000 0.000000 0.010533 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.000 90.000 120.000 46.850 46.850 94.940 C18 H38 O10 414.488 NONAETHYLENE GLYCOL non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of uncharacterized conserved protein with double-stranded beta-helix domain (YP_001338853.1) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578 at 1.80 A resolution 10.2210/pdb3h8u/pdb pdb_00003h8u 100 1 Adjustable focusing mirrors in K-B geometry CCD 2008-10-12 MARMOSAIC 300 mm CCD Si(111) Double Crystal Monochrometer MAD M x-ray 1 0.94645 1.0 0.97965 1.0 23-ID-B APS 0.94645,0.97965 SYNCHROTRON APS BEAMLINE 23-ID-B 13458.488 uncharacterized conserved protein with double-stranded beta-helix domain 2 man polymer 96.063 SULFATE ION 2 syn non-polymer 92.094 GLYCEROL 1 syn non-polymer 414.488 NONAETHYLENE GLYCOL 1 syn non-polymer 18.015 water 207 nat water no yes G(MSE)GVN(MSE)RAETESRIFSVDEYVRPSNGEPIRSVVLETNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAE YHQGNGIVTHLKAGDIAIAKPGQVHGA(MSE)NSGPEPFIFVSVVAPGNAGFALAEK GMGVNMRAETESRIFSVDEYVRPSNGEPIRSVVLETNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIV THLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAPGNAGFALAEK A,B 391713 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample KPN78578_51600, KPN_pKPN5p08243, YP_001338853.1 272620 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 562 Escherichia Coli HK100 Plasmid SpeedET 1 2.23 44.96 VAPOR DIFFUSION, SITTING DROP 7.5 1.7000M (NH4)2SO4, 15.0000% Glycerol, 1.7000% PEG-400, 0.1M HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative pdbx_struct_assembly_auth_evidence software software struct_conn database_2 struct_ref_seq_dif struct_site repository Initial release Advisory Version format compliance Author supporting evidence Refinement description Data collection Derived calculations Refinement description Database references Derived calculations 1 0 2009-05-12 1 1 2011-07-13 1 2 2017-10-25 1 3 2019-07-24 1 4 2023-02-01 _software.classification _software.name _software.classification _software.contact_author _software.contact_author_email _software.language _software.location _software.name _software.type _software.version _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2009-04-29 REL REL SO4 SULFATE ION GOL GLYCEROL 2PE NONAETHYLENE GLYCOL HOH water THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. SO4 208 2 SO4 SO4 208 A SO4 209 2 SO4 SO4 209 B GOL 210 3 GOL GOL 210 B 2PE 211 4 2PE 2PE 211 B HOH 125 5 HOH HOH 125 A HOH 126 5 HOH HOH 126 A HOH 2 5 HOH HOH 127 A HOH 128 5 HOH HOH 128 A HOH 3 5 HOH HOH 