0.008490
0.000000
0.000000
0.000000
0.020613
0.000000
0.000000
0.000000
0.016088
0.00000
0.00000
0.00000
Huang, R.H.
Sadler, J.E.
Fremont, D.H.
Diener, J.L.
Schaub, R.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
117.781
48.512
62.160
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
R
C
N
452
N
O
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
N
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
N
N
492
S
C
N
493
N
C
N
494
N
O
N
495
N
C
Y
496
N
C
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
N
502
N
O
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
N
N
516
S
C
N
517
N
C
N
518
N
O
N
519
N
C
N
520
N
C
N
521
N
C
N
522
N
O
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
Y
466
N
doub
Y
467
N
sing
Y
468
N
sing
N
469
N
sing
Y
470
N
doub
Y
471
N
sing
Y
472
N
sing
N
473
N
sing
Y
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
Y
494
N
doub
Y
495
N
sing
Y
496
N
sing
N
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
doub
N
501
N
sing
Y
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
UK
Structure
STRUE6
2005
0969-2126
17
1476
1484
10.1016/j.str.2009.09.011
19913482
A structural explanation for the antithrombotic activity of ARC1172, a DNA aptamer that binds von Willebrand factor domain A1.
2009
US
Circulation
0009-7322
116
2678
2686
10.1161/CIRCULATIONAHA.107.724864
18025536
First-in-human evaluation of anti von Willebrand factor therapeutic aptamer ARC1779 in healthy volunteers.
2007
UK
J.Thromb.Haemost.
1538-7933
7
1155
1162
10.1111/j.1538-7836.2009.03459.x
19422452
Inhibition of von Willebrand factor-mediated platelet activation and thrombosis by the anti-von Willebrand factor A1-domain aptamer ARC1779.
2009
10.2210/pdb3hxq/pdb
pdb_00003hxq
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2008-03-17
RIGAKU RAXIS IV
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
23889.627
von Willebrand Factor
von Willebrand factor (VWF) A1 Domain (residues 1260-1468)
1
man
polymer
12884.188
Aptamer ARC1172
Aptamer ARC1172
1
syn
polymer
18.015
water
102
nat
water
vWF, von Willebrand antigen 2, von Willebrand antigen II
no
no
EDISEPPLHDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSE
LRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPH
ANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPPPT
EDISEPPLHDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSE
LRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPH
ANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPPPT
A
polypeptide(L)
no
no
(DG)(DG)(DC)(DG)(DT)(DG)(DC)(DA)(DG)(DT)(DG)(DC)(DC)(DT)(DT)(DC)(DG)(DG)(DC)(DC)
(DG)(DT)(DG)(DC)(DG)(DG)(DT)(DG)(DC)(DC)(DT)(DC)(DC)(DG)(DT)(DC)(DA)(DC)(DG)(DC)
(DC)(DT)
GGCGTGCAGTGCCTTCGGCCGTGCGGTGCCTCCGTCACGCCT
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
9606
Homo sapiens
562
Escherichia coli
1
2.41
49.06
4.6
0.2 M NH4Ac, 0.1 M NaAc, 30% PEG4000, pH 4.6, EVAPORATION, temperature 293K
293
-0.188
1
19
B
1
B
41
-0.177
B_DG1:DC41_B
1
1.239
-0.121
-0.560
-0.288
2.112
1
19
B
2
B
40
-4.222
B_DG2:DC40_B
2
-5.301
0.455
0.330
-0.167
-4.222
1
19
B
3
B
39
-7.645
B_DC3:DG39_B
3
-18.772
0.915
0.594
-0.662
7.394
1
B
4
B
38
8.659
B_DG4:DC38_B
4
-13.941
0.732
0.647
0.158
0.519
1
20
B
5
B
37
-10.450
B_DT5:DA37_B
5
-19.537
0.755
0.627
-0.364
7.504
1
19
B
6
B
36
-2.602
B_DG6:DC36_B
6
-4.729
0.312
0.705
-0.252
12.592
28
B
23
B
35
-18.500
B_DG23:DT35_B
7
-16.889
