0.017358
0.000000
0.000000
0.000000
0.017358
0.000000
0.000000
0.000000
0.006122
0.00000
0.00000
0.00000
Lee, S.
Antony, L.
Hartmann, R.
Knaus, K.J.
Surewicz, K.
Surewicz, W.K.
Yee, V.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
57.611
57.611
163.337
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cd 2
112.411
CADMIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Embo J.
EMJODG
0897
0261-4189
29
251
262
10.1038/emboj.2009.333
19927125
Conformational diversity in prion protein variants influences intermolecular beta-sheet formation.
2010
10.2210/pdb3her/pdb
pdb_00003her
100
1
2008-03-06
SINGLE WAVELENGTH
M
x-ray
1
0.9786
1.0
19-ID
APS
0.9786
SYNCHROTRON
APS BEAMLINE 19-ID
16076.835
Major prion protein
UNP residues 90-231
F198S
2
man
polymer
112.411
CADMIUM ION
2
syn
non-polymer
18.015
water
138
nat
water
PrP, PrP27-30, PrP33-35C, ASCR
no
no
GQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYVLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEY
SNQNNFVHDCVNITIKQHTVTTTTKGENSTETDVKMMERVVEQMCITQYERESQAYYQRGSS
GQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYVLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEY
SNQNNFVHDCVNITIKQHTVTTTTKGENSTETDVKMMERVVEQMCITQYERESQAYYQRGSS
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
PRNP, PRIP, PRP
9606
Homo sapiens
562
Escherichia coli
1
2.11
41.64
VAPOR DIFFUSION, SITTING DROP
8.5
0.1 M Tris, 0.2 M Mg acetate, 8% PEG 6K, 5 mM CdCl2, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
software
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Refinement description
Database references
Derived calculations
1
0
2010-01-12
1
1
2011-07-13
1
2
2017-11-01
1
3
2021-10-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2009-05-10
REL
REL
CD
CADMIUM ION
HOH
water
CD
300
2
CD
CD
300
A
CD
301
2
CD
CD
301
B
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
346
3
HOH
HOH
346
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
HOH
351
3
HOH
HOH
351
A
HOH
352
3
HOH
HOH
352
A
HOH
353
3
HOH
HOH
353
A
HOH
354
3
HOH
HOH
354
A
HOH
355
3
HOH
HOH
355
A
HOH
356
3
HOH
HOH
356
A
HOH
357
3
HOH
HOH
357
A
HOH
358
3
HOH
HOH
358
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