129 A HOH 130 5 HOH HOH 130 A HOH 5 5 HOH HOH 131 A HOH 132 5 HOH HOH 132 A HOH 133 5 HOH HOH 133 A HOH 7 5 HOH HOH 134 A HOH 135 5 HOH HOH 135 A HOH 8 5 HOH HOH 136 A HOH 11 5 HOH HOH 137 A HOH 138 5 HOH HOH 138 A HOH 13 5 HOH HOH 139 A HOH 140 5 HOH HOH 140 A HOH 15 5 HOH HOH 141 A HOH 16 5 HOH HOH 142 A HOH 17 5 HOH HOH 143 A HOH 18 5 HOH HOH 144 A HOH 145 5 HOH HOH 145 A HOH 146 5 HOH HOH 146 A HOH 20 5 HOH HOH 147 A HOH 148 5 HOH HOH 148 A HOH 149 5 HOH HOH 149 A HOH 21 5 HOH HOH 150 A HOH 151 5 HOH HOH 151 A HOH 152 5 HOH HOH 152 A HOH 22 5 HOH HOH 153 A HOH 24 5 HOH HOH 154 A HOH 26 5 HOH HOH 155 A HOH 156 5 HOH HOH 156 A HOH 28 5 HOH HOH 157 A HOH 158 5 HOH HOH 158 A HOH 159 5 HOH HOH 159 A HOH 160 5 HOH HOH 160 A HOH 161 5 HOH HOH 161 A HOH 29 5 HOH HOH 162 A HOH 31 5 HOH HOH 163 A HOH 164 5 HOH HOH 164 A HOH 32 5 HOH HOH 165 A HOH 33 5 HOH HOH 166 A HOH 167 5 HOH HOH 167 A HOH 34 5 HOH HOH 168 A HOH 169 5 HOH HOH 169 A HOH 35 5 HOH HOH 170 A HOH 171 5 HOH HOH 171 A HOH 172 5 HOH HOH 172 A HOH 36 5 HOH HOH 173 A HOH 38 5 HOH HOH 174 A HOH 41 5 HOH HOH 175 A HOH 176 5 HOH HOH 176 A HOH 177 5 HOH HOH 177 A HOH 42 5 HOH HOH 178 A HOH 43 5 HOH HOH 179 A HOH 44 5 HOH HOH 180 A HOH 181 5 HOH HOH 181 A HOH 45 5 HOH HOH 182 A HOH 183 5 HOH HOH 183 A HOH 47 5 HOH HOH 184 A HOH 185 5 HOH HOH 185 A HOH 186 5 HOH HOH 186 A HOH 49 5 HOH HOH 187 A HOH 188 5 HOH HOH 188 A HOH 189 5 HOH HOH 189 A HOH 51 5 HOH HOH 190 A HOH 191 5 HOH HOH 191 A HOH 192 5 HOH HOH 192 A HOH 52 5 HOH HOH 193 A HOH 54 5 HOH HOH 194 A HOH 58 5 HOH HOH 195 A HOH 62 5 HOH HOH 196 A HOH 197 5 HOH HOH 197 A HOH 198 5 HOH HOH 198 A HOH 64 5 HOH HOH 199 A HOH 200 5 HOH HOH 200 A HOH 201 5 HOH HOH 201 A HOH 66 5 HOH HOH 202 A HOH 70 5 HOH HOH 203 A HOH 72 5 HOH HOH 204 A HOH 205 5 HOH HOH 205 A HOH 73 5 HOH HOH 206 A HOH 207 5 HOH HOH 207 A HOH 75 5 HOH HOH 209 A HOH 76 5 HOH HOH 210 A HOH 77 5 HOH HOH 211 A HOH 79 5 HOH HOH 212 A HOH 80 5 HOH HOH 213 A HOH 85 5 HOH HOH 214 A HOH 90 5 HOH HOH 215 A HOH 93 5 HOH HOH 216 A HOH 95 5 HOH HOH 217 A HOH 100 5 HOH HOH 218 A HOH 101 5 HOH HOH 219 A HOH 102 5 HOH HOH 220 A HOH 104 5 HOH HOH 221 A HOH 107 5 HOH HOH 222 A HOH 108 5 HOH HOH 223 A HOH 110 5 HOH HOH 224 A HOH 112 5 HOH HOH 225 A HOH 114 5 HOH HOH 226 A HOH 116 5 HOH HOH 227 A HOH 120 5 HOH HOH 228 A HOH 121 5 HOH HOH 229 A HOH 122 5 HOH HOH 230 A HOH 147 5 HOH HOH 231 A HOH 175 5 HOH HOH 232 A HOH 1 5 HOH HOH 125 B HOH 4 5 HOH HOH 126 B HOH 127 5 HOH HOH 127 B HOH 6 5 HOH HOH 128 B HOH 129 5 HOH HOH 129 B HOH 9 5 HOH HOH 130 B HOH 131 5 HOH HOH 131 B HOH 10 5 HOH HOH 132 B HOH 12 5 HOH