0.025740
0.014861
0.000000
0.000000
0.029722
0.000000
0.000000
0.000000
0.009644
0.00000
0.00000
0.00000
Tolbert, W.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
38.850
38.850
103.690
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
107
13264
13269
10.1073/pnas.1005183107
20624990
Structural basis for agonism and antagonism of hepatocyte growth factor.
2010
10.2210/pdb3hmt/pdb
pdb_00003hmt
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2005-03-31
MARMOSAIC 225 mm CCD
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.00000
1.0
5ID-B
APS
1.00000
SYNCHROTRON
APS BEAMLINE 5ID-B
11794.679
Hepatocyte growth factor
N-terminal domain: UNP residues 28-126
2
man
polymer
18.015
water
145
nat
water
Scatter factor, SF, Hepatopoeitin-A, Hepatocyte growth factor alpha chain, Hepatocyte growth factor beta chain
no
no
GSYAEGQRKRRNTIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMS
SGVKKEFGHEFDLYENKDYIR
GSYAEGQRKRRNTIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMS
SGVKKEFGHEFDLYENKDYIR
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Expressed as a thioredoxin fusion protein
sample
HGF, HPTA
9606
Homo sapiens
562
Escherichia coli
Origami B(DE)
plasmid
pET-Duet1/Trx
1
1.92
35.78
The structure factor file contains Friedel pairs
VAPOR DIFFUSION, HANGING DROP
7.0
2.4 M sodium malonate pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Version format compliance
Data collection
Database references
Refinement description
1
0
2010-06-09
1
1
2011-07-13
1
2
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
NK1 structure
NK1 structure
NK1-heparin complexes
NK1-heparin complexes
NK1 structure
NMR N-terminal domain structure
NK1 structure
mouse NK1 structure
mouse NK2 N-terminal domain structure
NK2 N-terminal domain structure
NK2 fragment
RCSB
Y
RCSB
2009-05-29
REL
REL
HOH
water
1NK1
PDB entry 1NK1
PDB
experimental model
HOH
2001
2
HOH
HOH
2001
A
HOH
2004
2
HOH
HOH
2004
A
HOH
2005
2
HOH
HOH
2005
A
HOH
2008
2
HOH
HOH
2008
A
HOH
2010
2
HOH
HOH
2010
A
HOH
2012
2
HOH
HOH
2012
A
HOH
2013
2
HOH
HOH
2013
A
HOH
2014
2
HOH
HOH
2014
A
HOH
2016
2
HOH
HOH
2016
A
HOH
2018
2
HOH
HOH
2018
A
HOH
2021
2
HOH
HOH
2021
A
HOH
2022
2
HOH
HOH
2022
A
HOH
