0.009444 0.000000 0.000000 0.000000 0.009444 0.000000 0.000000 0.000000 0.009444 0.00000 0.00000 0.00000 Datta, A.B. Hura, G.L. Wolberger, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 48 90.00 90.00 90.00 105.882 105.882 105.882 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N O N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 R C N 295 N O N 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N C Y 317 N C N 318 N O N 319 N O N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C N 336 N C N 337 N C N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub N 309 N sing Y 310 N doub N 311 N sing Y 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 392 1117 1124 10.1016/j.jmb.2009.07.090 19664638 The structure and conformation of Lys63-linked tetraubiquitin. 2009 10.2210/pdb3hm3/pdb pdb_00003hm3 100 1 CCD 2008-02-14 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 0.90020 1.0 14-BM-C APS 0.90020 SYNCHROTRON APS BEAMLINE 14-BM-C 8576.831 Ubiquitin 4 man polymer 65.409 ZINC ION 6 syn non-polymer 18.015 water 209 nat water no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG A,B,C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample RPS27A, UBA80, UBCEP1, UBA52, UBCEP2, UBB, UBC 9606 Homo sapiens 562 Escherichia coli BL21(DE3) plasmid pET3a 1 2.88 57.34 VAPOR DIFFUSION, HANGING DROP 4.6 0.1M Sodium acetate, 5% PEG 3000, 50 mM Zinc acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_ncs_dom_lim struct_site repository Initial release Advisory Version format compliance Refinement description Data collection Database references Derived calculations Refinement description 1 0 2009-08-25 1 1 2011-07-13 1 2 2017-11-01 1 3 2023-09-06 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2009-05-28 REL REL ZN ZINC ION HOH water 1UBQ PDB experimental model ZN 600 2 ZN ZN 600 A ZN 700 2 ZN ZN 700 A ZN 400 2 ZN ZN 400 B ZN 100 2 ZN ZN 100 C ZN 200 2 ZN ZN 200 C ZN 900 2 ZN ZN 900 D HOH 77 3 HOH HOH 77 A HOH 2 3 HOH HOH 78 A HOH 3 3 HOH HOH 79 A HOH 11 3 HOH HOH 80 A HOH 14 3 HOH HOH 81 A HOH 82 3 HOH HOH 82 A HOH 16 3 HOH HOH 83 A HOH 84 3 HOH HOH 84 A HOH 20 3 HOH HOH 85 A HOH 21 3 HOH HOH 86 A HOH 87 3 HOH HOH 87 A HOH 22 3 HOH HOH 88 A HOH 26 3 HOH HOH 89 A HOH 28 3 HOH HOH 90 A HOH 29 3 HOH HOH 91 A HOH 92 3 HOH HOH 92 A HOH 93 3 HOH HOH 93 A HOH 33 3 HOH HOH 94 A HOH 38 3 HOH HOH 96 A HOH 41 3 HOH HOH 97 A HOH 98 3 HOH HOH 98 A HOH 45 3 HOH HOH 99 A HOH 48 3 HOH HOH 100 A HOH 52 3 HOH HOH 101 A HOH 53 3 HOH HOH 102 A HOH 55 3 HOH HOH 103 A HOH 63 3 HOH HOH 104 A HOH 68 3 HOH HOH 105 A HOH 106 3 HOH HOH 106 A HOH 71 3 HOH HOH 107 A HOH 72 3 HOH HOH 108 A HOH 74 3 HOH HOH 109 A HOH 112 3 HOH HOH 112 A HOH 114 3 HOH HOH 114 A HOH 115 3 HOH HOH 115 A HOH 120 3 HOH HOH 120 A HOH 126 3 HOH HOH 126 A HOH 129 3 HOH HOH 129 A HOH 136 3 HOH HOH 136 A HOH 138 3 HOH HOH 138 A HOH 144 3 HOH HOH 144 A HOH 146 3 HOH HOH 146 A HOH 155 3 HOH HOH 155 A HOH 162 3 HOH HOH 162 A HOH 175 3 HOH HOH 175 A HOH 177 3 HOH HOH 