0.009444
0.000000
0.000000
0.000000
0.009444
0.000000
0.000000
0.000000
0.009444
0.00000
0.00000
0.00000
Datta, A.B.
Hura, G.L.
Wolberger, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
48
90.00
90.00
90.00
105.882
105.882
105.882
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
N
318
N
O
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
392
1117
1124
10.1016/j.jmb.2009.07.090
19664638
The structure and conformation of Lys63-linked tetraubiquitin.
2009
10.2210/pdb3hm3/pdb
pdb_00003hm3
100
1
CCD
2008-02-14
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.90020
1.0
14-BM-C
APS
0.90020
SYNCHROTRON
APS BEAMLINE 14-BM-C
8576.831
Ubiquitin
4
man
polymer
65.409
ZINC ION
6
syn
non-polymer
18.015
water
209
nat
water
no
no
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
A,B,C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
RPS27A, UBA80, UBCEP1, UBA52, UBCEP2, UBB, UBC
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)
plasmid
pET3a
1
2.88
57.34
VAPOR DIFFUSION, HANGING DROP
4.6
0.1M Sodium acetate, 5% PEG 3000, 50 mM Zinc acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ncs_dom_lim
struct_site
repository
Initial release
Advisory
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2009-08-25
1
1
2011-07-13
1
2
2017-11-01
1
3
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.beg_label_asym_id
_struct_ncs_dom_lim.beg_label_comp_id
_struct_ncs_dom_lim.beg_label_seq_id
_struct_ncs_dom_lim.end_auth_comp_id
_struct_ncs_dom_lim.end_label_asym_id
_struct_ncs_dom_lim.end_label_comp_id
_struct_ncs_dom_lim.end_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2009-05-28
REL
REL
ZN
ZINC ION
HOH
water
1UBQ
PDB
experimental model
ZN
600
2
ZN
ZN
600
A
ZN
700
2
ZN
ZN
700
A
ZN
400
2
ZN
ZN
400
B
ZN
100
2
ZN
ZN
100
C
ZN
200
2
ZN
ZN
200
C
ZN
900
2
ZN
ZN
900
D
HOH
77
3
HOH
HOH
77
A
HOH
2
3
HOH
HOH
78
A
HOH
3
3
HOH
HOH
79
A
HOH
11
3
HOH
HOH
80
A
HOH
14
3
HOH
HOH
81
A
HOH
82
3
HOH
HOH
82
A
HOH
16
3
HOH
HOH
83
A
HOH
84
3
HOH
HOH
84
A
HOH
20
3
HOH
HOH
85
A
HOH
21
3
HOH
HOH
86
A
HOH
87
3
HOH
HOH
87
A
HOH
22
3
HOH
HOH
88
A
HOH
26
3
HOH
HOH
89
A
HOH
28
3
HOH
HOH
90
A
HOH
29
3
HOH
HOH
91
A
HOH
92
3
HOH
HOH
92
A
HOH
93
3
HOH
HOH
93
A
HOH
33
3
HOH
HOH
94
A
HOH
38
3
HOH
HOH
96
A
HOH
41
3
HOH
HOH
97
A
HOH
98
3
HOH
HOH
98
A
HOH
45
3
HOH
HOH
99
A
HOH
48
3
HOH
HOH
100
A
HOH
52
3
HOH
HOH
101
A
HOH
53
3
HOH
HOH
102
A
HOH
55
3
HOH
HOH
103
A
HOH
63
3
HOH
HOH
104
A
HOH
68
3
HOH
HOH
105
A
HOH
106
3
HOH
HOH
106
A
HOH
71
3
HOH
HOH
107
A
HOH
72
3
HOH
HOH
108
A
HOH
74
3
HOH
HOH
109
A
HOH
112
3
HOH
HOH
112
A
HOH
114
3
HOH
HOH
114
A
HOH
115
3
HOH
HOH
115
A
HOH
120
3
HOH
HOH
120
A
HOH
126
3
HOH
HOH
126
A
HOH
129
3
HOH
HOH
129
A
HOH
136
3
HOH
HOH
136
A
HOH
138
3
HOH
HOH
138
A
HOH
144
3
HOH
HOH
144
A
HOH
146
3
HOH
HOH
146
A
HOH
155
3
HOH
HOH
155
A
HOH
162
3
HOH
HOH
162
A
HOH
175
3
HOH
HOH
175
A
HOH
177
3
HOH
HOH
177
A
HOH
181
3
HOH
HOH
181
A
HOH
191
3
HOH
HOH
191
A
HOH
195
3
HOH
HOH
195
A
HOH
200
3
HOH
HOH
200
A
HOH
4
3
HOH