-1.642
0.555
-0.385
-11.545
1
19
B
24
B
34
-6.650
B_DC24:DG34_B
8
-9.118
-0.077
0.532
-0.019
4.509
1
19
B
25
B
33
-1.281
B_DG25:DC33_B
9
-11.366
-0.228
0.321
-0.217
9.862
1
19
B
26
B
32
-1.159
B_DG26:DC32_B
10
-10.458
0.467
0.814
-0.309
-39.184
9
11
B
8
B
21
7.087
B_DA8:DG21_B
11
-1.441
-6.565
0.874
-4.357
-10.049
1
19
B
9
B
20
0.160
B_DG9:DC20_B
12
2.418
-0.367
-0.497
-0.052
-19.624
1
19
B
11
B
19
-10.356
B_DG11:DC19_B
13
-4.760
0.135
-1.127
-0.072
5.553
B
12
B
18
-10.329
B_DC12:DG18_B
14
-7.506
0.164
-1.408
-0.274
16.450
1
19
B
13
B
17
1.958
B_DC13:DG17_B
15
7.050
0.582
0.104
0.240
34.969
B
22
B
31
-8.887
B_DT22:DT31_B
16
43.257
-2.562
1.859
2.091
44.135
6
B
28
B
30
-75.467
B_DG28:DC30_B
17
-8.917
1.908
-1.247
-3.244
3.218
39.797
B
B
1
2
0.854
B
B
41
40
3.216
0.578
-0.290
0.344
BB_DG1DG2:DC40DC41_BB
1
-7.675
11.341
39.075
0.439
-0.458
3.500
35.353
B
B
2
3
-0.881
B
B
40
39
3.498
-0.535
0.551
-0.935
BB_DG2DC3:DG39DC40_BB
2
-0.706
1.163
35.342
-1.456
-1.019
3.087
35.734
B
B
3
4
1.589
B
B
39
38
3.048
0.974
0.565
0.411
BB_DC3DG4:DC38DG39_BB
3
2.284
-3.726
35.651
0.538
-0.611
3.430
35.201
B
B
4
5
-0.172
B
B
38
37
3.340
-0.104
-1.248
-0.766
BB_DG4DT5:DA37DC38_BB
4
-2.884
4.774
35.086
-1.251
1.618
3.072
32.721
B
B
5
6
-7.280
B
B
37
36
3.017
-4.091
0.766
-0.485
BB_DT5DG6:DC36DA37_BB
5
0.858
-1.526
32.460
-0.202
-1.221
1.067
15.083
B
B
6
23
43.616
B
B
36
35
3.000
10.387
1.324
-1.679
BB_DG6DG23:DT35DC36_BB
6
0.467
-1.963
10.942
-12.559
-4.765
3.922
42.073
B
B
23
24
-4.272
B
B
35
34
3.842
-3.065
-0.202
-1.278
BB_DG23DC24:DG34DT35_BB
7
-0.034
0.047
41.966
-1.404
0.277
2.920
34.585
B
B
24
25
4.225
B
B
34
33
3.075
2.501
-0.907
0.115
BB_DC24DG25:DC33DG34_BB
8
4.953
-8.366
34.151
-0.163
2.231
3.006
38.195
B
B
25
26
0.067
B
B
33
32
3.103
0.044
0.945
0.215
BB_DG25DG26:DC32DC33_BB
9
-3.557
5.443
38.036
0.324
-1.864
3.004
53.963
B
B
8
9
12.660
B
B
21
20
2.782
11.413
-0.316
1.407
BB_DA8DG9:DC20DG21_BB
10
-0.043
0.048
52.831
0.918
0.346
3.813
29.647
B
B
9
11
-0.847
B
B
20
19
3.813
-0.432
0.172
-1.054
BB_DG9DG11:DC19DC20_BB
11
4.392
-8.613
29.324
-1.953
0.749
2.897
37.666
B
B
11
12
-5.903
B
B
19
18
2.776
-3.784
0.449
-1.022
BB_DG11DC12:DG18DC19_BB
12
7.121
-11.109
36.823
-1.152
0.115
1.613
39.272
B
B
12
13
34.096
B
B
18
17
3.293
21.547
0.881
-1.712
BB_DC12DC13:DG17DG18_BB
13
-8.105
12.825
32.035
-4.689
-2.116
1.671
-164.099
B
B
22
28
-61.594
B
B
31
30
-0.572
120.844
5.070
-5.493
BB_DT22DG28:DC30DT31_BB
14
-52.965
-26.996
-140.285
2.691
2.524
pdbx_database_related
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Atomic model
Database references
Database references
Data collection
Database references
Refinement description
1
0
2009-11-17
1
1
2011-07-13
1
2
2011-11-16
1
3
2012-03-21
1
4
2017-11-22
1
5
2023-09-06
_pdbx_database_related.db_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
The same protein and ARC1172 in Space Group P21212.
RCSB
Y
RCSB
2009-06-21
REL
REL
HOH
water
ARC1172 is a DNA oligonucleotides that bind specific target molecules, identified by selection in vitro from large random sequence libraries (termed SELEX: systematic evolution of ligands by exponential enrichment)
sample
AUTHOR STATE THAT THE LAST RESIDUE OF THE DNA POLYMER IS AN INVERTED-DT WHICH IS NOT MODELED DUE TO DISORDER. 3' INVERTED DT IS LINKED TO THE PHOSPHATE GROUP OF ITS PREVIOUS RESIDUE BY THE THIRD CARBON ATOMS OF THE SUGAR RINGS.