HOH
361
3
HOH
HOH
361
A
HOH
362
3
HOH
HOH
362
A
HOH
363
3
HOH
HOH
363
A
HOH
364
3
HOH
HOH
364
A
HOH
365
3
HOH
HOH
365
A
HOH
366
3
HOH
HOH
366
A
HOH
367
3
HOH
HOH
367
A
HOH
368
3
HOH
HOH
368
A
HOH
369
3
HOH
HOH
369
A
HOH
370
3
HOH
HOH
370
A
HOH
371
3
HOH
HOH
371
A
HOH
372
3
HOH
HOH
372
A
HOH
373
3
HOH
HOH
373
A
HOH
374
3
HOH
HOH
374
A
HOH
375
3
HOH
HOH
375
A
HOH
376
3
HOH
HOH
376
A
HOH
377
3
HOH
HOH
377
A
HOH
378
3
HOH
HOH
378
A
HOH
379
3
HOH
HOH
379
A
HOH
380
3
HOH
HOH
380
A
HOH
381
3
HOH
HOH
381
A
HOH
382
3
HOH
HOH
382
A
HOH
383
3
HOH
HOH
383
A
HOH
384
3
HOH
HOH
384
A
HOH
385
3
HOH
HOH
385
A
HOH
386
3
HOH
HOH
386
A
HOH
387
3
HOH
HOH
387
A
HOH
388
3
HOH
HOH
388
B
HOH
389
3
HOH
HOH
389
B
HOH
390
3
HOH
HOH
390
B
HOH
391
3
HOH
HOH
391
B
HOH
392
3
HOH
HOH
392
B
HOH
393
3
HOH
HOH
393
B
HOH
394
3
HOH
HOH
394
B
HOH
395
3
HOH
HOH
395
B
HOH
396
3
HOH
HOH
396
B
HOH
397
3
HOH
HOH
397
B
HOH
398
3
HOH
HOH
398
B
HOH
399
3
HOH
HOH
399
B
HOH
400
3
HOH
HOH
400
B
HOH
401
3
HOH
HOH
401
B
HOH
402
3
HOH
HOH
402
B
HOH
403
3
HOH
HOH
403
B
HOH
404
3
HOH
HOH
404
B
HOH
405
3
HOH
HOH
405
B
HOH
406
3
HOH
HOH
406
B
HOH
407
3
HOH
HOH
407
B
HOH
408
3
HOH
HOH
408
B
HOH
409
3
HOH
HOH
409
B
HOH
410
3
HOH
HOH
410
B
HOH
411
3
HOH
HOH
411
B
HOH
412
3
HOH
HOH
412
B
HOH
413
3
HOH
HOH
413
B
HOH
414
3
HOH
HOH
414
B
HOH
415
3
HOH
HOH
415
B
HOH
416
3
HOH
HOH
416
B
HOH
417
3
HOH
HOH
417
B
HOH
418
3
HOH
HOH
418
B
HOH
419
3
HOH
HOH
419
B
HOH
420
3
HOH
HOH
420
B
HOH
421
3
HOH
HOH
421
B
HOH
422
3
HOH
HOH
422
B
HOH
423
3
HOH
HOH
423
B
HOH
424
3
HOH
HOH
424
B
HOH
425
3
HOH
HOH
425
B
HOH
426
3
HOH
HOH
426
B
HOH
427
3
HOH
HOH
427
B
HOH
428
3
HOH
HOH
428
B
HOH
429
3
HOH
HOH
429
B
HOH
430
3
HOH
HOH
430
B
HOH
431
3
HOH
HOH
431
B
HOH
432
3
HOH
HOH
432
B
HOH
433
3
HOH
HOH
433
B
HOH
434
3
HOH
HOH
434
B
HOH
435
3
HOH
HOH
435
B
HOH
436
3
HOH
HOH
436
B
HOH
437
3
HOH
HOH
437
B
HOH
438
3
HOH
HOH
438
B
HOH
439
3
HOH
HOH
439
B
n
1
90
A
n
2
91
A
n
3
92
A
n
4
93
A
n
5
94
A
n
6
95
A
n
7
96
A
n
8
97
A
n
9
98
A
n
10
99
A
n
11
100
A
n
12
101
A
n
13
102
A
n
14
103
A
n
15
104
A
n
16
105
A
n
17
106
A
n
18
107
A
n
19
108
A
n
20
109
A
n
21
110
A
n
22
111
A
n
23
112
A
n
24
113
