0.028738
0.000000
0.000000
0.000000
0.016404
0.000000
0.000000
0.000000
0.013038
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
34.797
60.962
76.701
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H14 O2
118.174
(4R)-2-METHYLPENTANE-2,4-DIOL
non-polymer
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of Putative signal transduction protein (YP_002936568.1) from Eubacterium rectale at 1.20 A resolution
100
1
Flat collimating mirror, toroid focusing mirror
CCD
2009-05-13
MARMOSAIC 325 mm CCD
Double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.97922
1.0
BL9-2
SSRL
0.97922
SYNCHROTRON
SSRL BEAMLINE BL9-2
22084.646
Putative signal transduction protein
1
man
polymer
118.174
(4R)-2-METHYLPENTANE-2,4-DIOL
1
syn
non-polymer
18.015
water
301
nat
water
no
yes
G(MSE)SYQNANYSAFYVSEPFSESNLGANSTHDFVYYN(MSE)LR(MSE)WKGEDNSFPFNDAHDKTYNVRDGSDWEKT
LKPRLHTRLDNSKNIILFLSSITANSRALREE(MSE)NYGIGTKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKDLWDKLP
AFRDN(MSE)SSVATLHIPCTKSVIISALNNEDF(MSE)VNT(MSE)ADAEKYYYKP
GMSYQNANYSAFYVSEPFSESNLGANSTHDFVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNS
KNIILFLSSITANSRALREEMNYGIGTKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKDLWDKLPAFRDNMSSVATLHIPC
TKSVIISALNNEDFMVNTMADAEKYYYKP
A
391897
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
33656
YP_002936568.1
515619
Eubacterium rectale ATCC 33656
562
Escherichia coli
HK100
Plasmid
SpeedET
1
1.84
33.22
VAPOR DIFFUSION, SITTING DROP
9.0
40.0000% MPD, 0.1M Bicine pH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
pdbx_struct_assembly_auth_evidence
software
software
struct_conn
struct_ref_seq
repository
Initial release
Version format compliance
Author supporting evidence
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2009-07-21
1
1
2011-07-13
1
2
2017-10-25
1
3
2019-07-24
_software.classification
_software.contact_author
_software.contact_author_email
_software.language
_software.location
_software.name
_software.type
_software.version
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
Y
RCSB
Y
RCSB
2009-06-22
REL
REL
MRD
(4R)-2-METHYLPENTANE-2,4-DIOL
HOH
water
THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
MRD
1
2
MRD
MRD
189
A
HOH
190
3
HOH
HOH
190
A
HOH
191
3
HOH
HOH
191
A
HOH
192
3
HOH
HOH
192
A
HOH
193
3
HOH
HOH
193
A
HOH
194
3
HOH
HOH
194
A
HOH
195