HOH 133 B HOH 134 5 HOH HOH 134 B HOH 14 5 HOH HOH 135 B HOH 136 5 HOH HOH 136 B HOH 137 5 HOH HOH 137 B HOH 19 5 HOH HOH 138 B HOH 139 5 HOH HOH 139 B HOH 23 5 HOH HOH 140 B HOH 141 5 HOH HOH 141 B HOH 142 5 HOH HOH 142 B HOH 143 5 HOH HOH 143 B HOH 144 5 HOH HOH 144 B HOH 25 5 HOH HOH 145 B HOH 27 5 HOH HOH 146 B HOH 30 5 HOH HOH 148 B HOH 37 5 HOH HOH 149 B HOH 150 5 HOH HOH 150 B HOH 39 5 HOH HOH 151 B HOH 40 5 HOH HOH 152 B HOH 153 5 HOH HOH 153 B HOH 154 5 HOH HOH 154 B HOH 155 5 HOH HOH 155 B HOH 46 5 HOH HOH 156 B HOH 157 5 HOH HOH 157 B HOH 48 5 HOH HOH 158 B HOH 50 5 HOH HOH 159 B HOH 53 5 HOH HOH 160 B HOH 55 5 HOH HOH 161 B HOH 162 5 HOH HOH 162 B HOH 163 5 HOH HOH 163 B HOH 56 5 HOH HOH 164 B HOH 165 5 HOH HOH 165 B HOH 166 5 HOH HOH 166 B HOH 57 5 HOH HOH 167 B HOH 168 5 HOH HOH 168 B HOH 59 5 HOH HOH 169 B HOH 170 5 HOH HOH 170 B HOH 60 5 HOH HOH 171 B HOH 61 5 HOH HOH 172 B HOH 173 5 HOH HOH 173 B HOH 174 5 HOH HOH 174 B HOH 63 5 HOH HOH 176 B HOH 65 5 HOH HOH 177 B HOH 178 5 HOH HOH 178 B HOH 179 5 HOH HOH 179 B HOH 180 5 HOH HOH 180 B HOH 67 5 HOH HOH 181 B HOH 182 5 HOH HOH 182 B HOH 68 5 HOH HOH 183 B HOH 184 5 HOH HOH 184 B HOH 69 5 HOH HOH 185 B HOH 71 5 HOH HOH 186 B HOH 187 5 HOH HOH 187 B HOH 74 5 HOH HOH 188 B HOH 78 5 HOH HOH 189 B HOH 190 5 HOH HOH 190 B HOH 81 5 HOH HOH 191 B HOH 82 5 HOH HOH 192 B HOH 193 5 HOH HOH 193 B HOH 194 5 HOH HOH 194 B HOH 195 5 HOH HOH 195 B HOH 196 5 HOH HOH 196 B HOH 83 5 HOH HOH 197 B HOH 84 5 HOH HOH 198 B HOH 199 5 HOH HOH 199 B HOH 86 5 HOH HOH 200 B HOH 87 5 HOH HOH 201 B HOH 202 5 HOH HOH 202 B HOH 203 5 HOH HOH 203 B HOH 204 5 HOH HOH 204 B HOH 88 5 HOH HOH 205 B HOH 206 5 HOH HOH 206 B HOH 89 5 HOH HOH 207 B HOH 91 5 HOH HOH 208 B HOH 92 5 HOH HOH 212 B HOH 94 5 HOH HOH 213 B HOH 96 5 HOH HOH 214 B HOH 97 5 HOH HOH 215 B HOH 98 5 HOH HOH 216 B HOH 99 5 HOH HOH 217 B HOH 103 5 HOH HOH 218 B HOH 105 5 HOH HOH 219 B HOH 106 5 HOH HOH 220 B HOH 109 5 HOH HOH 221 B HOH 111 5 HOH HOH 222 B HOH 113 5 HOH HOH 223 B HOH 115 5 HOH HOH 224 B HOH 117 5 HOH HOH 225 B HOH 118 5 HOH HOH 226 B HOH 119 5 HOH HOH 227 B HOH 123 5 HOH HOH 228 B HOH 124 5 HOH HOH 229 B n 1 0 A n 2 1 A n 3 2 A VAL 3 n 4 VAL 3 A ASN 4 n 5 ASN 4 A MSE 5 n 6 MSE 5 A ARG 6 n 7 ARG 6 A ALA 7 n 8 ALA 7 A GLU 8 n 9 GLU 8 A THR 9 n 10 THR 9 A GLU 10 n 11 GLU 10 A SER 11 n 12 SER 11 A ARG 12 n 13 ARG 12 A ILE 13 n 14 ILE 13 A PHE 14 n 15 PHE 14 A SER 15 n 16 SER 15 A VAL 16 n 17 VAL 16 A ASP 17 n 18 ASP 17 A GLU 18 n 19 GLU 18 A TYR 19 n 20 TYR 19 A VAL 20 n 21 VAL 20 A ARG 21 n 22 ARG 21 A PRO 22 n 23 PRO 22 A SER 23 n 24 SER 23 A ASN 