A
n
25
114
A
n
26
115
A
n
27
116
A
n
28
117
A
n
29
118
A
n
30
119
A
n
31
120
A
n
32
121
A
n
33
122
A
n
34
123
A
n
35
124
A
LEU
125
n
36
LEU
125
A
GLY
126
n
37
GLY
126
A
GLY
127
n
38
GLY
127
A
TYR
128
n
39
TYR
128
A
VAL
129
n
40
VAL
129
A
LEU
130
n
41
LEU
130
A
GLY
131
n
42
GLY
131
A
SER
132
n
43
SER
132
A
ALA
133
n
44
ALA
133
A
MET
134
n
45
MET
134
A
SER
135
n
46
SER
135
A
ARG
136
n
47
ARG
136
A
PRO
137
n
48
PRO
137
A
ILE
138
n
49
ILE
138
A
ILE
139
n
50
ILE
139
A
HIS
140
n
51
HIS
140
A
PHE
141
n
52
PHE
141
A
GLY
142
n
53
GLY
142
A
SER
143
n
54
SER
143
A
ASP
144
n
55
ASP
144
A
TYR
145
n
56
TYR
145
A
GLU
146
n
57
GLU
146
A
ASP
147
n
58
ASP
147
A
ARG
148
n
59
ARG
148
A
TYR
149
n
60
TYR
149
A
TYR
150
n
61
TYR
150
A
ARG
151
n
62
ARG
151
A
GLU
152
n
63
GLU
152
A
ASN
153
n
64
ASN
153
A
MET
154
n
65
MET
154
A
HIS
155
n
66
HIS
155
A
ARG
156
n
67
ARG
156
A
TYR
157
n
68
TYR
157
A
PRO
158
n
69
PRO
158
A
ASN
159
n
70
ASN
159
A
GLN
160
n
71
GLN
160
A
VAL
161
n
72
VAL
161
A
TYR
162
n
73
TYR
162
A
TYR
163
n
74
TYR
163
A
ARG
164
n
75
ARG
164
A
PRO
165
n
76
PRO
165
A
MET
166
n
77
MET
166
A
ASP
167
n
78
ASP
167
A
GLU
168
n
79
GLU
168
A
TYR
169
n
80
TYR
169
A
SER
170
n
81
SER
170
A
ASN
171
n
82
ASN
171
A
GLN
172
n
83
GLN
172
A
ASN
173
n
84
ASN
173
A
ASN
174
n
85
ASN
174
A
PHE
175
n
86
PHE
175
A
VAL
176
n
87
VAL
176
A
HIS
177
n
88
HIS
177
A
ASP
178
n
89
ASP
178
A
CYS
179
n
90
CYS
179
A
VAL
180
n
91
VAL
180
A
ASN
181
n
92
ASN
181
A
ILE
182
n
93
ILE
182
A
THR
183
n
94
THR
183
A
ILE
184
n
95
ILE
184
A
LYS
185
n
96
LYS
185
A
GLN
186
n
97
GLN
186
A
HIS
187
n
98
HIS
187
A
THR
188
n
99
THR
188
A
VAL
189
n
100
VAL
189
A
THR
190
n
101
THR
190
A
THR
191
n
102
THR
191
A
THR
192
n
103
THR
192
A
n
104
193
A
n
105
194
A
n
106
195
A
n
107
196
A
n
108
197
A
SER
198
n
109
SER
198
A
THR
199
n
110
THR
199
A
GLU
200
n
111
GLU
200
A
THR
201
n
112
THR
201
A
ASP
202
n
113
ASP
202
A
VAL
203
n
114
VAL
203
A
LYS
204
n
115
LYS
204
A
MET
205
n
116
MET
205
A
MET
206
n
117
MET
206
A
GLU
207
n
118
GLU
207
A
ARG
208
n
119
ARG
208
A
VAL
209
n
120
VAL
209
A
VAL
210
n
121
VAL
210
A
GLU
211
n
122
GLU
211
A
GLN
212
n
123
GLN
212
A
MET
213
n
124
MET
213
A
CYS
214
n
125
CYS
214
A