177 A HOH 181 3 HOH HOH 181 A HOH 191 3 HOH HOH 191 A HOH 195 3 HOH HOH 195 A HOH 200 3 HOH HOH 200 A HOH 4 3 HOH HOH 77 B HOH 5 3 HOH HOH 78 B HOH 9 3 HOH HOH 79 B HOH 19 3 HOH HOH 80 B HOH 81 3 HOH HOH 81 B HOH 30 3 HOH HOH 82 B HOH 83 3 HOH HOH 83 B HOH 34 3 HOH HOH 84 B HOH 37 3 HOH HOH 85 B HOH 86 3 HOH HOH 86 B HOH 40 3 HOH HOH 87 B HOH 49 3 HOH HOH 88 B HOH 50 3 HOH HOH 89 B HOH 54 3 HOH HOH 90 B HOH 59 3 HOH HOH 91 B HOH 62 3 HOH HOH 92 B HOH 66 3 HOH HOH 93 B HOH 76 3 HOH HOH 94 B HOH 95 3 HOH HOH 95 B HOH 100 3 HOH HOH 100 B HOH 103 3 HOH HOH 103 B HOH 107 3 HOH HOH 107 B HOH 111 3 HOH HOH 111 B HOH 119 3 HOH HOH 119 B HOH 123 3 HOH HOH 123 B HOH 134 3 HOH HOH 134 B HOH 135 3 HOH HOH 135 B HOH 140 3 HOH HOH 140 B HOH 147 3 HOH HOH 147 B HOH 151 3 HOH HOH 151 B HOH 152 3 HOH HOH 152 B HOH 157 3 HOH HOH 157 B HOH 159 3 HOH HOH 159 B HOH 160 3 HOH HOH 160 B HOH 161 3 HOH HOH 161 B HOH 164 3 HOH HOH 164 B HOH 165 3 HOH HOH 165 B HOH 168 3 HOH HOH 168 B HOH 169 3 HOH HOH 169 B HOH 171 3 HOH HOH 171 B HOH 172 3 HOH HOH 172 B HOH 179 3 HOH HOH 179 B HOH 182 3 HOH HOH 182 B HOH 186 3 HOH HOH 186 B HOH 187 3 HOH HOH 187 B HOH 194 3 HOH HOH 194 B HOH 197 3 HOH HOH 197 B HOH 205 3 HOH HOH 205 B HOH 7 3 HOH HOH 77 C HOH 78 3 HOH HOH 78 C HOH 79 3 HOH HOH 79 C HOH 80 3 HOH HOH 80 C HOH 10 3 HOH HOH 81 C HOH 13 3 HOH HOH 82 C HOH 15 3 HOH HOH 83 C HOH 17 3 HOH HOH 84 C HOH 85 3 HOH HOH 85 C HOH 18 3 HOH HOH 86 C HOH 27 3 HOH HOH 87 C HOH 88 3 HOH HOH 88 C HOH 31 3 HOH HOH 89 C HOH 39 3 HOH HOH 90 C HOH 91 3 HOH HOH 91 C HOH 47 3 HOH HOH 92 C HOH 60 3 HOH HOH 93 C HOH 94 3 HOH HOH 94 C HOH 61 3 HOH HOH 95 C HOH 96 3 HOH HOH 96 C HOH 97 3 HOH HOH 97 C HOH 64 3 HOH HOH 98 C HOH 99 3 HOH HOH 99 C HOH 65 3 HOH HOH 101 C HOH 102 3 HOH HOH 102 C HOH 67 3 HOH HOH 103 C HOH 70 3 HOH HOH 104 C HOH 75 3 HOH HOH 105 C HOH 108 3 HOH HOH 108 C HOH 109 3 HOH HOH 109 C HOH 110 3 HOH HOH 110 C HOH 117 3 HOH HOH 117 C HOH 118 3 HOH HOH 118 C HOH 121 3 HOH HOH 121 C HOH 124 3 HOH HOH 124 C HOH 130 3 HOH HOH 130 C HOH 131 3 HOH HOH 131 C HOH 132 3 HOH HOH 132 C HOH 133 3 HOH HOH 133 C HOH 139 3 HOH HOH 139 C HOH 143 3 HOH HOH 143 C HOH 145 3 HOH HOH 145 C HOH 154 3 HOH HOH 154 C HOH 156 3 HOH HOH 156 C HOH 158 3 HOH HOH 158 C HOH 167 3 HOH HOH 167 C HOH 174 3 HOH HOH 174 C HOH 178 3 HOH HOH 178 C HOH 183 3 HOH HOH 183 C HOH 184 3 HOH HOH 184 C HOH 185 3 HOH HOH 185 C HOH 189 3 HOH HOH 189 C HOH 190 3 HOH HOH 190 C HOH 192 3 HOH HOH 192 C HOH 196 3 HOH HOH 196 C HOH 198 3 HOH HOH 198 C HOH 201 3 HOH HOH 201 C HOH 202 3 HOH HOH 202 C HOH 204 3 HOH HOH 204 C HOH 206 3 HOH HOH 206 C HOH 207 3 HOH HOH 207 C HOH 208 3 HOH HOH 208 C HOH 1 3 HOH HOH 77 D HOH 6 3 HOH HOH 78 D HOH 8 3 HOH HOH 79 D HOH 12 3 HOH HOH 80 D HOH 23 3 HOH HOH 81 D HOH 24 3 HOH HOH 82 D HOH 25 3 HOH HOH 83 D HOH 32 3 HOH HOH 84 D HOH 35 3 HOH HOH 85 D HOH 42 3 HOH HOH 86 D HOH 43 3 HOH HOH 87 D HOH 44 3 HOH HOH 88 D HOH 89 3 HOH HOH 89 D HOH 90 3 HOH HOH 90 D HOH 46 3 HOH HOH 91 D HOH 