0.028933
0.000000
0.000000
0.000000
0.018290
0.000000
0.000000
0.000000
0.014251
0.000000
0.000000
0.000000
Amaya, M.F.
Dong, A.
Adams-Cioaba, M.A.
Guo, Y.
MacKenzie, F.
Kozieradzki, I.
Edwards, A.M.
Arrowsmith, C.H.
Bochkarev, A.
Min, J.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
34.563
54.676
70.171
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Plos One
1932-6203
5
e13559
e13559
10.1371/journal.pone.0013559
21072162
Structural Studies of the Tandem Tudor Domains of Fragile X Mental Retardation Related Proteins FXR1 and FXR2.
2010
1
2009-03-18
SINGLE WAVELENGTH
M
x-ray
1
0.97942
1.0
19-ID
APS
0.97942
SYNCHROTRON
APS BEAMLINE 19-ID
14812.163
Fragile X mental retardation syndrome-related protein 2
UNP residues 13-136
1
man
polymer
18.015
water
63
nat
water
no
yes
AYFQGLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCG
WWLARVR(MSE)(MSE)KGDFYVIEYAACDATYNEIVTLERLRPVNPNPLATKGSF
AYFQGLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCG
WWLARVRMMKGDFYVIEYAACDATYNEIVTLERLRPVNPNPLATKGSF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
FXR2, FMR1L2
9606
Homo sapiens
562
Escherichia coli
1
2.24
45.04
VAPOR DIFFUSION, HANGING DROP
8.0
10 mg/ml protein in 20 mM Tris, pH 8.0, 200 mM
NaCl, 1 mM DTT; Hanging drop vapour diffusion,20-30% Peg 3350, 0.2M MgCl2,
Hepes 7.5., VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
Structural Genomics Consortium
SGC
software
repository
Initial release
Version format compliance
Refinement description
1
0
2009-06-16
1
1
2011-07-13
1
2
2017-11-01
Y
RCSB
Y
RCSB
2009-04-29
REL
REL
HOH
water
HOH
1
2
HOH
HOH
1
A
HOH
2
2
HOH
HOH
2
A
HOH
3
2
HOH
HOH
3
A
HOH
4
2
HOH
HOH
4
A
HOH
5
2
HOH
HOH
5
A
HOH
6
2
HOH
HOH
6
A
HOH
7
2
HOH
HOH
7
A
HOH
8
2
HOH
HOH
8
A
HOH
9
2
HOH
HOH
9
A
HOH
10
2
HOH
HOH
138
A
HOH
11
2
HOH
HOH
139
A
HOH
12
2
HOH
HOH
140
A
HOH
13
2
HOH
HOH
141
A
HOH
14
2
HOH
HOH
142
A
HOH
15
2
HOH
HOH
143
A
HOH
16
2
HOH
HOH
144
A
HOH
17
2
HOH
HOH
145
A
HOH
18
2
HOH
HOH
146
A
HOH
19
2
HOH
HOH
147
A
HOH
20
2
HOH
HOH
148
A
HOH
22
2
HOH
HOH
149
A
HOH
23
2
HOH
HOH
150
A
HOH
24
2
HOH
HOH
151
A
HOH
26
2
HOH
HOH