ILE
215
n
126
ILE
215
A
THR
216
n
127
THR
216
A
GLN
217
n
128
GLN
217
A
TYR
218
n
129
TYR
218
A
GLU
219
n
130
GLU
219
A
ARG
220
n
131
ARG
220
A
GLU
221
n
132
GLU
221
A
SER
222
n
133
SER
222
A
GLN
223
n
134
GLN
223
A
ALA
224
n
135
ALA
224
A
TYR
225
n
136
TYR
225
A
TYR
226
n
137
TYR
226
A
n
138
227
A
n
139
228
A
n
140
229
A
n
141
230
A
n
142
231
A
n
1
90
B
n
2
91
B
n
3
92
B
n
4
93
B
n
5
94
B
n
6
95
B
n
7
96
B
n
8
97
B
n
9
98
B
n
10
99
B
n
11
100
B
n
12
101
B
n
13
102
B
n
14
103
B
n
15
104
B
n
16
105
B
n
17
106
B
n
18
107
B
n
19
108
B
n
20
109
B
n
21
110
B
n
22
111
B
n
23
112
B
n
24
113
B
n
25
114
B
n
26
115
B
n
27
116
B
n
28
117
B
n
29
118
B
n
30
119
B
n
31
120
B
n
32
121
B
n
33
122
B
n
34
123
B
n
35
124
B
n
36
125
B
GLY
126
n
37
GLY
126
B
GLY
127
n
38
GLY
127
B
TYR
128
n
39
TYR
128
B
VAL
129
n
40
VAL
129
B
LEU
130
n
41
LEU
130
B
GLY
131
n
42
GLY
131
B
SER
132
n
43
SER
132
B
ALA
133
n
44
ALA
133
B
MET
134
n
45
MET
134
B
SER
135
n
46
SER
135
B
ARG
136
n
47
ARG
136
B
PRO
137
n
48
PRO
137
B
ILE
138
n
49
ILE
138
B
ILE
139
n
50
ILE
139
B
HIS
140
n
51
HIS
140
B
PHE
141
n
52
PHE
141
B
GLY
142
n
53
GLY
142
B
SER
143
n
54
SER
143
B
ASP
144
n
55
ASP
144
B
TYR
145
n
56
TYR
145
B
GLU
146
n
57
GLU
146
B
ASP
147
n
58
ASP
147
B
ARG
148
n
59
ARG
148
B
TYR
149
n
60
TYR
149
B
TYR
150
n
61
TYR
150
B
ARG
151
n
62
ARG
151
B
GLU
152
n
63
GLU
152
B
ASN
153
n
64
ASN
153
B
MET
154
n
65
MET
154
B
HIS
155
n
66
HIS
155
B
ARG
156
n
67
ARG
156
B
TYR
157
n
68
TYR
157
B
PRO
158
n
69
PRO
158
B
ASN
159
n
70
ASN
159
B
GLN
160
n
71
GLN
160
B
VAL
161
n
72
VAL
161
B
TYR
162
n
73
TYR
162
B
TYR
163
n
74
TYR
163
B
ARG
164
n
75
ARG
164
B
PRO
165
n
76
PRO
165
B
MET
166
n
77
MET
166
B
ASP
167
n
78
ASP
167
B
GLU
168
n
79
GLU
168
B
TYR
169
n
80
TYR
169
B
SER
170
n
81
SER
170
B
ASN
171
n
82
ASN
171
B
GLN
172
n
83
GLN
172
B
ASN
173
n
84
ASN
173
B
ASN
174
n
85
ASN
174
B
PHE
175
n
86
PHE
175
B
VAL
176
n
87
VAL
176
B
HIS
177
n
88
HIS
177
B
ASP
178
n
89
ASP
178
B
CYS
179
n
90
CYS
179
B
VAL
180
n
91
VAL
180
B
ASN
181
n
92
ASN
181
B
ILE
182
n
93
ILE
182
B
THR
183
n
94
THR
183
B
ILE
184
n
95
ILE
184
B
LYS
185
n
96
LYS
185
B
GLN
186
n
97
GLN
186
B
HIS
187
n
98
HIS
187
B
THR
188