3HXO
PDB
experimental model
HOH
1
3
HOH
HOH
1
A
HOH
2
3
HOH
HOH
2
A
HOH
4
3
HOH
HOH
4
A
HOH
7
3
HOH
HOH
7
A
HOH
9
3
HOH
HOH
9
A
HOH
10
3
HOH
HOH
10
A
HOH
11
3
HOH
HOH
11
A
HOH
17
3
HOH
HOH
17
A
HOH
21
3
HOH
HOH
21
A
HOH
22
3
HOH
HOH
22
A
HOH
24
3
HOH
HOH
24
A
HOH
25
3
HOH
HOH
25
A
HOH
33
3
HOH
HOH
33
A
HOH
36
3
HOH
HOH
36
A
HOH
40
3
HOH
HOH
40
A
HOH
41
3
HOH
HOH
41
A
HOH
45
3
HOH
HOH
45
A
HOH
48
3
HOH
HOH
48
A
HOH
49
3
HOH
HOH
49
A
HOH
52
3
HOH
HOH
52
A
HOH
53
3
HOH
HOH
53
A
HOH
56
3
HOH
HOH
56
A
HOH
57
3
HOH
HOH
57
A
HOH
58
3
HOH
HOH
58
A
HOH
64
3
HOH
HOH
64
A
HOH
65
3
HOH
HOH
65
A
HOH
66
3
HOH
HOH
66
A
HOH
69
3
HOH
HOH
69
A
HOH
70
3
HOH
HOH
70
A
HOH
81
3
HOH
HOH
81
A
HOH
83
3
HOH
HOH
83
A
HOH
88
3
HOH
HOH
88
A
HOH
89
3
HOH
HOH
89
A
HOH
90
3
HOH
HOH
90
A
HOH
104
3
HOH
HOH
104
A
HOH
105
3
HOH
HOH
105
A
HOH
106
3
HOH
HOH
106
A
HOH
107
3
HOH
HOH
107
A
HOH
120
3
HOH
HOH
120
A
HOH
121
3
HOH
HOH
121
A
HOH
122
3
HOH
HOH
122
A
HOH
126
3
HOH
HOH
126
A
HOH
132
3
HOH
HOH
132
A
HOH
135
3
HOH
HOH
135
A
HOH
143
3
HOH
HOH
143
A
HOH
148
3
HOH
HOH
148
A
HOH
152
3
HOH
HOH
152
A
HOH
154
3
HOH
HOH
154
A
HOH
158
3
HOH
HOH
158
A
HOH
159
3
HOH
HOH
159
A
HOH
164
3
HOH
HOH
164
A
HOH
166
3
HOH
HOH
166
A
HOH
167
3
HOH
HOH
167
A
HOH
43
3
HOH
HOH
43
B
HOH
44
3
HOH
HOH
44
B
HOH
45
3
HOH
HOH
45
B
HOH
46
3
HOH
HOH
46
B
HOH
47
3
HOH
HOH
47
B
HOH
48
3
HOH
HOH
48
B
HOH
49
3
HOH
HOH
49
B
HOH
50
3
HOH
HOH
50
B
HOH
51
3
HOH
HOH
51
B
HOH
52
3
HOH
HOH
52
B
HOH
53
3
HOH
HOH
53
B
HOH
54
3
HOH
HOH
54
B
HOH
56
3
HOH
HOH
56
B
HOH
57
3
HOH
HOH
57
B
HOH
59
3
HOH
HOH
59
B
HOH
60
3
HOH
HOH
60
B
HOH
62
3
HOH
HOH
62
B
HOH
63
3
HOH
HOH
63
B
HOH
65
3
HOH
HOH
65
B
HOH
66
3
HOH
HOH
66
B
HOH
68
3
HOH
HOH
68
B
HOH
69
3
HOH
HOH
69
B
HOH
71
3
HOH
HOH
71
B
HOH
75
3
HOH
HOH
75
B
HOH
76
3
HOH
HOH
76
B
HOH
78
3
HOH
HOH
78
B
HOH
79
3
HOH
HOH
79
B
HOH
80
3
HOH
HOH
80
B
HOH
84
3
HOH
HOH
84
B
HOH
86
3
HOH
HOH
86
B
HOH
87
3
HOH
HOH
87
B
HOH
93
3
HOH
HOH
93
B
HOH
94
3
HOH
HOH
94
B
HOH
100
3
HOH
HOH
100
B
HOH
115
3
HOH
HOH
115
B
HOH
117
3
HOH
HOH
117
B
HOH
127
3
HOH
HOH
127
B
HOH
128
3
HOH
HOH
128
B
HOH
131
3
HOH
HOH
131
B
HOH
136
3
HOH
HOH
136
B
HOH
137
3
HOH
HOH
137
B
HOH
138
3
HOH
HOH
138
B
HOH
145
3
HOH
HOH
145
B
HOH
151
3
HOH
HOH
151
B
HOH
156
3
HOH
HOH
156
B
HOH
157
3
HOH
HOH
157
B
HOH
160
3
HOH
HOH
160
B
HOH
161
3
HOH
HOH
161
B
HOH
165
3
HOH
HOH
165
B
n
1
497
A
n
2
498
A
n
3
499
A
n
4
500
A
n
5
501
A
PRO
502
n
6
PRO
502
A
PRO
503
n
7
PRO
503
A
LEU
504
n
8
LEU
504
A
HIS
505
n