HOH
77
B
HOH
5
3
HOH
HOH
78
B
HOH
9
3
HOH
HOH
79
B
HOH
19
3
HOH
HOH
80
B
HOH
81
3
HOH
HOH
81
B
HOH
30
3
HOH
HOH
82
B
HOH
83
3
HOH
HOH
83
B
HOH
34
3
HOH
HOH
84
B
HOH
37
3
HOH
HOH
85
B
HOH
86
3
HOH
HOH
86
B
HOH
40
3
HOH
HOH
87
B
HOH
49
3
HOH
HOH
88
B
HOH
50
3
HOH
HOH
89
B
HOH
54
3
HOH
HOH
90
B
HOH
59
3
HOH
HOH
91
B
HOH
62
3
HOH
HOH
92
B
HOH
66
3
HOH
HOH
93
B
HOH
76
3
HOH
HOH
94
B
HOH
95
3
HOH
HOH
95
B
HOH
100
3
HOH
HOH
100
B
HOH
103
3
HOH
HOH
103
B
HOH
107
3
HOH
HOH
107
B
HOH
111
3
HOH
HOH
111
B
HOH
119
3
HOH
HOH
119
B
HOH
123
3
HOH
HOH
123
B
HOH
134
3
HOH
HOH
134
B
HOH
135
3
HOH
HOH
135
B
HOH
140
3
HOH
HOH
140
B
HOH
147
3
HOH
HOH
147
B
HOH
151
3
HOH
HOH
151
B
HOH
152
3
HOH
HOH
152
B
HOH
157
3
HOH
HOH
157
B
HOH
159
3
HOH
HOH
159
B
HOH
160
3
HOH
HOH
160
B
HOH
161
3
HOH
HOH
161
B
HOH
164
3
HOH
HOH
164
B
HOH
165
3
HOH
HOH
165
B
HOH
168
3
HOH
HOH
168
B
HOH
169
3
HOH
HOH
169
B
HOH
171
3
HOH
HOH
171
B
HOH
172
3
HOH
HOH
172
B
HOH
179
3
HOH
HOH
179
B
HOH
182
3
HOH
HOH
182
B
HOH
186
3
HOH
HOH
186
B
HOH
187
3
HOH
HOH
187
B
HOH
194
3
HOH
HOH
194
B
HOH
197
3
HOH
HOH
197
B
HOH
205
3
HOH
HOH
205
B
HOH
7
3
HOH
HOH
77
C
HOH
78
3
HOH
HOH
78
C
HOH
79
3
HOH
HOH
79
C
HOH
80
3
HOH
HOH
80
C
HOH
10
3
HOH
HOH
81
C
HOH
13
3
HOH
HOH
82
C
HOH
15
3
HOH
HOH
83
C
HOH
17
3
HOH
HOH
84
C
HOH
85
3
HOH
HOH
85
C
HOH
18
3
HOH
HOH
86
C
HOH
27
3
HOH
HOH
87
C
HOH
88
3
HOH
HOH
88
C
HOH
31
3
HOH
HOH
89
C
HOH
39
3
HOH
HOH
90
C
HOH
91
3
HOH
HOH
91
C
HOH
47
3
HOH
HOH
92
C
HOH
60
3
HOH
HOH
93
C
HOH
94
3
HOH
HOH
94
C
HOH
61
3
HOH
HOH
95
C
HOH
96
3
HOH
HOH
96
C
HOH
97
3
HOH
HOH
97
C
HOH
64
3
HOH
HOH
98
C
HOH
99
3
HOH
HOH
99
C
HOH
65
3
HOH
HOH
101
C
HOH
102
3
HOH
HOH
102
C
HOH
67
3
HOH
HOH
103
C
HOH
70
3
HOH
HOH
104
C
HOH
75
3
HOH
HOH
105
C
HOH
108
3
HOH
HOH
108
C
HOH
109
3
HOH
HOH
109
C
HOH
110
3
HOH
HOH
110
C
HOH
117
3
HOH
HOH
117
C
HOH
118
3
HOH
HOH
118
C
HOH
121
3
HOH
HOH
121
C
HOH
124
3
HOH
HOH
124
C
HOH
130
3
HOH
HOH
130
C
HOH
131
3
HOH
HOH
131
C
HOH
132
3
HOH
HOH
132
C
HOH
133
3
HOH
HOH
133
C
HOH
139
3
HOH
HOH
139
C
HOH
143
3
HOH
HOH
143
C
HOH
145
3
HOH
HOH
145
C
HOH
154
3
HOH
HOH
154
C
HOH
156
3
HOH
HOH
156
C
HOH
158
3
HOH
HOH
158
C
HOH
167
3
HOH
HOH
167
C
HOH
174
3
HOH
HOH
174
C
HOH
178
3
HOH
HOH
178
C
HOH
183
3
HOH
HOH
183
C
HOH
184
3
HOH
HOH
184
C
HOH
185
3
HOH
HOH
185
C
HOH
189
3
HOH
HOH
189
C
HOH
190
3
HOH
HOH
190
C
HOH
192
3
HOH
HOH
192
C
HOH
196
3
HOH
HOH
196
C
HOH
198
3
HOH
HOH
198
C
HOH
201
3
HOH
HOH
201
C
HOH
202
3
HOH
HOH
202
C
HOH
204
3
HOH
HOH
204
C
HOH
206
3
HOH
HOH
206
C
HOH
207
3
HOH
HOH
207
C
HOH
208
3
HOH
HOH
208
C
HOH
1
3
HOH
HOH
77
D
HOH
6
3
HOH
HOH
78
D
HOH
8
3
HOH
HOH
79
D
HOH
12
3
HOH
HOH
80
D
HOH
23
3
HOH
HOH
81
D
HOH
24
3
HOH
HOH
82
D
HOH
25
3
HOH
HOH
83
D
HOH
32
3
HOH
HOH
84
D
HOH
35
3
HOH
HOH
85
D
HOH
42
3
HOH
HOH
86
D
HOH
43
3
HOH
HOH
87
D
HOH
44
3
HOH
HOH
88
D
HOH
89
3
HOH
HOH
89
D
HOH
90
3
HOH
HOH
90
D
HOH
46
3
HOH
HOH
91
D
HOH
51
3
HOH
HOH
92
D
HOH
56
3
HOH
HOH
93
D
HOH
57
3
HOH
HOH
94
D
HOH
36
3
HOH
HOH
95
D
HOH
69
3
HOH
