0.017850
0.000000
0.000000
0.000000
0.014635
0.000000
0.000000
0.000000
0.007254
0.00000
0.00000
0.00000
Garcia-Diaz, M.
Bebenek, K.
Larrea, A.A.
Pedersen, L.C.
Kunkel, T.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
56.023
68.328
137.850
C10 H15 N2 O7 P
306.209
n
3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE
2',3'-DIDEOXYTHYMIDINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H17 N2 O13 P3
466.169
n
2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE
DNA OH 3 prime terminus
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
N
N
7
N
C
N
8
N
C
N
9
N
O
N
10
N
N
N
11
N
C
N
12
N
O
N
13
N
C
N
14
N
C
N
15
N
C
N
16
N
C
N
17
S
C
N
18
N
O
N
19
R
C
N
20
N
C
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
N
N
37
S
C
N
38
N
C
N
39
N
O
N
40
N
C
N
41
N
O
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
N
N
50
S
C
N
51
N
C
N
52
N
O
N
53
N
C
N
54
N
C
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
N
N
59
N
N
N
60
N
O
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
N
N
77
S
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
N
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
N
N
94
S
C
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
C
N
99
N
O
N
100
N
O
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
R
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
S
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
R
P
N
124
N
O
N
125
N
O
N
126
N
O
N
127
N
C
N
128
S
C
N
129
N
O
N
130
R
C
N
131
N
N
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
N
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
O
N
143
R
P
N
144
N
O
N
145
N
O
N
146
N
O
N
147
N
P
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
O
N
169
N
P
N
170
N
O
N
171
N
O
N
172
N
O
N
173
N
C
N
174
R
C
N
175
N
O
N
176
S
C
N
177
N
O
N
178
N
C
N
179
R
C
Y
180
N
N
Y
181
N
C
Y
182
N
N
Y
183
N
C
Y
184
N
C
N
185
N
N
Y
186
N
N
Y
187
N
C
Y
188
N
N
Y
189
N
C
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
O
N
205
N
P
N
206
N
O
N
207
N
O
N
208
N
O
N
209
N
C
N
210
R
C
N
211
N
O
N
212
S
C
N
213
N
O
N
214
N
C
N
215
R
C
N
216
N
N
N
217
N
C
N
218
N
O
N
219
N
N
N
220
N
C
N
221
N
N
N
222
N
C
N
223
N
C
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
O
N
239
N
P
N
240
N
O
N
241
N
O
N
242
N
O
N
243
N
C
N
244
R
C
N
245
N
O
N
246
S
C
N
247
N
O
N
248
N
C
N
249
R
C
Y
250
N
N
Y
251
N
C
Y
252
N
N
Y
253
N
C
N
254
N
C
N
255
N
O
N
256
N
N
N
257
N
C
N
258
N
N
N
259
N
N
Y
260
N
C
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
O
N
276
N
P
N
277
N
O
N
278
N
O
N
279
N
O
N
280
N
C
N
281
R
C
N
282
N
O
N
283
S
C
N
284
N
O
N
285
N
C
N
286
R
C
N
287
N
N
N
288
N
C
N
289
N
O
N
290
N
N
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
C
N
312
N
O
N
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
C
N
327
N
C
N
328
N
O
N
329
N
N
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
N
346
N
C
N
347
N
C
N
348
N
O
N
349
N
O
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
N
C
N
362
N
C
N
363
N
O
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
N
Y
377
N
C
Y
378
N
C
Y
379
N
N
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
S
C
N
399
N
C
N
400
N
C
N
401
N
C
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
S
C
N
440
N
C
N
441
N
O
N
442
N
C
N
443
N
C
N
444
N
C
N
445
N
C
N
446
N
N
N
447
N
O
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
N
N
464
S
C
N
465
N
C
N
466
N
O
N
467
N
C
N
468
N
C
N
469
N
S
N
470
N
C
N
471
N
O
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
MG
N
484
N
NA
N
485
N
N
N
486
S
C
N
487
N
C
N
488
N
O
N
489
N
C
Y
490
N
C
Y
491
N
C
Y
492
N
C
Y
493
N
C
Y
494
N
C
Y
495
N
C
N
496
N
O
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
N
N
509
S
C
N
510
N
C
N
511
N
O
N
512
N
C
N
513
N
C
N
514
N
C
N
515
N
O
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
N
N
526
S
C
N
527
N
C
N
528
N
O
N
529
N
C
N
530
N
O
N
531
N
O
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
N
N
540
S
C
N
541
N
C
N
542
N
O
N
543
R
C
N
544
N
O
N
545
N
C
N
546
N
O
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
N
N
557
S
C
N
558
N
C
N
559
N
O
N
560
N
C
Y
561
N
C
Y
562
N
C
Y
563
N
C
Y
564
N
N
Y
565
N
C
Y
566
N
C
Y
567
N
C
Y
568
N
C
Y
569
N
C
N
570
N
O
N
571
N
H
N
572
N
H
N
573
N
H
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
H
N
582
N
H
N
583
N
N
N
584
S
C
N
585
N
C
N
586
N
O
N
587
N
C
Y
588
N
C
Y
589
N
C
Y
590
N
C
Y
591
N
C
Y
592
N
C
Y
593
N
C
N
594
N
O
N
595
N
O
N
596
N
H
N
597
N
H
N
598
N
H
N
599
N
H
N
600
N
H
N
601
N
H
N
602
N
H
N
603
N
H
N
604
N
H
N
605
N
H
N
606
N
H
N
607
N
N
N
608
S
C
N
609
N
C
N
610
N
O
N
611
N
C
N
612
N
C
N
613
N
C
N
614
N
O
N
615
N
H
N
616
N
H
N
617
N
H
N
618
N
H
N
619
N
H
N
620
N
H
N
621
N
H
N
622
N
H
N
623
N
H
N
624
N
H
N
625
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
doub
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
doub
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
doub
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
doub
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
Y
188
N
sing
Y
189
N
sing
Y
190
N
doub
N
191
N
sing
Y
192
N
sing
Y
193
N
sing
Y
194
N
doub
N
195
N
sing
Y
196
N
doub
N
197
N
sing
N
198
N
sing
Y
199
N
sing
Y
200
N
doub
N
201
N
sing
Y
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
sing
Y
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
sing
N
266
N
sing
Y
267
N
doub
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
Y