2023
2
HOH
HOH
2023
A
HOH
2024
2
HOH
HOH
2024
A
HOH
2026
2
HOH
HOH
2026
A
HOH
2027
2
HOH
HOH
2027
A
HOH
2028
2
HOH
HOH
2028
A
HOH
2029
2
HOH
HOH
2029
A
HOH
2033
2
HOH
HOH
2033
A
HOH
2034
2
HOH
HOH
2034
A
HOH
2037
2
HOH
HOH
2037
A
HOH
2039
2
HOH
HOH
2039
A
HOH
2041
2
HOH
HOH
2041
A
HOH
2043
2
HOH
HOH
2043
A
HOH
2046
2
HOH
HOH
2046
A
HOH
2050
2
HOH
HOH
2050
A
HOH
2053
2
HOH
HOH
2053
A
HOH
2054
2
HOH
HOH
2054
A
HOH
2055
2
HOH
HOH
2055
A
HOH
2056
2
HOH
HOH
2056
A
HOH
2058
2
HOH
HOH
2058
A
HOH
2059
2
HOH
HOH
2059
A
HOH
2063
2
HOH
HOH
2063
A
HOH
2064
2
HOH
HOH
2064
A
HOH
2065
2
HOH
HOH
2065
A
HOH
2068
2
HOH
HOH
2068
A
HOH
2069
2
HOH
HOH
2069
A
HOH
2072
2
HOH
HOH
2072
A
HOH
2073
2
HOH
HOH
2073
A
HOH
2076
2
HOH
HOH
2076
A
HOH
2080
2
HOH
HOH
2080
A
HOH
2082
2
HOH
HOH
2082
A
HOH
2086
2
HOH
HOH
2086
A
HOH
2088
2
HOH
HOH
2088
A
HOH
2091
2
HOH
HOH
2091
A
HOH
2092
2
HOH
HOH
2092
A
HOH
2093
2
HOH
HOH
2093
A
HOH
2095
2
HOH
HOH
2095
A
HOH
2098
2
HOH
HOH
2098
A
HOH
2100
2
HOH
HOH
2100
A
HOH
2102
2
HOH
HOH
2102
A
HOH
2104
2
HOH
HOH
2104
A
HOH
2105
2
HOH
HOH
2105
A
HOH
2107
2
HOH
HOH
2107
A
HOH
2109
2
HOH
HOH
2109
A
HOH
2110
2
HOH
HOH
2110
A
HOH
2111
2
HOH
HOH
2111
A
HOH
2112
2
HOH
HOH
2112
A
HOH
2113
2
HOH
HOH
2113
A
HOH
2115
2
HOH
HOH
2115
A
HOH
2116
2
HOH
HOH
2116
A
HOH
2119
2
HOH
HOH
2119
A
HOH
2121
2
HOH
HOH
2121
A
HOH
2122
2
HOH
HOH
2122
A
HOH
2125
2
HOH
HOH
2125
A
HOH
2126
2
HOH
HOH
2126
A
HOH
2128
2
HOH
HOH
2128
A
HOH
2131
2
HOH
HOH
2131
A
HOH
2135
2
HOH
HOH
2135
A
HOH
2137
2
HOH
HOH
2137
A
HOH
2139
2
HOH
HOH
2139
A
HOH
2140
2
HOH
HOH
2140
A
HOH
2142
2
HOH
HOH
2142
A
HOH
2143
2
HOH
HOH
2143
A
HOH
2144
2
HOH
HOH
2144
A
HOH
2002
2
HOH
HOH
2002
B
HOH
2003
2
HOH
HOH
2003
B
HOH
2006
2
HOH
HOH
2006
B
HOH
2007
2
HOH
HOH
2007
B
HOH
2009
2
HOH
HOH
2009
B
HOH
2011
2
HOH
HOH
2011
B
HOH
2015
2
HOH
HOH
2015
B
HOH
2017
2
HOH
HOH
2017
B
HOH
2019
2
HOH
HOH
2019
B
HOH
2020
2
HOH
HOH
2020
B
HOH
2025
2
HOH
HOH
2025
B
HOH
2030
2
HOH
HOH
2030
B
HOH
2031
2
HOH
HOH
2031
B
HOH
2032
2
HOH
HOH
2032
B
HOH
2035
2
HOH
HOH
2035
B
HOH
2036
2
HOH
HOH
2036
B
HOH
2038
2
HOH
HOH
2038
B
HOH
2040
2
HOH
HOH
2040
B
HOH
2042
2
HOH
HOH
2042
B
HOH
2044
2
HOH
HOH
2044
B
HOH
2045
2
HOH
HOH
2045
B
HOH