51 3 HOH HOH 92 D HOH 56 3 HOH HOH 93 D HOH 57 3 HOH HOH 94 D HOH 36 3 HOH HOH 95 D HOH 69 3 HOH HOH 96 D HOH 73 3 HOH HOH 97 D HOH 58 3 HOH HOH 98 D HOH 101 3 HOH HOH 101 D HOH 104 3 HOH HOH 104 D HOH 105 3 HOH HOH 105 D HOH 113 3 HOH HOH 113 D HOH 116 3 HOH HOH 116 D HOH 122 3 HOH HOH 122 D HOH 125 3 HOH HOH 125 D HOH 127 3 HOH HOH 127 D HOH 128 3 HOH HOH 128 D HOH 137 3 HOH HOH 137 D HOH 141 3 HOH HOH 141 D HOH 142 3 HOH HOH 142 D HOH 148 3 HOH HOH 148 D HOH 149 3 HOH HOH 149 D HOH 150 3 HOH HOH 150 D HOH 153 3 HOH HOH 153 D HOH 163 3 HOH HOH 163 D HOH 166 3 HOH HOH 166 D HOH 170 3 HOH HOH 170 D HOH 173 3 HOH HOH 173 D HOH 176 3 HOH HOH 176 D HOH 180 3 HOH HOH 180 D HOH 188 3 HOH HOH 188 D HOH 193 3 HOH HOH 193 D HOH 199 3 HOH HOH 199 D HOH 203 3 HOH HOH 203 D HOH 209 3 HOH HOH 209 D MET 1 n 1 MET 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A PHE 4 n 4 PHE 4 A VAL 5 n 5 VAL 5 A LYS 6 n 6 LYS 6 A THR 7 n 7 THR 7 A LEU 8 n 8 LEU 8 A THR 9 n 9 THR 9 A GLY 10 n 10 GLY 10 A LYS 11 n 11 LYS 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A THR 14 n 14 THR 14 A LEU 15 n 15 LEU 15 A GLU 16 n 16 GLU 16 A VAL 17 n 17 VAL 17 A GLU 18 n 18 GLU 18 A PRO 19 n 19 PRO 19 A SER 20 n 20 SER 20 A ASP 21 n 21 ASP 21 A THR 22 n 22 THR 22 A ILE 23 n 23 ILE 23 A GLU 24 n 24 GLU 24 A ASN 25 n 25 ASN 25 A VAL 26 n 26 VAL 26 A LYS 27 n 27 LYS 27 A ALA 28 n 28 ALA 28 A LYS 29 n 29 LYS 29 A ILE 30 n 30 ILE 30 A GLN 31 n 31 GLN 31 A ASP 32 n 32 ASP 32 A LYS 33 n 33 LYS 33 A GLU 34 n 34 GLU 34 A GLY 35 n 35 GLY 35 A ILE 36 n 36 ILE 36 A PRO 37 n 37 PRO 37 A PRO 38 n 38 PRO 38 A ASP 39 n 39 ASP 39 A GLN 40 n 40 GLN 40 A GLN 41 n 41 GLN 41 A ARG 42 n 42 ARG 42 A LEU 43 n 43 LEU 43 A ILE 44 n 44 ILE 44 A PHE 45 n 45 PHE 45 A ALA 46 n 46 ALA 46 A GLY 47 n 47 GLY 47 A LYS 48 n 48 LYS 48 A GLN 49 n 49 GLN 49 A LEU 50 n 50 LEU 50 A GLU 51 n 51 GLU 51 A ASP 52 n 52 ASP 52 A GLY 53 n 53 GLY 53 A ARG 54 n 54 ARG 54 A THR 55 n 55 THR 55 A LEU 56 n 56 LEU 56 A SER 57 n 57 SER 57 A ASP 58 n 58 ASP 58 A TYR 59 n 59 TYR 59 A ASN 60 n 60 ASN 60 A ILE 61 n 61 ILE 61 A GLN 62 n 62 GLN 62 A LYS 63 n 63 LYS 63 A GLU 64 n 64 GLU 64 A SER 65 n 65 SER 65 A THR 66 n 66 THR 66 A LEU 67 n 67 LEU 67 A HIS 68 n 68 HIS 68 A LEU 69 n 69 LEU 69 A VAL 70 n 70 VAL 70 A LEU 71 n 71 LEU 71 A ARG 72 n 72 ARG 72 A LEU 73 n 73 LEU 73 A ARG 74 n 74 ARG 74 A GLY 75 n 75 GLY 75 A GLY 76 n 76 GLY 76 A MET 1 n 1 MET 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B PHE 4 n 4 PHE 4 B VAL 5 n 5 VAL 5 B LYS 6 n 6 LYS 6 B THR 7 n 7 THR 7 B LEU 8 n 8 LEU 8 B THR 9 n 9 THR 9 B GLY 10 n 10 GLY 10 B LYS 11 n 11 LYS 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B THR 14 n 14 THR 14 B LEU 15 n 15 LEU 15 B GLU 16 n 16 GLU 16 B VAL 17 n 17 VAL 17 B GLU 18 n 18 GLU 18 B PRO 19 n 19 PRO 19 B SER 20 n 20 SER 20 B ASP 21 n 21 ASP 21 B THR 22 n 22 THR 22 B ILE 23 n 23 ILE 23 B GLU 24 n 24 GLU 24 B ASN 25 n 25 ASN 25 B VAL 26 n 26 VAL 26 B LYS 27 n 27 LYS 27 B ALA 28 n 28 ALA 28 B LYS 29 n 