24 n 25 ASN 24 A GLY 25 n 26 GLY 25 A GLU 26 n 27 GLU 26 A PRO 27 n 28 PRO 27 A ILE 28 n 29 ILE 28 A ARG 29 n 30 ARG 29 A SER 30 n 31 SER 30 A VAL 31 n 32 VAL 31 A VAL 32 n 33 VAL 32 A LEU 33 n 34 LEU 33 A GLU 34 n 35 GLU 34 A THR 35 n 36 THR 35 A ASN 36 n 37 ASN 36 A ASP 37 n 38 ASP 37 A SER 38 n 39 SER 38 A VAL 39 n 40 VAL 39 A VAL 40 n 41 VAL 40 A VAL 41 n 42 VAL 41 A VAL 42 n 43 VAL 42 A TRP 43 n 44 TRP 43 A HIS 44 n 45 HIS 44 A ALA 45 n 46 ALA 45 A HIS 46 n 47 HIS 46 A PRO 47 n 48 PRO 47 A GLY 48 n 49 GLY 48 A GLN 49 n 50 GLN 49 A GLU 50 n 51 GLU 50 A ILE 51 n 52 ILE 51 A ALA 52 n 53 ALA 52 A SER 53 n 54 SER 53 A HIS 54 n 55 HIS 54 A VAL 55 n 56 VAL 55 A HIS 56 n 57 HIS 56 A PRO 57 n 58 PRO 57 A HIS 58 n 59 HIS 58 A GLY 59 n 60 GLY 59 A GLN 60 n 61 GLN 60 A ASP 61 n 62 ASP 61 A THR 62 n 63 THR 62 A TRP 63 n 64 TRP 63 A THR 64 n 65 THR 64 A VAL 65 n 66 VAL 65 A ILE 66 n 67 ILE 66 A SER 67 n 68 SER 67 A GLY 68 n 69 GLY 68 A GLU 69 n 70 GLU 69 A ALA 70 n 71 ALA 70 A GLU 71 n 72 GLU 71 A TYR 72 n 73 TYR 72 A HIS 73 n 74 HIS 73 A GLN 74 n 75 GLN 74 A GLY 75 n 76 GLY 75 A ASN 76 n 77 ASN 76 A GLY 77 n 78 GLY 77 A ILE 78 n 79 ILE 78 A VAL 79 n 80 VAL 79 A THR 80 n 81 THR 80 A HIS 81 n 82 HIS 81 A LEU 82 n 83 LEU 82 A LYS 83 n 84 LYS 83 A ALA 84 n 85 ALA 84 A GLY 85 n 86 GLY 85 A ASP 86 n 87 ASP 86 A ILE 87 n 88 ILE 87 A ALA 88 n 89 ALA 88 A ILE 89 n 90 ILE 89 A ALA 90 n 91 ALA 90 A LYS 91 n 92 LYS 91 A PRO 92 n 93 PRO 92 A GLY 93 n 94 GLY 93 A GLN 94 n 95 GLN 94 A VAL 95 n 96 VAL 95 A HIS 96 n 97 HIS 96 A GLY 97 n 98 GLY 97 A ALA 98 n 99 ALA 98 A MSE 99 n 100 MSE 99 A ASN 100 n 101 ASN 100 A SER 101 n 102 SER 101 A GLY 102 n 103 GLY 102 A PRO 103 n 104 PRO 103 A GLU 104 n 105 GLU 104 A PRO 105 n 106 PRO 105 A PHE 106 n 107 PHE 106 A ILE 107 n 108 ILE 107 A PHE 108 n 109 PHE 108 A VAL 109 n 110 VAL 109 A SER 110 n 111 SER 110 A VAL 111 n 112 VAL 111 A VAL 112 n 113 VAL 112 A ALA 113 n 114 ALA 113 A PRO 114 n 115 PRO 114 A GLY 115 n 116 GLY 115 A ASN 116 n 117 ASN 116 A ALA 117 n 118 ALA 117 A GLY 118 n 119 GLY 118 A PHE 119 n 120 PHE 119 A ALA 120 n 121 ALA 120 A LEU 121 n 122 LEU 121 A ALA 122 n 123 ALA 122 A GLU 123 n 124 GLU 123 A LYS 124 n 125 LYS 124 A n 1 0 B n 2 1 B n 3 2 B n 4 3 B n 5 4 B n 6 5 B n 7 6 B n 8 7 B n 9 8 B n 10 9 B GLU 10 n 11 GLU 10 B SER 11 n 12 SER 11 B ARG 12 n 13 ARG 12 B ILE 13 n 14 ILE 13 B PHE 14 n 15 PHE 14 B SER 15 n 16 SER 15 B VAL 16 n 17 VAL 16 B ASP 17 n 18 ASP 17 B GLU 18 n 19 GLU 18 B TYR 19 n 20 TYR 19 B VAL 20 n 21 VAL 20 B ARG 21 n 22 ARG 21 B PRO 22 n 23 PRO 22 B SER 23 n 24 SER 23 B ASN 24 n 25 ASN 24 B GLY 25 