2047
2
HOH
HOH
2047
B
HOH
2048
2
HOH
HOH
2048
B
HOH
2049
2
HOH
HOH
2049
B
HOH
2051
2
HOH
HOH
2051
B
HOH
2052
2
HOH
HOH
2052
B
HOH
2057
2
HOH
HOH
2057
B
HOH
2060
2
HOH
HOH
2060
B
HOH
2061
2
HOH
HOH
2061
B
HOH
2062
2
HOH
HOH
2062
B
HOH
2066
2
HOH
HOH
2066
B
HOH
2067
2
HOH
HOH
2067
B
HOH
2070
2
HOH
HOH
2070
B
HOH
2071
2
HOH
HOH
2071
B
HOH
2074
2
HOH
HOH
2074
B
HOH
2075
2
HOH
HOH
2075
B
HOH
2077
2
HOH
HOH
2077
B
HOH
2078
2
HOH
HOH
2078
B
HOH
2079
2
HOH
HOH
2079
B
HOH
2081
2
HOH
HOH
2081
B
HOH
2083
2
HOH
HOH
2083
B
HOH
2084
2
HOH
HOH
2084
B
HOH
2085
2
HOH
HOH
2085
B
HOH
2087
2
HOH
HOH
2087
B
HOH
2089
2
HOH
HOH
2089
B
HOH
2090
2
HOH
HOH
2090
B
HOH
2094
2
HOH
HOH
2094
B
HOH
2096
2
HOH
HOH
2096
B
HOH
2097
2
HOH
HOH
2097
B
HOH
2099
2
HOH
HOH
2099
B
HOH
2101
2
HOH
HOH
2101
B
HOH
2103
2
HOH
HOH
2103
B
HOH
2106
2
HOH
HOH
2106
B
HOH
2108
2
HOH
HOH
2108
B
HOH
2114
2
HOH
HOH
2114
B
HOH
2117
2
HOH
HOH
2117
B
HOH
2118
2
HOH
HOH
2118
B
HOH
2120
2
HOH
HOH
2120
B
HOH
2123
2
HOH
HOH
2123
B
HOH
2124
2
HOH
HOH
2124
B
HOH
2127
2
HOH
HOH
2127
B
HOH
2129
2
HOH
HOH
2129
B
HOH
2130
2
HOH
HOH
2130
B
HOH
2132
2
HOH
HOH
2132
B
HOH
2133
2
HOH
HOH
2133
B
HOH
2134
2
HOH
HOH
2134
B
HOH
2136
2
HOH
HOH
2136
B
HOH
2138
2
HOH
HOH
2138
B
HOH
2141
2
HOH
HOH
2141
B
HOH
2145
2
HOH
HOH
2145
B
n
1
26
A
n
2
27
A
n
3
28
A
n
4
29
A
n
5
30
A
n
6
31
A
n
7
32
A
n
8
33
A
n
9
34
A
n
10
35
A
ARG
36
n
11
ARG
36
A
ASN
37
n
12
ASN
37
A
THR
38
n
13
THR
38
A
ILE
39
n
14
ILE
39
A
HIS
40
n
15
HIS
40
A
GLU
41
n
16
GLU
41
A
PHE
42
n
17
PHE
42
A
LYS
43
n
18
LYS
43
A
LYS
44
n
19
LYS
44
A
SER
45
n
20
SER
45
A
ALA
46
n
21
ALA
46
A
LYS
47
n
22
LYS
47
A
THR
48
n
23
THR
48
A
THR
49
n
24
THR
49
A
LEU
50
n
25
LEU
50
A
ILE
51
n
26
ILE
51
A
LYS
52
n
27
LYS
52
A
ILE
53
n
28
ILE
53
A
ASP
54
n
29
ASP
54
A
PRO
55
n
30
PRO
55
A
ALA
56
n
31
ALA
56
A
LEU
57
n
32
LEU
57
A
LYS
58
n
33
LYS
58
A
ILE
59
n
34
ILE
59
A
LYS
60
n
35
LYS
60
A
THR
61
n
36
THR
61
A
LYS
62
n
37
LYS
62
A
LYS
63
n
38
LYS
63
A
VAL
64
n
39
VAL
64
A
ASN
65
n
40
ASN
65
A
THR
66
n
41
THR
66
A
ALA
67
n
42
ALA
67
A
ASP
68
n
43
ASP
68
A
GLN
69
n
44
GLN
69
A
CYS
70
n
45
CYS
70
A
ALA
71
n
46
ALA
71
A
ASN
72
n
47
ASN
72
A
ARG
73
n
48
ARG
73
A
CYS
74
n
49
CYS
74
A
THR
75
