0.028933 0.000000 0.000000 0.000000 0.018290 0.000000 0.000000 0.000000 0.014251 0.000000 0.000000 0.000000 Amaya, M.F. Dong, A. Adams-Cioaba, M.A. Guo, Y. MacKenzie, F. Kozieradzki, I. Edwards, A.M. Arrowsmith, C.H. Bochkarev, A. Min, J. Structural Genomics Consortium (SGC) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 34.563 54.676 70.171 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Plos One 1932-6203 5 e13559 e13559 10.1371/journal.pone.0013559 21072162 Structural Studies of the Tandem Tudor Domains of Fragile X Mental Retardation Related Proteins FXR1 and FXR2. 2010 1 2009-03-18 SINGLE WAVELENGTH M x-ray 1 0.97942 1.0 19-ID APS 0.97942 SYNCHROTRON APS BEAMLINE 19-ID 14812.163 Fragile X mental retardation syndrome-related protein 2 UNP residues 13-136 1 man polymer 18.015 water 63 nat water no yes AYFQGLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCG WWLARVR(MSE)(MSE)KGDFYVIEYAACDATYNEIVTLERLRPVNPNPLATKGSF AYFQGLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCG WWLARVRMMKGDFYVIEYAACDATYNEIVTLERLRPVNPNPLATKGSF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample FXR2, FMR1L2 9606 Homo sapiens 562 Escherichia coli 1 2.24 45.04 VAPOR DIFFUSION, HANGING DROP 8.0 10 mg/ml protein in 20 mM Tris, pH 8.0, 200 mM NaCl, 1 mM DTT; Hanging drop vapour diffusion,20-30% Peg 3350, 0.2M MgCl2, Hepes 7.5., VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 Structural Genomics Consortium SGC software repository Initial release Version format compliance Refinement description 1 0 2009-06-16 1 1 2011-07-13 1 2 2017-11-01 Y RCSB Y RCSB 2009-04-29 REL REL HOH water HOH 1 2 HOH HOH 1 A HOH 2 2 HOH HOH 2 A HOH 3 2 HOH HOH 3 A HOH 4 2 HOH HOH 4 A HOH 5 2 HOH HOH 5 A HOH 6 2 HOH HOH 6 A HOH 7 2 HOH HOH 7 A HOH 8 2 HOH HOH 8 A HOH 9 2 HOH HOH 9 A HOH 10 2 HOH HOH 138 A HOH 11 2 HOH HOH 139 A HOH 12 2 HOH HOH 140 A HOH 13 2 HOH HOH 141 A HOH 14 2 HOH HOH 142 A HOH 15 2 HOH HOH 143 A HOH 16 2 HOH HOH 144 A HOH 17 2 HOH HOH 145 A HOH 18 2 HOH HOH 146 A HOH 19 2 HOH HOH 147 A HOH 20 2 HOH HOH 148 A HOH 22 2 HOH HOH 149 A HOH 23 2 HOH HOH 150 A HOH 24 2 HOH HOH 151 A HOH 26 2 HOH HOH 152 A HOH 27 2 HOH HOH 153 A HOH 28 2 HOH HOH 154 A HOH 29 2 HOH HOH 155 A HOH 30 2 HOH HOH 156 A HOH 31 2 HOH HOH 157 A HOH 33 2 HOH HOH 158 A HOH 34 2 HOH HOH 159 A HOH 35 2 HOH HOH 160 A HOH 36 2 HOH HOH 161 A HOH 37 2 HOH HOH 162 A HOH 38 2 HOH HOH 163 A HOH 39 2 HOH HOH 164 A HOH 40 2 HOH HOH 165 A HOH 41 2 HOH HOH 166 A HOH 42 2 HOH HOH 167 A HOH 43 2 HOH HOH 168 A HOH 44 2 HOH HOH 169 A HOH 45 2 HOH HOH 170 A HOH 46 2 HOH HOH 171 A HOH 47 2 HOH HOH 172 A HOH 48 2 HOH HOH 173 A HOH 