152
A
HOH
27
2
HOH
HOH
153
A
HOH
28
2
HOH
HOH
154
A
HOH
29
2
HOH
HOH
155
A
HOH
30
2
HOH
HOH
156
A
HOH
31
2
HOH
HOH
157
A
HOH
33
2
HOH
HOH
158
A
HOH
34
2
HOH
HOH
159
A
HOH
35
2
HOH
HOH
160
A
HOH
36
2
HOH
HOH
161
A
HOH
37
2
HOH
HOH
162
A
HOH
38
2
HOH
HOH
163
A
HOH
39
2
HOH
HOH
164
A
HOH
40
2
HOH
HOH
165
A
HOH
41
2
HOH
HOH
166
A
HOH
42
2
HOH
HOH
167
A
HOH
43
2
HOH
HOH
168
A
HOH
44
2
HOH
HOH
169
A
HOH
45
2
HOH
HOH
170
A
HOH
46
2
HOH
HOH
171
A
HOH
47
2
HOH
HOH
172
A
HOH
48
2
HOH
HOH
173
A
HOH
49
2
HOH
HOH
174
A
HOH
50
2
HOH
HOH
175
A
HOH
51
2
HOH
HOH
176
A
HOH
52
2
HOH
HOH
177
A
HOH
53
2
HOH
HOH
178
A
HOH
54
2
HOH
HOH
179
A
HOH
55
2
HOH
HOH
180
A
HOH
56
2
HOH
HOH
181
A
HOH
57
2
HOH
HOH
182
A
HOH
58
2
HOH
HOH
183
A
HOH
61
2
HOH
HOH
184
A
HOH
62
2
HOH
HOH
185
A
HOH
63
2
HOH
HOH
186
A
HOH
64
2
HOH
HOH
187
A
HOH
65
2
HOH
HOH
188
A
HOH
66
2
HOH
HOH
189
A
HOH
67
2
HOH
HOH
190
A
HOH
72
2
HOH
HOH
191
A
ALA
10
n
1
ALA
10
A
TYR
11
n
2
TYR
11
A
PHE
12
n
3
PHE
12
A
GLN
13
n
4
GLN
13
A
GLY
14
n
5
GLY
14
A
LEU
15
n
6
LEU
15
A
PRO
16
n
7
PRO
16
A
VAL
17
n
8
VAL
17
A
GLU
18
n
9
GLU
18
A
VAL
19
n
10
VAL
19
A
ARG
20
n
11
ARG
20
A
GLY
21
n
12
GLY
21
A
SER
22
n
13
SER
22
A
ASN
23
n
14
ASN
23
A
GLY
24
n
15
GLY
24
A
ALA
25
n
16
ALA
25
A
PHE
26
n
17
PHE
26
A
TYR
27
n
18
TYR
27
A
LYS
28
n
19
LYS
28
A
GLY
29
n
20
GLY
29
A
PHE
30
n
21
PHE
30
A
VAL
31
n
22
VAL
31
A
LYS
32
n
23
LYS
32
A
ASP
33
n
24
ASP
33
A
VAL
34
n
25
VAL
34
A
HIS
35
n
26
HIS
35
A
GLU
36
n
27
GLU
36
A
ASP
37
n
28
ASP
37
A
SER
38
n
29
SER
38
A
VAL
39
n
30
VAL
39
A
THR
40
n
31
THR
40
A
ILE
41
n
32
ILE
41
A
PHE
42
n
33
PHE
42
A
PHE
43
n
34
PHE
43
A
GLU
44
n
35
GLU
44
A
ASN
45
n
36
ASN
45
A
ASN
46
n
37
ASN
46
A
TRP
47
n
38
TRP
47
A
GLN
48
n
39
GLN
48
A
SER
49
n
40
SER
49
A
GLU
50
n
41
GLU
50
A
ARG
51
n
42
ARG
51
A
GLN
52
n
43
GLN
52
A
ILE
53
n
44
ILE
53
A
PRO
54
n
45
PRO
54
A
PHE
55
n
46
PHE
55
A
GLY
56
n
47
GLY
56
A
ASP
57
n
48
ASP
57
A
VAL
58
n
49
VAL
58
A
ARG
59
n
50
ARG
59
A
LEU
60
n
51
LEU
60
A
PRO
61
n
52
PRO
61
A
PRO
62
n
53
PRO
62
A
PRO
63
n
54
PRO
63
A
ALA
64
n
55
ALA
64
A
n
56
65
A
n
57
66
A
n
58
67
A
n
59
68