n 26 GLY 25 B GLU 26 n 27 GLU 26 B PRO 27 n 28 PRO 27 B ILE 28 n 29 ILE 28 B ARG 29 n 30 ARG 29 B SER 30 n 31 SER 30 B VAL 31 n 32 VAL 31 B VAL 32 n 33 VAL 32 B LEU 33 n 34 LEU 33 B GLU 34 n 35 GLU 34 B THR 35 n 36 THR 35 B ASN 36 n 37 ASN 36 B ASP 37 n 38 ASP 37 B SER 38 n 39 SER 38 B VAL 39 n 40 VAL 39 B VAL 40 n 41 VAL 40 B VAL 41 n 42 VAL 41 B VAL 42 n 43 VAL 42 B TRP 43 n 44 TRP 43 B HIS 44 n 45 HIS 44 B ALA 45 n 46 ALA 45 B HIS 46 n 47 HIS 46 B PRO 47 n 48 PRO 47 B GLY 48 n 49 GLY 48 B GLN 49 n 50 GLN 49 B GLU 50 n 51 GLU 50 B ILE 51 n 52 ILE 51 B ALA 52 n 53 ALA 52 B SER 53 n 54 SER 53 B HIS 54 n 55 HIS 54 B VAL 55 n 56 VAL 55 B HIS 56 n 57 HIS 56 B PRO 57 n 58 PRO 57 B HIS 58 n 59 HIS 58 B GLY 59 n 60 GLY 59 B GLN 60 n 61 GLN 60 B ASP 61 n 62 ASP 61 B THR 62 n 63 THR 62 B TRP 63 n 64 TRP 63 B THR 64 n 65 THR 64 B VAL 65 n 66 VAL 65 B ILE 66 n 67 ILE 66 B SER 67 n 68 SER 67 B GLY 68 n 69 GLY 68 B GLU 69 n 70 GLU 69 B ALA 70 n 71 ALA 70 B GLU 71 n 72 GLU 71 B TYR 72 n 73 TYR 72 B HIS 73 n 74 HIS 73 B GLN 74 n 75 GLN 74 B GLY 75 n 76 GLY 75 B ASN 76 n 77 ASN 76 B GLY 77 n 78 GLY 77 B ILE 78 n 79 ILE 78 B VAL 79 n 80 VAL 79 B THR 80 n 81 THR 80 B HIS 81 n 82 HIS 81 B LEU 82 n 83 LEU 82 B LYS 83 n 84 LYS 83 B ALA 84 n 85 ALA 84 B GLY 85 n 86 GLY 85 B ASP 86 n 87 ASP 86 B ILE 87 n 88 ILE 87 B ALA 88 n 89 ALA 88 B ILE 89 n 90 ILE 89 B ALA 90 n 91 ALA 90 B LYS 91 n 92 LYS 91 B PRO 92 n 93 PRO 92 B GLY 93 n 94 GLY 93 B GLN 94 n 95 GLN 94 B VAL 95 n 96 VAL 95 B HIS 96 n 97 HIS 96 B GLY 97 n 98 GLY 97 B ALA 98 n 99 ALA 98 B MSE 99 n 100 MSE 99 B ASN 100 n 101 ASN 100 B SER 101 n 102 SER 101 B GLY 102 n 103 GLY 102 B PRO 103 n 104 PRO 103 B GLU 104 n 105 GLU 104 B PRO 105 n 106 PRO 105 B PHE 106 n 107 PHE 106 B ILE 107 n 108 ILE 107 B PHE 108 n 109 PHE 108 B VAL 109 n 110 VAL 109 B SER 110 n 111 SER 110 B VAL 111 n 112 VAL 111 B VAL 112 n 113 VAL 112 B ALA 113 n 114 ALA 113 B PRO 114 n 115 PRO 114 B GLY 115 n 116 GLY 115 B ASN 116 n 117 ASN 116 B ALA 117 n 118 ALA 117 B GLY 118 n 119 GLY 118 B PHE 119 n 120 PHE 119 B ALA 120 n 121 ALA 120 B LEU 121 n 122 LEU 121 B ALA 122 n 123 ALA 122 B GLU 123 n 124 GLU 123 B LYS 124 n 125 LYS 124 B 12.7646 -4.3906 0.6205 5.0578 0.5662 2.3682 -0.2143 -0.6326 -0.2985 0.1464 0.0569 0.3094 0.2845 -0.0994 0.1574 -0.1357 -0.0349 -0.0230 -0.1180 0.0465 -0.2014 refined 16.1990 17.5420 27.3090 X-RAY DIFFRACTION 2.2028 -0.2034 -0.3500 0.6139 0.3307 1.9851 -0.0076 -0.0044 -0.0979 -0.0718 -0.0060 -0.0893 0.0025 0.1313 0.0136 -0.2008 -0.0019 0.0006 -0.1857 0.0133 -0.2087 refined 22.6150 19.4710 10.9320 X-RAY DIFFRACTION 12.9662 -6.1159 -5.8857 5.3208 3.1716 5.4456 0.5607 0.0141 0.6840 -0.6237 -0.1407 0.0772 -1.1470 -0.4798 -0.4200 0.0800 0.0702 0.0206 0.0029 0.0149 -0.0761 refined 11.0510 36.3550 9.7540 X-RAY DIFFRACTION 1.2823 -0.4971 -0.7181 1.3451 0.6055 2.2988 0.0635 -0.0739 0.0980 -0.0101 -0.0796 0.0488 -0.1927 -0.0894 0.0162 -0.1939 -0.0176 -0.0008 -0.1472 -0.0053 -0.1988 refined 4.8280 28.6550 19.2960 X-RAY DIFFRACTION A 3 A 30 X-RAY DIFFRACTION 1 A 31 A 124 X-RAY DIFFRACTION 2 B 11 B 29 X-RAY DIFFRACTION 3 B 30 B 124 X-RAY DIFFRACTION 4 author_and_software_defined_assembly PISA 2 dimeric gel filtration 3820 -41 10870 A MSE 5 SELENOMETHIONINE A MSE 6 MET A MSE 99 SELENOMETHIONINE A MSE 100 MET B MSE 99 SELENOMETHIONINE B MSE 100 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N PHE 14 A N PHE 15 B O ILE 87 B O ILE 88 B O ALA 88 B O ALA 89 B N TRP 63 B N TRP 64 B N GLN 60 B N GLN 61 B O ALA 113 B O ALA 114 B O SER 110 B O SER 111 B N VAL 41 B N VAL 42 B O VAL 40 B O VAL 41 B N LEU 33 B N LEU 34 A N VAL 32 A N VAL 33 A O VAL 40 A O VAL 41 A N VAL 41 A N VAL 42 A O SER 110 A O SER 111 A O ALA 113 A O ALA 114 A N GLN 60 A N GLN 61 A N TRP 63 A N TRP 64 A O ALA 88 A O ALA 89 A N ILE 87 A N ILE 88 B O PHE 14 B O PHE 15 A O THR 80 A O THR 81 A N TYR 72 A N TYR 73 A N GLU 71 A N GLU 72 A O MSE 99 A O MSE 100 A O ALA 98 A O ALA 99 A N ILE 51 A N ILE 52 A N VAL 55 A N VAL 56 A O ALA 120 A O ALA 121 B O THR 80 B O THR 81 B N TYR 72 B N TYR 73 B N GLU 71 B N GLU 72 B O MSE 99 B O MSE 100 B O ALA 98 B O ALA 99 B N ILE 51 B N ILE 52 B N VAL 55 B N VAL 56 B O ALA 120 B O ALA 121 1 A CB VAL 3 A CB VAL 4 1 Y 1 A CG1 VAL 3 A CG1 VAL 4 1 Y 1 A CG2 VAL 3 A CG2 VAL 4 1 Y 1 A CE LYS 83 A CE LYS 84 1 Y 1 A NZ LYS 83 A NZ LYS 84 1 Y 1 B CD GLU 10 B CD GLU 11 1 Y 1 B OE1 GLU 10 B OE1 GLU 11 1 Y 1 B OE2 GLU 10 B OE2 GLU 11 1 Y 1 B CG ASN 24 B CG ASN 25 1 Y 1 B OD1 ASN 24 B OD1 ASN 25 1 Y 1 B ND2 ASN 24 B ND2 ASN 25 1 Y 1 B CG GLU 26 B CG GLU 27 1 Y 1 B CD GLU 26 B CD GLU 27 1 Y 1 B OE1 GLU 26 B OE1 GLU 27 1 Y 1 B OE2 GLU 26 B OE2 GLU 27 1 Y 1 B C12 2PE 211 F C12 2PE 1 1 N 1 B O13 2PE 211 F O13 2PE 1 1 N 1 B C14 2PE 211 F C14 2PE 1 1 N 1 B C15 2PE 211 F C15 2PE 1 1 N 1 B O16 2PE 211 F O16 2PE 1 1 N 1 B C17 2PE 211 F C17 2PE 1 1 N 1 B C18 2PE 211 F C18 2PE 1 1 N 1 B O19 2PE 211 F O19 2PE 1 1 N 1 B C20 2PE 211 F C20 2PE 1 1 N 1 B C21 2PE 211 F C21 2PE 1 1 N 1 B O22 2PE 211 F O22 2PE 1 1 N 1 B C23 2PE 211 F C23 2PE 1 1 N 1 B C24 2PE 211 F C24 2PE 1 1 N 1 B O25 2PE 211 F O25 2PE 1 1 N 1 B C26 2PE 211 F C26 2PE 1 1 N 1 B C27 2PE 211 F C27 2PE 1 1 N 1 B O28 2PE 211 F O28 2PE 1 1 N 1 A GLY 0 A GLY 1 