9
HIS
505
A
ASP
506
n
10
ASP
506
A
PHE
507
n
11
PHE
507
A
TYR
508
n
12
TYR
508
A
CYS
509
n
13
CYS
509
A
SER
510
n
14
SER
510
A
ARG
511
n
15
ARG
511
A
LEU
512
n
16
LEU
512
A
LEU
513
n
17
LEU
513
A
ASP
514
n
18
ASP
514
A
LEU
515
n
19
LEU
515
A
VAL
516
n
20
VAL
516
A
PHE
517
n
21
PHE
517
A
LEU
518
n
22
LEU
518
A
LEU
519
n
23
LEU
519
A
ASP
520
n
24
ASP
520
A
GLY
521
n
25
GLY
521
A
SER
522
n
26
SER
522
A
SER
523
n
27
SER
523
A
ARG
524
n
28
ARG
524
A
LEU
525
n
29
LEU
525
A
SER
526
n
30
SER
526
A
GLU
527
n
31
GLU
527
A
ALA
528
n
32
ALA
528
A
GLU
529
n
33
GLU
529
A
PHE
530
n
34
PHE
530
A
GLU
531
n
35
GLU
531
A
VAL
532
n
36
VAL
532
A
LEU
533
n
37
LEU
533
A
LYS
534
n
38
LYS
534
A
ALA
535
n
39
ALA
535
A
PHE
536
n
40
PHE
536
A
VAL
537
n
41
VAL
537
A
VAL
538
n
42
VAL
538
A
ASP
539
n
43
ASP
539
A
MET
540
n
44
MET
540
A
MET
541
n
45
MET
541
A
GLU
542
n
46
GLU
542
A
ARG
543
n
47
ARG
543
A
LEU
544
n
48
LEU
544
A
ARG
545
n
49
ARG
545
A
ILE
546
n
50
ILE
546
A
SER
547
n
51
SER
547
A
GLN
548
n
52
GLN
548
A
LYS
549
n
53
LYS
549
A
TRP
550
n
54
TRP
550
A
VAL
551
n
55
VAL
551
A
ARG
552
n
56
ARG
552
A
VAL
553
n
57
VAL
553
A
ALA
554
n
58
ALA
554
A
VAL
555
n
59
VAL
555
A
VAL
556
n
60
VAL
556
A
GLU
557
n
61
GLU
557
A
TYR
558
n
62
TYR
558
A
HIS
559
n
63
HIS
559
A
ASP
560
n
64
ASP
560
A
GLY
561
n
65
GLY
561
A
SER
562
n
66
SER
562
A
HIS
563
n
67
HIS
563
A
ALA
564
n
68
ALA
564
A
TYR
565
n
69
TYR
565
A
ILE
566
n
70
ILE
566
A
GLY
567
n
71
GLY
567
A
LEU
568
n
72
LEU
568
A
LYS
569
n
73
LYS
569
A
ASP
570
n
74
ASP
570
A
ARG
571
n
75
ARG
571
A
LYS
572
n
76
LYS
572
A
ARG
573
n
77
ARG
573
A
PRO
574
n
78
PRO
574
A
SER
575
n
79
SER
575
A
GLU
576
n
80
GLU
576
A
LEU
577
n
81
LEU
577
A
ARG
578
n
82
ARG
578
A
ARG
579
n
83
ARG
579
A
ILE
580
n
84
ILE
580
A
ALA
581
n
85
ALA
581
A
SER
582
n
86
SER
582
A
GLN
583
n
87
GLN
583
A
VAL
584
n
88
VAL
584
A
LYS
585
n
89
LYS
585
A
TYR
586
n
90
TYR
586
A
ALA
587
n
91
ALA
587
A
GLY
588
n
92
GLY
588
A
SER
589
n
93
SER
589
A
GLN
590
n
94
GLN
590
A
VAL
591
n
95
VAL
591
A
ALA
592
n
96
ALA
592
A
SER
593
n
97
SER
593
A
THR
594
n
98
THR
594
A
SER
595
n
99
SER
595
A
GLU
596
n
100
GLU
596
A
VAL
597
n
101
VAL
597
A
LEU
598
n
102
LEU
598
A
LYS
599
n
103
LYS
599
A
TYR
600
n
104
TYR
600
A
THR
601
n
105
THR
601
A
LEU
602
n
106
LEU
602
A
PHE
603
n
107
PHE
603
A
GLN
604
n
108
GLN
604
A
ILE
605
n
109
ILE
605
A
PHE
606
n
110
PHE
606
A
SER
607
n
111
SER
607
A
LYS
608
n
112
LYS
608
A
ILE
609
n
113
ILE
609
A
ASP
610
n
114
ASP
610
A
ARG
611
n
115