HOH
96
D
HOH
73
3
HOH
HOH
97
D
HOH
58
3
HOH
HOH
98
D
HOH
101
3
HOH
HOH
101
D
HOH
104
3
HOH
HOH
104
D
HOH
105
3
HOH
HOH
105
D
HOH
113
3
HOH
HOH
113
D
HOH
116
3
HOH
HOH
116
D
HOH
122
3
HOH
HOH
122
D
HOH
125
3
HOH
HOH
125
D
HOH
127
3
HOH
HOH
127
D
HOH
128
3
HOH
HOH
128
D
HOH
137
3
HOH
HOH
137
D
HOH
141
3
HOH
HOH
141
D
HOH
142
3
HOH
HOH
142
D
HOH
148
3
HOH
HOH
148
D
HOH
149
3
HOH
HOH
149
D
HOH
150
3
HOH
HOH
150
D
HOH
153
3
HOH
HOH
153
D
HOH
163
3
HOH
HOH
163
D
HOH
166
3
HOH
HOH
166
D
HOH
170
3
HOH
HOH
170
D
HOH
173
3
HOH
HOH
173
D
HOH
176
3
HOH
HOH
176
D
HOH
180
3
HOH
HOH
180
D
HOH
188
3
HOH
HOH
188
D
HOH
193
3
HOH
HOH
193
D
HOH
199
3
HOH
HOH
199
D
HOH
203
3
HOH
HOH
203
D
HOH
209
3
HOH
HOH
209
D
MET
1
n
1
MET
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
VAL
5
n
5
VAL
5
A
LYS
6
n
6
LYS
6
A
THR
7
n
7
THR
7
A
LEU
8
n
8
LEU
8
A
THR
9
n
9
THR
9
A
GLY
10
n
10
GLY
10
A
LYS
11
n
11
LYS
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
THR
14
n
14
THR
14
A
LEU
15
n
15
LEU
15
A
GLU
16
n
16
GLU
16
A
VAL
17
n
17
VAL
17
A
GLU
18
n
18
GLU
18
A
PRO
19
n
19
PRO
19
A
SER
20
n
20
SER
20
A
ASP
21
n
21
ASP
21
A
THR
22
n
22
THR
22
A
ILE
23
n
23
ILE
23
A
GLU
24
n
24
GLU
24
A
ASN
25
n
25
ASN
25
A
VAL
26
n
26
VAL
26
A
LYS
27
n
27
LYS
27
A
ALA
28
n
28
ALA
28
A
LYS
29
n
29
LYS
29
A
ILE
30
n
30
ILE
30
A
GLN
31
n
31
GLN
31
A
ASP
32
n
32
ASP
32
A
LYS
33
n
33
LYS
33
A
GLU
34
n
34
GLU
34
A
GLY
35
n
35
GLY
35
A
ILE
36
n
36
ILE
36
A
PRO
37
n
37
PRO
37
A
PRO
38
n
38
PRO
38
A
ASP
39
n
39
ASP
39
A
GLN
40
n
40
GLN
40
A
GLN
41
n
41
GLN
41
A
ARG
42
n
42
ARG
42
A
LEU
43
n
43
LEU
43
A
ILE
44
n
44
ILE
44
A
PHE
45
n
45
PHE
45
A
ALA
46
n
46
ALA
46
A
GLY
47
n
47
GLY
47
A
LYS
48
n
48
LYS
48
A
GLN
49
n
49
GLN
49
A
LEU
50
n
50
LEU
50
A
GLU
51
n
51
GLU
51
A
ASP
52
n
52
ASP
52
A
GLY
53
n
53
GLY
53
A
ARG
54
n
54
ARG
54
A
THR
55
n
55
THR
55
A
LEU
56
n
56
LEU
56
A
SER
57
n
57
SER
57
A
ASP
58
n
58
ASP
58
A
TYR
59
n
59
TYR
59
A
ASN
60
n
60
ASN
60
A
ILE
61
n
61
ILE
61
A
GLN
62
n
62
GLN
62
A
LYS
63
n
63
LYS
63
A
GLU
64
n
64
GLU
64
A
SER
65
n
65
SER
65
A
THR
66
n
66
THR
66
A
LEU
67
n
67
LEU
67
A
HIS
68
n
68
HIS
68
A
LEU
69
n
69
LEU
69
A
VAL
70
n
70
VAL
70
A
LEU
71
n
71
LEU
71
A
ARG
72
n
72
ARG
72
A
LEU
73
n
73
LEU
73
A
ARG
74
n
74
ARG
74
A
GLY
75
n
75
GLY
75
A
GLY
76
n
76
GLY
76
A
MET
1
n
1
MET
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
PHE
4
n
4
PHE
4
B
VAL
5
n
5
VAL
5
B
LYS
6
n
6
LYS
6
B
THR
7
n
7
THR
7
B
LEU
8
n
8
LEU
8
B
THR
9
n
9
THR
9
B
GLY
10
n
10
GLY
10
B
LYS
11
n
11
LYS
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
THR
14
n
14
THR
14
B
LEU
15
n
15
LEU
15
B
GLU
16
n
16
GLU
16
B
VAL
17
n
17
VAL
17
B
GLU
18
n
18
GLU
18
B
PRO
19
n
19
PRO
19
B
SER
20
n
20
SER
20
B
ASP
21
n
21
ASP
21
B
THR
22
n
22
THR
22
B
ILE
23
n
23
ILE
23
B
GLU
24
n
24
GLU
24
B
ASN
25
n
25
ASN
25
B
VAL
26
n
26
VAL
26
B
LYS
27
n
27
LYS
27
B
ALA
28
n
28
ALA
28
B
LYS
29
n
29
LYS
29
B
ILE
30
n
30
ILE
30
B
GLN
31
n
31
GLN
31
B
ASP
32
n
32
ASP
32
B
LYS
33
n
33
LYS
33
B
GLU