380
N
sing
Y
381
N
doub
Y
382
N
doub
N
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
doub
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
doub
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
doub
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
Y
488
N
doub
Y
489
N
sing
Y
490
N
sing
N
491
N
sing
Y
492
N
doub
N
493
N
sing
Y
494
N
doub
N
495
N
sing
Y
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
doub
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
doub
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
doub
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
doub
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
Y
557
N
doub
Y
558
N
sing
Y
559
N
sing
N
560
N
sing
Y
561
N
doub
Y
562
N
sing
Y
563
N
sing
N
564
N
sing
Y
565
N
sing
Y
566
N
doub
N
567
N
sing
Y
568
N
doub
N
569
N
sing
Y
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
N
580
N
doub
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
Y
585
N
doub
Y
586
N
sing
Y
587
N
sing
N
588
N
sing
Y
589
N
doub
N
590
N
sing
Y
591
N
doub
N
592
N
sing
Y
593
N
sing
N
594
N
sing
N
595
N
sing
N
596
N
sing
N
597
N
sing
N
598
N
sing
N
599
N
sing
N
600
N
sing
N
601
N
sing
N
602
N
sing
N
603
N
sing
N
604
N
doub
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
sing
N
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
N
613
N
sing
N
614
N
sing
N
615
N
sing
To be Published
0353
Scrunching during DNA repair synthesis
10.2210/pdb3hwt/pdb
pdb_00003hwt
100
1
CCD
2005-07-22
MAR CCD 165 mm
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX-007 HF
37447.688
DNA polymerase lambda
2.7.7.7, 4.2.99.-
UNP residues 242-575
C543A
1
man
polymer
3671.418
5'-D(*CP*GP*GP*CP*AP*AP*AP*TP*AP*CP*TP*G)-3'
1
syn
polymer
1792.230
5'-D(*CP*AP*GP*TP*AP*(2DT))-3'
1
syn
polymer
1191.818
5'-D(P*GP*CP*CP*G)-3'
1
syn
polymer
466.169
2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE
1
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
18.015
water
351
nat
water
Pol Lambda, DNA polymerase kappa, DNA polymerase beta-2, Pol beta2
no
no
MAQPSSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESG
HLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQ
KAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLP
GPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGAKVGPGRVLPTPTEKDVF
RLLGLPYREPAERDW
MAQPSSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESG
HLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQ
KAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLP
GPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGAKVGPGRVLPTPTEKDVF
RLLGLPYREPAERDW
A
polypeptide(L)
no
no
(DC)(DG)(DG)(DC)(DA)(DA)(DA)(DT)(DA)(DC)(DT)(DG)
CGGCAAATACTG
T
polydeoxyribonucleotide
no
yes
(DC)(DA)(DG)(DT)(DA)(2DT)
CAGTAT
P
polydeoxyribonucleotide
no
no
(DG)(DC)(DC)(DG)
GCCG
D
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
BL21(DE3)RILP
sample
POLL
9606
Homo sapiens
562
Escherichia coli
pET
1
2.99
58.88
VAPOR DIFFUSION, HANGING DROP
5.5
19% 2-propanol, ).1 M Na Cacodylate, pH 5.5, Na Citrate 0.2M, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
-16.589
1
19
T
1
D
4
-3.562
T_DC1:DG4_D
1
-1.655
-0.030
0.228
-0.221
0.382
1
19
T
2
D
3
-3.255
T_DG2:DC3_D
2
2.852
-0.169
-0.097
-0.212
12.353
1
19
T
3
D
2
-2.162
T_DG3:DC2_D
3
0.192
-0.183
0.346
-0.032
9.112
1
19
T
4
D
1
-1.967
T_DC4:DG1_D
4
-8.593
0.264
-0.258
-0.127
2.643
1
20
T
7
P
6
2.723
T_DA7:2DT6_P
5
-1.978
-0.033
0.072
-0.195
3.868
1
20
T
8
P
5
1.182
T_DT8:DA5_P
6
-10.140
-0.029
-0.242
-0.079
-9.183
1
20
T
9
P
4
1.463
T_DA9:DT4_P
7
-4.010
-0.027
-0.317
0.044
3.817
1
19
T
10
P
3
-1.917
T_DC10:DG3_P
8
-6.583
0.071
-0.050
-0.030
7.312
1
20
T
11
P
2
3.193
T_DT11:DA2_P
9
-8.773
-0.091
-0.090
-0.030
19.388
1
19
T
12
P
1
-0.711
T_DG12:DC1_P
10
-12.225
-0.159
0.221
-0.096
3.089
28.285
T
T
1
2
9.013
D
D
4
3
2.970
4.370
1.001
0.233
TT_DC1DG2:DC3DG4_DD
1
4.440
-9.157
27.605
-0.473
-1.083
3.155
34.381
T
T
2
3
1.572
D
D
3
2
3.099
0.926
-0.588
0.240
TT_DG2DG3:DC2DC3_DD
2
-4.809
8.161
34.041
0.266
0.273
3.325
37.311
T
T
3
4
8.436
D
D
2
1
3.467
5.373
0.434
-0.950
TT_DG3DC4:DG1DC2_DD
3
3.318
-5.209
36.792
-2.228
-0.219
3.303
31.459
T
T
7
8
4.991
P
P
6
5
3.353
2.702
0.594
-0.685
TT_DA7DT8:DA52DT6_PP
4
1.125
-2.077
31.326
-1.779
-0.881
3.207
38.753
T
T
8
9
16.760
P
P
5
4
3.583
10.976
-0.636
-0.754
TT_DT8DA9:DT4DA5_PP
5
1.909
-2.915
37.176
-2.561
1.206
2.939
31.197
T
T
9
10
7.675
P
P
4
3
3.000
4.114
-0.742
-0.518
TT_DA9DC10:DG3DT4_PP
6
-1.490
2.779
30.896
-1.676
1.121
3.210
30.987
T
T
10
11
4.740
P
P
3
2
3.266
2.528
-0.122
-0.427
TT_DC10DT11:DA2DG3_PP
7
1.745
-3.271
30.838
-1.284
0.562
3.135
34.880
T
T
11
12
22.922
P
P
2
1
3.104
13.400
0.463
0.761
TT_DT11DG12:DC1DA2_PP
8
-1.890
3.233
32.223
-0.751
-1.058
software
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Derived calculations
Refinement description
Database references
Derived calculations
Data collection
Refinement description
1
0
2009-08-25
1
1
2011-07-13
1
2
2013-09-25
1
3
2017-11-01
1
4
2021-10-13
1
5
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2009-06-18
REL
REL
D3T
2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE
MG
MAGNESIUM ION
NA
SODIUM ION
EDO
1,2-ETHANEDIOL
HOH
water
Chemical synthesis
sample
Chemical synthesis
sample
Chemical synthesis
sample
1XSN
PDB ENTRY 1XSN
PDB
experimental model
D3T
338
5
D3T
D3T
576
A
MG
168
6
MG
MG
168
A
NA
169
7
NA
NA
169
A
EDO
2801
8
EDO