1 Y 1 A MSE 1 A MSE 2 1 Y 1 A GLY 2 A GLY 3 1 Y 1 B GLY 0 B GLY 1 1 Y 1 B MSE 1 B MSE 2 1 Y 1 B GLY 2 B GLY 3 1 Y 1 B VAL 3 B VAL 4 1 Y 1 B ASN 4 B ASN 5 1 Y 1 B MSE 5 B MSE 6 1 Y 1 B ARG 6 B ARG 7 1 Y 1 B ALA 7 B ALA 8 1 Y 1 B GLU 8 B GLU 9 1 Y 1 B THR 9 B THR 10 1 Y 1 A A OG OD1 SER ASP 15 17 1.91 B 1 B ASN 116 -117.03 67.71 1 B ASN 116 -117.03 53.97 71.98 31.881 13.46 0.410 0.210 0.000 0.410 0.000 -0.620 0.970 0.947 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. A SULPHATE CATION, GLYCEROL AND PEG FRAGMNET (2PE) MOLECULES FROM THE CRYSTALLIZATION CONDITIONS HAVE BEEN MODELED IN THE STRUCTURE. 0.196 0.152 0.154 1.800 24.953 1044 21489 4.900 99.740 1.00 0.50 4.999 0.081 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 MAD 0.115 0.115 0.800 0.800 1.200 MAXIMUM LIKELIHOOD WITH PHASES MASK 1.800 24.953 207 2010 27 0 1776 0.015 0.021 1925 0.002 0.020 1685 1.509 1.924 2645 0.774 3.000 3934 6.733 5.000 258 31.571 24.535 86 11.939 15.000 271 8.859 15.000 7 0.093 0.200 288 0.008 0.020 2223 0.004 0.020 372 0.199 0.200 308 0.181 0.200 1706 0.177 0.200 871 0.082 0.200 1201 0.179 0.200 171 0.127 0.200 8 0.234 0.200 75 0.138 0.200 15 0.756 1.500 1238 0.214 1.500 501 1.214 2.000 1986 1.995 3.000 753 3.213 4.500 650 0.310 0.217 1.848 56 1480 1536 20 98.340 19.864 1.80 24.953 3H8U 21525 -3.00 0.065 1 7.100 2.86 96.600 0.491 1.80 1.86 1.440 5531 3759 1 92.70 0.360 1.86 1.94 2.0 6567 4438 1 95.80 0.234 1.94 2.03 2.9 6285 4251 1 96.40 0.180 2.03 2.13 3.7 5722 3870 1 96.30 0.133 2.13 2.27 4.9 6464 4374 1 96.60 0.104 2.27 2.44 5.8 6019 4088 1 96.90 0.082 2.44 2.69 7.3 6326 4295 1 97.70 0.055 2.69 3.07 10.3 6118 4146 1 98.00 0.040 3.07 3.87 14.5 6273 4258 1 97.70 0.033 3.87 24.953 17.3 6326 4311 1 98.10 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.2.0005 refinement P.D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package phasing George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.006 data reduction XDS phasing SHELXD phasing autoSHARP Crystal structure of uncharacterized conserved protein with double-stranded beta-helix domain (YP_001338853.1) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578 at 1.80 A resolution 1 N N 1 N N 2 N N 2 N N 3 N N 4 N N 5 N N 5 N N SIZE EXCLUSION CHROMATOGRAPHY DATA SUPPORTS ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. A VAL 16 A VAL 17 HELX_P A VAL 20 A VAL 21 1 1 5 B VAL 16 B VAL 17 HELX_P B VAL 20 B VAL 21 1 2 5 covale 1.331 both A ASN 4 A C ASN 5 1_555 A MSE 5 A N MSE 6 1_555 covale 1.332 both A MSE 5 A C MSE 6 1_555 A ARG 6 A N ARG 7 1_555 covale 1.338 both A ALA 98 A C ALA 99 1_555 A MSE 