n
99
THR
188
B
VAL
189
n
100
VAL
189
B
THR
190
n
101
THR
190
B
n
102
191
B
n
103
192
B
n
104
193
B
n
105
194
B
n
106
195
B
n
107
196
B
n
108
197
B
SER
198
n
109
SER
198
B
THR
199
n
110
THR
199
B
GLU
200
n
111
GLU
200
B
THR
201
n
112
THR
201
B
ASP
202
n
113
ASP
202
B
VAL
203
n
114
VAL
203
B
LYS
204
n
115
LYS
204
B
MET
205
n
116
MET
205
B
MET
206
n
117
MET
206
B
GLU
207
n
118
GLU
207
B
ARG
208
n
119
ARG
208
B
VAL
209
n
120
VAL
209
B
VAL
210
n
121
VAL
210
B
GLU
211
n
122
GLU
211
B
GLN
212
n
123
GLN
212
B
MET
213
n
124
MET
213
B
CYS
214
n
125
CYS
214
B
ILE
215
n
126
ILE
215
B
THR
216
n
127
THR
216
B
GLN
217
n
128
GLN
217
B
TYR
218
n
129
TYR
218
B
GLU
219
n
130
GLU
219
B
ARG
220
n
131
ARG
220
B
GLU
221
n
132
GLU
221
B
SER
222
n
133
SER
222
B
GLN
223
n
134
GLN
223
B
ALA
224
n
135
ALA
224
B
TYR
225
n
136
TYR
225
B
TYR
226
n
137
TYR
226
B
GLN
227
n
138
GLN
227
B
n
139
228
B
n
140
229
B
n
141
230
B
n
142
231
B
software_defined_assembly
PISA
2
dimeric
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
1890
-15
11090
A
HIS
140
A
ND1
HIS
51
1_555
A
CD
300
C
CD
CD
1_555
A
ASP
147
A
OD1
ASP
58
1_555
160.9
A
HIS
140
A
ND1
HIS
51
1_555
A
CD
300
C
CD
CD
1_555
A
ASP
147
A
OD2
ASP
58
1_555
109.6
A
ASP
147
A
OD1
ASP
58
1_555
A
CD
300
C
CD
CD
1_555
A
ASP
147
A
OD2
ASP
58
1_555
54.7
A
HIS
140
A
ND1
HIS
51
1_555
A
CD
300
C
CD
CD
1_555
A
HOH
324
E
O
HOH
1_555
98.0
A
ASP
147
A
OD1
ASP
58
1_555
A
CD
300
C
CD
CD
1_555
A
HOH
324
E
O
HOH
1_555
91.8
A
ASP
147
A
OD2
ASP
58
1_555
A
CD
300
C
CD
CD
1_555
A
HOH
324
E
O
HOH
1_555
85.4
A
HIS
140
A
ND1
HIS
51
1_555
A
CD
300
C
CD
CD
1_555
A
HOH
325
E
O
HOH
1_555
84.8
A
ASP
147
A
OD1
ASP
58
1_555
A
CD
300
C
CD
CD
1_555
A
HOH
325
E
O
HOH
1_555
84.4
A
ASP
147
A
OD2
ASP
58
1_555
A
CD
300
C
CD
CD
1_555
A
HOH
325
E
O
HOH
1_555
90.1
A
HOH
324
E
O
HOH
1_555
A
CD
300
C
CD
CD
1_555
A
HOH
325
E
O
HOH
1_555
175.3
B
HIS
140
B
ND1
HIS
51
1_555
B
CD
301
D
CD
CD
1_555
B
ASP
147
B
OD1
ASP
58
1_555
162.9
B
HIS
140
B
ND1
HIS
51
1_555
B
CD
301
D
CD
CD
1_555
B
ASP
147
B
OD2
ASP
58
1_555
116.9
B
ASP
147
B
OD1
ASP
58
1_555
B
CD
301
D
CD
CD
1_555
B
ASP
147
B
OD2
ASP
58
1_555
51.0
B
HIS
140
B
ND1
HIS
51
1_555
B
CD
301
D
CD
CD