n
50
THR
75
A
ARG
76
n
51
ARG
76
A
ASN
77
n
52
ASN
77
A
LYS
78
n
53
LYS
78
A
GLY
79
n
54
GLY
79
A
LEU
80
n
55
LEU
80
A
PRO
81
n
56
PRO
81
A
PHE
82
n
57
PHE
82
A
THR
83
n
58
THR
83
A
CYS
84
n
59
CYS
84
A
LYS
85
n
60
LYS
85
A
ALA
86
n
61
ALA
86
A
PHE
87
n
62
PHE
87
A
VAL
88
n
63
VAL
88
A
PHE
89
n
64
PHE
89
A
ASP
90
n
65
ASP
90
A
LYS
91
n
66
LYS
91
A
ALA
92
n
67
ALA
92
A
ARG
93
n
68
ARG
93
A
LYS
94
n
69
LYS
94
A
GLN
95
n
70
GLN
95
A
CYS
96
n
71
CYS
96
A
LEU
97
n
72
LEU
97
A
TRP
98
n
73
TRP
98
A
PHE
99
n
74
PHE
99
A
PRO
100
n
75
PRO
100
A
PHE
101
n
76
PHE
101
A
ASN
102
n
77
ASN
102
A
SER
103
n
78
SER
103
A
MET
104
n
79
MET
104
A
SER
105
n
80
SER
105
A
SER
106
n
81
SER
106
A
GLY
107
n
82
GLY
107
A
VAL
108
n
83
VAL
108
A
LYS
109
n
84
LYS
109
A
LYS
110
n
85
LYS
110
A
GLU
111
n
86
GLU
111
A
PHE
112
n
87
PHE
112
A
GLY
113
n
88
GLY
113
A
HIS
114
n
89
HIS
114
A
GLU
115
n
90
GLU
115
A
PHE
116
n
91
PHE
116
A
ASP
117
n
92
ASP
117
A
LEU
118
n
93
LEU
118
A
TYR
119
n
94
TYR
119
A
GLU
120
n
95
GLU
120
A
ASN
121
n
96
ASN
121
A
LYS
122
n
97
LYS
122
A
ASP
123
n
98
ASP
123
A
TYR
124
n
99
TYR
124
A
ILE
125
n
100
ILE
125
A
ARG
126
n
101
ARG
126
A
n
1
26
B
n
2
27
B
n
3
28
B
n
4
29
B
n
5
30
B
n
6
31
B
n
7
32
B
n
8
33
B
n
9
34
B
n
10
35
B
ARG
36
n
11
ARG
36
B
ASN
37
n
12
ASN
37
B
THR
38
n
13
THR
38
B
ILE
39
n
14
ILE
39
B
HIS
40
n
15
HIS
40
B
GLU
41
n
16
GLU
41
B
PHE
42
n
17
PHE
42
B
LYS
43
n
18
LYS
43
B
LYS
44
n
19
LYS
44
B
SER
45
n
20
SER
45
B
ALA
46
n
21
ALA
46
B
LYS
47
n
22
LYS
47
B
THR
48
n
23
THR
48
B
THR
49
n
24
THR
49
B
LEU
50
n
25
LEU
50
B
ILE
51
n
26
ILE
51
B
LYS
52
n
27
LYS
52
B
ILE
53
n
28
ILE
53
B
ASP
54
n
29
ASP
54
B
PRO
55
n
30
PRO
55
B
ALA
56
n
31
ALA
56
B
LEU
57
n
32
LEU
57
B
LYS
58
n
33
LYS
58
B
ILE
59
n
34
ILE
59
B
LYS
60
n
35
LYS
60
B
THR
61
n
36
THR
61
B
LYS
62
n
37
LYS
62
B
LYS
63
n
38
LYS
63
B
VAL
64
n
39
VAL
64
B
ASN
65
n
40
ASN
65
B
THR
66
n
41
THR
66
B
ALA
67
n
42
ALA
67
B
ASP
68
n
43
ASP
68
B
GLN
69
n
44
GLN
69
B
CYS
70
n
45
CYS
70
B
ALA
71
n
46
ALA
71
B
ASN
72
n
47
ASN
72
B
ARG
73
n
48
ARG
73
B
CYS
74
n
49
CYS
74
B
THR
75
n
50
THR
75
B
ARG
76
n
51
ARG
76
B
ASN
77
n
52
ASN
77
B
LYS
78
n
53
LYS
78
B
GLY
79
n
54
GLY
79
B
LEU
80
n
55
LEU
80
B
PRO
81
n