EDO
2801
A
TIP
4
9
HOH
HOH
4
A
TIP
5
9
HOH
HOH
5
A
TIP
6
9
HOH
HOH
6
A
TIP
8
9
HOH
HOH
8
A
TIP
10
9
HOH
HOH
10
A
TIP
11
9
HOH
HOH
11
A
TIP
13
9
HOH
HOH
13
A
TIP
15
9
HOH
HOH
15
A
TIP
16
9
HOH
HOH
16
A
TIP
18
9
HOH
HOH
18
A
TIP
19
9
HOH
HOH
19
A
TIP
22
9
HOH
HOH
22
A
TIP
26
9
HOH
HOH
26
A
TIP
28
9
HOH
HOH
28
A
TIP
29
9
HOH
HOH
29
A
TIP
30
9
HOH
HOH
30
A
TIP
31
9
HOH
HOH
31
A
TIP
34
9
HOH
HOH
34
A
TIP
35
9
HOH
HOH
35
A
TIP
37
9
HOH
HOH
37
A
TIP
38
9
HOH
HOH
38
A
TIP
39
9
HOH
HOH
39
A
TIP
40
9
HOH
HOH
40
A
TIP
41
9
HOH
HOH
41
A
TIP
44
9
HOH
HOH
44
A
TIP
46
9
HOH
HOH
46
A
TIP
47
9
HOH
HOH
47
A
TIP
48
9
HOH
HOH
48
A
TIP
51
9
HOH
HOH
51
A
TIP
52
9
HOH
HOH
52
A
TIP
53
9
HOH
HOH
53
A
TIP
57
9
HOH
HOH
57
A
TIP
59
9
HOH
HOH
59
A
TIP
60
9
HOH
HOH
60
A
TIP
62
9
HOH
HOH
62
A
TIP
63
9
HOH
HOH
63
A
TIP
64
9
HOH
HOH
64
A
TIP
66
9
HOH
HOH
66
A
TIP
67
9
HOH
HOH
67
A
TIP
68
9
HOH
HOH
68
A
TIP
70
9
HOH
HOH
70
A
TIP
71
9
HOH
HOH
71
A
TIP
73
9
HOH
HOH
73
A
TIP
74
9
HOH
HOH
74
A
TIP
75
9
HOH
HOH
75
A
TIP
79
9
HOH
HOH
79
A
TIP
80
9
HOH
HOH
80
A
TIP
82
9
HOH
HOH
82
A
TIP
83
9
HOH
HOH
83
A
TIP
84
9
HOH
HOH
84
A
TIP
85
9
HOH
HOH
85
A
TIP
86
9
HOH
HOH
86
A
TIP
90
9
HOH
HOH
90
A
TIP
91
9
HOH
HOH
91
A
TIP
92
9
HOH
HOH
92
A
TIP
95
9
HOH
HOH
95
A
TIP
96
9
HOH
HOH
96
A
TIP
98
9
HOH
HOH
98
A
TIP
99
9
HOH
HOH
99
A
TIP
100
9
HOH
HOH
100
A
TIP
101
9
HOH
HOH
101
A
TIP
103
9
HOH
HOH
103
A
TIP
104
9
HOH
HOH
104
A
TIP
105
9
HOH
HOH
105
A
TIP
106
9
HOH
HOH
106
A
TIP
109
9
HOH
HOH
109
A
TIP
111
9
HOH
HOH
111
A
TIP
114
9
HOH
HOH
114
A
TIP
115
9
HOH
HOH
115
A
TIP
116
9
HOH
HOH
116
A
TIP
118
9
HOH
HOH
118
A
TIP
119
9
HOH
HOH
119
A
TIP
120
9
HOH
HOH
120
A
TIP
121
9
HOH
HOH
121
A
TIP
122
9
HOH
HOH
122
A
TIP
123
9
HOH
HOH
123
A
TIP
124
9
HOH
HOH
124
A
TIP
131
9
HOH
HOH
131
A
TIP
132
9
HOH
HOH
132
A
TIP
135
9
HOH
HOH
135
A
TIP
136
9
HOH
HOH
136
A
TIP
137
9
HOH
HOH
137
A
TIP
138
9
HOH
HOH
138
A
TIP
139
9
HOH
HOH
139
A
TIP
142
9
HOH
HOH
142
A
TIP
143
9
HOH
HOH
143
A
TIP
144
9
HOH
HOH
144
A
TIP
146
9
HOH
HOH
146
A
TIP
147
9
HOH
HOH
147
A
TIP
148
9
HOH
HOH
148
A
TIP
149
9
HOH
HOH
149
A
TIP
150
9
HOH
HOH
150
A
TIP
151
9
HOH
HOH
151
A
TIP
154
9
HOH
HOH
154
A
TIP
155
9
HOH
HOH
155
A
TIP
158
9
HOH
HOH
158
A
TIP
160
9
HOH
HOH
160
A
TIP
161
9
HOH
HOH
161
A
TIP
162
9
HOH
HOH
162
A
TIP
165
9
HOH
HOH
165
A
TIP
170
9
HOH
HOH
170
A
TIP
173
9
HOH
HOH
173
A
TIP
177
9
HOH
HOH
177
A
TIP
179
9
HOH
HOH
179
A
TIP
180
9
HOH
HOH
180
A
TIP
181
9
HOH
HOH
181
A
TIP
182
9
HOH
HOH
182
A
TIP
184
9
HOH
HOH
184
A
TIP
185
9
HOH
HOH
185
A
TIP
186
9
HOH
HOH
186
A
TIP
187
9
HOH
HOH
187
A
TIP
190
9
HOH
HOH
190
A
TIP
192
9
HOH
HOH
192
A
TIP
193
9
HOH
HOH
193
A
TIP
194
9
HOH
HOH
194
A
TIP
195
9
HOH
HOH
195
A
TIP
196
9
HOH
HOH
196
A
TIP
200
9
HOH
HOH
200
A
TIP
201
9
HOH
HOH
201
A
TIP
202
9
HOH
HOH
202
A
TIP
205
9
HOH
HOH
205
A
TIP
206
9
HOH
HOH
206
A
TIP
207
9
HOH
HOH
207
A
TIP
212
9
HOH
HOH
212
A
TIP
213
9
HOH
HOH
213
A
TIP
214
9
HOH
HOH
214
A
TIP
215
9
HOH
HOH
215
A
TIP
216
9
HOH
HOH
216
A
TIP
217
9
HOH
HOH
217
A
TIP
218
9
HOH
HOH
218
A
TIP
221
9
HOH
HOH
221
A
TIP
222
9
HOH
HOH
222
A
TIP
223
9
HOH
HOH
223
A
TIP
224
9
HOH
HOH
224
A
TIP
225
9
HOH
HOH
225
A
TIP
228
9
HOH
HOH
228
A
TIP
230
9
HOH
HOH
230
A
TIP
231
9
HOH
HOH
231
A
TIP
234
9
HOH
HOH
234
A
TIP
235
9
HOH
HOH
235
A
TIP
236
9
HOH
HOH
236
A
TIP
238
9
HOH
HOH
238
A
TIP
239
9
HOH
HOH
239
A
TIP
240
9
HOH
HOH
240
A
TIP
241
9
HOH
HOH
577
A
TIP
242
9
HOH
HOH
578
A
TIP
243
9
HOH
HOH
579
A
TIP
244
9
HOH
HOH
580
A
TIP
245
9
HOH
HOH
581
A
TIP
247
9
HOH
HOH
582
A
TIP
248
9
HOH
HOH
583
A
TIP
251
9
HOH
HOH
584
A
TIP
252
9
HOH
HOH
585
A
TIP
253
9
HOH
HOH
586
A
TIP
254
9
HOH
HOH
587
A
TIP
256
9
HOH
HOH
588
A
TIP
258
9
HOH
HOH
589
A
TIP
259
9
HOH
HOH
590
A
TIP
262
9
HOH
HOH
591
A
TIP
269
9
HOH
HOH
592
A
TIP
270
9
HOH
HOH
593
A
TIP
271
9
HOH
HOH
594
A
TIP
272
9
HOH
HOH
595
A
TIP
273
9
HOH
HOH
596
A
TIP
276
9
HOH
HOH
597
A
TIP
277
9
HOH
HOH
598
A
TIP
278
9
HOH
HOH
599
A
TIP
279
9
HOH
HOH
600
A
TIP
280
9
HOH
HOH
601
A
TIP
281
9
HOH
HOH
602
A
TIP
283
9
HOH
HOH
603
A
TIP
287
9
HOH
HOH
604
A
TIP
288
9
HOH
HOH
605
A
TIP
289
9
HOH
HOH
606
A
TIP
290
9
HOH
HOH
607
A
TIP
291
9
HOH
HOH
608
A
TIP
292
9
HOH
HOH
609
A
TIP
293
9
HOH
HOH
610
A
TIP
295
9
HOH
HOH
611
A
TIP
296
9
HOH
HOH
612
A
TIP
297
9
HOH
HOH
613
A
TIP
298
9
HOH
HOH
614
A
TIP
299
9
HOH
HOH
615
A
TIP
300
9
HOH
HOH
616
A
TIP
305
9
HOH
HOH
617
A
TIP
306
9
HOH
HOH
618
A
TIP
307
9
HOH
HOH
619
A
TIP
309
9
HOH
HOH
620
A
TIP
312
9
HOH
HOH
621
A
TIP
314
9
HOH
HOH
622
A
TIP
315
9
HOH
HOH
623
A
TIP
316
9
HOH
HOH
624
A
TIP
317
9
HOH
HOH
625
A
TIP
318
9
HOH
HOH
626
A
TIP
319
9
HOH
HOH
627
A
TIP
320
9
HOH
HOH
628
A
TIP
321
9
HOH
HOH
629
A
TIP
322
9
HOH
HOH
630
A
TIP
323
9
HOH
HOH
631
A
TIP
327
9
HOH
HOH
632
A
TIP
328
9
HOH
HOH
633
A
TIP
330
9
HOH
HOH
634
A
TIP
332
9
HOH
HOH
635
A
TIP
333
9
HOH
HOH
636
A
TIP
334
9
HOH
HOH
637
A
TIP
338
9
HOH
HOH
638
A
TIP
339
9
HOH
HOH
639
A
TIP
340
9
HOH
HOH
640
A
TIP
341
9
HOH
HOH
641
A
TIP
342
9
HOH
HOH
642
A
TIP
345
9
HOH
HOH
643
A
TIP
346
9
HOH
HOH
644
A
TIP
347
9
HOH
HOH
645
A
TIP
348
9
HOH
HOH
646
A
TIP
349
9
HOH
HOH
647
A
TIP
351
9
HOH
HOH
648
A
TIP
352
9
HOH
HOH
649
A
TIP
354
9
HOH
HOH
650
A
TIP
356
9
HOH
HOH
651
A
TIP
357
9
HOH
HOH
652
A
TIP
358
9
HOH
HOH
653
A
TIP
363
9
HOH
HOH
654
A
TIP
364
9
HOH
HOH
655
A
TIP
365
9
HOH
HOH
656
A
TIP
366
9
HOH
HOH
657
A
TIP
367
9
HOH
HOH
658
A
TIP
368
9
HOH
HOH
659
A
TIP
369
9
HOH
HOH
660