1_555
B
HOH
438
F
O
HOH
1_555
85.9
B
ASP
147
B
OD1
ASP
58
1_555
B
CD
301
D
CD
CD
1_555
B
HOH
438
F
O
HOH
1_555
79.3
B
ASP
147
B
OD2
ASP
58
1_555
B
CD
301
D
CD
CD
1_555
B
HOH
438
F
O
HOH
1_555
75.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_654
-x+3/2,y+1/2,-z-1/4
crystal symmetry operation
86.4165000000
28.8055000000
-40.8342500000
A
N
VAL
129
A
N
VAL
40
A
O
TYR
163
A
O
TYR
74
B
N
VAL
129
B
N
VAL
40
B
O
TYR
163
B
O
TYR
74
1
A
GLY
90
A
GLY
1
1
Y
1
A
GLN
91
A
GLN
2
1
Y
1
A
GLY
92
A
GLY
3
1
Y
1
A
GLY
93
A
GLY
4
1
Y
1
A
GLY
94
A
GLY
5
1
Y
1
A
THR
95
A
THR
6
1
Y
1
A
HIS
96
A
HIS
7
1
Y
1
A
SER
97
A
SER
8
1
Y
1
A
GLN
98
A
GLN
9
1
Y
1
A
TRP
99
A
TRP
10
1
Y
1
A
ASN
100
A
ASN
11
1
Y
1
A
LYS
101
A
LYS
12
1
Y
1
A
PRO
102
A
PRO
13
1
Y
1
A
SER
103
A
SER
14
1
Y
1
A
LYS
104
A
LYS
15
1
Y
1
A
PRO
105
A
PRO
16
1
Y
1
A
LYS
106
A
LYS
17
1
Y
1
A
THR
107
A
THR
18
1
Y
1
A
ASN
108
A
ASN
19
1
Y
1
A
MET
109
A
MET
20
1
Y
1
A
LYS
110
A
LYS
21
1
Y
1
A
HIS
111
A
HIS
22
1
Y
1
A
MET
112
A
MET
23
1
Y
1
A
ALA
113
A
ALA
24
1
Y
1
A
GLY
114
A
GLY
25
1
Y
1
A
ALA
115
A
ALA
26
1
Y
1
A
ALA
116
A
ALA
27
1
Y
1
A
ALA
117
A
ALA
28
1
Y
1
A
ALA
118
A
ALA
29
1
Y
1
A
GLY
119
A
GLY
30
1
Y
1
A
ALA
120
A
ALA
31
1
Y
1
A
VAL
121
A
VAL
32
1
Y
1
A
VAL
122
A
VAL
33
1
Y
1
A
GLY
123
A
GLY
34
1
Y
1
A
GLY
124
A
GLY
35
1
Y
1
A
THR
193
A
THR
104
1
Y
1
A
LYS
194
A
LYS
105
1
Y
1
A
GLY
195
A
GLY
106
1
Y
1
A
GLU
196
A
GLU
107
1
Y
1
A
ASN
197
A
ASN
108
1
Y
1
A
GLN
227
A
GLN
138
1
Y
1
A
ARG
228
A
ARG
139
1
Y
1
A
GLY
229
A
GLY
140
1
Y
1
A
SER
230
A
SER
141
1
Y
1
A
SER
231
A
SER
142
1
Y
1
B
GLY
90
B
GLY
1
1
Y
1
B
GLN
91
B
GLN
2
1
Y
1
B
GLY
92
B
GLY
3
1
Y
1
B
GLY
93
B
GLY
4
1
Y
1
B
GLY
94
B
GLY
5
1
Y
1
B
THR
95
B
THR
6
1
Y
1
B
HIS
96
B
HIS
7
1
Y
1
B
SER
97
B
SER
8
1
Y
1
B
GLN
98
B
GLN
9
1
Y
1
B
TRP
99
B
TRP
10
1
Y
1
B
ASN
100
B
ASN
11
1
Y
1
B
LYS
101
B
LYS
12
1
Y
1
B
PRO
102
B
PRO
13
1
Y
1
B
SER
103
B
SER
14
1
Y
1
B
LYS
104
B
LYS
15
1
Y
1
B
PRO
105
B
PRO
16
1
Y
1
B
LYS
106
B
LYS
17
1
Y
1
B
THR
107
B
THR
18
1
Y
1
B
ASN
108
B
ASN
19
1
Y
1
B
MET
109
B
MET
20
1
Y
1
B
LYS
110
B
LYS
21
1
Y
1
B
HIS
111
B
HIS
22
1
Y
1
B
MET
112
B
MET
23
1
Y
1
B
ALA
113
B
ALA
24
1
Y
1
B
GLY
114
B
GLY
25
1
Y
1
B