29 LYS 29 B ILE 30 n 30 ILE 30 B GLN 31 n 31 GLN 31 B ASP 32 n 32 ASP 32 B LYS 33 n 33 LYS 33 B GLU 34 n 34 GLU 34 B GLY 35 n 35 GLY 35 B ILE 36 n 36 ILE 36 B PRO 37 n 37 PRO 37 B PRO 38 n 38 PRO 38 B ASP 39 n 39 ASP 39 B GLN 40 n 40 GLN 40 B GLN 41 n 41 GLN 41 B ARG 42 n 42 ARG 42 B LEU 43 n 43 LEU 43 B ILE 44 n 44 ILE 44 B PHE 45 n 45 PHE 45 B ALA 46 n 46 ALA 46 B GLY 47 n 47 GLY 47 B LYS 48 n 48 LYS 48 B GLN 49 n 49 GLN 49 B LEU 50 n 50 LEU 50 B GLU 51 n 51 GLU 51 B ASP 52 n 52 ASP 52 B GLY 53 n 53 GLY 53 B ARG 54 n 54 ARG 54 B THR 55 n 55 THR 55 B LEU 56 n 56 LEU 56 B SER 57 n 57 SER 57 B ASP 58 n 58 ASP 58 B TYR 59 n 59 TYR 59 B ASN 60 n 60 ASN 60 B ILE 61 n 61 ILE 61 B GLN 62 n 62 GLN 62 B LYS 63 n 63 LYS 63 B GLU 64 n 64 GLU 64 B SER 65 n 65 SER 65 B THR 66 n 66 THR 66 B LEU 67 n 67 LEU 67 B HIS 68 n 68 HIS 68 B LEU 69 n 69 LEU 69 B VAL 70 n 70 VAL 70 B LEU 71 n 71 LEU 71 B ARG 72 n 72 ARG 72 B LEU 73 n 73 LEU 73 B ARG 74 n 74 ARG 74 B GLY 75 n 75 GLY 75 B GLY 76 n 76 GLY 76 B MET 1 n 1 MET 1 C GLN 2 n 2 GLN 2 C ILE 3 n 3 ILE 3 C PHE 4 n 4 PHE 4 C VAL 5 n 5 VAL 5 C LYS 6 n 6 LYS 6 C THR 7 n 7 THR 7 C LEU 8 n 8 LEU 8 C THR 9 n 9 THR 9 C GLY 10 n 10 GLY 10 C LYS 11 n 11 LYS 11 C THR 12 n 12 THR 12 C ILE 13 n 13 ILE 13 C THR 14 n 14 THR 14 C LEU 15 n 15 LEU 15 C GLU 16 n 16 GLU 16 C VAL 17 n 17 VAL 17 C GLU 18 n 18 GLU 18 C PRO 19 n 19 PRO 19 C SER 20 n 20 SER 20 C ASP 21 n 21 ASP 21 C THR 22 n 22 THR 22 C ILE 23 n 23 ILE 23 C GLU 24 n 24 GLU 24 C ASN 25 n 25 ASN 25 C VAL 26 n 26 VAL 26 C LYS 27 n 27 LYS 27 C ALA 28 n 28 ALA 28 C LYS 29 n 29 LYS 29 C ILE 30 n 30 ILE 30 C GLN 31 n 31 GLN 31 C ASP 32 n 32 ASP 32 C LYS 33 n 33 LYS 33 C GLU 34 n 34 GLU 34 C GLY 35 n 35 GLY 35 C ILE 36 n 36 ILE 36 C PRO 37 n 37 PRO 37 C PRO 38 n 38 PRO 38 C ASP 39 n 39 ASP 39 C GLN 40 n 40 GLN 40 C GLN 41 n 41 GLN 41 C ARG 42 n 42 ARG 42 C LEU 43 n 43 LEU 43 C ILE 44 n 44 ILE 44 C PHE 45 n 45 PHE 45 C ALA 46 n 46 ALA 46 C GLY 47 n 47 GLY 47 C LYS 48 n 48 LYS 48 C GLN 49 n 49 GLN 49 C LEU 50 n 50 LEU 50 C GLU 51 n 51 GLU 51 C ASP 52 n 52 ASP 52 C GLY 53 n 53 GLY 53 C ARG 54 n 54 ARG 54 C THR 55 n 55 THR 55 C LEU 56 n 56 LEU 56 C SER 57 n 57 SER 57 C ASP 58 n 58 ASP 58 C TYR 59 n 59 TYR 59 C ASN 60 n 60 ASN 60 C ILE 61 n 61 ILE 61 C GLN 62 n 62 GLN 62 C LYS 63 n 63 LYS 63 C GLU 64 n 64 GLU 64 C SER 65 n 65 SER 65 C THR 66 n 66 THR 66 C LEU 67 n 67 LEU 67 C HIS 68 n 68 HIS 68 C LEU 69 n 69 LEU 69 C VAL 70 n 70 VAL 70 C LEU 71 n 71 LEU 71 C ARG 72 n 72 ARG 72 C LEU 73 n 73 LEU 73 C ARG 74 n 74 ARG 74 C GLY 75 n 75 GLY 75 C GLY 76 n 76 GLY 76 C MET 1 n 1 MET 1 D GLN 2 n 2 GLN 2 D ILE 3 n 3 ILE 3 D PHE 4 n 4 PHE 4 D VAL 5 n 5 VAL 5 D LYS 6 n 6 LYS 6 D THR 7 n 7 THR 7 D LEU 8 n 8 LEU 8 D THR 9 n 9 THR 9 D GLY 10 n 10 GLY 10 D LYS 11 n 11 LYS 11 D THR 12 n 12 THR 12 D ILE 13 n 13 ILE 13 D THR 14 n 14 THR 14 D LEU 15 n 15 LEU 15 D GLU 16 n 16 GLU 16 D VAL 17 n 17 VAL 17 D GLU 18 n 18 GLU 18 D PRO 19 n 19 PRO 19 D SER 20 n 20 SER 20 D ASP 21 n 21 ASP 21 D