A
GLU
69
n
60
GLU
69
A
ILE
70
n
61
ILE
70
A
THR
71
n
62
THR
71
A
GLU
72
n
63
GLU
72
A
GLY
73
n
64
GLY
73
A
ASP
74
n
65
ASP
74
A
GLU
75
n
66
GLU
75
A
VAL
76
n
67
VAL
76
A
GLU
77
n
68
GLU
77
A
VAL
78
n
69
VAL
78
A
TYR
79
n
70
TYR
79
A
SER
80
n
71
SER
80
A
ARG
81
n
72
ARG
81
A
ALA
82
n
73
ALA
82
A
n
74
83
A
n
75
84
A
n
76
85
A
ALA
86
n
77
GLU
86
A
PRO
87
n
78
PRO
87
A
CYS
88
n
79
CYS
88
A
GLY
89
n
80
GLY
89
A
TRP
90
n
81
TRP
90
A
TRP
91
n
82
TRP
91
A
LEU
92
n
83
LEU
92
A
ALA
93
n
84
ALA
93
A
ARG
94
n
85
ARG
94
A
VAL
95
n
86
VAL
95
A
ARG
96
n
87
ARG
96
A
MSE
97
n
88
MSE
97
A
MSE
98
n
89
MSE
98
A
LYS
99
n
90
LYS
99
A
GLY
100
n
91
GLY
100
A
ASP
101
n
92
ASP
101
A
PHE
102
n
93
PHE
102
A
TYR
103
n
94
TYR
103
A
VAL
104
n
95
VAL
104
A
ILE
105
n
96
ILE
105
A
GLU
106
n
97
GLU
106
A
TYR
107
n
98
TYR
107
A
ALA
108
n
99
ALA
108
A
ALA
109
n
100
ALA
109
A
CYS
110
n
101
CYS
110
A
n
102
111
A
n
103
112
A
n
104
113
A
n
105
114
A
ASN
115
n
106
ASN
115
A
GLU
116
n
107
GLU
116
A
ILE
117
n
108
ILE
117
A
VAL
118
n
109
VAL
118
A
THR
119
n
110
THR
119
A
LEU
120
n
111
LEU
120
A
GLU
121
n
112
GLU
121
A
ARG
122
n
113
ARG
122
A
LEU
123
n
114
LEU
123
A
ARG
124
n
115
ARG
124
A
PRO
125
n
116
PRO
125
A
VAL
126
n
117
VAL
126
A
ASN
127
n
118
ASN
127
A
PRO
128
n
119
PRO
128
A
ASN
129
n
120
ASN
129
A
PRO
130
n
121
PRO
130
A
LEU
131
n
122
LEU
131
A
ALA
132
n
123
ALA
132
A
n
124
133
A
n
125
134
A
n
126
135
A
n
127
136
A
n
128
137
A
software_defined_assembly
PISA
1
monomeric
A
MSE
97
SELENOMETHIONINE
A
MSE
88
MET
A
MSE
98
SELENOMETHIONINE
A
MSE
89
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ARG
51
A
O
ARG
42
A
N
ILE
41
A
N
ILE
32
A
O
THR
40
A
O
THR
31
A
N
LYS
32
A
N
LYS
23
A
O
TYR
27
A
O
TYR
18
A
N
VAL
19
A
N
VAL
10
A
N
GLU
18
A
N
GLU
9
A
O
ARG
59
A
O
ARG
50
A
O
GLU
116
A
O
GLU
107
A
N
ILE
105
A
N
ILE
96
A
O
VAL
104
A
O
VAL
95
A
N
MSE
97
A
N
MSE
88
A
O
ALA
93
A
O
ALA
84
A
N
VAL
76
A
N
VAL
67
A
N
GLU
77
A
N
GLU
68
A
O
ARG
124
A
O
ARG
115
1
A
CG
GLU
36
A
CG
GLU
27
1
Y
1
A
CD
GLU
36
A
CD
GLU
27
1
Y
1
A
OE1
GLU
36
A
OE1
GLU
27
1
Y
1
A
OE2
GLU
36
A
OE2
GLU
27
1
Y
1
A
CG
ASP
37
A
CG
ASP
28