A
TIP
374
9
HOH
HOH
661
A
TIP
375
9
HOH
HOH
662
A
TIP
379
9
HOH
HOH
663
A
TIP
380
9
HOH
HOH
664
A
TIP
381
9
HOH
HOH
665
A
TIP
382
9
HOH
HOH
666
A
TIP
383
9
HOH
HOH
667
A
TIP
385
9
HOH
HOH
668
A
TIP
386
9
HOH
HOH
669
A
TIP
387
9
HOH
HOH
670
A
TIP
388
9
HOH
HOH
671
A
TIP
391
9
HOH
HOH
672
A
TIP
392
9
HOH
HOH
673
A
TIP
394
9
HOH
HOH
674
A
TIP
3
9
HOH
HOH
13
T
TIP
14
9
HOH
HOH
14
T
TIP
24
9
HOH
HOH
24
T
TIP
25
9
HOH
HOH
25
T
TIP
33
9
HOH
HOH
33
T
TIP
36
9
HOH
HOH
36
T
TIP
43
9
HOH
HOH
43
T
TIP
49
9
HOH
HOH
49
T
TIP
50
9
HOH
HOH
50
T
TIP
54
9
HOH
HOH
54
T
TIP
56
9
HOH
HOH
56
T
TIP
58
9
HOH
HOH
58
T
TIP
61
9
HOH
HOH
61
T
TIP
65
9
HOH
HOH
65
T
TIP
69
9
HOH
HOH
69
T
TIP
72
9
HOH
HOH
72
T
TIP
77
9
HOH
HOH
77
T
TIP
78
9
HOH
HOH
78
T
TIP
88
9
HOH
HOH
88
T
TIP
89
9
HOH
HOH
89
T
TIP
94
9
HOH
HOH
94
T
TIP
97
9
HOH
HOH
97
T
TIP
107
9
HOH
HOH
107
T
TIP
108
9
HOH
HOH
108
T
TIP
112
9
HOH
HOH
112
T
TIP
113
9
HOH
HOH
113
T
TIP
117
9
HOH
HOH
117
T
TIP
125
9
HOH
HOH
125
T
TIP
127
9
HOH
HOH
127
T
TIP
130
9
HOH
HOH
130
T
TIP
133
9
HOH
HOH
133
T
TIP
141
9
HOH
HOH
141
T
TIP
145
9
HOH
HOH
145
T
TIP
153
9
HOH
HOH
153
T
TIP
159
9
HOH
HOH
159
T
TIP
166
9
HOH
HOH
166
T
TIP
167
9
HOH
HOH
167
T
TIP
171
9
HOH
HOH
171
T
TIP
183
9
HOH
HOH
183
T
TIP
188
9
HOH
HOH
188
T
TIP
197
9
HOH
HOH
197
T
TIP
199
9
HOH
HOH
199
T
TIP
203
9
HOH
HOH
203
T
TIP
210
9
HOH
HOH
210
T
TIP
211
9
HOH
HOH
211
T
TIP
226
9
HOH
HOH
226
T
TIP
233
9
HOH
HOH
233
T
TIP
246
9
HOH
HOH
246
T
TIP
249
9
HOH
HOH
249
T
TIP
260
9
HOH
HOH
260
T
TIP
265
9
HOH
HOH
265
T
TIP
268
9
HOH
HOH
268
T
TIP
303
9
HOH
HOH
303
T
TIP
308
9
HOH
HOH
308
T
TIP
313
9
HOH
HOH
313
T
TIP
362
9
HOH
HOH
362
T
TIP
371
9
HOH
HOH
371
T
TIP
376
9
HOH
HOH
376
T
TIP
378
9
HOH
HOH
378
T
TIP
7
9
HOH
HOH
7
P
TIP
9
9
HOH
HOH
9
P
TIP
12
9
HOH
HOH
12
P
TIP
17
9
HOH
HOH
17
P
TIP
20
9
HOH
HOH
20
P
TIP
21
9
HOH
HOH
21
P
TIP
23
9
HOH
HOH
23
P
TIP
27
9
HOH
HOH
27
P
TIP
32
9
HOH
HOH
32
P
TIP
42
9
HOH
HOH
42
P
TIP
45
9
HOH
HOH
45
P
TIP
55
9
HOH
HOH
55
P
TIP
76
9
HOH
HOH
76
P
TIP
81
9
HOH
HOH
81
P
TIP
87
9
HOH
HOH
87
P
TIP
102
9
HOH
HOH
102
P
TIP
110
9
HOH
HOH
110
P
TIP
129
9
HOH
HOH
129
P
TIP
134
9
HOH
HOH
134
P
TIP
140
9
HOH
HOH
140
P
TIP
156
9
HOH
HOH
156
P
TIP
164
9
HOH
HOH
164
P
TIP
174
9
HOH
HOH
174
P
TIP
198
9
HOH
HOH
198
P
TIP
209
9
HOH
HOH
209
P
TIP
219
9
HOH
HOH
219
P
TIP
227
9
HOH
HOH
227
P
TIP
229
9
HOH
HOH
229
P
TIP
237
9
HOH
HOH
237
P
TIP
257
9
HOH
HOH
257
P
TIP
264
9
HOH
HOH
264
P
TIP
267
9
HOH
HOH
267
P
TIP
325
9
HOH
HOH
325
P
TIP
326
9
HOH
HOH
326
P
TIP
343
9
HOH
HOH
343
P
TIP
360
9
HOH
HOH
360
P
TIP
390
9
HOH
HOH
390
P
TIP
126
9
HOH
HOH
126
D
TIP
128
9
HOH
HOH
128
D
TIP
152
9
HOH
HOH
152
D
TIP
157
9
HOH
HOH
157
D
TIP
189
9
HOH
HOH
189
D
TIP
220
9
HOH
HOH
220
D
TIP
255
9
HOH
HOH
255
D
TIP
324
9
HOH
HOH
324
D
TIP
331
9
HOH
HOH
331
D
TIP
336
9
HOH
HOH
336
D
TIP
337
9
HOH
HOH
337
D
TIP
361
9
HOH
HOH
361
D
TIP
370
9
HOH
HOH
370
D
n
1
241
A
n
2
242
A
n
3
243
A
n
4
244
A
n
5
245
A
n
6
246
A
n
7
247
A
n
8
248
A
n
9
249
A
n
10
250
A
n
11
251
A
n
12
252
A
n
13
253
A
n
14
254
A
n
15
255
A
n
16
256
A
THR
257
n
17
THR
257
A
GLU
258
n
18
GLU
258
A
LYS
259
n
19
LYS
259
A
LEU
260
n
20
LEU
260
A
GLU
261
n
21
GLU
261
A
VAL
262
n
22
VAL
262
A
LEU
263
n
23
LEU
263
A
ALA
264
n
24
ALA
264
A
LYS
265
n
25
LYS
265
A
ALA
266
n
26
ALA
266
A
TYR
267
n
27
TYR
267
A
SER
268
n
28
SER
268
A
VAL
269
n
29
VAL
269
A
GLN
270
n
30
GLN
270
A
GLY
271
n
31
GLY
271
A
ASP
272
n
32
ASP
272
A
LYS
273
n
33
LYS
273
A
TRP
274
n
34
TRP
274
A
ARG
275
n
35
ARG
275
A
ALA
276
n
36
ALA
276
A
LEU
277
n
37
LEU
277
A
GLY
278
n
38
GLY
278
A
TYR
279
n
39
TYR
279
A
ALA
280
n
40
ALA
280
A
LYS
281
n
41
LYS
281
A
ALA
282
n
42
ALA
282
A
ILE
283
n
43
ILE
283
A
ALA
284
n
44
ASN
284
A
ALA
285
n
45
ALA
285
A
LEU
286
n
46
LEU
286
A
LYS
287
n
47
LYS
287
A
ALA
288
n
48
SER
288
A
ALA
289
n
49
PHE
289
A
ALA
290
n
50
HIS
290
A
ALA
291
n
51
LYS
291
A
PRO
292
n
52
PRO
292
A
ALA
293
n
53
VAL
293
A
ALA
294
n
54
THR
294
A
SER
295
n
55
SER
295
A
TYR
296
n
56
TYR
296
A
ALA
297
n
57
GLN
297
A
GLU
298
n
58
GLU
298
A
ALA
299
n
59
ALA
299
A
CYS
300
n
60
CYS
300
A
SER
301
n
61
SER
301
A
ILE
302
n
62
ILE
302
A
PRO
303
n
63
PRO
303
A
GLY
304
n
64
GLY
304
A
ILE
305
n
65
ILE
305
A
GLY
306
n
66
GLY
306
A
LYS
307
n
67
LYS
307
A
ARG
308
n
68
ARG
308
A
MET
309
n
69
MET
309
A
ALA
310
n
70
ALA
310
A
ALA
311
n
71
GLU
311
A
LYS
312
n
72
LYS
312
A
ILE
313
n
73
ILE
313
A
ALA
314
n
74
ILE
314
A
GLU
315
n
75
GLU
315
A
ALA
316
n
76
ILE
316
A
ALA
317
n
77
LEU
317
A
ALA
318
n
78
GLU
318
A
SER
319
n
79
SER
319
A
GLY
320
n
80
GLY
320
A
ALA
321
n
81
HIS
321
A
ALA
322
n
82
LEU
322
A
ALA
323
n
83
ARG
323
A
ALA
324
n
84
LYS
324
A
LEU
325
n
85
LEU
325
A
ALA
326
n
86
ASP
326
A
ALA
327
n
87
HIS
327
A
ILE
328
n
88
ILE
328
A
SER
329
n
89
SER
329
A
GLU
330
n
90
GLU
330
A
SER
331
n
91
SER
331
A
VAL
332
n
92
VAL
332
A
PRO
333
n
93
PRO
333
A
VAL
334
n
94
VAL
334
A
LEU
335
n
95
LEU
335
A
GLU
336
n
96
GLU
336
A
LEU
337
n
97
LEU
337
A
PHE
338
n
98
PHE
338
A
SER
339
n
99
SER
339
A
ASN
340
n
100
ASN
340
A
ILE
341
n
101
ILE
341
A
TRP
342
n
102
TRP
342
A
GLY
343
n
103
GLY
343
A
ALA
344
n
104
ALA
344
A
GLY
345
n
105
GLY
345
A
THR
346
n
106
THR
346
A
LYS
347
n
107
LYS
347
A
THR
348
n
108
THR
348
A
ALA
349
n
109
ALA
349
A
GLN
350
n
110
GLN
350
A
MET
351
n
111
MET
351
A
TRP
352
n
112
TRP
352
A
TYR
353
n
113
TYR
353
A
GLN
354
n
114
GLN
354
A
GLN
355
n
115
GLN
355
A
GLY
356
n
116