THR 22 n 22 THR 22 D ILE 23 n 23 ILE 23 D GLU 24 n 24 GLU 24 D ASN 25 n 25 ASN 25 D VAL 26 n 26 VAL 26 D LYS 27 n 27 LYS 27 D ALA 28 n 28 ALA 28 D LYS 29 n 29 LYS 29 D ILE 30 n 30 ILE 30 D GLN 31 n 31 GLN 31 D ASP 32 n 32 ASP 32 D LYS 33 n 33 LYS 33 D GLU 34 n 34 GLU 34 D GLY 35 n 35 GLY 35 D ILE 36 n 36 ILE 36 D PRO 37 n 37 PRO 37 D PRO 38 n 38 PRO 38 D ASP 39 n 39 ASP 39 D GLN 40 n 40 GLN 40 D GLN 41 n 41 GLN 41 D ARG 42 n 42 ARG 42 D LEU 43 n 43 LEU 43 D ILE 44 n 44 ILE 44 D PHE 45 n 45 PHE 45 D ALA 46 n 46 ALA 46 D GLY 47 n 47 GLY 47 D LYS 48 n 48 LYS 48 D GLN 49 n 49 GLN 49 D LEU 50 n 50 LEU 50 D GLU 51 n 51 GLU 51 D ASP 52 n 52 ASP 52 D GLY 53 n 53 GLY 53 D ARG 54 n 54 ARG 54 D THR 55 n 55 THR 55 D LEU 56 n 56 LEU 56 D SER 57 n 57 SER 57 D ASP 58 n 58 ASP 58 D TYR 59 n 59 TYR 59 D ASN 60 n 60 ASN 60 D ILE 61 n 61 ILE 61 D GLN 62 n 62 GLN 62 D LYS 63 n 63 LYS 63 D GLU 64 n 64 GLU 64 D SER 65 n 65 SER 65 D THR 66 n 66 THR 66 D LEU 67 n 67 LEU 67 D HIS 68 n 68 HIS 68 D LEU 69 n 69 LEU 69 D VAL 70 n 70 VAL 70 D LEU 71 n 71 LEU 71 D ARG 72 n 72 ARG 72 D LEU 73 n 73 LEU 73 D ARG 74 n 74 ARG 74 D GLY 75 n 75 GLY 75 D GLY 76 n 76 GLY 76 D 6.1851 0.6200 -1.8968 5.8836 2.0694 5.6652 -0.0973 -0.1811 0.0178 -0.3919 0.2617 -0.4503 -0.0799 0.4082 -0.1643 -0.2142 -0.0146 0.0788 -0.2154 -0.0333 -0.2328 refined 65.1500 104.4568 -8.3844 X-RAY DIFFRACTION 27.6342 7.3592 -9.2130 48.4461 25.0188 19.3070 -1.3682 -0.9066 1.9022 -0.2988 1.1423 -0.1690 -1.6609 -0.4303 0.2259 0.0815 -0.0665 -0.1197 0.1347 0.0276 0.2421 refined 76.9964 117.1411 -9.8929 X-RAY DIFFRACTION 7.1760 1.7969 -0.3084 5.7935 0.7757 5.1232 -0.0634 -0.1437 -0.3734 0.0004 0.1009 -0.1934 0.0132 0.0464 -0.0376 -0.1878 -0.0413 -0.0083 -0.2153 0.0254 -0.1530 refined 50.0589 67.2469 -6.4630 X-RAY DIFFRACTION 20.7855 16.1192 14.8239 45.4594 44.4604 51.4500 -0.0080 -2.0767 1.3891 1.1012 -0.0612 0.0225 -0.2767 -0.1117 0.0693 0.0270 0.0371 -0.0115 0.0648 -0.1269 0.1308 refined 57.3004 81.6387 -2.3323 X-RAY DIFFRACTION 6.2150 0.3551 -1.9972 6.3373 1.8680 5.6054 0.2665 -0.3776 0.4538 -0.1651 -0.1031 -0.0359 -0.4077 0.0916 -0.1634 -0.2144 -0.0186 0.0359 -0.2217 -0.0774 -0.2313 refined 25.0448 38.6747 -18.0808 X-RAY DIFFRACTION 51.2139 -7.1171 -41.3215 77.5137 -0.4831 33.8464 0.8493 0.4514 1.4319 -0.7496 -0.1701 -2.1042 0.4010 0.3431 -0.6792 0.1552 -0.1068 0.0178 0.1474 0.1525 0.2006 refined 37.7342 50.3819 -16.8016 X-RAY DIFFRACTION 5.7288 1.7079 -0.8420 7.3063 0.3592 4.6049 0.0837 -0.0202 0.2287 -0.0975 -0.1042 0.3715 -0.0786 -0.0458 0.0206 -0.2020 -0.0395 -0.0231 -0.1833 0.0081 -0.1565 refined -12.1553 23.5689 -20.0081 X-RAY DIFFRACTION 51.5448 9.3552 -39.5690 23.4364 -17.5284 35.3004 0.6665 0.8905 0.3696 -2.3046 -0.4790 -0.9800 0.3947 0.0543 -0.1876 0.1141 -0.0212 0.1797 0.0058 -0.0631 0.1272 refined 2.3104 30.7882 -23.9149 X-RAY DIFFRACTION A 1 A 62 X-RAY DIFFRACTION 1 A 64 A 70 X-RAY DIFFRACTION 1 A 71 A 76 X-RAY DIFFRACTION 2 B 1 B 62 X-RAY DIFFRACTION 3 B 64 B 70 X-RAY DIFFRACTION 3 B 