34
n
34
GLU
34
B
GLY
35
n
35
GLY
35
B
ILE
36
n
36
ILE
36
B
PRO
37
n
37
PRO
37
B
PRO
38
n
38
PRO
38
B
ASP
39
n
39
ASP
39
B
GLN
40
n
40
GLN
40
B
GLN
41
n
41
GLN
41
B
ARG
42
n
42
ARG
42
B
LEU
43
n
43
LEU
43
B
ILE
44
n
44
ILE
44
B
PHE
45
n
45
PHE
45
B
ALA
46
n
46
ALA
46
B
GLY
47
n
47
GLY
47
B
LYS
48
n
48
LYS
48
B
GLN
49
n
49
GLN
49
B
LEU
50
n
50
LEU
50
B
GLU
51
n
51
GLU
51
B
ASP
52
n
52
ASP
52
B
GLY
53
n
53
GLY
53
B
ARG
54
n
54
ARG
54
B
THR
55
n
55
THR
55
B
LEU
56
n
56
LEU
56
B
SER
57
n
57
SER
57
B
ASP
58
n
58
ASP
58
B
TYR
59
n
59
TYR
59
B
ASN
60
n
60
ASN
60
B
ILE
61
n
61
ILE
61
B
GLN
62
n
62
GLN
62
B
LYS
63
n
63
LYS
63
B
GLU
64
n
64
GLU
64
B
SER
65
n
65
SER
65
B
THR
66
n
66
THR
66
B
LEU
67
n
67
LEU
67
B
HIS
68
n
68
HIS
68
B
LEU
69
n
69
LEU
69
B
VAL
70
n
70
VAL
70
B
LEU
71
n
71
LEU
71
B
ARG
72
n
72
ARG
72
B
LEU
73
n
73
LEU
73
B
ARG
74
n
74
ARG
74
B
GLY
75
n
75
GLY
75
B
GLY
76
n
76
GLY
76
B
MET
1
n
1
MET
1
C
GLN
2
n
2
GLN
2
C
ILE
3
n
3
ILE
3
C
PHE
4
n
4
PHE
4
C
VAL
5
n
5
VAL
5
C
LYS
6
n
6
LYS
6
C
THR
7
n
7
THR
7
C
LEU
8
n
8
LEU
8
C
THR
9
n
9
THR
9
C
GLY
10
n
10
GLY
10
C
LYS
11
n
11
LYS
11
C
THR
12
n
12
THR
12
C
ILE
13
n
13
ILE
13
C
THR
14
n
14
THR
14
C
LEU
15
n
15
LEU
15
C
GLU
16
n
16
GLU
16
C
VAL
17
n
17
VAL
17
C
GLU
18
n
18
GLU
18
C
PRO
19
n
19
PRO
19
C
SER
20
n
20
SER
20
C
ASP
21
n
21
ASP
21
C
THR
22
n
22
THR
22
C
ILE
23
n
23
ILE
23
C
GLU
24
n
24
GLU
24
C
ASN
25
n
25
ASN
25
C
VAL
26
n
26
VAL
26
C
LYS
27
n
27
LYS
27
C
ALA
28
n
28
ALA
28
C
LYS
29
n
29
LYS
29
C
ILE
30
n
30
ILE
30
C
GLN
31
n
31
GLN
31
C
ASP
32
n
32
ASP
32
C
LYS
33
n
33
LYS
33
C
GLU
34
n
34
GLU
34
C
GLY
35
n
35
GLY
35
C
ILE
36
n
36
ILE
36
C
PRO
37
n
37
PRO
37
C
PRO
38
n
38
PRO
38
C
ASP
39
n
39
ASP
39
C
GLN
40
n
40
GLN
40
C
GLN
41
n
41
GLN
41
C
ARG
42
n
42
ARG
42
C
LEU
43
n
43
LEU
43
C
ILE
44
n
44
ILE
44
C
PHE
45
n
45
PHE
45
C
ALA
46
n
46
ALA
46
C
GLY
47
n
47
GLY
47
C
LYS
48
n
48
LYS
48
C
GLN
49
n
49
GLN
49
C
LEU
50
n
50
LEU
50
C
GLU
51
n
51
GLU
51
C
ASP
52
n
52
ASP
52
C
GLY
53
n
53
GLY
53
C
ARG
54
n
54
ARG
54
C
THR
55
n
55
THR
55
C
LEU
56
n
56
LEU
56
C
SER
57
n
57
SER
57
C
ASP
58
n
58
ASP
58
C
TYR
59
n
59
TYR
59
C
ASN
60
n
60
ASN
60
C
ILE
61
n
61
ILE
61
C
GLN
62
n
62
GLN
62
C
LYS
63
n
63
LYS
63
C
GLU
64
n
64
GLU
64
C
SER
65
n
65
SER
65
C
THR
66
n
66
THR
66
C
LEU
67
n
67
LEU
67
C
HIS
68
n
68
HIS
68
C
LEU
69
n
69
LEU
69
C
VAL
70
n
70
VAL
70
C
LEU
71
n
71
LEU
71
C
ARG
72
n
72
ARG
72
C
LEU
73
n
73
LEU
73
C
ARG
74
n
74
ARG
74
C
GLY
75
n
75
GLY
75
C
GLY
76
n
76
GLY
76
C
MET
1
n
1
MET
1
D
GLN
2
n
2
GLN
2
D
ILE
3
n
3
ILE
3
D
PHE
4
n
4
PHE
4
D
VAL
5
n
5
VAL
5
D
LYS
6
n
6
LYS
6
D
THR
7
n
7
THR
7
D
LEU
8
n
8
LEU
8
D
THR
9
n
9
THR
9
D
GLY
10
n
10
GLY
10
D
LYS
11
n
11
LYS
11
D
THR
12
n
12
THR
12
D
ILE
13
n
13
ILE
13
D
THR
14
n
14
THR
14
D
LEU
15
n
15
LEU
15
D
GLU
16
n
16
GLU
16
D
VAL
17
n
17
VAL
17
D
GLU
18
n
18
GLU
18
D
PRO
19
n
19
PRO
19
D
SER
20
n
20
SER
20
D
ASP
21
n
21
ASP
21
D
THR
22
n
22
THR
22
D
ILE
23
n
23
ILE
23
D
GLU
24
n
24
GLU
24
D
ASN
25
n
25
ASN
25
D