GLY
356
A
PHE
357
n
117
PHE
357
A
ARG
358
n
118
ARG
358
A
SER
359
n
119
SER
359
A
LEU
360
n
120
LEU
360
A
GLU
361
n
121
GLU
361
A
ASP
362
n
122
ASP
362
A
ILE
363
n
123
ILE
363
A
ARG
364
n
124
ARG
364
A
SER
365
n
125
SER
365
A
GLN
366
n
126
GLN
366
A
ALA
367
n
127
ALA
367
A
SER
368
n
128
SER
368
A
LEU
369
n
129
LEU
369
A
THR
370
n
130
THR
370
A
THR
371
n
131
THR
371
A
GLN
372
n
132
GLN
372
A
GLN
373
n
133
GLN
373
A
ALA
374
n
134
ALA
374
A
ILE
375
n
135
ILE
375
A
GLY
376
n
136
GLY
376
A
LEU
377
n
137
LEU
377
A
LYS
378
n
138
LYS
378
A
HIS
379
n
139
HIS
379
A
TYR
380
n
140
TYR
380
A
SER
381
n
141
SER
381
A
ASP
382
n
142
ASP
382
A
PHE
383
n
143
PHE
383
A
LEU
384
n
144
LEU
384
A
GLU
385
n
145
GLU
385
A
ARG
386
n
146
ARG
386
A
MET
387
n
147
MET
387
A
PRO
388
n
148
PRO
388
A
ARG
389
n
149
ARG
389
A
ALA
390
n
150
GLU
390
A
GLU
391
n
151
GLU
391
A
ALA
392
n
152
ALA
392
A
THR
393
n
153
THR
393
A
GLU
394
n
154
GLU
394
A
ILE
395
n
155
ILE
395
A
GLU
396
n
156
GLU
396
A
GLN
397
n
157
GLN
397
A
THR
398
n
158
THR
398
A
VAL
399
n
159
VAL
399
A
GLN
400
n
160
GLN
400
A
LYS
401
n
161
LYS
401
A
ALA
402
n
162
ALA
402
A
ALA
403
n
163
ALA
403
A
GLN
404
n
164
GLN
404
A
ALA
405
n
165
ALA
405
A
PHE
406
n
166
PHE
406
A
ASN
407
n
167
ASN
407
A
SER
408
n
168
SER
408
A
GLY
409
n
169
GLY
409
A
LEU
410
n
170
LEU
410
A
LEU
411
n
171
LEU
411
A
CYS
412
n
172
CYS
412
A
VAL
413
n
173
VAL
413
A
ALA
414
n
174
ALA
414
A
CYS
415
n
175
CYS
415
A
GLY
416
n
176
GLY
416
A
SER
417
n
177
SER
417
A
TYR
418
n
178
TYR
418
A
ARG
419
n
179
ARG
419
A
ARG
420
n
180
ARG
420
A
GLY
421
n
181
GLY
421
A
LYS
422
n
182
LYS
422
A
ALA
423
n
183
ALA
423
A
THR
424
n
184
THR
424
A
CYS
425
n
185
CYS
425
A
GLY
426
n
186
GLY
426
A
ASP
427
n
187
ASP
427
A
VAL
428
n
188
VAL
428
A
ASP
429
n
189
ASP
429
A
VAL
430
n
190
VAL
430
A
LEU
431
n
191
LEU
431
A
ILE
432
n
192
ILE
432
A
THR
433
n
193
THR
433
A
HIS
434
n
194
HIS
434
A
PRO
435
n
195
PRO
435
A
ASP
436
n
196
ASP
436
A
GLY
437
n
197
GLY
437
A
ALA
438
n
198
ARG
438
A
ALA
439
n
199
SER
439
A
HIS
440
n
200
HIS
440
A
ALA
441
n
201
ARG
441
A
GLY
442
n
202
GLY
442
A
ILE
443
n
203
ILE
443
A
PHE
444
n
204
PHE
444
A
SER
445
n
205
SER
445
A
ALA
446
n
206
ARG
446
A
LEU
447
n
207
LEU
447
A
LEU
448
n
208
LEU
448
A
ALA
449
n
209
ASP
449
A
SER
450
n
210
SER
450
A
LEU
451
n
211
LEU
451
A
ARG
452
n
212
ARG
452
A
ALA
453
n
213
GLN
453
A
GLU
454
n
214
GLU
454
A
GLY
455
n
215
GLY
455
A
PHE
456
n
216
PHE
456
A
LEU
457
n
217
LEU
457
A
THR
458
n
218
THR
458
A
ASP
459
n
219
ASP
459
A
ASP
460
n
220
ASP
460
A
LEU
461
n
221
LEU
461
A
VAL
462
n
222
VAL
462
A
SER
463
n
223
SER
463
A
GLN
464
n
224
GLN
464
A
GLU
465
n
225
GLU
465
A
GLU
466
n
226
GLU
466
A
ASN
467
n
227
ASN
467
A
GLY
468
n
228
GLY
468
A
ALA
469
n
229
GLN
469
A
GLN
470
n
230
GLN
470
A
GLN
471
n
231
GLN
471
A
LYS
472
n
232
LYS
472
A
TYR
473
n
233
TYR
473
A
LEU
474
n
234
LEU
474
A
GLY
475
n
235
GLY
475
A
VAL
476
n
236
VAL
476
A
CYS
477
n
237
CYS
477
A
ARG
478
n
238
ARG
478
A
LEU
479
n
239
LEU
479
A
PRO
480
n
240
PRO
480
A
GLY
481
n
241
GLY
481
A
PRO
482
n
242
PRO
482
A
GLY
483
n
243
GLY
483
A
ARG
484
n
244
ARG
484
A
ARG
485
n
245
ARG
485
A
HIS
486
n
246
HIS
486
A
ARG
487
n
247
ARG
487
A
ARG
488
n
248
ARG
488
A
LEU
489
n
249
LEU
489
A
ASP
490
n
250
ASP
490
A
ILE
491
n
251
ILE
491
A
ILE
492
n
252
ILE
492
A
VAL
493
n
253
VAL
493
A
VAL
494
n
254
VAL
494
A
PRO
495
n
255
PRO
495
A
TYR
496
n
256
TYR
496
A
SER
497
n
257
SER
497
A
GLU
498
n
258
GLU
498
A
PHE
499
n
259
PHE
499
A
ALA
500
n
260
ALA
500
A
CYS
501
n
261
CYS
501
A
ALA
502
n
262
ALA
502
A
LEU
503
n
263
LEU
503
A
LEU
504
n
264
LEU
504
A
TYR
505
n
265
TYR
505
A
PHE
506
n
266
PHE
506
A
THR
507
n
267
THR
507
A
GLY
508
n
268
GLY
508
A
SER
509
n
269
SER
509
A
ALA
510
n
270
ALA
510
A
HIS
511
n
271
HIS
511
A
PHE
512
n
272
PHE
512
A
ASN
513
n
273
ASN
513
A
ARG
514
n
274
ARG
514
A
SER
515
n
275
SER
515
A
MET
516
n
276
MET
516
A
ARG
517
n
277
ARG
517
A
ALA
518
n
278
ALA
518
A
LEU
519
n
279
LEU
519
A
ALA
520
n
280
ALA
520
A
LYS
521
n
281
LYS
521
A
THR
522
n
282
THR
522
A
LYS
523
n
283
LYS
523
A
GLY
524
n
284
GLY
524
A
MET
525
n
285
MET
525
A
SER
526
n
286
SER
526
A
LEU
527
n
287
LEU
527
A
SER
528
n
288
SER
528
A
GLU
529
n
289
GLU
529
A
HIS
530
n
290
HIS
530
A
ALA
531
n
291
ALA
531
A
LEU
532
n
292
LEU
532
A
SER
533
n
293
SER
533
A
THR
534
n
294
THR
534
A
ALA
535
n
295
ALA
535
A
VAL
536
n
296
VAL
536
A
VAL
537
n
297
VAL
537
A
ARG
538
n
298
ARG
538
A
ASN
539
n
299
ASN
539
A
THR
540
n
300
THR
540
A
ALA
541
n
301
HIS
541
A
GLY
542
n
302
GLY
542
A
ALA
543
n
303
ALA
543
A
LYS
544
n
304
LYS
544
A
ALA
545
n
305
VAL
545
A
GLY
546
n
306
GLY
546
A
PRO
547
n
307
PRO
547
A
GLY
548
n
308
GLY
548
A
ARG
549
n
309
ARG
549
A
VAL
550
n
310
VAL
550
A
LEU
551
n
311
LEU
551
A
PRO
552
n
312
PRO
552
A
THR
553
n
313
THR
553
A
PRO
554
n
314
PRO
554
A
THR
555
n
315
THR
555
A
GLU
556
n
316
GLU
556
A
LYS
557
n
317
LYS
557
A
ASP
558
n
318
ASP
558
A
VAL
559
n
319
VAL
559
A
PHE
560
n
320
PHE
560
A
ARG
561
n
321
ARG
561
A
LEU
562
n
322
LEU
562
A
LEU
563
n
323
LEU
563
A
GLY
564
n
324
GLY
564
A
LEU
565
n
325
LEU
565
A
PRO
566
n
326
PRO
566
A
TYR
567
n
327
TYR
567
A
ARG
568
n
328
ARG
568
A
ALA
569
n
329
GLU
569
A
PRO
570
n
330
PRO
570
A
ALA
571
n
331
ALA
571
A
GLU
572
n
332
GLU
572
A
ARG
573
n
333
ARG
573
A
ASP
574
n
334
ASP
574
A
TRP
575
n
335
TRP
575
A
DC
1
n
1
DC
1
T
DG
2
n
2
DG
2
T
DG
3
n
3
DG
3
T
DC
4
n
4
DC
4
T
DA
5
n
5
DA
5
T
DA
6
n