71 B 76 X-RAY DIFFRACTION 4 C 1 C 62 X-RAY DIFFRACTION 5 C 64 C 70 X-RAY DIFFRACTION 5 C 71 C 76 X-RAY DIFFRACTION 6 D 1 D 62 X-RAY DIFFRACTION 7 D 64 D 70 X-RAY DIFFRACTION 7 D 71 D 76 X-RAY DIFFRACTION 8 software_defined_assembly PISA 1 monomeric software_defined_assembly PISA 1 monomeric software_defined_assembly PISA 1 monomeric software_defined_assembly PISA 1 monomeric A ASP 21 A OD2 ASP 21 1_555 A ZN 700 A F ZN ZN 1_555 A HOH 88 K O HOH 1_555 125.1 C ASP 21 C OD2 ASP 21 1_555 C ZN 200 A I ZN ZN 1_555 C HOH 85 M O HOH 1_555 135.5 D ASP 21 D OD1 ASP 21 1_555 D ZN 900 B J ZN ZN 1_555 D HOH 89 N O HOH 1_555 124.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 13 A O ILE 13 A N VAL 5 A N VAL 5 A N LYS 6 A N LYS 6 A O LEU 69 A O LEU 69 A O VAL 70 A O VAL 70 A N ARG 42 A N ARG 42 A N PHE 45 A N PHE 45 A O LYS 48 A O LYS 48 B O LEU 15 B O LEU 15 B N ILE 3 B N ILE 3 B N PHE 4 B N PHE 4 B O LEU 67 B O LEU 67 B O HIS 68 B O HIS 68 B N ILE 44 B N ILE 44 B N PHE 45 B N PHE 45 B O LYS 48 B O LYS 48 C O ILE 13 C O ILE 13 C N VAL 5 C N VAL 5 C N LYS 6 C N LYS 6 C O LEU 69 C O LEU 69 C O VAL 70 C O VAL 70 C N ARG 42 C N ARG 42 C N PHE 45 C N PHE 45 C O LYS 48 C O LYS 48 D O LEU 15 D O LEU 15 D N ILE 3 D N ILE 3 D N PHE 4 D N PHE 4 D O LEU 67 D O LEU 67 D O VAL 70 D O VAL 70 D N ARG 42 D N ARG 42 D N PHE 45 D N PHE 45 D O LYS 48 D O LYS 48 1 3.34 0.50 120.30 123.64 B B B NE CZ NH1 ARG ARG ARG 42 42 42 B B B N 1 A A N CA MET MET 1 1 0.177 0.020 1.459 1.636 N 1 A A C O GLY GLY 76 76 0.148 0.016 1.232 1.380 N 1 B B CD OE2 GLU GLU 18 18 0.068 0.011 1.252 1.320 N 1 C C N CA MET MET 1 1 0.211 0.020 1.459 1.670 N 1 C LEU 73 -39.02 111.12 42.133 0.966 0.946 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.23611 0.18569 0.18820 1.96 25.68 1448 27141 5.1 99.58 1.00 0.00 7.252 0.111 RANDOM LIKELY RESIDUAL 1 THROUGHOUT MOLECULAR REPLACEMENT 0.153 0.150 0.80 0.80 1.20 1UBQ MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.96 25.68 209 2619 6 0 2404 0.023 0.022 2580 0.002 0.020 1806 1.885 1.994 3491 1.008 3.000 4471 6.573 5.000 330 38.892 25.254 118 16.208 15.000 410 19.941 15.000 20 0.128 0.200 403 0.009 0.020 2789 0.003 0.020 433 0.246 0.200 527 0.206 0.200 1904 0.175 0.200 1291 0.089 0.200 1508 0.211 0.200 175 0.103 0.200 2 0.195 0.200 6 0.378 0.200 65 0.291 0.200 117 0.238 0.200 37 0.046 0.200 3 1.271 1.500 2025 0.348 1.500 615 1.634 2.000 2617 2.923 3.000 1039 4.225 4.500 873 1 B 1 383 X-RAY DIFFRACTION tight positional 0.02 0.05 1 A 2 383 X-RAY DIFFRACTION tight positional 0.02 0.05 1 B 1 509 X-RAY DIFFRACTION medium positional 0.73 0.50 1 A 2 486 X-RAY DIFFRACTION medium positional 0.26 0.50 1 A 3 189 X-RAY DIFFRACTION medium positional 0.10 0.50 2 B 3 189 X-RAY DIFFRACTION medium positional 0.10 0.50 3 C 3 189 X-RAY DIFFRACTION medium positional 0.11 0.50 4 D 3 189 X-RAY DIFFRACTION medium positional 0.11 0.50 1 A 3 233 X-RAY DIFFRACTION loose positional 0.42 5.00 2 B 3 233 X-RAY DIFFRACTION loose positional 0.54 5.00 3 C 3 233 