56
PRO
81
B
PHE
82
n
57
PHE
82
B
THR
83
n
58
THR
83
B
CYS
84
n
59
CYS
84
B
LYS
85
n
60
LYS
85
B
ALA
86
n
61
ALA
86
B
PHE
87
n
62
PHE
87
B
VAL
88
n
63
VAL
88
B
PHE
89
n
64
PHE
89
B
ASP
90
n
65
ASP
90
B
LYS
91
n
66
LYS
91
B
ALA
92
n
67
ALA
92
B
ARG
93
n
68
ARG
93
B
LYS
94
n
69
LYS
94
B
GLN
95
n
70
GLN
95
B
CYS
96
n
71
CYS
96
B
LEU
97
n
72
LEU
97
B
TRP
98
n
73
TRP
98
B
PHE
99
n
74
PHE
99
B
PRO
100
n
75
PRO
100
B
PHE
101
n
76
PHE
101
B
ASN
102
n
77
ASN
102
B
SER
103
n
78
SER
103
B
MET
104
n
79
MET
104
B
SER
105
n
80
SER
105
B
SER
106
n
81
SER
106
B
GLY
107
n
82
GLY
107
B
VAL
108
n
83
VAL
108
B
LYS
109
n
84
LYS
109
B
LYS
110
n
85
LYS
110
B
GLU
111
n
86
GLU
111
B
PHE
112
n
87
PHE
112
B
GLY
113
n
88
GLY
113
B
HIS
114
n
89
HIS
114
B
GLU
115
n
90
GLU
115
B
PHE
116
n
91
PHE
116
B
ASP
117
n
92
ASP
117
B
LEU
118
n
93
LEU
118
B
TYR
119
n
94
TYR
119
B
GLU
120
n
95
GLU
120
B
ASN
121
n
96
ASN
121
B
LYS
122
n
97
LYS
122
B
ASP
123
n
98
ASP
123
B
TYR
124
n
99
TYR
124
B
ILE
125
n
100
ILE
125
B
ARG
126
n
101
ARG
126
B
author_defined_assembly
2
dimeric
software_defined_assembly
PISA
1
monomeric
software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
43
A
N
LYS
18
A
O
GLU
120
A
O
GLU
95
A
O
TYR
119
A
O
TYR
94
A
N
PHE
87
A
N
PHE
62
A
N
ASP
90
A
N
ASP
65
A
O
GLN
95
A
O
GLN
70
A
O
TRP
98
A
O
TRP
73
A
N
LYS
60
A
N
LYS
35
B
N
LYS
43
B
N
LYS
18
B
O
GLU
120
B
O
GLU
95
B
O
TYR
119
B
O
TYR
94
B
N
PHE
87
B
N
PHE
62
B
N
ASP
90
B
N
ASP
65
B
O
GLN
95
B
O
GLN
70
B
O
TRP
98
B
O
TRP
73
B
N
LYS
60
B
N
LYS
35
1
A
GLY
26
A
GLY
1
1
Y
1
A
SER
27
A
SER
2
1
Y
1
A
TYR
28
A
TYR
3
1
Y
1
A
ALA
29
A
ALA
4
1
Y
1
A
GLU
30
A
GLU
5
1
Y
1
A
GLY
31
A
GLY
6
1
Y
1
A
GLN
32
A
GLN
7
1
Y
1
A
ARG
33
A
ARG
8
1
Y
1
A
LYS
34
A
LYS
9
1
Y
1
A
ARG
35
A
ARG
10
1
Y
1
B
GLY
26
B
GLY
1
1
Y
1
B
SER
27
B
SER
2
1
Y
1
B
TYR
28
B
TYR
3
1
Y
1
B
ALA
29
B
ALA
4
1
Y
1
B
GLU
30
B
GLU
5
1
Y
1
B
GLY
31
B
GLY
6
1
Y
1
B
GLN
32
B
GLN
7
1
Y
1
B
ARG
33
B
ARG
8
1
Y
1
B
LYS
34
B
LYS
9
1
Y
1
B
ARG
35
B
ARG
10
1
Y
1
A
VAL
64
-129.41
-169.61
1
B
ALA
56
-107.73
43.92
1
B
LYS
62
-174.12
135.48
protein_rep.param
protein.top
water_rep.param
water_rep.top
ion.param
ion.top
22.0
-0.53
0.55
0.00
-0.53
0.00
1.06
The Friedel pairs were used in phasing