1
Y
1
A
OD1
ASP
37
A
OD1
ASP
28
1
Y
1
A
OD2
ASP
37
A
OD2
ASP
28
1
Y
1
A
CG
GLU
75
A
CG
GLU
66
1
Y
1
A
CD
GLU
75
A
CD
GLU
66
1
Y
1
A
OE1
GLU
75
A
OE1
GLU
66
1
Y
1
A
OE2
GLU
75
A
OE2
GLU
66
1
Y
1
A
CG
GLU
86
A
CG
GLU
77
1
Y
1
A
CD
GLU
86
A
CD
GLU
77
1
Y
1
A
OE1
GLU
86
A
OE1
GLU
77
1
Y
1
A
OE2
GLU
86
A
OE2
GLU
77
1
Y
1
A
CG
ARG
94
A
CG
ARG
85
1
Y
1
A
CD
ARG
94
A
CD
ARG
85
1
Y
1
A
NE
ARG
94
A
NE
ARG
85
1
Y
1
A
CZ
ARG
94
A
CZ
ARG
85
1
Y
1
A
NH1
ARG
94
A
NH1
ARG
85
1
Y
1
A
NH2
ARG
94
A
NH2
ARG
85
1
Y
1
A
CG
LYS
99
A
CG
LYS
90
1
Y
1
A
CD
LYS
99
A
CD
LYS
90
1
Y
1
A
CE
LYS
99
A
CE
LYS
90
1
Y
1
A
NZ
LYS
99
A
NZ
LYS
90
1
Y
1
A
CG
GLU
106
A
CG
GLU
97
1
Y
1
A
CD
GLU
106
A
CD
GLU
97
1
Y
1
A
OE1
GLU
106
A
OE1
GLU
97
1
Y
1
A
OE2
GLU
106
A
OE2
GLU
97
1
Y
1
A
SG
CYS
110
A
SG
CYS
101
1
Y
1
A
CG
GLU
121
A
CG
GLU
112
1
Y
1
A
CD
GLU
121
A
CD
GLU
112
1
Y
1
A
OE1
GLU
121
A
OE1
GLU
112
1
Y
1
A
OE2
GLU
121
A
OE2
GLU
112
1
Y
1
A
ASP
65
A
ASP
56
1
Y
1
A
TYR
66
A
TYR
57
1
Y
1
A
ASN
67
A
ASN
58
1
Y
1
A
LYS
68
A
LYS
59
1
Y
1
A
ASN
83
A
ASN
74
1
Y
1
A
GLU
84
A
GLU
75
1
Y
1
A
GLN
85
A
GLN
76
1
Y
1
A
ASP
111
A
ASP
102
1
Y
1
A
ALA
112
A
ALA
103
1
Y
1
A
THR
113
A
THR
104
1
Y
1
A
TYR
114
A
TYR
105
1
Y
1
A
THR
133
A
THR
124
1
Y
1
A
LYS
134
A
LYS
125
1
Y
1
A
GLY
135
A
GLY
126
1
Y
1
A
SER
136
A
SER
127
1
Y
1
A
PHE
137
A
PHE
128
1
Y
70.61
32.047
16.57
-1.180
0.000
0.000
1.880
0.000
-0.700
0.946
0.925
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.250
0.210
0.212
1.920
43.110
498
10430
4.800
97.720
1.00
0.50
3.498
0.103
RANDOM
1
THROUGHOUT
0.00
SAD
0.161
0.151
0.800
0.800
1.400
MAXIMUM LIKELIHOOD
MASK
1.920
43.110
63
936
0
0
873
0.021
0.022
897
1.729
1.939
1222
6.819
5.000
108
26.756
23.023
43
13.308
15.000
123
13.748
15.000
7
0.135
0.200
130
0.008
0.020
708
0.221
0.200
328
0.314
0.200
593
0.121
0.200
59
0.152
0.200
23
0.102
0.200
7
1.525
1.500
573
2.321
2.000
890
3.349
3.000
386
4.630
4.500
332
0.336
0.263
1.969
28
589
617
20
80.760
1.920
100.000
3H8Z
10551
0.090
1.682
1
24.231
6.100
99.000
0.648
1.92
1.96
456
1.073
2.50
87.00
0.652
1.96
2.00
478
1.265
3.00
96.40
0.628
2.00
2.04
538