49 2 HOH HOH 174 A HOH 50 2 HOH HOH 175 A HOH 51 2 HOH HOH 176 A HOH 52 2 HOH HOH 177 A HOH 53 2 HOH HOH 178 A HOH 54 2 HOH HOH 179 A HOH 55 2 HOH HOH 180 A HOH 56 2 HOH HOH 181 A HOH 57 2 HOH HOH 182 A HOH 58 2 HOH HOH 183 A HOH 61 2 HOH HOH 184 A HOH 62 2 HOH HOH 185 A HOH 63 2 HOH HOH 186 A HOH 64 2 HOH HOH 187 A HOH 65 2 HOH HOH 188 A HOH 66 2 HOH HOH 189 A HOH 67 2 HOH HOH 190 A HOH 72 2 HOH HOH 191 A ALA 10 n 1 ALA 10 A TYR 11 n 2 TYR 11 A PHE 12 n 3 PHE 12 A GLN 13 n 4 GLN 13 A GLY 14 n 5 GLY 14 A LEU 15 n 6 LEU 15 A PRO 16 n 7 PRO 16 A VAL 17 n 8 VAL 17 A GLU 18 n 9 GLU 18 A VAL 19 n 10 VAL 19 A ARG 20 n 11 ARG 20 A GLY 21 n 12 GLY 21 A SER 22 n 13 SER 22 A ASN 23 n 14 ASN 23 A GLY 24 n 15 GLY 24 A ALA 25 n 16 ALA 25 A PHE 26 n 17 PHE 26 A TYR 27 n 18 TYR 27 A LYS 28 n 19 LYS 28 A GLY 29 n 20 GLY 29 A PHE 30 n 21 PHE 30 A VAL 31 n 22 VAL 31 A LYS 32 n 23 LYS 32 A ASP 33 n 24 ASP 33 A VAL 34 n 25 VAL 34 A HIS 35 n 26 HIS 35 A GLU 36 n 27 GLU 36 A ASP 37 n 28 ASP 37 A SER 38 n 29 SER 38 A VAL 39 n 30 VAL 39 A THR 40 n 31 THR 40 A ILE 41 n 32 ILE 41 A PHE 42 n 33 PHE 42 A PHE 43 n 34 PHE 43 A GLU 44 n 35 GLU 44 A ASN 45 n 36 ASN 45 A ASN 46 n 37 ASN 46 A TRP 47 n 38 TRP 47 A GLN 48 n 39 GLN 48 A SER 49 n 40 SER 49 A GLU 50 n 41 GLU 50 A ARG 51 n 42 ARG 51 A GLN 52 n 43 GLN 52 A ILE 53 n 44 ILE 53 A PRO 54 n 45 PRO 54 A PHE 55 n 46 PHE 55 A GLY 56 n 47 GLY 56 A ASP 57 n 48 ASP 57 A VAL 58 n 49 VAL 58 A ARG 59 n 50 ARG 59 A LEU 60 n 51 LEU 60 A PRO 61 n 52 PRO 61 A PRO 62 n 53 PRO 62 A PRO 63 n 54 PRO 63 A ALA 64 n 55 ALA 64 A n 56 65 A n 57 66 A n 58 67 A n 59 68 A GLU 69 n 60 GLU 69 A ILE 70 n 61 ILE 70 A THR 71 n 62 THR 71 A GLU 72 n 63 GLU 72 A GLY 73 n 64 GLY 73 A ASP 74 n 65 ASP 74 A GLU 75 n 66 GLU 75 A VAL 76 n 67 VAL 76 A GLU 77 n 68 GLU 77 A VAL 78 n 69 VAL 78 A TYR 79 n 70 TYR 79 A SER 80 n 71 SER 80 A ARG 81 n 72 ARG 81 A ALA 82 n 73 ALA 82 A n 74 83 A n 75 84 A n 76 85 A ALA 86 n 77 GLU 86 A PRO 87 n 78 PRO 87 A CYS 88 n 79 CYS 88 A GLY 89 n 80 GLY 89 A TRP 90 n 81 TRP 90 A TRP 91 n 82 TRP 91 A LEU 92 n 83 LEU 92 A ALA 93 n 84 ALA 93 A ARG 94 n 85 ARG 94 A VAL 95 n 86 VAL 95 A ARG 96 n 87 ARG 96 A MSE 97 n 88 MSE 97 A MSE 98 n 89 MSE 98 A LYS 99 n 90 LYS 99 A GLY 100 n 91 GLY 100 A ASP 101 n 92 ASP 101 A PHE 102 n 93 PHE 102 A TYR 103 n 94 TYR 103 A VAL 104 n 95 VAL 104 A ILE 105 n 96 ILE 105 A GLU 106 n 97 GLU 106 A TYR 107 n 98 TYR 107 A ALA 108 n 99 ALA 108 A ALA 109 n 100 ALA 109 A CYS 110 n 101 CYS 110 A n 102 111 A n 103 112 A n 104 113 A n 105 114 A ASN 115 n 106 ASN 115 A GLU 116 n 107 GLU 116 A ILE 117 n 108 ILE 117 A VAL 118 n 109 VAL 118 A THR 119 