6
DA
6
T
DA
7
n
7
DA
7
T
DT
8
n
8
DT
8
T
DA
9
n
9
DA
9
T
DC
10
n
10
DC
10
T
DT
11
n
11
DT
11
T
DG
12
n
12
DG
12
T
DC
1
n
1
DC
1
P
DA
2
n
2
DA
2
P
DG
3
n
3
DG
3
P
DT
4
n
4
DT
4
P
DA
5
n
5
DA
5
P
2DT
6
n
6
2DT
6
P
DG
1
n
1
DG
1
D
DC
2
n
2
DC
2
D
DC
3
n
3
DC
3
D
DG
4
n
4
DG
4
D
author_and_software_defined_assembly
PISA
4
tetrameric
6260
-32
16960
A
HOH
121
I
O
HOH
1_555
A
MG
168
F
MG
MG
1_555
A
ASP
427
A
OD2
ASP
187
1_555
88.2
A
HOH
121
I
O
HOH
1_555
A
MG
168
F
MG
MG
1_555
A
ASP
429
A
OD2
ASP
189
1_555
90.7
A
ASP
427
A
OD2
ASP
187
1_555
A
MG
168
F
MG
MG
1_555
A
ASP
429
A
OD2
ASP
189
1_555
93.5
A
HOH
121
I
O
HOH
1_555
A
MG
168
F
MG
MG
1_555
A
D3T
576
E
O1A
D3T
1_555
173.6
A
ASP
427
A
OD2
ASP
187
1_555
A
MG
168
F
MG
MG
1_555
A
D3T
576
E
O1A
D3T
1_555
97.6
A
ASP
429
A
OD2
ASP
189
1_555
A
MG
168
F
MG
MG
1_555
A
D3T
576
E
O1A
D3T
1_555
91.4
A
HOH
121
I
O
HOH
1_555
A
MG
168
F
MG
MG
1_555
A
D3T
576
E
O1B
D3T
1_555
88.3
A
ASP
427
A
OD2
ASP
187
1_555
A
MG
168
F
MG
MG
1_555
A
D3T
576
E
O1B
D3T
1_555
170.6
A
ASP
429
A
OD2
ASP
189
1_555
A
MG
168
F
MG
MG
1_555
A
D3T
576
E
O1B
D3T
1_555
95.3
A
D3T
576
E
O1A
D3T
1_555
A
MG
168
F
MG
MG
1_555
A
D3T
576
E
O1B
D3T
1_555
85.6
A
HOH
121
I
O
HOH
1_555
A
MG
168
F
MG
MG
1_555
A
D3T
576
E
O3G
D3T
1_555
92.4
A
ASP
427
A
OD2
ASP
187
1_555
A
MG
168
F
MG
MG
1_555
A
D3T
576
E
O3G
D3T
1_555
89.7
A
ASP
429
A
OD2
ASP
189
1_555
A
MG
168
F
MG
MG
1_555
A
D3T
576
E
O3G
D3T
1_555
175.6
A
D3T
576
E
O1A
D3T
1_555
A
MG
168
F
MG
MG
1_555
A
D3T
576
E
O3G
D3T
1_555
85.1
A
D3T
576
E
O1B
D3T
1_555
A
MG
168
F
MG
MG
1_555
A
D3T
576
E
O3G
D3T
1_555
81.7
A
HOH
132
I
O
HOH
1_555
A
NA
169
G
NA
NA
1_555
A
SER
339
A
A
O
SER
99
1_555
91.8
A
HOH
132
I
O
HOH
1_555
A
NA
169
G
NA
NA
1_555
A
SER
339
B
A
O
SER
99
1_555
88.2
A
SER
339
A
A
O
SER
99
1_555
A
NA
169
G
NA
NA
1_555
A
SER
339
B
A
O
SER
99
1_555
5.1
A
HOH
132
I
O
HOH
1_555
A
NA
169
G
NA
NA
1_555
A
ILE
341
A
O
ILE
101
1_555
88.5
A
SER
339
A
A
O
SER
99
1_555
A
NA
169
G
NA
NA
1_555
A
ILE
341
A
O
ILE
101
1_555
95.1
A
SER
339
B
A
O
SER
99
1_555
A
NA
169
G
NA
NA
1_555
A
ILE
341
A
O
ILE
101
1_555
98.7
A
HOH
132
I
O
HOH
1_555
A
NA
169
G
NA
NA
1_555
A
ALA
344
A
O
ALA
104
1_555
172.5
A
SER
339
A
A
O
SER
99
1_555
A
NA
169
G
NA
NA
1_555
A
ALA
344
A
O
ALA
104
1_555
84.7
A
SER
339
B
A
O
SER
99
1_555
A
NA
169
G
NA
NA
1_555
A
ALA
344
A
O
ALA
104
1_555
88.7
A
ILE
341
A
O
ILE
101
1_555
A
NA
169
G
NA
NA
1_555
A
ALA
344
A
O
ALA
104
1_555
85.2
A
HOH
132
I
O
HOH
1_555
A
NA
169
G
NA
NA
1_555
P
DA
5
C
OP1
DA
5
1_555
91.7
A
SER
339
A
A
O
SER
99
1_555
A
NA
169
G
NA
NA
1_555
P
DA
5
C
OP1
DA
5
1_555
164.4
A
SER
339
B
A
O
SER
99
1_555
A
NA
169
G
NA
NA
1_555
P
DA
5
C
OP1
DA
5
1_555
161.1
A
ILE
341
A
O
ILE
101
1_555
A
NA
169
G
NA
NA
1_555
P
DA
5
C
OP1
DA
5
1_555
100.2
A
ALA
344
A
O
ALA
104
1_555
A
NA
169
G
NA
NA
1_555
P
DA
5
C
OP1
DA
5
1_555
93.4
A
HOH
132
I
O
HOH
1_555
A
NA
169
G
NA
NA
1_555
P
HOH
12
K
O
HOH
1_555
90.0
A
SER
339
A
A
O
SER
99
1_555
A
NA
169
G
NA
NA
1_555
P
HOH
12
K
O
HOH
1_555
81.2
A
SER
339
B
A
O
SER
99
1_555
A
NA
169
G
NA
NA
1_555
P
HOH
12
K
O
HOH
1_555
77.5
A
ILE
341
A
O
ILE
101
1_555
A
NA
169
G
NA
NA
1_555
P
HOH
12
K
O
HOH
1_555
175.9
A
ALA
344
A
O
ALA
104
1_555
A
NA
169
G
NA
NA
1_555
P
HOH
12
K
O
HOH
1_555
95.9
P
DA
5
C
OP1
DA
5
1_555
A
NA
169
G
NA
NA
1_555
P
HOH
12
K
O
HOH
1_555
83.6
P
2DT
6
3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE
C
2DT
6
DT
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
MET
387
A
N
MET
147
A
O
CYS
425
A
O
CYS
185
A
N
LEU
411
A
N
LEU
171
A
O
THR
433
A
O
THR
193
A
N
ILE
432
A
N
ILE
192
A
O
ILE
492
A
O
ILE
252
A
O
ARG
487
A
O
ARG
247
A
N
CYS
477
A
N
CYS
237
A
O
LEU
474
A
O
LEU
234
A
N
VAL
462
A
N
VAL
222
A
N
SER
526
A
N
SER
286
A
O
SER
533
A
O
SER
293
A
N
THR
534
A
N
THR
294
A
O
ARG
549
A
O
ARG
309
A
N
VAL
537
A
N
VAL
297
A
O
VAL
545
A
O
VAL
305
1
A
CG
GLU
258
A
CG
GLU
18
1
Y
1
A
CD
GLU
258
A
CD
GLU
18
1
Y
1
A
OE1
GLU
258
A
OE1
GLU
18
1
Y
1
A
OE2
GLU
258
A
OE2
GLU
18
1
Y
1
A
CG
LYS
259
A
CG
LYS
19
1
Y
1
A
CD
LYS
259
A
CD
LYS
19
1
Y
1
A
CE
LYS
259
A
CE
LYS
19
1
Y
1
A
NZ
LYS
259
A
NZ
LYS
19
1
Y
1
A
CG
ASN
284
A
CG
ASN
44
1
Y
1
A
OD1
ASN
284
A
OD1
ASN
44
1
Y
1
A
ND2
ASN
284
A
ND2
ASN
44
1
Y
1
A
OG
SER
288
A
OG
SER
48
1
Y
1
A
CG
PHE
289
A
CG
PHE
49
1
Y
1
A
CD1
PHE
289
A
CD1
PHE
49
1
Y
1
A
CD2
PHE
289
A
CD2
PHE
49
1
Y
1
A
CE1
PHE
289
A
CE1
PHE
49
1
Y
1
A
CE2
PHE
289
A
CE2
PHE
49
1
Y
1
A
CZ
PHE
289
A
CZ
PHE
49
1
Y
1
A
CG
HIS
290
A
CG
HIS
50
1
Y
1
A
ND1
HIS
290
A
ND1
HIS
50
1
Y
1
A
CD2
HIS
290
A
CD2
HIS
50
1
Y
1
A
CE1
HIS
290
A
CE1
HIS
50
1
Y
1
A
NE2
HIS
290
A
NE2
HIS
50
1
Y
1
A
CG
LYS
291
A
CG
LYS
51
1
Y
1
A
CD
LYS
291
A
CD
LYS
51
1
Y
1
A
CE
LYS
291
A
CE
LYS
51
1
Y
1
A
NZ
LYS
291
A
NZ
LYS
51
1
Y
1
A
CG1
VAL
293
A
CG1
VAL
53
1
Y
1
A
CG2
VAL
293
A
CG2
VAL
53
1
Y
1
A
OG1
THR
294
A
OG1
THR
54
1
Y
1
A
CG2
THR
294
A
CG2
THR
54
1
Y
1
A
CG
GLN
297
A
CG
GLN
57
1
Y
1
A
CD
GLN
297
A
CD
GLN
57
1
Y
1
A
OE1
GLN
297
A
OE1
GLN
57
1
Y
1
A
NE2
GLN
297
A
NE2
GLN
57
1
Y
1
A
CG
GLU
311
A
CG
GLU
71
1
Y
1
A
CD
GLU
311
A
CD
GLU
71
1
Y
1
A
OE1
GLU
311
A
OE1
GLU
71
1
Y
1
A
OE2
GLU
311
A
OE2
GLU
71
1
Y
1
A
CG1
ILE
314
A
CG1
ILE
74
1
Y
1
A
CG2
ILE
314
A
CG2
ILE
74
1
Y
1
A
CD1
ILE
314
A
CD1
ILE
74
1
Y
1
A
CG1
ILE
316
A
CG1
ILE
76
1
Y
1
A
CG2
ILE
316
A
CG2
ILE
76
1
Y
1
A
CD1
ILE
316
A
CD1
ILE
76
1
Y
1
A
CG
LEU
317
A
CG
LEU
77
1
Y
1
A
CD1
LEU
317
A
CD1
LEU
77
1
Y
1
A
CD2
LEU
317
A
CD2
LEU
77
1
Y
1
A
CG
GLU
318
A