VAL
26
n
26
VAL
26
D
LYS
27
n
27
LYS
27
D
ALA
28
n
28
ALA
28
D
LYS
29
n
29
LYS
29
D
ILE
30
n
30
ILE
30
D
GLN
31
n
31
GLN
31
D
ASP
32
n
32
ASP
32
D
LYS
33
n
33
LYS
33
D
GLU
34
n
34
GLU
34
D
GLY
35
n
35
GLY
35
D
ILE
36
n
36
ILE
36
D
PRO
37
n
37
PRO
37
D
PRO
38
n
38
PRO
38
D
ASP
39
n
39
ASP
39
D
GLN
40
n
40
GLN
40
D
GLN
41
n
41
GLN
41
D
ARG
42
n
42
ARG
42
D
LEU
43
n
43
LEU
43
D
ILE
44
n
44
ILE
44
D
PHE
45
n
45
PHE
45
D
ALA
46
n
46
ALA
46
D
GLY
47
n
47
GLY
47
D
LYS
48
n
48
LYS
48
D
GLN
49
n
49
GLN
49
D
LEU
50
n
50
LEU
50
D
GLU
51
n
51
GLU
51
D
ASP
52
n
52
ASP
52
D
GLY
53
n
53
GLY
53
D
ARG
54
n
54
ARG
54
D
THR
55
n
55
THR
55
D
LEU
56
n
56
LEU
56
D
SER
57
n
57
SER
57
D
ASP
58
n
58
ASP
58
D
TYR
59
n
59
TYR
59
D
ASN
60
n
60
ASN
60
D
ILE
61
n
61
ILE
61
D
GLN
62
n
62
GLN
62
D
LYS
63
n
63
LYS
63
D
GLU
64
n
64
GLU
64
D
SER
65
n
65
SER
65
D
THR
66
n
66
THR
66
D
LEU
67
n
67
LEU
67
D
HIS
68
n
68
HIS
68
D
LEU
69
n
69
LEU
69
D
VAL
70
n
70
VAL
70
D
LEU
71
n
71
LEU
71
D
ARG
72
n
72
ARG
72
D
LEU
73
n
73
LEU
73
D
ARG
74
n
74
ARG
74
D
GLY
75
n
75
GLY
75
D
GLY
76
n
76
GLY
76
D
6.1851
0.6200
-1.8968
5.8836
2.0694
5.6652
-0.0973
-0.1811
0.0178
-0.3919
0.2617
-0.4503
-0.0799
0.4082
-0.1643
-0.2142
-0.0146
0.0788
-0.2154
-0.0333
-0.2328
refined
65.1500
104.4568
-8.3844
X-RAY DIFFRACTION
27.6342
7.3592
-9.2130
48.4461
25.0188
19.3070
-1.3682
-0.9066
1.9022
-0.2988
1.1423
-0.1690
-1.6609
-0.4303
0.2259
0.0815
-0.0665
-0.1197
0.1347
0.0276
0.2421
refined
76.9964
117.1411
-9.8929
X-RAY DIFFRACTION
7.1760
1.7969
-0.3084
5.7935
0.7757
5.1232
-0.0634
-0.1437
-0.3734
0.0004
0.1009
-0.1934
0.0132
0.0464
-0.0376
-0.1878
-0.0413
-0.0083
-0.2153
0.0254
-0.1530
refined
50.0589
67.2469
-6.4630
X-RAY DIFFRACTION
20.7855
16.1192
14.8239
45.4594
44.4604
51.4500
-0.0080
-2.0767
1.3891
1.1012
-0.0612
0.0225
-0.2767
-0.1117
0.0693
0.0270
0.0371
-0.0115
0.0648
-0.1269
0.1308
refined
57.3004
81.6387
-2.3323
X-RAY DIFFRACTION
6.2150
0.3551
-1.9972
6.3373
1.8680
5.6054
0.2665
-0.3776
0.4538
-0.1651
-0.1031
-0.0359
-0.4077
0.0916
-0.1634
-0.2144
-0.0186
0.0359
-0.2217
-0.0774
-0.2313
refined
25.0448
38.6747
-18.0808
X-RAY DIFFRACTION
51.2139
-7.1171
-41.3215
77.5137
-0.4831
33.8464
0.8493
0.4514
1.4319
-0.7496
-0.1701
-2.1042
0.4010
0.3431
-0.6792
0.1552
-0.1068
0.0178
0.1474
0.1525
0.2006
refined
37.7342
50.3819
-16.8016
X-RAY DIFFRACTION
5.7288
1.7079
-0.8420
7.3063
0.3592
4.6049
0.0837
-0.0202
0.2287
-0.0975
-0.1042
0.3715
-0.0786
-0.0458
0.0206
-0.2020
-0.0395
-0.0231
-0.1833
0.0081
-0.1565
refined
-12.1553
23.5689
-20.0081
X-RAY DIFFRACTION
51.5448
9.3552
-39.5690
23.4364
-17.5284
35.3004
0.6665
0.8905
0.3696
-2.3046
-0.4790
-0.9800
0.3947
0.0543
-0.1876
0.1141
-0.0212
0.1797
0.0058
-0.0631
0.1272
refined
2.3104
30.7882
-23.9149
X-RAY DIFFRACTION
A
1
A
62
X-RAY DIFFRACTION
1
A
64
A
70
X-RAY DIFFRACTION
1
A
71
A
76
X-RAY DIFFRACTION
2
B
1
B
62
X-RAY DIFFRACTION
3
B
64
B
70
X-RAY DIFFRACTION
3
B
71
B
76
X-RAY DIFFRACTION
4
C
1
C
62
X-RAY DIFFRACTION
5
C
64
C