n 110 THR 119 A LEU 120 n 111 LEU 120 A GLU 121 n 112 GLU 121 A ARG 122 n 113 ARG 122 A LEU 123 n 114 LEU 123 A ARG 124 n 115 ARG 124 A PRO 125 n 116 PRO 125 A VAL 126 n 117 VAL 126 A ASN 127 n 118 ASN 127 A PRO 128 n 119 PRO 128 A ASN 129 n 120 ASN 129 A PRO 130 n 121 PRO 130 A LEU 131 n 122 LEU 131 A ALA 132 n 123 ALA 132 A n 124 133 A n 125 134 A n 126 135 A n 127 136 A n 128 137 A software_defined_assembly PISA 1 monomeric A MSE 97 SELENOMETHIONINE A MSE 88 MET A MSE 98 SELENOMETHIONINE A MSE 89 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ARG 51 A O ARG 42 A N ILE 41 A N ILE 32 A O THR 40 A O THR 31 A N LYS 32 A N LYS 23 A O TYR 27 A O TYR 18 A N VAL 19 A N VAL 10 A N GLU 18 A N GLU 9 A O ARG 59 A O ARG 50 A O GLU 116 A O GLU 107 A N ILE 105 A N ILE 96 A O VAL 104 A O VAL 95 A N MSE 97 A N MSE 88 A O ALA 93 A O ALA 84 A N VAL 76 A N VAL 67 A N GLU 77 A N GLU 68 A O ARG 124 A O ARG 115 1 A CG GLU 36 A CG GLU 27 1 Y 1 A CD GLU 36 A CD GLU 27 1 Y 1 A OE1 GLU 36 A OE1 GLU 27 1 Y 1 A OE2 GLU 36 A OE2 GLU 27 1 Y 1 A CG ASP 37 A CG ASP 28 1 Y 1 A OD1 ASP 37 A OD1 ASP 28 1 Y 1 A OD2 ASP 37 A OD2 ASP 28 1 Y 1 A CG GLU 75 A CG GLU 66 1 Y 1 A CD GLU 75 A CD GLU 66 1 Y 1 A OE1 GLU 75 A OE1 GLU 66 1 Y 1 A OE2 GLU 75 A OE2 GLU 66 1 Y 1 A CG GLU 86 A CG GLU 77 1 Y 1 A CD GLU 86 A CD GLU 77 1 Y 1 A OE1 GLU 86 A OE1 GLU 77 1 Y 1 A OE2 GLU 86 A OE2 GLU 77 1 Y 1 A CG ARG 94 A CG ARG 85 1 Y 1 A CD ARG 94 A CD ARG 85 1 Y 1 A NE ARG 94 A NE ARG 85 1 Y 1 A CZ ARG 94 A CZ ARG 85 1 Y 1 A NH1 ARG 94 A NH1 ARG 85 1 Y 1 A NH2 ARG 94 A NH2 ARG 85 1 Y 1 A CG LYS 99 A CG LYS 90 1 Y 1 A CD LYS 99 A CD LYS 90 1 Y 1 A CE LYS 99 A CE LYS 90 1 Y 1 A NZ LYS 99 A NZ LYS 90 1 Y 1 A CG GLU 106 A CG GLU 97 1 Y 1 A CD GLU 106 A CD GLU 97 1 Y 1 A OE1 GLU 106 A OE1 GLU 97 1 Y 1 A OE2 GLU 106 A OE2 GLU 97 1 Y 1 A SG CYS 110 A SG CYS 101 1 Y 1 A CG GLU 121 A CG GLU 112 1 Y 1 A CD GLU 121 A CD GLU 112 1 Y 1 A OE1 GLU 121 A OE1 GLU 112 1 Y 1 A OE2 GLU 121 A OE2 GLU 112 1 Y 1 A ASP 65 A ASP 56 1 Y 1 A TYR 66 A TYR 57 1 Y 1 A ASN 67 A ASN 58 1 Y 1 A LYS 68 A LYS 59 1 Y 1 A ASN 83 A ASN 74 1 Y 1 A GLU 84 A GLU 75 1 Y 1 A GLN 85 A GLN 76 1 Y 1 A ASP 111 A ASP 102 1 Y 1 A ALA 112 A ALA 103 1 Y 1 A THR 113 A THR 104 1 Y 1 A TYR 114 A TYR 105 1 Y 1 A THR 133 A THR 124 1 Y 1 A LYS 134 A LYS 125 1 Y 1 A GLY 135 A GLY 126 1 Y 1 A SER 136 A SER 127 1 Y 1 A PHE 137 A PHE 128 1 Y 70.61 32.047 16.57 -1.180 0.000 0.000 1.880 0.000 -0.700 0.946 0.925 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.250 0.210 0.212 1.920 43.110 498 10430 4.800 97.720 1.00 0.50 3.498 0.103 RANDOM 1 THROUGHOUT 0.00 SAD 0.161 0.151 0.800 0.800 