3
HOH
HOH
195
A
HOH
196
3
HOH
HOH
196
A
HOH
197
3
HOH
HOH
197
A
HOH
198
3
HOH
HOH
198
A
HOH
199
3
HOH
HOH
199
A
HOH
200
3
HOH
HOH
200
A
HOH
201
3
HOH
HOH
201
A
HOH
202
3
HOH
HOH
202
A
HOH
203
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
205
3
HOH
HOH
205
A
HOH
206
3
HOH
HOH
206
A
HOH
207
3
HOH
HOH
207
A
HOH
208
3
HOH
HOH
208
A
HOH
209
3
HOH
HOH
209
A
HOH
210
3
HOH
HOH
210
A
HOH
211
3
HOH
HOH
211
A
HOH
212
3
HOH
HOH
212
A
HOH
213
3
HOH
HOH
213
A
HOH
214
3
HOH
HOH
214
A
HOH
215
3
HOH
HOH
215
A
HOH
216
3
HOH
HOH
216
A
HOH
217
3
HOH
HOH
217
A
HOH
218
3
HOH
HOH
218
A
HOH
219
3
HOH
HOH
219
A
HOH
220
3
HOH
HOH
220
A
HOH
221
3
HOH
HOH
221
A
HOH
222
3
HOH
HOH
222
A
HOH
223
3
HOH
HOH
223
A
HOH
224
3
HOH
HOH
224
A
HOH
225
3
HOH
HOH
225
A
HOH
226
3
HOH
HOH
226
A
HOH
227
3
HOH
HOH
227
A
HOH
228
3
HOH
HOH
228
A
HOH
229
3
HOH
HOH
229
A
HOH
230
3
HOH
HOH
230
A
HOH
231
3
HOH
HOH
231
A
HOH
232
3
HOH
HOH
232
A
HOH
233
3
HOH
HOH
233
A
HOH
234
3
HOH
HOH
234
A
HOH
235
3
HOH
HOH
235
A
HOH
236
3
HOH
HOH
236
A
HOH
237
3
HOH
HOH
237
A
HOH
238
3
HOH
HOH
238
A
HOH
239
3
HOH
HOH
239
A
HOH
240
3
HOH
HOH
240
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
HOH
243
3
HOH
HOH
243
A
HOH
244
3
HOH
HOH
244
A
HOH
245
3
HOH
HOH
245
A
HOH
246
3
HOH
HOH
246
A
HOH
247
3
HOH
HOH
247
A
HOH
248
3
HOH
HOH
248
A
HOH
249
3
HOH
HOH
249
A
HOH
250
3
HOH
HOH
250
A
HOH
251
3
HOH
HOH
251
A
HOH
252
3
HOH
HOH
252
A
HOH
253
3
HOH
HOH
253
A
HOH
254
3
HOH
HOH
254
A
HOH
255
3
HOH
HOH
255
A
HOH
256
3
HOH
HOH
256
A
HOH
257
3
HOH
HOH
257
A
HOH
258
3
HOH
HOH
258
A
HOH
259
3
HOH
HOH
259
A
HOH
260
3
HOH
HOH
260
A
HOH
261
3
HOH
HOH
261
A
HOH
262
3
HOH
HOH
262
A
HOH
263
3
HOH
HOH
263
A
HOH
264
3
HOH
HOH
264
A
HOH
265
3
HOH
HOH
265
A
HOH
266
3
HOH
HOH
266
A
HOH
267
3
HOH
HOH
267
A
HOH
268
3
HOH
HOH
268
A
HOH
269
3
HOH
HOH
269
A
HOH
270
3
HOH
HOH
270
A
HOH
271
3
HOH
HOH
271
A
HOH
272
3
HOH
HOH
272
A
HOH
273
3
HOH
HOH
273
A
HOH
274
3
HOH
HOH
274
A
HOH
275
3
HOH
HOH
275
A
HOH
276
3
HOH
HOH
276
A
HOH
277
3
HOH
HOH
277
A
HOH
278
3
HOH
HOH
278
A
HOH
279
3
HOH
HOH
279
A
HOH
280
3
HOH
HOH
280
A
HOH
281
3
HOH
HOH
281
A
HOH
282
3
HOH
HOH
282
A
HOH
283
3
HOH
HOH
283
A
HOH
284
3
HOH
HOH
284
A
HOH
285
3
HOH
HOH
285
A
HOH
286
3
HOH
HOH
286
A
HOH
287
3
HOH
HOH
287
A
HOH
288
3
HOH
HOH
288
A
HOH
289
3
HOH
HOH
289
A
HOH
290
3
HOH
HOH
290
A
HOH
291
3