ARG
611
A
PRO
612
n
116
PRO
612
A
GLU
613
n
117
GLU
613
A
ALA
614
n
118
ALA
614
A
SER
615
n
119
SER
615
A
ARG
616
n
120
ARG
616
A
ILE
617
n
121
ILE
617
A
ALA
618
n
122
ALA
618
A
LEU
619
n
123
LEU
619
A
LEU
620
n
124
LEU
620
A
LEU
621
n
125
LEU
621
A
MET
622
n
126
MET
622
A
ALA
623
n
127
ALA
623
A
SER
624
n
128
SER
624
A
GLN
625
n
129
GLN
625
A
GLU
626
n
130
GLU
626
A
PRO
627
n
131
PRO
627
A
GLN
628
n
132
GLN
628
A
ARG
629
n
133
ARG
629
A
MET
630
n
134
MET
630
A
SER
631
n
135
SER
631
A
ARG
632
n
136
ARG
632
A
ASN
633
n
137
ASN
633
A
PHE
634
n
138
PHE
634
A
VAL
635
n
139
VAL
635
A
ARG
636
n
140
ARG
636
A
TYR
637
n
141
TYR
637
A
VAL
638
n
142
VAL
638
A
GLN
639
n
143
GLN
639
A
GLY
640
n
144
GLY
640
A
LEU
641
n
145
LEU
641
A
LYS
642
n
146
LYS
642
A
LYS
643
n
147
LYS
643
A
LYS
644
n
148
LYS
644
A
LYS
645
n
149
LYS
645
A
VAL
646
n
150
VAL
646
A
ILE
647
n
151
ILE
647
A
VAL
648
n
152
VAL
648
A
ILE
649
n
153
ILE
649
A
PRO
650
n
154
PRO
650
A
VAL
651
n
155
VAL
651
A
GLY
652
n
156
GLY
652
A
ILE
653
n
157
ILE
653
A
GLY
654
n
158
GLY
654
A
PRO
655
n
159
PRO
655
A
HIS
656
n
160
HIS
656
A
ALA
657
n
161
ALA
657
A
ASN
658
n
162
ASN
658
A
LEU
659
n
163
LEU
659
A
LYS
660
n
164
LYS
660
A
GLN
661
n
165
GLN
661
A
ILE
662
n
166
ILE
662
A
ARG
663
n
167
ARG
663
A
LEU
664
n
168
LEU
664
A
ILE
665
n
169
ILE
665
A
GLU
666
n
170
GLU
666
A
LYS
667
n
171
LYS
667
A
GLN
668
n
172
GLN
668
A
ALA
669
n
173
ALA
669
A
PRO
670
n
174
PRO
670
A
GLU
671
n
175
GLU
671
A
ASN
672
n
176
ASN
672
A
LYS
673
n
177
LYS
673
A
ALA
674
n
178
ALA
674
A
PHE
675
n
179
PHE
675
A
VAL
676
n
180
VAL
676
A
LEU
677
n
181
LEU
677
A
SER
678
n
182
SER
678
A
SER
679
n
183
SER
679
A
VAL
680
n
184
VAL
680
A
ASP
681
n
185
ASP
681
A
GLU
682
n
186
GLU
682
A
LEU
683
n
187
LEU
683
A
GLU
684
n
188
GLU
684
A
GLN
685
n
189
GLN
685
A
GLN
686
n
190
GLN
686
A
ARG
687
n
191
ARG
687
A
ASP
688
n
192
ASP
688
A
GLU
689
n
193
GLU
689
A
ILE
690
n
194
ILE
690
A
VAL
691
n
195
VAL
691
A
SER
692
n
196
SER
692
A
TYR
693
n
197
TYR
693
A
LEU
694
n
198
LEU
694
A
CYS
695
n
199
CYS
695
A
ASP
696
n
200
ASP
696
A
LEU
697
n
201
LEU
697
A
ALA
698
n
202
ALA
698
A
PRO
699
n
203
PRO
699
A
GLU
700
n
204
GLU
700
A
ALA
701
n
205
ALA
701
A
PRO
702
n
206
PRO
702
A
n
207
703
A
n
208
704
A
n
209
705
A
DG
1
n
1
DG
1
B
DG
2
n
2
DG
2
B
DC
3
n
3
DC
3
B
DG
4
n
4
DG
4
B
DT
5
n
5
DT
5
B
DG
6
n
6
DG
6
B
DC
7
n
7
DC
7
B
DA
8
n
8
DA
8
B
DG
9
n
9
DG
9
B
DT
10
n
10
DT
10
B
DG
11
n
11
DG
11
B
DC
12
n
12
DC
12
B
DC
13
n
13
DC
13
B
DT
14
n