70
X-RAY DIFFRACTION
5
C
71
C
76
X-RAY DIFFRACTION
6
D
1
D
62
X-RAY DIFFRACTION
7
D
64
D
70
X-RAY DIFFRACTION
7
D
71
D
76
X-RAY DIFFRACTION
8
software_defined_assembly
PISA
1
monomeric
software_defined_assembly
PISA
1
monomeric
software_defined_assembly
PISA
1
monomeric
software_defined_assembly
PISA
1
monomeric
A
ASP
21
A
OD2
ASP
21
1_555
A
ZN
700
A
F
ZN
ZN
1_555
A
HOH
88
K
O
HOH
1_555
125.1
C
ASP
21
C
OD2
ASP
21
1_555
C
ZN
200
A
I
ZN
ZN
1_555
C
HOH
85
M
O
HOH
1_555
135.5
D
ASP
21
D
OD1
ASP
21
1_555
D
ZN
900
B
J
ZN
ZN
1_555
D
HOH
89
N
O
HOH
1_555
124.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
13
A
O
ILE
13
A
N
VAL
5
A
N
VAL
5
A
N
LYS
6
A
N
LYS
6
A
O
LEU
69
A
O
LEU
69
A
O
VAL
70
A
O
VAL
70
A
N
ARG
42
A
N
ARG
42
A
N
PHE
45
A
N
PHE
45
A
O
LYS
48
A
O
LYS
48
B
O
LEU
15
B
O
LEU
15
B
N
ILE
3
B
N
ILE
3
B
N
PHE
4
B
N
PHE
4
B
O
LEU
67
B
O
LEU
67
B
O
HIS
68
B
O
HIS
68
B
N
ILE
44
B
N
ILE
44
B
N
PHE
45
B
N
PHE
45
B
O
LYS
48
B
O
LYS
48
C
O
ILE
13
C
O
ILE
13
C
N
VAL
5
C
N
VAL
5
C
N
LYS
6
C
N
LYS
6
C
O
LEU
69
C
O
LEU
69
C
O
VAL
70
C
O
VAL
70
C
N
ARG
42
C
N
ARG
42
C
N
PHE
45
C
N
PHE
45
C
O
LYS
48
C
O
LYS
48
D
O
LEU
15
D
O
LEU
15
D
N
ILE
3
D
N
ILE
3
D
N
PHE
4
D
N
PHE
4
D
O
LEU
67
D
O
LEU
67
D
O
VAL
70
D
O
VAL
70
D
N
ARG
42
D
N
ARG
42
D
N
PHE
45
D
N
PHE
45
D
O
LYS
48
D
O
LYS
48
1
3.34
0.50
120.30
123.64
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
42
42
42
B
B
B
N
1
A
A
N
CA
MET
MET
1
1
0.177
0.020
1.459
1.636
N
1
A
A
C
O
GLY
GLY
76
76
0.148
0.016
1.232
1.380
N
1
B
B
CD
OE2
GLU
GLU
18
18
0.068
0.011
1.252
1.320
N
1
C
C
N
CA
MET
MET
1
1
0.211
0.020
1.459
1.670
N
1
C
LEU
73
-39.02
111.12
42.133
0.966
0.946
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23611
0.18569
0.18820
1.96
25.68
1448
27141
5.1
99.58
1.00
0.00
7.252
0.111
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.153
0.150
0.80
0.80
1.20
1UBQ
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.96
25.68
209
2619
6
0
2404
0.023
0.022
2580
0.002
0.020
1806
1.885
1.994
3491
1.008
3.000
4471
6.573
5.000
330
38.892
25.254
118
16.208
15.000
410
19.941
15.000
20
0.128
0.200
403
0.009
0.020
2789
0.003
0.020
433
0.246
0.200
527
0.206
0.200
1904
0.175
0.200
1291
0.089
0.200
1508
0.211
0.200
175
0.103
0.200
2
0.195
0.200
6
0.378
0.200
65
0.291
0.200
117
0.238
0.200
37
0.046
0.200
3
1.271
1.500
2025
0.348
1.500
615
1.634
2.000
2617
2.923
3.000
1039
4.225
4.500
873
1
B
1
383
X-RAY DIFFRACTION
tight positional
0.02
0.05
1
A
2
383
X-RAY DIFFRACTION
tight positional
0.02
0.05
1
B
1
509
X-RAY DIFFRACTION
medium positional
0.73
0.50
1
A
2
486
X-RAY DIFFRACTION
medium positional
0.26
0.50
1
A
3
189
X-RAY DIFFRACTION
medium positional
0.10
0.50
2
B
3
189
X-RAY DIFFRACTION
medium positional
0.10
0.50
3
C
3
189
X-RAY DIFFRACTION
medium positional
0.11
0.50
4
D
3
189
X-RAY DIFFRACTION
medium positional
0.11
0.50
1
A
3
233
X-RAY DIFFRACTION
loose positional
0.42
5.00
2
B
3
233
X-RAY DIFFRACTION
loose positional
0.54
5.00
3
C
3
233
X-RAY DIFFRACTION
loose positional