HOH
HOH
291
A
HOH
292
3
HOH
HOH
292
A
HOH
293
3
HOH
HOH
293
A
HOH
294
3
HOH
HOH
294
A
HOH
295
3
HOH
HOH
295
A
HOH
296
3
HOH
HOH
296
A
HOH
297
3
HOH
HOH
297
A
HOH
298
3
HOH
HOH
298
A
HOH
299
3
HOH
HOH
299
A
HOH
300
3
HOH
HOH
300
A
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
2
3
HOH
HOH
303
A
HOH
3
3
HOH
HOH
304
A
HOH
4
3
HOH
HOH
305
A
HOH
5
3
HOH
HOH
306
A
HOH
6
3
HOH
HOH
307
A
HOH
7
3
HOH
HOH
308
A
HOH
8
3
HOH
HOH
309
A
HOH
9
3
HOH
HOH
310
A
HOH
10
3
HOH
HOH
311
A
HOH
11
3
HOH
HOH
312
A
HOH
12
3
HOH
HOH
313
A
HOH
13
3
HOH
HOH
314
A
HOH
14
3
HOH
HOH
315
A
HOH
15
3
HOH
HOH
316
A
HOH
16
3
HOH
HOH
317
A
HOH
17
3
HOH
HOH
318
A
HOH
18
3
HOH
HOH
319
A
HOH
19
3
HOH
HOH
320
A
HOH
20
3
HOH
HOH
321
A
HOH
21
3
HOH
HOH
322
A
HOH
22
3
HOH
HOH
323
A
HOH
23
3
HOH
HOH
324
A
HOH
24
3
HOH
HOH
325
A
HOH
25
3
HOH
HOH
326
A
HOH
26
3
HOH
HOH
327
A
HOH
27
3
HOH
HOH
328
A
HOH
28
3
HOH
HOH
329
A
HOH
29
3
HOH
HOH
330
A
HOH
30
3
HOH
HOH
331
A
HOH
31
3
HOH
HOH
332
A
HOH
32
3
HOH
HOH
333
A
HOH
33
3
HOH
HOH
334
A
HOH
34
3
HOH
HOH
335
A
HOH
35
3
HOH
HOH
336
A
HOH
36
3
HOH
HOH
337
A
HOH
37
3
HOH
HOH
338
A
HOH
38
3
HOH
HOH
339
A
HOH
39
3
HOH
HOH
340
A
HOH
40
3
HOH
HOH
341
A
HOH
41
3
HOH
HOH
342
A
HOH
42
3
HOH
HOH
343
A
HOH
43
3
HOH
HOH
344
A
HOH
44
3
HOH
HOH
345
A
HOH
45
3
HOH
HOH
346
A
HOH
46
3
HOH
HOH
347
A
HOH
47
3
HOH
HOH
348
A
HOH
48
3
HOH
HOH
349
A
HOH
49
3
HOH
HOH
350
A
HOH
50
3
HOH
HOH
351
A
HOH
51
3
HOH
HOH
352
A
HOH
52
3
HOH
HOH
353
A
HOH
53
3
HOH
HOH
354
A
HOH
54
3
HOH
HOH
355
A
HOH
55
3
HOH
HOH
356
A
HOH
56
3
HOH
HOH
357
A
HOH
57
3
HOH
HOH
358
A
HOH
58
3
HOH
HOH
359
A
HOH
59
3
HOH
HOH
360
A
HOH
60
3
HOH
HOH
361
A
HOH
61
3
HOH
HOH
362
A
HOH
62
3
HOH
HOH
363
A
HOH
63
3
HOH
HOH
364
A
HOH
64
3
HOH
HOH
365
A
HOH
65
3
HOH
HOH
366
A
HOH
66
3
HOH
HOH
367
A
HOH
67
3
HOH
HOH
368
A
HOH
68
3
HOH
HOH
369
A
HOH
69
3
HOH
HOH
370
A
HOH
70
3
HOH
HOH
371
A
HOH
71
3
HOH
HOH
372
A
HOH
72
3
HOH
HOH
373
A
HOH
73
3
HOH
HOH
374
A
HOH
74
3
HOH
HOH
375
A
HOH
75
3
HOH
HOH
376
A
HOH
76
3
HOH
HOH
377
A
HOH
77
3
HOH
HOH
378
A
HOH
78
3
HOH
HOH
379
A
HOH
79
3
HOH
HOH
380
A
HOH
80
3
HOH
HOH
381
A
HOH
81
3
HOH
HOH
382
A
HOH
82
3
HOH
HOH
383
A
HOH
83
3
HOH
HOH
384
A
HOH
84
3
HOH
HOH
385
A
HOH
85
3
HOH
HOH
386
A
HOH
86
3
HOH
HOH
387
A
HOH
87
3
HOH
HOH
388
A
HOH
88
3
HOH
HOH
389
A
HOH
89
3
HOH
HOH
390
A
HOH
90
3
HOH
HOH
391
A