ALA
115
B
ALA
26
1
Y
1
B
ALA
116
B
ALA
27
1
Y
1
B
ALA
117
B
ALA
28
1
Y
1
B
ALA
118
B
ALA
29
1
Y
1
B
GLY
119
B
GLY
30
1
Y
1
B
ALA
120
B
ALA
31
1
Y
1
B
VAL
121
B
VAL
32
1
Y
1
B
VAL
122
B
VAL
33
1
Y
1
B
GLY
123
B
GLY
34
1
Y
1
B
GLY
124
B
GLY
35
1
Y
1
B
LEU
125
B
LEU
36
1
Y
1
B
THR
191
B
THR
102
1
Y
1
B
THR
192
B
THR
103
1
Y
1
B
THR
193
B
THR
104
1
Y
1
B
LYS
194
B
LYS
105
1
Y
1
B
GLY
195
B
GLY
106
1
Y
1
B
GLU
196
B
GLU
107
1
Y
1
B
ASN
197
B
ASN
108
1
Y
1
B
ARG
228
B
ARG
139
1
Y
1
B
GLY
229
B
GLY
140
1
Y
1
B
SER
230
B
SER
141
1
Y
1
B
SER
231
B
SER
142
1
Y
1
A
A
OG1
O
THR
HOH
188
358
2.10
1
A
A
OE1
O
GLN
HOH
212
375
2.16
A
1
A
B
NH1
OE1
ARG
GLU
208
211
2.07
A
1_555
5_654
1
A
B
N
OE1
GLY
GLU
142
207
2.08
1_555
5_654
77.88
35.107
17.17
0.000
0.000
0.000
0.000
0.000
0.000
0.940
0.917
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES: REFINED INDIVIDUALLY
0.265
0.226
0.227
1.850
28.810
1217
24056
5.100
98.430
1.00
0.50
2.885
0.090
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.145
0.141
0.800
0.800
1.400
MAXIMUM LIKELIHOOD
MASK
1.850
28.810
138
1794
2
0
1654
0.013
0.021
1701
1.409
1.924
2308
4.902
5.000
200
34.554
23.810
105
15.169
15.000
292
15.931
15.000
15
0.095
0.200
233
0.006
0.021
1361
1.091
1.500
974
2.016
2.000
1594
2.782
3.000
727
4.511
4.500
708
0.304
0.259
1.899
99
1602
1701
20
97.530
1.850
50.000
3HER
24056
0.039
1.028
1
33.439
5.800
91.700
0.447
1.85
1.92
2056
1.102
5.90
86.20
0.293
1.92
1.99
2050
1.064
5.70
86.40
0.186
1.99
2.08
2056
1.077
5.60
86.20
0.135
2.08
2.19
2078
1.057
5.40
86.70
0.098
2.19
2.33
2123
1.040
5.20
87.90
0.083
2.33
2.51
2205
1.006
4.90
91.30
0.071
2.51
2.76
2320
0.959
5.00
95.50
0.049
2.76
3.16
2397
1.017
5.30
97.60
0.030
3.16
3.99
2483
0.914
6.20
99.40
0.025
3.99
50.00
2660
1.052
8.50
98.70
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.5.0066
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.005
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
MOLREP
Human prion protein variant F198S with V129
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
SER
143
A
SER
54
HELX_P
A
MET
154
A
MET
65
1
1
12
A
HIS
155
A
HIS
66
HELX_P
A
TYR
157
A
TYR
68
5
2
3
A
ASN
171
A
ASN
82