0.45
5.00
4
D
3
233
X-RAY DIFFRACTION
loose positional
0.75
5.00
1
B
1
383
X-RAY DIFFRACTION
tight thermal
0.12
0.50
1
A
2
383
X-RAY DIFFRACTION
tight thermal
0.13
0.50
1
B
1
509
X-RAY DIFFRACTION
medium thermal
0.56
2.00
1
A
2
486
X-RAY DIFFRACTION
medium thermal
0.42
2.00
1
A
3
189
X-RAY DIFFRACTION
medium thermal
0.61
2.00
2
B
3
189
X-RAY DIFFRACTION
medium thermal
0.63
2.00
3
C
3
189
X-RAY DIFFRACTION
medium thermal
0.63
2.00
4
D
3
189
X-RAY DIFFRACTION
medium thermal
0.60
2.00
1
A
3
233
X-RAY DIFFRACTION
loose thermal
1.38
10.00
2
B
3
233
X-RAY DIFFRACTION
loose thermal
1.51
10.00
3
C
3
233
X-RAY DIFFRACTION
loose thermal
1.41
10.00
4
D
3
233
X-RAY DIFFRACTION
loose thermal
1.31
10.00
0.290
0.201
2.010
101
1986
20
100.00
1.960
25.68
3HM3
28616
0.081
1
54.367
42.900
99.600
0.902
1.96
2.01
1
43.10
100.00
0.702
2.01
2.06
1
43.30
100.00
0.548
2.06
2.11
1
43.40
100.00
0.434
2.11
2.17
1
43.50
100.00
0.344
2.17
2.24
1
43.60
100.00
0.286
2.24
2.32
1
43.60
100.00
0.222
2.32
2.42
1
43.70
100.00
0.180
2.42
2.53
1
43.70
100.00
0.152
2.53
2.66
1
43.70
100.00
0.123
2.66
2.83
1
43.60
100.00
0.103
2.83
3.04
1
43.50
100.00
0.092
3.04
3.35
1
43.20
100.00
0.081
3.35
3.84
1
42.70
100.00
0.061
3.84
4.83
1
40.40
99.90
0.046
4.83
50.00
1
38.60
94.30
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.2.0019
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.005
data scaling
HKL-2000
The Structure and conformation of Lys-63 linked tetra-ubiquitin
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
A
THR
22
A
THR
22
HELX_P
A
GLY
35
A
GLY
35
1
1
14
A
PRO
37
A
PRO
37
HELX_P
A
ASP
39
A
ASP
39
5
2
3
B
THR
22
B
THR
22
HELX_P
B
GLY
35
B
GLY
35
1
3
14
B
PRO
37
B
PRO
37
HELX_P
B
ASP
39
B
ASP
39
5
4
3
B
LEU
56
B
LEU
56
HELX_P
B
ASN
60
B
ASN
60
5
5
5
C
THR
22
C
THR
22
HELX_P
C
GLY
35
C
GLY
35
1
6
14
C
PRO
37
C
PRO
37
HELX_P
C
ASP
39
C
ASP
39
5
7
3
D
THR
22
D
THR
22
HELX_P
D
GLY
35
D
GLY
35
1
8
14
D
PRO
37
D
PRO
37
HELX_P
D
ASP
39
D
ASP
39
5
9
3
D
LEU
56
D
LEU
56
HELX_P
D
ASN
60
D
ASN
60
5
10
5
covale
1.331
one
A
LYS
63
A
NZ
LYS
63
1_555
B
GLY
76
B
C
GLY
76
1_555
covale
1.342
one
B
LYS
63
B
NZ
LYS
63
1_555
C
GLY
76
C
C
GLY
76
1_555
covale
1.330
one
C
LYS
63
C
NZ
LYS
63
1_555
D
GLY
76
D
C
GLY
76
1_555
metalc
2.042
A
A
ASP
21
A
OD2
ASP
21
1_555
A
ZN
700
F
ZN
ZN
1_555
metalc
2.109
B
A
GLU
64
A
OE1
GLU
64
1_555
A
ZN
600
E
ZN
ZN
1_555
metalc
1.823
A
A
GLU
64
A
OE2
GLU
64
1_555
A
ZN
600
E
ZN
ZN
1_555
metalc
1.893
A
A
HOH
88
K
O
HOH
1_555
A
ZN
700
F
ZN
ZN
1_555
metalc
1.962
B
B
ASP
21
B
OD1
ASP
21
1_555
B
ZN
400
G
ZN
ZN
1_555
metalc
2.222
A
B
HOH
91
L
O
HOH
1_555
B
ZN
400
G
ZN
ZN
1_555
metalc
2.098
A
C
ASP
21
C
OD2
ASP
21
1_555
C
ZN
200
I
ZN
ZN
1_555
metalc
2.081
B
C
ASP
21
C
OD2
ASP
21
1_555
C
ZN
200
I
ZN
ZN
1_555
metalc
2.040
B
C
GLU
64
C
OE1
GLU
64
1_555
C
ZN
100
H
ZN
ZN
1_555
metalc
1.850
A
C
HOH
85
M
O
HOH
1_555
C
ZN
200
I
ZN
ZN
1_555
metalc
2.069
B
D
ASP
21
D
OD1
ASP
21
1_555
D
ZN
900
J
ZN
ZN
1_555
metalc
1.774
B
D
HOH
89
N
O
HOH