CG
GLU
78
1
Y
1
A
CD
GLU
318
A
CD
GLU
78
1
Y
1
A
OE1
GLU
318
A
OE1
GLU
78
1
Y
1
A
OE2
GLU
318
A
OE2
GLU
78
1
Y
1
A
CG
HIS
321
A
CG
HIS
81
1
Y
1
A
ND1
HIS
321
A
ND1
HIS
81
1
Y
1
A
CD2
HIS
321
A
CD2
HIS
81
1
Y
1
A
CE1
HIS
321
A
CE1
HIS
81
1
Y
1
A
NE2
HIS
321
A
NE2
HIS
81
1
Y
1
A
CG
LEU
322
A
CG
LEU
82
1
Y
1
A
CD1
LEU
322
A
CD1
LEU
82
1
Y
1
A
CD2
LEU
322
A
CD2
LEU
82
1
Y
1
A
CG
ARG
323
A
CG
ARG
83
1
Y
1
A
CD
ARG
323
A
CD
ARG
83
1
Y
1
A
NE
ARG
323
A
NE
ARG
83
1
Y
1
A
CZ
ARG
323
A
CZ
ARG
83
1
Y
1
A
NH1
ARG
323
A
NH1
ARG
83
1
Y
1
A
NH2
ARG
323
A
NH2
ARG
83
1
Y
1
A
CG
LYS
324
A
CG
LYS
84
1
Y
1
A
CD
LYS
324
A
CD
LYS
84
1
Y
1
A
CE
LYS
324
A
CE
LYS
84
1
Y
1
A
NZ
LYS
324
A
NZ
LYS
84
1
Y
1
A
CG
ASP
326
A
CG
ASP
86
1
Y
1
A
OD1
ASP
326
A
OD1
ASP
86
1
Y
1
A
OD2
ASP
326
A
OD2
ASP
86
1
Y
1
A
CG
HIS
327
A
CG
HIS
87
1
Y
1
A
ND1
HIS
327
A
ND1
HIS
87
1
Y
1
A
CD2
HIS
327
A
CD2
HIS
87
1
Y
1
A
CE1
HIS
327
A
CE1
HIS
87
1
Y
1
A
NE2
HIS
327
A
NE2
HIS
87
1
Y
1
A
CG
GLU
390
A
CG
GLU
150
1
Y
1
A
CD
GLU
390
A
CD
GLU
150
1
Y
1
A
OE1
GLU
390
A
OE1
GLU
150
1
Y
1
A
OE2
GLU
390
A
OE2
GLU
150
1
Y
1
A
CD
GLN
397
A
CD
GLN
157
1
Y
1
A
OE1
GLN
397
A
OE1
GLN
157
1
Y
1
A
NE2
GLN
397
A
NE2
GLN
157
1
Y
1
A
CG
ARG
438
A
CG
ARG
198
1
Y
1
A
CD
ARG
438
A
CD
ARG
198
1
Y
1
A
NE
ARG
438
A
NE
ARG
198
1
Y
1
A
CZ
ARG
438
A
CZ
ARG
198
1
Y
1
A
NH1
ARG
438
A
NH1
ARG
198
1
Y
1
A
NH2
ARG
438
A
NH2
ARG
198
1
Y
1
A
OG
SER
439
A
OG
SER
199
1
Y
1
A
CG
ARG
441
A
CG
ARG
201
1
Y
1
A
CD
ARG
441
A
CD
ARG
201
1
Y
1
A
NE
ARG
441
A
NE
ARG
201
1
Y
1
A
CZ
ARG
441
A
CZ
ARG
201
1
Y
1
A
NH1
ARG
441
A
NH1
ARG
201
1
Y
1
A
NH2
ARG
441
A
NH2
ARG
201
1
Y
1
A
CG
ARG
446
A
CG
ARG
206
1
Y
1
A
CD
ARG
446
A
CD
ARG
206
1
Y
1
A
NE
ARG
446
A
NE
ARG
206
1
Y
1
A
CZ
ARG
446
A
CZ
ARG
206
1
Y
1
A
NH1
ARG
446
A
NH1
ARG
206
1
Y
1
A
NH2
ARG
446
A
NH2
ARG
206
1
Y
1
A
CG
ASP
449
A
CG
ASP
209
1
Y
1
A
OD1
ASP
449
A
OD1
ASP
209
1
Y
1
A
OD2
ASP
449
A
OD2
ASP
209
1
Y
1
A
CG
GLN
453
A
CG
GLN
213
1
Y
1
A
CD
GLN
453
A
CD
GLN
213
1
Y
1
A
OE1
GLN
453
A
OE1
GLN
213
1
Y
1
A
NE2
GLN
453
A
NE2
GLN
213
1
Y
1
A
CG
GLN
469
A
CG
GLN
229
1
Y
1
A
CD
GLN
469
A
CD
GLN
229
1
Y
1
A
OE1
GLN
469
A
OE1
GLN
229
1
Y
1
A
NE2
GLN
469
A
NE2
GLN
229
1
Y
1
A
CG
HIS
541
A
CG
HIS
301
1
Y
1
A
ND1
HIS
541
A
ND1
HIS
301
1
Y
1
A
CD2
HIS
541
A
CD2
HIS
301
1
Y
1
A
CE1
HIS
541
A
CE1
HIS
301
1
Y
1
A
NE2
HIS
541
A
NE2
HIS
301
1
Y
1
A
CG1
VAL
545
A
CG1
VAL
305
1
Y
1
A
CG2
VAL
545
A
CG2
VAL
305
1
Y
1
A
CG
GLU
569
A
CG
GLU
329
1
Y
1
A
CD
GLU
569
A
CD
GLU
329
1
Y
1
A
OE1
GLU
569
A
OE1
GLU
329
1
Y
1
A
OE2
GLU
569
A
OE2
GLU
329
1
Y
1
A
MET
241
A
MET
1
1
Y
1
A
ALA
242
A
ALA
2
1
Y
1
A
GLN
243
A
GLN
3
1
Y
1
A
PRO
244
A
PRO
4
1
Y
1
A
SER
245
A
SER
5
1
Y
1
A
SER
246
A
SER
6
1
Y
1
A
GLN
247
A
GLN
7
1
Y
1
A
LYS
248
A
LYS
8
1
Y
1
A
ALA
249
A
ALA
9
1
Y
1
A
THR
250
A
THR
10
1
Y
1
A
ASN
251
A
ASN
11
1
Y
1
A
HIS
252
A
HIS
12
1
Y
1
A
ASN
253
A
ASN
13
1
Y
1
A
LEU
254
A
LEU
14
1
Y
1
A
HIS
255
A
HIS
15
1
Y
1
A
ILE
256
A
ILE
16
1
Y
1
T
DT
8
0.060
SIDE CHAIN
1
D
DG
1
0.070
SIDE CHAIN
1
A
A
C
N
ILE
ARG
363
364
0.141
0.023
1.336
1.477
B
Y
1
D
D
P
OP3
DG
DG
1
1
-0.088
0.012
1.607
1.519
N
1
A
HIS
290
-47.36
-16.29
1
A
GLU
318
-107.56
-74.10
1
A
ASN
407
-162.43
86.97
1
A
CYS
415
-111.32
-140.42
1
A
ARG
438
-151.69
-34.39
1
A
SER
463
-161.69
92.48
CNS_TOPPAR:protein_rep.param
CNS_TOPPAR:dna-rna_rep.param
CNS_TOPPAR:water_rep.param
T12tern3.par
85.70
42.678
23.13
-7.900
0.000
0.000
13.124
0.000
-5.225
0.261
0.228
1.950
50.000
1823
36678
4.600
93.100
1.00
0.40
1
0.00
MOLECULAR REPLACEMENT
PDB ENTRY 1XSN
72.350
1.950
50.000
351
3213
34
446
2382
1.205
1.500
1.732
2.000
1.931
2.000
2.432
2.500
1.950
50.000
3HWT
38019
0.089
1.066
1
10.283
4.100
96.000
0.399
1.95
2.02
3545
1.187
1
2.80
91.20
0.296
2.02
2.10
3793
1.128
1
3.00
98.00
0.207
2.10
2.20
3884
1.068
1
3.20
99.20
0.154
2.20
2.31
3904
1.024
1
3.40
99.80
0.126
2.31
2.46
3918
1.052
1
3.60
99.80
0.109
2.46
2.65
3913
1.039
1
3.90
99.60
0.120
2.65
2.91
3910
1.091
1
4.50
99.20
0.101
2.91
3.33
3856
1.069
1
4.80
96.90
0.090
3.33
4.20
3667
0.997
1
5.20
91.20
0.070
4.20
50.00
3629
1.075
1
6.60
85.80
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns-online.org/
CNS
package
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.005
data collection
HKL-2000
Ternary complex of DNA polymerase lambda bound to a two nucleotide gapped DNA substrate with a scrunched dA
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
8
N
N
9
N
N
9
N
N
9
N
N
9
N
N
A
THR
257
A
THR
17
HELX_P
A
GLY
271
A
GLY
31
1
1
15
A
ASP
272
A
ASP
32
HELX_P
A
LYS
287
A
LYS
47
1
2
16
A
SER
295
A
SER
55
HELX_P
A
ILE
302
A
ILE
62
1
3
8
A
GLY
306
A
GLY
66
HELX_P
A
GLY
320
A
GLY
80
1
4
15
A
LEU
322
A
LEU
82
HELX_P
A
ILE
328
A
ILE
88
5
5
7
A
SER
331
A
SER
91
HELX_P
A
ASN
340
A
ASN
100
1
6
10
A
GLY
345
A
GLY
105
HELX_P
A
GLN
355
A
GLN
115
1
7
11
A
SER
359
A
SER
119
HELX_P
A
ALA
367
A
ALA
127
1
8
9
A
THR
370
A
THR
130
HELX_P
A
HIS
379
A
HIS
139
1
9
10
A
SER
381
A
SER
141
HELX_P
A
GLU
385
A
GLU
145
5
10
5
A
ARG
389
A
ARG
149
HELX_P
A
ASN
407
A
ASN
167
1
11
19
A
CYS
415
A
CYS
175
HELX_P
A
ARG
420
A
ARG
180
1
12
6
A
ILE
443
A
ILE
203
HELX_P
A
GLU
454
A
GLU
214
1
13
12
A
PRO
495
A
PRO
255
HELX_P
A
SER
497
A
SER
257
5
14
3
A
GLU
498
A
GLU
258
HELX_P
A
GLY
508
A
GLY
268
1
15
11
A
SER
509
A
SER
269
HELX_P
A
LYS
523
A
LYS
283
1
16
15
A
THR
555
A
THR
315
HELX_P
A
LEU
563
A
LEU
323
1
17
9
A
GLU
569
A
GLU
329
HELX_P
A
ASP
574
A
ASP
334
5