14
DT
14
B
DT
15
n
15
DT
15
B
DC
16
n
16
DC
16
B
DG
17
n
17
DG
17
B
DG
18
n
18
DG
18
B
DC
19
n
19
DC
19
B
DC
20
n
20
DC
20
B
DG
21
n
21
DG
21
B
DT
22
n
22
DT
22
B
DG
23
n
23
DG
23
B
DC
24
n
24
DC
24
B
DG
25
n
25
DG
25
B
DG
26
n
26
DG
26
B
DT
27
n
27
DT
27
B
DG
28
n
28
DG
28
B
DC
29
n
29
DC
29
B
DC
30
n
30
DC
30
B
DT
31
n
31
DT
31
B
DC
32
n
32
DC
32
B
DC
33
n
33
DC
33
B
DG
34
n
34
DG
34
B
DT
35
n
35
DT
35
B
DC
36
n
36
DC
36
B
DA
37
n
37
DA
37
B
DC
38
n
38
DC
38
B
DG
39
n
39
DG
39
B
DC
40
n
40
DC
40
B
DC
41
n
41
DC
41
B
n
42
42
B
5.9018
-3.5271
1.3573
5.2754
0.3187
4.3206
0.5359
0.6851
0.7053
-0.5113
-0.6896
-0.8395
0.2961
0.6248
0.0007
0.2358
0.1861
0.1163
0.2606
0.1641
0.1301
refined
43.7633
-33.3841
11.8842
X-RAY DIFFRACTION
1.6195
-0.6857
1.8432
2.8935
-1.4326
4.9929
-0.1891
-0.2185
0.1262
0.4617
0.0026
0.8364
0.0117
-1.3092
-0.0252
0.2832
0.2517
0.0036
0.5948
-0.1765
0.5655
refined
15.7255
-16.9845
16.6704
X-RAY DIFFRACTION
-0.0242
-0.0084
0.0216
-0.0524
0.0315
0.2451
0.0308
0.1058
0.0273
-0.0308
0.0383
0.0298
-0.0291
0.0567
-0.0000
0.2972
0.0096
-0.0186
0.2226
0.1193
0.0937
refined
30.1872
-26.7262
14.2476
X-RAY DIFFRACTION
A
0
A
0
X-RAY DIFFRACTION
1
chain A and not (water)
B
0
B
0
X-RAY DIFFRACTION
2
chain B and not (water)
0
0
X-RAY DIFFRACTION
3
water
author_and_software_defined_assembly
PISA
2
dimeric
2110
-2
15330
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
HIS
563
A
O
HIS
67
A
N
GLU
557
A
N
GLU
61
A
O
ARG
552
A
O
ARG
56
A
N
LEU
515
A
N
LEU
19
A
N
ASP
514
A
N
ASP
18
A
O
SER
615
A
O
SER
119
A
N
ALA
618
A
N
ALA
122
A
O
ILE
647
A
O
ILE
151
A
N
PRO
650
A
N
PRO
154
A
O
PHE
675
A
O
PHE
179
1
A
HOH
152
C
HOH
1
A
GLU
497
A
GLU
1
1
Y
1
A
ASP
498
A
ASP
2
1
Y
1
A
ILE
499
A
ILE
3
1
Y
1
A
SER
500
A
SER
4
1
Y
1
A
GLU
501
A
GLU
5
1
Y
1
A
PRO
703
A
PRO
207
1
Y
1
A
PRO
704
A
PRO
208
1
Y
1
A
THR
705
A
THR
209
1
Y
1
B
DT
42
B
DT
42
1
Y
1
2.01
0.30
108.30
110.31
B
B
B
O4'
C1'
N1
DT
DT
DT
10
10
10
N
1
2.07
0.30
108.30
110.37
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
1
-2.89
0.40
104.50
101.61
B
B
B
O4'
C4'
C3'
DG
DG
DG
25
25
25
N
1
1.99
0.30
108.30
110.29
B
B
B
O4'
C1'
N9
DG
DG
DG
34
34
34
N
1
A
TYR
508
-154.98
87.66
1
A
CYS
509
-55.88
103.75
1
A
SER
510
-110.54
76.95
1
A
SER
547
-173.60
144.89
1
A
TRP
550
-147.77
-101.72
1
A
HIS
559
-108.87
-145.39
1
A
LYS
572
-91.96
-155.49
1
A
GLN
583
-85.18
33.79
1
A
ARG
611
-150.97
89.88
1
A
ALA
623
-154.46
19.17
1
A
ASN
658
-56.37
93.44
1
A
ASN
672
-91.86
55.00
170.21