1_555
D
ZN
900
J
ZN
ZN
1_555
SIGNALING PROTEIN
Ubiquitin chain, Lys63-linked, tetrameric ubiquitin, Isopeptide bond, Nucleus, Phosphoprotein, SIGNALING PROTEIN
B
D
A
C
A
B
C
D
B
PHE
4
B
PHE
4
B
ASN
60
B
ASN
60
2
D
PHE
4
D
PHE
4
D
ASN
60
D
ASN
60
2
B
SER
65
B
SER
65
B
ARG
72
B
ARG
72
2
D
SER
65
D
SER
65
D
ARG
72
D
ARG
72
2
A
PHE
4
A
PHE
4
A
ASN
60
A
ASN
60
2
C
PHE
4
C
PHE
4
C
ASN
60
C
ASN
60
2
A
SER
65
A
SER
65
A
ARG
72
A
ARG
72
2
C
SER
65
C
SER
65
C
ARG
72
C
ARG
72
2
A
LEU
15
A
LEU
15
A
LYS
27
A
LYS
27
5
B
LEU
15
B
LEU
15
B
LYS
27
B
LYS
27
5
C
LEU
15
C
LEU
15
C
LYS
27
C
LYS
27
5
D
LEU
15
D
LEU
15
D
LYS
27
D
LYS
27
5
A
GLN
40
A
GLN
40
A
PHE
45
A
PHE
45
5
B
GLN
40
B
GLN
40
B
PHE
45
B
PHE
45
5
C
GLN
40
C
GLN
40
C
PHE
45
C
PHE
45
5
D
GLN
40
D
GLN
40
D
PHE
45
D
PHE
45
5
A
LEU
50
A
LEU
50
A
ILE
61
A
ILE
61
5
B
LEU
50
B
LEU
50
B
ILE
61
B
ILE
61
5
C
LEU
50
C
LEU
50
C
ILE
61
C
ILE
61
5
D
LEU
50
D
LEU
50
D
ILE
61
D
ILE
61
5
A
THR
66
A
THR
66
A
LEU
69
A
LEU
69
5
B
THR
66
B
THR
66
B
LEU
69
B
LEU
69
5
C
THR
66
C
THR
66
C
LEU
69
C
LEU
69
5
D
THR
66
D
THR
66
D
LEU
69
D
LEU
69
5
UBIQ_HUMAN
UNP
1
1
P62988
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
1
76
3HM3
1
76
P62988
A
1
1
76
1
76
3HM3
1
76
P62988
B
1
1
76
1
76
3HM3
1
76
P62988
C
1
1
76
1
76
3HM3
1
76
P62988
D
1
1
76
5
5
5
5
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
THR
12
A
THR
12
A
GLU
16
A
GLU
16
A
GLN
2
A
GLN
2
A
THR
7
A
THR
7
A
THR
66
A
THR
66
A
LEU
71
A
LEU
71
A
GLN
41
A
GLN
41
A
PHE
45
A
PHE
45
A
LYS
48
A
LYS
48
A
GLN
49
A
GLN
49
B
THR
12
B
THR
12
B
GLU
16
B
GLU
16
B
GLN
2
B
GLN
2
B
LYS
6
B
LYS
6
B
THR
66
B
THR
66
B
LEU
71
B
LEU
71
B
GLN
41
B
GLN
41
B
PHE
45
B
PHE
45
B
LYS
48
B
LYS
48
B
GLN
49
B
GLN
49
C
THR
12
C
THR
12
C
GLU
16
C
GLU
16
C
GLN
2
C
GLN
2
C
THR
7
C
THR
7
C
THR
66
C
THR
66
C
LEU
71
C
LEU
71
C
GLN
41
C
GLN
41
C
PHE
45
C
PHE
45
C
LYS
48
C
LYS
48
C
GLN
49
C
GLN
49
D
THR
12
D
THR
12
D
GLU
16
D
GLU
16
D
GLN
2
D
GLN
2
D
LYS
6
D
LYS
6
D
THR
66
D
THR
66
D
LEU
71
D
LEU
71
D
GLN
41
D
GLN
41
D
PHE
45
D
PHE
45
D
LYS
48
D
LYS
48
D
GLN
49
D
GLN
49
BINDING SITE FOR RESIDUE ZN A 600
A
ZN
600
Software
3
BINDING SITE FOR RESIDUE ZN A 700
A
ZN
700
Software
4
BINDING SITE FOR RESIDUE ZN B 400
B
ZN
400
Software
5
BINDING SITE FOR RESIDUE ZN C 100
C
ZN
100
Software
3
BINDING SITE FOR RESIDUE ZN C 200
C
ZN
200
Software
4
BINDING SITE FOR RESIDUE ZN D 900
D
ZN
900
Software
4
A
GLU
64
A
GLU
64
3
1_555
C
HIS
68
C
HIS
68
3
7_564
C
HOH
121
M
HOH
3
7_564
A
GLU
18
A
GLU
18
4
12_664
A
GLU
18
A
GLU
18
4
1_555
A
ASP
21
A
ASP
21
4
1_555
A
HOH
88
K
HOH
4
1_555
B
GLU
18
B
GLU
18
5
7_564
B
ASP
21
B
ASP
21
5
1_555
B
ASN
25
B
ASN
25
5
1_555
B
LYS
29
B
LYS
29
5
1_555
B
HOH
91
L
HOH
5
1_555
A
HIS
68
A
HIS
68
3
10_655
A
HOH
92
K
HOH
3
10_655
C
GLU
64
C
GLU
64
3
1_555
C
GLU
18
C
GLU
18
4
6_555
C
ASP
21
C
ASP
21
4
1_555
C
LYS
29
C
LYS
29
4
1_555
C
HOH
85
M
HOH
4
1_555
D
GLU
18
D
GLU
18
4
1_555
D
GLU
18
D
GLU
18
4
10_554
D
ASP
21
D
ASP
21
4
1_555
D
HOH
89
N
HOH
4
1_555
198
P 21 3