1.400 MAXIMUM LIKELIHOOD MASK 1.920 43.110 63 936 0 0 873 0.021 0.022 897 1.729 1.939 1222 6.819 5.000 108 26.756 23.023 43 13.308 15.000 123 13.748 15.000 7 0.135 0.200 130 0.008 0.020 708 0.221 0.200 328 0.314 0.200 593 0.121 0.200 59 0.152 0.200 23 0.102 0.200 7 1.525 1.500 573 2.321 2.000 890 3.349 3.000 386 4.630 4.500 332 0.336 0.263 1.969 28 589 617 20 80.760 1.920 100.000 3H8Z 10551 0.090 1.682 1 24.231 6.100 99.000 0.648 1.92 1.96 456 1.073 2.50 87.00 0.652 1.96 2.00 478 1.265 3.00 96.40 0.628 2.00 2.04 538 1.149 3.70 98.70 0.572 2.04 2.08 502 1.928 5.10 99.40 0.472 2.08 2.12 505 1.250 6.00 99.80 0.410 2.12 2.17 549 1.486 6.20 99.60 0.402 2.17 2.23 505 1.573 6.40 99.60 0.381 2.23 2.29 531 1.878 6.50 99.80 0.268 2.29 2.36 525 1.362 6.80 100.00 0.249 2.36 2.43 508 1.600 6.90 100.00 0.212 2.43 2.52 534 1.460 7.00 100.00 0.175 2.52 2.62 536 1.262 7.00 100.00 0.150 2.62 2.74 533 1.254 7.00 100.00 0.112 2.74 2.88 527 1.280 7.00 100.00 0.087 2.88 3.06 529 1.199 7.00 100.00 0.070 3.06 3.30 537 1.322 6.90 100.00 0.059 3.30 3.63 539 1.546 6.80 100.00 0.060 3.63 4.16 548 2.219 6.70 100.00 0.054 4.16 5.24 558 2.171 6.50 100.00 0.065 5.24 100.00 613 4.406 6.00 99.50 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.2.0019 data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.005 Fragile X mental retardation syndrome-related protein 2 The Crystal Structure of the Tudor Domains from FXR2 1 N N 2 N N A THR 119 A THR 110 HELX_P A GLU 121 A GLU 112 5 1 3 covale 1.323 A ARG 96 A C ARG 87 1_555 A MSE 97 A N MSE 88 1_555 covale 1.316 A MSE 97 A C MSE 88 1_555 A MSE 98 A N MSE 89 1_555 covale 1.324 A MSE 98 A C MSE 89 1_555 A LYS 99 A N LYS 90 1_555 PROTEIN BINDING Tudor domains, Fragile X mental retardation, FXR2, Structural Genomics, Structural Genomics Consortium, SGC, Phosphoprotein, RNA-binding, PROTEIN BINDING FXR2_HUMAN UNP 1 13 P51116 GLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLA RVRMMKGDFYVIEYAACDATYNEIVTLERLRPVNPNPLATKGSF 13 136 3H8Z 14 137 P51116 A 1 5 128 1 EXPRESSION TAG ALA 10 3H8Z A P51116 UNP 1 1 EXPRESSION TAG TYR 11 3H8Z A P51116 UNP 2 1 EXPRESSION TAG PHE 12 3H8Z A P51116 UNP 3 1 EXPRESSION TAG GLN 13 3H8Z A P51116 UNP 4 5 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ARG 51 A ARG 42 A PRO 54 A PRO 45 A SER 38 A SER 29 A PHE 43 A PHE 34 A PHE 26 A PHE 17 A VAL 34 A VAL 25 A PRO 16 A PRO 7 A ARG 20 A ARG 11 A VAL 58 A VAL 49 A ARG 59 A ARG 50 A GLU 116 A GLU 107 A VAL 118 A VAL 109 A PHE 102 A PHE 93 A TYR 107 A TYR 98 A GLY 89 A GLY 80 A LYS 99 A LYS 90 A GLU 75 A GLU 66 A SER 80 A SER 71 A LEU 123 A LEU 114 A PRO 125 A PRO 116 19 P 21 21 21