X-RAY DIFFRACTION loose positional 0.45 5.00 4 D 3 233 X-RAY DIFFRACTION loose positional 0.75 5.00 1 B 1 383 X-RAY DIFFRACTION tight thermal 0.12 0.50 1 A 2 383 X-RAY DIFFRACTION tight thermal 0.13 0.50 1 B 1 509 X-RAY DIFFRACTION medium thermal 0.56 2.00 1 A 2 486 X-RAY DIFFRACTION medium thermal 0.42 2.00 1 A 3 189 X-RAY DIFFRACTION medium thermal 0.61 2.00 2 B 3 189 X-RAY DIFFRACTION medium thermal 0.63 2.00 3 C 3 189 X-RAY DIFFRACTION medium thermal 0.63 2.00 4 D 3 189 X-RAY DIFFRACTION medium thermal 0.60 2.00 1 A 3 233 X-RAY DIFFRACTION loose thermal 1.38 10.00 2 B 3 233 X-RAY DIFFRACTION loose thermal 1.51 10.00 3 C 3 233 X-RAY DIFFRACTION loose thermal 1.41 10.00 4 D 3 233 X-RAY DIFFRACTION loose thermal 1.31 10.00 0.290 0.201 2.010 101 1986 20 100.00 1.960 25.68 3HM3 28616 0.081 1 54.367 42.900 99.600 0.902 1.96 2.01 1 43.10 100.00 0.702 2.01 2.06 1 43.30 100.00 0.548 2.06 2.11 1 43.40 100.00 0.434 2.11 2.17 1 43.50 100.00 0.344 2.17 2.24 1 43.60 100.00 0.286 2.24 2.32 1 43.60 100.00 0.222 2.32 2.42 1 43.70 100.00 0.180 2.42 2.53 1 43.70 100.00 0.152 2.53 2.66 1 43.70 100.00 0.123 2.66 2.83 1 43.60 100.00 0.103 2.83 3.04 1 43.50 100.00 0.092 3.04 3.35 1 43.20 100.00 0.081 3.35 3.84 1 42.70 100.00 0.061 3.84 4.83 1 40.40 99.90 0.046 4.83 50.00 1 38.60 94.30 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.2.0019 data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.005 data scaling HKL-2000 The Structure and conformation of Lys-63 linked tetra-ubiquitin 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N A THR 22 A THR 22 HELX_P A GLY 35 A GLY 35 1 1 14 A PRO 37 A PRO 37 HELX_P A ASP 39 A ASP 39 5 2 3 B THR 22 B THR 22 HELX_P B GLY 35 B GLY 35 1 3 14 B PRO 37 B PRO 37 HELX_P B ASP 39 B ASP 39 5 4 3 B LEU 56 B LEU 56 HELX_P B ASN 60 B ASN 60 5 5 5 C THR 22 C THR 22 HELX_P C GLY 35 C GLY 35 1 6 14 C PRO 37 C PRO 37 HELX_P C ASP 39 C ASP 39 5 7 3 D THR 22 D THR 22 HELX_P D GLY 35 D GLY 35 1 8 14 D PRO 37 D PRO 37 HELX_P D ASP 39 D ASP 39 5 9 3 D LEU 56 D LEU 56 HELX_P D ASN 60 D ASN 60 5 10 5 covale 1.331 one A LYS 63 A NZ LYS 63 1_555 B GLY 76 B C GLY 76 1_555 covale 1.342 one B LYS 63 B NZ LYS 63 1_555 C GLY 76 C C GLY 76 1_555 covale 1.330 one C LYS 63 C NZ LYS 63 1_555 D GLY 76 D C GLY 76 1_555 metalc 2.042 A A ASP 21 A OD2 ASP 21 1_555 A ZN 700 F ZN ZN 1_555 metalc 2.109 B A GLU 64 A OE1 GLU 64 1_555 A ZN 600 E ZN ZN 1_555 metalc 1.823 A A GLU 64 A OE2 GLU 64 1_555 A ZN 600 E ZN ZN 1_555 metalc 1.893 A A HOH 88 K O HOH 1_555 A ZN 700 F ZN ZN 1_555 metalc 1.962 B B ASP 21 B OD1 ASP 21 1_555 B ZN 400 G ZN ZN 1_555 metalc 2.222 A B HOH 91 L O HOH 1_555 B ZN 400 G ZN ZN 1_555 metalc 2.098 A C ASP 21 C OD2 ASP 21 1_555 C ZN 200 I ZN ZN 1_555 metalc 2.081 B C ASP 21 C OD2 ASP 21 1_555 C ZN 200 I ZN ZN 1_555 metalc 2.040 B C GLU 64 C OE1 GLU 64 1_555 C ZN 100 H ZN ZN 1_555 metalc 1.850 A C HOH 85 M O HOH 1_555 C ZN 200 I ZN ZN 1_555 metalc 2.069 B D ASP 21 D OD1 ASP 21 1_555 D ZN 900 J ZN ZN 1_555 metalc 1.774 B D