63.419
17.48
0.279
0.221
0.223
2.694
38.0
471
9312
9783
4.810
94.440
1.00
0.47
0.440
1
1.50
MOLECULAR REPLACEMENT
27.150
0.900
1.110
3HXO
ML
FLAT BULK SOLVENT MODEL
44.193
0.311
2.694
38.0
102
2553
0
833
1618
0.003
2587
0.725
3667
22.267
1044
0.042
414
0.002
327
0.3527
0.2935
3.0837
147
2828
89.00
0.2535
0.2129
3.8846
178
3103
96.00
0.2638
0.1997
38.2475
146
3381
98.00
2.694
38.000
3HXQ
9819
0.000
0.08000
1
17.2000
6.400
94.8
0.31600
2.69
2.80
2.800
1
4.00
83.9
data collection
CrystalClear
phasing
MOLREP
refinement
PHENIX
(phenix.refine)
data reduction
HKL-2000
data scaling
HKL-2000
Crystal Structure of Von Willebrand Factor (VWF) A1 Domain in Complex with DNA Aptamer ARC1172, an Inhibitor of VWF-Platelet Binding
1
N
N
2
N
N
3
N
N
3
N
N
A
SER
526
A
SER
30
HELX_P
A
GLU
542
A
GLU
46
1
1
17
A
ARG
573
A
ARG
77
HELX_P
A
GLN
583
A
GLN
87
1
2
11
A
SER
593
A
SER
97
HELX_P
A
ILE
605
A
ILE
109
1
3
13
A
PRO
627
A
PRO
131
HELX_P
A
ARG
632
A
ARG
136
5
4
6
A
ASN
633
A
ASN
137
HELX_P
A
LYS
644
A
LYS
148
1
5
12
A
ASN
658
A
ASN
162
HELX_P
A
LYS
667
A
LYS
171
1
6
10
A
SER
679
A
SER
183
HELX_P
A
GLN
686
A
GLN
190
1
7
8
A
GLN
686
A
GLN
190
HELX_P
A
LEU
697
A
LEU
201
1
8
12
disulf
2.032
A
CYS
509
A
SG
CYS
13
1_555
A
CYS
695
A
SG
CYS
199
1_555
hydrog
WATSON-CRICK
B
DG
1
B
N1
DG
1
1_555
B
DC
41
B
N3
DC
41
1_555
hydrog
WATSON-CRICK
B
DG
1
B
N2
DG
1
1_555
B
DC
41
B
O2
DC
41
1_555
hydrog
WATSON-CRICK
B
DG
1
B
O6
DG
1
1_555
B
DC
41
B
N4
DC
41
1_555
hydrog
WATSON-CRICK
B
DG
2
B
N1
DG
2
1_555
B
DC
40
B
N3
DC
40
1_555
hydrog
WATSON-CRICK
B
DG
2
B
N2
DG
2
1_555
B
DC
40
B
O2
DC
40
1_555
hydrog
WATSON-CRICK
B
DG
2
B
O6
DG
2
1_555
B
DC
40
B
N4
DC
40
1_555
hydrog
WATSON-CRICK
B
DC
3
B
N3
DC
3
1_555
B
DG
39
B
N1
DG
39
1_555
hydrog
WATSON-CRICK
B
DC
3
B
N4
DC
3
1_555
B
DG
39
B
O6
DG
39
1_555
hydrog
WATSON-CRICK
B
DC
3
B
O2
DC
3
1_555
B
DG
39
B
N2
DG
39
1_555
hydrog
DG-DC PAIR
B
DG
4
B
N1
DG
4
1_555
B
DC
38
B
N3
DC
38
1_555
hydrog
WATSON-CRICK
B
DT
5
B
N3
DT
5
1_555
B
DA
37
B
N1
DA
37
1_555
hydrog
WATSON-CRICK
B
DT
5
B
O4
DT
5
1_555
B
DA
37
B
N6
DA
37
1_555
hydrog
WATSON-CRICK
B
DG
6
B
N1
DG
6
1_555
B
DC
36
B
N3
DC
36
1_555
hydrog
WATSON-CRICK
B
DG
6
B
N2
DG
6
1_555
B
DC
36
B
O2
DC
36
1_555
hydrog
WATSON-CRICK
B
DG
6
B
O6
DG
6
1_555
B
DC
36
B
N4
DC
36
1_555
hydrog
TYPE_11_PAIR
B
DA
8
B
N6
DA
8
1_555
B
DG
21
B
N3
DG
21
1_555
hydrog
TYPE_11_PAIR
B
DA
8
B
N7
DA
8
1_555
B
DG
21
B
N2
DG
21
1_555
hydrog
WATSON-CRICK
B
DG
9
B
N1
DG
9
1_555
B
DC
20
B
N3
DC