1.149
3.70
98.70
0.572
2.04
2.08
502
1.928
5.10
99.40
0.472
2.08
2.12
505
1.250
6.00
99.80
0.410
2.12
2.17
549
1.486
6.20
99.60
0.402
2.17
2.23
505
1.573
6.40
99.60
0.381
2.23
2.29
531
1.878
6.50
99.80
0.268
2.29
2.36
525
1.362
6.80
100.00
0.249
2.36
2.43
508
1.600
6.90
100.00
0.212
2.43
2.52
534
1.460
7.00
100.00
0.175
2.52
2.62
536
1.262
7.00
100.00
0.150
2.62
2.74
533
1.254
7.00
100.00
0.112
2.74
2.88
527
1.280
7.00
100.00
0.087
2.88
3.06
529
1.199
7.00
100.00
0.070
3.06
3.30
537
1.322
6.90
100.00
0.059
3.30
3.63
539
1.546
6.80
100.00
0.060
3.63
4.16
548
2.219
6.70
100.00
0.054
4.16
5.24
558
2.171
6.50
100.00
0.065
5.24
100.00
613
4.406
6.00
99.50
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.2.0019
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.005
Fragile X mental retardation syndrome-related protein 2
The Crystal Structure of the Tudor Domains from FXR2
1
N
N
2
N
N
A
THR
119
A
THR
110
HELX_P
A
GLU
121
A
GLU
112
5
1
3
covale
1.323
A
ARG
96
A
C
ARG
87
1_555
A
MSE
97
A
N
MSE
88
1_555
covale
1.316
A
MSE
97
A
C
MSE
88
1_555
A
MSE
98
A
N
MSE
89
1_555
covale
1.324
A
MSE
98
A
C
MSE
89
1_555
A
LYS
99
A
N
LYS
90
1_555
PROTEIN BINDING
Tudor domains, Fragile X mental retardation, FXR2, Structural Genomics, Structural Genomics Consortium, SGC, Phosphoprotein, RNA-binding, PROTEIN BINDING
FXR2_HUMAN
UNP
1
13
P51116
GLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLA
RVRMMKGDFYVIEYAACDATYNEIVTLERLRPVNPNPLATKGSF
13
136
3H8Z
14
137
P51116
A
1
5
128
1
EXPRESSION TAG
ALA
10
3H8Z
A
P51116
UNP
1
1
EXPRESSION TAG
TYR
11
3H8Z
A
P51116
UNP
2
1
EXPRESSION TAG
PHE
12
3H8Z
A
P51116
UNP
3
1
EXPRESSION TAG
GLN
13
3H8Z
A
P51116
UNP
4
5
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
51
A
ARG
42
A
PRO
54
A
PRO
45
A
SER
38
A
SER
29
A
PHE
43
A
PHE
34
A
PHE
26
A
PHE
17
A
VAL
34
A
VAL
25
A
PRO
16
A
PRO
7
A
ARG
20
A
ARG
11
A
VAL
58
A
VAL
49
A
ARG
59
A
ARG
50
A
GLU
116
A
GLU
107
A
VAL
118
A
VAL
109
A
PHE
102
A
PHE
93
A
TYR
107
A
TYR
98
A
GLY
89
A
GLY
80
A
LYS
99
A
LYS
90
A
GLU
75
A
GLU
66
A
SER
80
A
SER
71
A
LEU
123
A
LEU
114
A
PRO
125
A
PRO
116
19
P 21 21 21