HOH 89 N O HOH 1_555 D ZN 900 J ZN ZN 1_555 SIGNALING PROTEIN Ubiquitin chain, Lys63-linked, tetrameric ubiquitin, Isopeptide bond, Nucleus, Phosphoprotein, SIGNALING PROTEIN B D A C A B C D B PHE 4 B PHE 4 B ASN 60 B ASN 60 2 D PHE 4 D PHE 4 D ASN 60 D ASN 60 2 B SER 65 B SER 65 B ARG 72 B ARG 72 2 D SER 65 D SER 65 D ARG 72 D ARG 72 2 A PHE 4 A PHE 4 A ASN 60 A ASN 60 2 C PHE 4 C PHE 4 C ASN 60 C ASN 60 2 A SER 65 A SER 65 A ARG 72 A ARG 72 2 C SER 65 C SER 65 C ARG 72 C ARG 72 2 A LEU 15 A LEU 15 A LYS 27 A LYS 27 5 B LEU 15 B LEU 15 B LYS 27 B LYS 27 5 C LEU 15 C LEU 15 C LYS 27 C LYS 27 5 D LEU 15 D LEU 15 D LYS 27 D LYS 27 5 A GLN 40 A GLN 40 A PHE 45 A PHE 45 5 B GLN 40 B GLN 40 B PHE 45 B PHE 45 5 C GLN 40 C GLN 40 C PHE 45 C PHE 45 5 D GLN 40 D GLN 40 D PHE 45 D PHE 45 5 A LEU 50 A LEU 50 A ILE 61 A ILE 61 5 B LEU 50 B LEU 50 B ILE 61 B ILE 61 5 C LEU 50 C LEU 50 C ILE 61 C ILE 61 5 D LEU 50 D LEU 50 D ILE 61 D ILE 61 5 A THR 66 A THR 66 A LEU 69 A LEU 69 5 B THR 66 B THR 66 B LEU 69 B LEU 69 5 C THR 66 C THR 66 C LEU 69 C LEU 69 5 D THR 66 D THR 66 D LEU 69 D LEU 69 5 UBIQ_HUMAN UNP 1 1 P62988 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 76 3HM3 1 76 P62988 A 1 1 76 1 76 3HM3 1 76 P62988 B 1 1 76 1 76 3HM3 1 76 P62988 C 1 1 76 1 76 3HM3 1 76 P62988 D 1 1 76 5 5 5 5 anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A THR 12 A THR 12 A GLU 16 A GLU 16 A GLN 2 A GLN 2 A THR 7 A THR 7 A THR 66 A THR 66 A LEU 71 A LEU 71 A GLN 41 A GLN 41 A PHE 45 A PHE 45 A LYS 48 A LYS 48 A GLN 49 A GLN 49 B THR 12 B THR 12 B GLU 16 B GLU 16 B GLN 2 B GLN 2 B LYS 6 B LYS 6 B THR 66 B THR 66 B LEU 71 B LEU 71 B GLN 41 B GLN 41 B PHE 45 B PHE 45 B LYS 48 B LYS 48 B GLN 49 B GLN 49 C THR 12 C THR 12 C GLU 16 C GLU 16 C GLN 2 C GLN 2 C THR 7 C THR 7 C THR 66 C THR 66 C LEU 71 C LEU 71 C GLN 41 C GLN 41 C PHE 45 C PHE 45 C LYS 48 C LYS 48 C GLN 49 C GLN 49 D THR 12 D THR 12 D GLU 16 D GLU 16 D GLN 2 D GLN 2 D LYS 6 D LYS 6 D THR 66 D THR 66 D LEU 71 D LEU 71 D GLN 41 D GLN 41 D PHE 45 D PHE 45 D LYS 48 D LYS 48 D GLN 49 D GLN 49 BINDING SITE FOR RESIDUE ZN A 600 A ZN 600 Software 3 BINDING SITE FOR RESIDUE ZN A 700 A ZN 700 Software 4 BINDING SITE FOR RESIDUE ZN B 400 B ZN 400 Software 5 BINDING SITE FOR RESIDUE ZN C 100 C ZN 100 Software 3 BINDING SITE FOR RESIDUE ZN C 200 C ZN 200 Software 4 BINDING SITE FOR RESIDUE ZN D 900 D ZN 900 Software 4 A GLU 64 A GLU 64 3 1_555 C HIS 68 C HIS 68 3 7_564 C HOH 121 M HOH 3 7_564 A GLU 18 A GLU 18 4 12_664 A GLU 18 A GLU 18 4 1_555 A ASP 21 A ASP 21 4 1_555 A HOH 88 K HOH 4 1_555 B GLU 18 B GLU 18 5 7_564 B ASP 21 B ASP 21 5 1_555 B ASN 25 B ASN 25 5 1_555 B LYS 29 B LYS 29 5 1_555 B HOH 91 L HOH 5 1_555 A HIS 68 A HIS 68 3 10_655 A HOH 92 K HOH 3 10_655 C GLU 64 C GLU 64 3 1_555 C GLU 18 C GLU 18 4 6_555 C ASP 21 C ASP 21 4 1_555 C LYS 29 C LYS 29 4 1_555 C HOH 85 M HOH 4 1_555 D GLU 18 D GLU 18 4 1_555 D GLU 18 D GLU 18 4 10_554 D ASP 21 D ASP 21 4 1_555 D HOH 89 N HOH 4 1_555 198 P 21 3