18
6
covale
1.611
both
P
DA
5
C
O3'
DA
5
1_555
P
2DT
6
C
P
2DT
6
1_555
metalc
2.137
A
HOH
121
I
O
HOH
1_555
A
MG
168
F
MG
MG
1_555
metalc
2.466
A
HOH
132
I
O
HOH
1_555
A
NA
169
G
NA
NA
1_555
metalc
1.966
A
MG
168
F
MG
MG
1_555
A
ASP
427
A
OD2
ASP
187
1_555
metalc
2.155
A
MG
168
F
MG
MG
1_555
A
ASP
429
A
OD2
ASP
189
1_555
metalc
2.019
A
MG
168
F
MG
MG
1_555
A
D3T
576
E
O1A
D3T
1_555
metalc
1.920
A
MG
168
F
MG
MG
1_555
A
D3T
576
E
O1B
D3T
1_555
metalc
2.180
A
MG
168
F
MG
MG
1_555
A
D3T
576
E
O3G
D3T
1_555
metalc
2.366
A
A
NA
169
G
NA
NA
1_555
A
SER
339
A
O
SER
99
1_555
metalc
2.365
B
A
NA
169
G
NA
NA
1_555
A
SER
339
A
O
SER
99
1_555
metalc
2.554
A
NA
169
G
NA
NA
1_555
A
ILE
341
A
O
ILE
101
1_555
metalc
2.345
A
NA
169
G
NA
NA
1_555
A
ALA
344
A
O
ALA
104
1_555
metalc
2.541
A
NA
169
G
NA
NA
1_555
P
DA
5
C
OP1
DA
5
1_555
metalc
2.468
A
NA
169
G
NA
NA
1_555
P
HOH
12
K
O
HOH
1_555
hydrog
WATSON-CRICK
T
DC
1
B
N3
DC
1
1_555
D
DG
4
D
N1
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
1
B
N4
DC
1
1_555
D
DG
4
D
O6
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
1
B
O2
DC
1
1_555
D
DG
4
D
N2
DG
4
1_555
hydrog
WATSON-CRICK
T
DG
2
B
N1
DG
2
1_555
D
DC
3
D
N3
DC
3
1_555
hydrog
WATSON-CRICK
T
DG
2
B
N2
DG
2
1_555
D
DC
3
D
O2
DC
3
1_555
hydrog
WATSON-CRICK
T
DG
2
B
O6
DG
2
1_555
D
DC
3
D
N4
DC
3
1_555
hydrog
WATSON-CRICK
T
DG
3
B
N1
DG
3
1_555
D
DC
2
D
N3
DC
2
1_555
hydrog
WATSON-CRICK
T
DG
3
B
N2
DG
3
1_555
D
DC
2
D
O2
DC
2
1_555
hydrog
WATSON-CRICK
T
DG
3
B
O6
DG
3
1_555
D
DC
2
D
N4
DC
2
1_555
hydrog
WATSON-CRICK
T
DC
4
B
N3
DC
4
1_555
D
DG
1
D
N1
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
4
B
N4
DC
4
1_555
D
DG
1
D
O6
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
4
B
O2
DC
4
1_555
D
DG
1
D
N2
DG
1
1_555
hydrog
WATSON-CRICK
T
DA
7
B
N1
DA
7
1_555
P
2DT
6
C
N3
2DT
6
1_555
hydrog
WATSON-CRICK
T
DA
7
B
N6
DA
7
1_555
P
2DT
6
C
O4
2DT
6
1_555
hydrog
WATSON-CRICK
T
DT
8
B
N3
DT
8
1_555
P
DA
5
C
N1
DA
5
1_555
hydrog
WATSON-CRICK
T
DT
8
B
O4
DT
8
1_555
P
DA
5
C
N6
DA
5
1_555
hydrog
WATSON-CRICK
T
DA
9
B
N1
DA
9
1_555
P
DT
4
C
N3
DT
4
1_555
hydrog
WATSON-CRICK
T
DA
9
B
N6
DA
9
1_555
P
DT
4
C
O4
DT
4
1_555
hydrog
WATSON-CRICK
T
DC
10
B
N3
DC
10
1_555
P
DG
3
C
N1
DG
3
1_555
hydrog
WATSON-CRICK
T
DC
10
B
N4
DC
10
1_555
P
DG
3
C
O6
DG
3
1_555
hydrog
WATSON-CRICK
T
DC
10
B
O2
DC
10
1_555
P
DG
3
C
N2
DG
3
1_555
hydrog
WATSON-CRICK
T
DT
11
B
N3
DT
11
1_555
P
DA
2
C
N1
DA
2
1_555
hydrog
WATSON-CRICK
T
DT
11
B
O4
DT
11
1_555
P
DA
2
C
N6
DA
2
1_555
hydrog
WATSON-CRICK
T
DG
12
B
N1
DG
12
1_555
P
DC
1
C
N3
DC
1
1_555
hydrog
WATSON-CRICK
T
DG
12
B
N2
DG
12
1_555
P
DC
1
C
O2
DC
1
1_555
hydrog
WATSON-CRICK
T
DG
12
B
O6
DG
12
1_555
P
DC
1
C
N4
DC
1
1_555
TRANSFERASE/DNA
helix-hairpin-helix, DNA damage, DNA repair, DNA replication, DNA synthesis, DNA-binding, DNA-directed DNA polymerase, Lyase, Manganese, Metal-binding, Nucleotidyltransferase, Nucleus, Phosphoprotein, Transferase, TRANSFERASE-DNA COMPLEX
A
GLY
508
A
GLY
268
1
A
SER
509
A
SER
269
1.13
DPOLL_HUMAN
UNP
1
242
Q9UGP5
AQPSSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGH
LRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQK
AAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPG
PGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFR
LLGLPYREPAERDW
3HWT
PDB
2
1
3HWT
CGGCAAATACTG
3HWT
PDB
3
1
3HWT
CAGTAT
3HWT
PDB
4
1
3HWT
GCCG
242
575
3HWT
242
575
Q9UGP5
A
1
2
335
1
12
3HWT
1
12
3HWT
T
2
1
12
1
6
3HWT
1
6
3HWT
P
3
1
6
1
4
3HWT
1
4
3HWT
D
4
1
4
1
expression tag
MET
241
3HWT
A
Q9UGP5
UNP
1
1
CYS
engineered mutation
ALA
543
3HWT
A
Q9UGP5
UNP
543
303
2
5
3
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
MET
387
A
MET
147
A
PRO
388
A
PRO
148
A
THR
424
A
THR
184
A
CYS
425
A
CYS
185
A
LEU
411
A
LEU
171
A
ALA
414
A
ALA
174
A
ASP
427
A
ASP
187
A
THR
433
A
THR
193
A
ARG
487
A
ARG
247
A
VAL
493
A
VAL
253
A
LYS
472
A
LYS
232
A
CYS
477
A
CYS
237
A
LEU
457
A
LEU
217
A
VAL
462
A
VAL
222
A
SER
526
A
SER
286
A
LEU
527
A
LEU
287
A
LEU
532
A
LEU
292
A
THR
534
A
THR
294
A
ARG
549
A
ARG
309
A
VAL
550
A
VAL
310
A
VAL
537
A
VAL
297
A
ARG
538
A
ARG
298
A
LYS
544
A
LYS
304
A
GLY
546
A
GLY
306
BINDING SITE FOR RESIDUE D3T A 576
A
D3T
576
Software
22
BINDING SITE FOR RESIDUE MG A 168
A
MG
168
Software
4
BINDING SITE FOR RESIDUE NA A 169
A
NA
169
Software
6
BINDING SITE FOR RESIDUE EDO A 2801
A
EDO
2801
Software
6
A
HOH
5
I
HOH
22
1_555
A
HOH
26
I
HOH
22
1_555
A
HOH
47
I
HOH
22
1_555
A
HOH
121
I
HOH
22
1_555
A
MG
168
F
MG
22
1_555
A
HOH
222
I
HOH
22
1_555
A
HOH
228
I
HOH
22
1_555
A
ARG
386
A
ARG
146
22
1_555
A
GLY
416
A
GLY
176
22
1_555
A
SER
417
A
SER
177
22
1_555
A
ARG
420
A
ARG
180
22
1_555
A
GLY
426
A
GLY
186
22
1_555
A
ASP
427
A
ASP
187
22
1_555
A
ASP
429
A
ASP
189
22
1_555
A
TYR
505
A
TYR
265
22
1_555
A
PHE
506
A
PHE
266
22
1_555
A
GLY
508
A
GLY
268
22
1_555
A
ALA
510
A
ALA
270
22
1_555
A
ASN
513
A
ASN
273
22
1_555
A
HOH
585
I
HOH
22
1_555
P
2DT
6
C
2DT
6
22
1_555
T
DA
6
B
DA
6
22
1_555
A
HOH
121
I
HOH
4
1_555
A
ASP
427
A
ASP
187
4
1_555
A
ASP
429
A
ASP
189
4
1_555
A
D3T
576
E
D3T
4
1_555
A
HOH
132
I
HOH
6
1_555
A
SER
339
A
SER
99
6
1_555
A
ILE
341
A
ILE
101
6
1_555
A
ALA
344
A
ALA
104
6
1_555
P
DA
5
C
DA
5
6
1_555
P
HOH
12
K
HOH
6
1_555
A
HOH
150
I
HOH
6
1_555
A
THR
348
A
THR
108
6
4_555
A
MET
351
A
MET
111
6
4_555
A
ARG
485
A
ARG
245
6
1_555
A
HOH
604
I
HOH
6
1_555
P
DG
3
C
DG
3
6
4_555
19
P 21 21 21