99 A N MSE 100 1_555 covale 1.342 both A MSE 99 A C MSE 100 1_555 A ASN 100 A N ASN 101 1_555 covale 1.329 both B ALA 98 B C ALA 99 1_555 B MSE 99 B N MSE 100 1_555 covale 1.337 both B MSE 99 B C MSE 100 1_555 B ASN 100 B N ASN 101 1_555 structural genomics, unknown function YP_001338853.1, uncharacterized conserved protein with double-stranded beta-helix domain, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, Cupin domain, unknown function A GLY 102 A GLY 103 1 A PRO 103 A PRO 104 1.92 A ALA 113 A ALA 114 1 A PRO 114 A PRO 115 -1.78 B ALA 113 B ALA 114 1 B PRO 114 B PRO 115 1.06 A6TJ50_KLEP7 UNP 1 1 A6TJ50 MGVNMRAETESRIFSVDEYVRPSNGEPIRSVVLETNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVT HLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAPGNAGFALAEK 1 124 3H8U 1 124 A6TJ50 A 1 2 125 1 124 3H8U 1 124 A6TJ50 B 1 2 125 1 expression tag GLY 0 3H8U A A6TJ50 UNP 1 2 expression tag GLY 0 3H8U B A6TJ50 UNP 1 6 6 5 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 13 A ILE 14 A SER 15 A SER 16 B ASP 86 B ASP 87 B ALA 90 B ALA 91 B GLN 60 B GLN 61 B SER 67 B SER 68 B PHE 106 B PHE 107 B ALA 113 B ALA 114 B VAL 39 B VAL 40 B ALA 45 B ALA 46 B SER 30 B SER 31 B GLU 34 B GLU 35 A SER 30 A SER 31 A GLU 34 A GLU 35 A VAL 39 A VAL 40 A ALA 45 A ALA 46 A PHE 106 A PHE 107 A ALA 113 A ALA 114 A GLN 60 A GLN 61 A SER 67 A SER 68 A ASP 86 A ASP 87 A ALA 90 A ALA 91 B ILE 13 B ILE 14 B SER 15 B SER 16 A VAL 79 A VAL 80 A LYS 83 A LYS 84 A GLU 69 A GLU 70 A HIS 73 A HIS 74 A HIS 96 A HIS 97 A ASN 100 A ASN 101 A GLU 50 A GLU 51 A VAL 55 A VAL 56 A ALA 120 A ALA 121 A LEU 121 A LEU 122 B VAL 79 B VAL 80 B LYS 83 B LYS 84 B GLU 69 B GLU 70 B HIS 73 B HIS 74 B HIS 96 B HIS 97 B MSE 99 B MSE 100 B GLU 50 B GLU 51 B VAL 55 B VAL 56 B ALA 120 B ALA 121 B LEU 121 B LEU 122 BINDING SITE FOR RESIDUE SO4 A 208 A SO4 208 Software 4 BINDING SITE FOR RESIDUE SO4 B 209 B SO4 209 Software 6 BINDING SITE FOR RESIDUE GOL B 210 B GOL 210 Software 6 BINDING SITE FOR RESIDUE 2PE B 211 B 2PE 211 Software 6 A HIS 58 A HIS 59 4 1_555 A ALA 117 A ALA 118 4 1_555 A GLY 118 A GLY 119 4 1_555 A HOH 136 G HOH 4 1_555 A ASN 4 A ASN 5 6 1_555 B THR 80 B THR 81 6 1_555 B HIS 81 B HIS 82 6 1_555 B HOH 165 H HOH 6 1_555 B HOH 179 H HOH 6 1_555 B HOH 202 H HOH 6 1_555 A SER 23 A SER 24 6 2_654 A ASN 24 A ASN 25 6 2_654 A GLY 25 A GLY 26 6 2_654 A HOH 172 G HOH 6 2_654 B GLU 10 B GLU 11 6 1_555 B HOH 129 H HOH 6 1_555 A ARG 29 A ARG 30 6 1_565 A TRP 43 A TRP 44 6 1_565 A ILE 51 A ILE 52 6 1_565 A ALA 52 A ALA 53 6 1_565 A PHE 119 A PHE 120 6 1_565 B ASN 24 B ASN 25 6 1_555 145 P 32