0.243
0.005
0.193
0.206
0.193
2.00
34.56
1976
23656
21584
9.2
91.2
RANDOM
416044.98
0.000000
1
RESTRAINED
THROUGHOUT
MOLECULAR REPLACEMENT
PDB entry 1NK1
Engh & Huber
FLAT MODEL
62.2688
0.416442
0.28
0.21
5.00
0.17
0.13
2.00
34.56
145
1641
0
0
1496
0.006
1.3
24.2
0.76
0.215
0.016
0.200
2.02
40
2838
412
6
8.7
78.4
9.5
1.96
50.0
3HMT
23656
23656
0.0
0.0
0.064
0.064
1
14.4
2.8
98.5
0.240
1.96
2.03
2.5
1274
0.240
2.2
87.6
data collection
DND-CAT
refinement
CNS
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
Crystal structure of the N-terminal fragment (28-126) of the human hepatocyte growth factor/scatter factor, trigonal crystal form
1
N
N
1
N
N
2
N
N
2
N
N
A
ASN
37
A
ASN
12
HELX_P
A
HIS
40
A
HIS
15
5
1
4
A
THR
66
A
THR
41
HELX_P
A
ASN
77
A
ASN
52
1
2
12
A
ASP
123
A
ASP
98
HELX_P
A
ILE
125
A
ILE
100
5
3
3
B
ASN
37
B
ASN
12
HELX_P
B
HIS
40
B
HIS
15
5
4
4
B
THR
66
B
THR
41
HELX_P
B
ASN
77
B
ASN
52
1
5
12
B
ASP
123
B
ASP
98
HELX_P
B
ILE
125
B
ILE
100
5
6
3
disulf
2.027
A
CYS
70
A
SG
CYS
45
1_555
A
CYS
96
A
SG
CYS
71
1_555
disulf
2.040
A
CYS
74
A
SG
CYS
49
1_555
A
CYS
84
A
SG
CYS
59
1_555
disulf
2.028
B
CYS
70
B
SG
CYS
45
1_555
B
CYS
96
B
SG
CYS
71
1_555
disulf
2.040
B
CYS
74
B
SG
CYS
49
1_555
B
CYS
84
B
SG
CYS
59
1_555
HORMONE
HGF/SF, hormone/growth factor, Disulfide bond, Glycoprotein, Growth factor, Kringle, Pyrrolidone carboxylic acid, Serine protease homolog, HORMONE
HGF_HUMAN
UNP
1
28
P14210
YAEGQRKRRNTIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSG
VKKEFGHEFDLYENKDYIR
28
126
3HMT
28
126
P14210
A
1
3
101
28
126
3HMT
28
126
P14210
B
1
3
101
1
expression tag
GLY
26
3HMT
A
P14210
UNP
1
1
expression tag
SER
27
3HMT
A
P14210
UNP
2
2
expression tag
GLY
26
3HMT
B
P14210
UNP
1
2
expression tag
SER
27
3HMT
B
P14210
UNP
2
5
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
42
A
PHE
17
A
LYS
52
A
LYS
27
A
VAL
108
A
VAL
83
A
ASN
121
A
ASN
96
A
ALA
86
A
ALA
61
A
ASP
90
A
ASP
65
A
GLN
95
A
GLN
70
A
PHE
99
A
PHE
74
A
LYS
60
A
LYS
35
A
LYS
63
A
LYS
38
B
PHE
42
B
PHE
17
B
LYS
52
B
LYS
27
B
VAL
108
B
VAL
83
B
ASN
121
B
ASN
96
B
ALA
86
B
ALA
61
B
ASP
90
B
ASP
65
B
GLN
95
B
GLN
70
B
PHE
99
B
PHE
74
B
LYS
60
B
LYS
35
B
LYS
63
B
LYS
38
145
P 32