20
1_555
hydrog
WATSON-CRICK
B
DG
9
B
N2
DG
9
1_555
B
DC
20
B
O2
DC
20
1_555
hydrog
WATSON-CRICK
B
DG
9
B
O6
DG
9
1_555
B
DC
20
B
N4
DC
20
1_555
hydrog
WATSON-CRICK
B
DG
11
B
N1
DG
11
1_555
B
DC
19
B
N3
DC
19
1_555
hydrog
WATSON-CRICK
B
DG
11
B
N2
DG
11
1_555
B
DC
19
B
O2
DC
19
1_555
hydrog
WATSON-CRICK
B
DG
11
B
O6
DG
11
1_555
B
DC
19
B
N4
DC
19
1_555
hydrog
DC-DG PAIR
B
DC
12
B
N4
DC
12
1_555
B
DG
18
B
O6
DG
18
1_555
hydrog
DC-DG PAIR
B
DC
13
B
O2
DC
13
1_555
B
DG
17
B
N2
DG
17
1_555
hydrog
DT-DT MISPAIR
B
DT
22
B
O4
DT
22
1_555
B
DT
31
B
N3
DT
31
1_555
hydrog
TYPE_28_PAIR
B
DG
23
B
N1
DG
23
1_555
B
DT
35
B
O2
DT
35
1_555
hydrog
TYPE_28_PAIR
B
DG
23
B
O6
DG
23
1_555
B
DT
35
B
N3
DT
35
1_555
hydrog
WATSON-CRICK
B
DC
24
B
N3
DC
24
1_555
B
DG
34
B
N1
DG
34
1_555
hydrog
WATSON-CRICK
B
DC
24
B
N4
DC
24
1_555
B
DG
34
B
O6
DG
34
1_555
hydrog
WATSON-CRICK
B
DC
24
B
O2
DC
24
1_555
B
DG
34
B
N2
DG
34
1_555
hydrog
DG-DC PAIR
B
DG
25
B
O6
DG
25
1_555
B
DC
32
B
N4
DC
32
1_555
hydrog
WATSON-CRICK
B
DG
25
B
N1
DG
25
1_555
B
DC
33
B
N3
DC
33
1_555
hydrog
WATSON-CRICK
B
DG
25
B
N2
DG
25
1_555
B
DC
33
B
O2
DC
33
1_555
hydrog
WATSON-CRICK
B
DG
25
B
O6
DG
25
1_555
B
DC
33
B
N4
DC
33
1_555
hydrog
WATSON-CRICK
B
DG
26
B
N1
DG
26
1_555
B
DC
32
B
N3
DC
32
1_555
hydrog
WATSON-CRICK
B
DG
26
B
N2
DG
26
1_555
B
DC
32
B
O2
DC
32
1_555
hydrog
WATSON-CRICK
B
DG
26
B
O6
DG
26
1_555
B
DC
32
B
N4
DC
32
1_555
hydrog
DG-DC PAIR
B
DG
28
B
N2
DG
28
1_555
B
DC
30
B
N3
DC
30
1_555
BLOOD CLOTTING/BLOOD CLOTTING REGULATOR
ARC1779, VWF, Platelet Glycoprotein Ib, Aptamer, ARC1772, Blood coagulation, Cell adhesion, Cleavage on pair of basic residues, Disease mutation, Disulfide bond, Extracellular matrix, Glycoprotein, Hemostasis, Isopeptide bond, Secreted, von Willebrand disease, BLOOD CLOTTING-BLOOD CLOTTING REGULATOR COMPLEX
VWF_HUMAN
UNP
1
1260
P04275
EDISEPPLHDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSE
LRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPH
ANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPPPT
3HXQ
PDB
2
3HXQ
GGCGTGCAGTGCCTTCGGCCGTGCGGDGTGCCTCCGTCACGCCT
1260
1468
3HXQ
497
705
P04275
A
1
1
209
1
42
3HXQ
1
42
3HXQ
B
2
1
42
6
anti-parallel
parallel
parallel
parallel
parallel
A
SER
562
A
SER
66
A
GLY
567
A
GLY
71
A
VAL
551
A
VAL
55
A
TYR
558
A
TYR
62
A
LEU
513
A
LEU
17
A
ASP
520
A
ASP
24
A
SER
615
A
SER
119
A
MET
622
A
MET
126
A
VAL
646
A
VAL
150
A
ILE
653
A
ILE
157
A
PHE
675
A
PHE
179
A
LEU
677
A
LEU
181
18
P 21 21 2