HELX_P
A
THR
191
A
THR
102
1
3
21
A
THR
199
A
THR
110
HELX_P
A
GLN
223
A
GLN
134
1
4
25
B
SER
143
B
SER
54
HELX_P
B
MET
154
B
MET
65
1
5
12
B
HIS
155
B
HIS
66
HELX_P
B
TYR
157
B
TYR
68
5
6
3
B
ASN
171
B
ASN
82
HELX_P
B
THR
190
B
THR
101
1
7
20
B
THR
199
B
THR
110
HELX_P
B
GLN
227
B
GLN
138
1
8
29
disulf
2.069
A
CYS
179
A
SG
CYS
90
1_555
A
CYS
214
A
SG
CYS
125
1_555
disulf
2.063
B
CYS
179
B
SG
CYS
90
1_555
B
CYS
214
B
SG
CYS
125
1_555
metalc
2.301
A
HIS
140
A
ND1
HIS
51
1_555
A
CD
300
C
CD
CD
1_555
metalc
2.375
A
ASP
147
A
OD1
ASP
58
1_555
A
CD
300
C
CD
CD
1_555
metalc
2.370
A
ASP
147
A
OD2
ASP
58
1_555
A
CD
300
C
CD
CD
1_555
metalc
2.472
A
CD
300
C
CD
CD
1_555
A
HOH
324
E
O
HOH
1_555
metalc
2.506
A
CD
300
C
CD
CD
1_555
A
HOH
325
E
O
HOH
1_555
metalc
2.033
B
HIS
140
B
ND1
HIS
51
1_555
B
CD
301
D
CD
CD
1_555
metalc
2.582
B
ASP
147
B
OD1
ASP
58
1_555
B
CD
301
D
CD
CD
1_555
metalc
2.519
B
ASP
147
B
OD2
ASP
58
1_555
B
CD
301
D
CD
CD
1_555
metalc
2.620
B
CD
301
D
CD
CD
1_555
B
HOH
438
F
O
HOH
1_555
MEMBRANE PROTEIN
Prion Protein, Cell membrane, Disease mutation, Disulfide bond, Glycoprotein, Golgi apparatus, GPI-anchor, Lipoprotein, Membrane, Polymorphism, Prion, MEMBRANE PROTEIN
PRIO_HUMAN
UNP
1
90
P04156
GQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEY
SNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSS
90
231
3HER
90
231
P04156
A
1
1
142
90
231
3HER
90
231
P04156
B
1
1
142
1
MET
variant
VAL
129
3HER
A
P04156
UNP
129
40
1
PHE
engineered mutation
SER
198
3HER
A
P04156
UNP
198
109
2
MET
variant
VAL
129
3HER
B
P04156
UNP
129
40
2
PHE
engineered mutation
SER
198
3HER
B
P04156
UNP
198
109
2
2
anti-parallel
anti-parallel
A
VAL
129
A
VAL
40
A
LEU
130
A
LEU
41
A
TYR
162
A
TYR
73
A
TYR
163
A
TYR
74
B
VAL
129
B
VAL
40
B
LEU
130
B
LEU
41
B
TYR
162
B
TYR
73
B
TYR
163
B
TYR
74
BINDING SITE FOR RESIDUE CD A 300
A
CD
300
Software
5
BINDING SITE FOR RESIDUE CD B 301
B
CD
301
Software
4
A
HIS
140
A
HIS
51
5
1_555
A
ASP
147
A
ASP
58
5
1_555
A
HOH
324
E
HOH
5
1_555
A
HOH
325
E
HOH
5
1_555
B
HIS
177
B
HIS
88
5
5_654
A
HIS
177
A
HIS
88
4
5_644
B
HIS
140
B
HIS
51
4
1_555
B
ASP
147
B
ASP
58
4
1_555
B
HOH
438
F
HOH
4
1_555
96
P 43 21 2