HOH
91
3
HOH
HOH
392
A
HOH
92
3
HOH
HOH
393
A
HOH
93
3
HOH
HOH
394
A
HOH
94
3
HOH
HOH
395
A
HOH
95
3
HOH
HOH
396
A
HOH
96
3
HOH
HOH
397
A
HOH
97
3
HOH
HOH
398
A
HOH
98
3
HOH
HOH
399
A
HOH
99
3
HOH
HOH
400
A
HOH
100
3
HOH
HOH
401
A
HOH
101
3
HOH
HOH
402
A
HOH
102
3
HOH
HOH
403
A
HOH
103
3
HOH
HOH
404
A
HOH
104
3
HOH
HOH
405
A
HOH
105
3
HOH
HOH
406
A
HOH
106
3
HOH
HOH
407
A
HOH
107
3
HOH
HOH
408
A
HOH
108
3
HOH
HOH
409
A
HOH
109
3
HOH
HOH
410
A
HOH
110
3
HOH
HOH
411
A
HOH
111
3
HOH
HOH
412
A
HOH
112
3
HOH
HOH
413
A
HOH
113
3
HOH
HOH
414
A
HOH
114
3
HOH
HOH
415
A
HOH
115
3
HOH
HOH
416
A
HOH
116
3
HOH
HOH
417
A
HOH
117
3
HOH
HOH
418
A
HOH
118
3
HOH
HOH
419
A
HOH
119
3
HOH
HOH
420
A
HOH
120
3
HOH
HOH
421
A
HOH
121
3
HOH
HOH
422
A
HOH
122
3
HOH
HOH
423
A
HOH
123
3
HOH
HOH
424
A
HOH
124
3
HOH
HOH
425
A
HOH
125
3
HOH
HOH
426
A
HOH
126
3
HOH
HOH
427
A
HOH
127
3
HOH
HOH
428
A
HOH
128
3
HOH
HOH
429
A
HOH
129
3
HOH
HOH
430
A
HOH
130
3
HOH
HOH
431
A
HOH
131
3
HOH
HOH
432
A
HOH
132
3
HOH
HOH
433
A
HOH
133
3
HOH
HOH
434
A
HOH
134
3
HOH
HOH
435
A
HOH
135
3
HOH
HOH
436
A
HOH
136
3
HOH
HOH
437
A
HOH
137
3
HOH
HOH
438
A
HOH
138
3
HOH
HOH
439
A
HOH
139
3
HOH
HOH
440
A
HOH
140
3
HOH
HOH
441
A
HOH
141
3
HOH
HOH
442
A
HOH
142
3
HOH
HOH
443
A
HOH
143
3
HOH
HOH
444
A
HOH
144
3
HOH
HOH
445
A
HOH
145
3
HOH
HOH
446
A
HOH
146
3
HOH
HOH
447
A
HOH
147
3
HOH
HOH
448
A
HOH
148
3
HOH
HOH
449
A
HOH
149
3
HOH
HOH
450
A
HOH
150
3
HOH
HOH
451
A
HOH
151
3
HOH
HOH
452
A
HOH
152
3
HOH
HOH
453
A
HOH
153
3
HOH
HOH
454
A
HOH
154
3
HOH
HOH
455
A
HOH
155
3
HOH
HOH
456
A
HOH
156
3
HOH
HOH
457
A
HOH
157
3
HOH
HOH
458
A
HOH
158
3
HOH
HOH
459
A
HOH
159
3
HOH
HOH
460
A
HOH
160
3
HOH
HOH
461
A
HOH
161
3
HOH
HOH
462
A
HOH
162
3
HOH
HOH
463
A
HOH
163
3
HOH
HOH
464
A
HOH
164
3
HOH
HOH
465
A
HOH
165
3
HOH
HOH
466
A
HOH
166
3
HOH
HOH
467
A
HOH
167
3
HOH
HOH
468
A
HOH
168
3
HOH
HOH
469
A
HOH
169
3
HOH
HOH
470
A
HOH
170
3
HOH
HOH
471
A
HOH
171
3
HOH
HOH
472
A
HOH
172
3
HOH
HOH
473
A
HOH
173
3
HOH
HOH
474
A
HOH
174
3
HOH
HOH
475
A
HOH
175
3
HOH
HOH
476
A
HOH
176
3
HOH
HOH
477
A
HOH
177
3
HOH
HOH
478
A
HOH
178
3
HOH
HOH
479
A
HOH
179
3
HOH
HOH
480
A
HOH
180
3
HOH
HOH
481
A
HOH
181
3
HOH
HOH
482
A
HOH
182
3
HOH
HOH
483
A
HOH
183
3
HOH
HOH
484
A
HOH
184
3
HOH
HOH
485
A
HOH
185
3
HOH
HOH
486
A
HOH
186
3
HOH
HOH
487
A
HOH
187
3
HOH
HOH
488
A
HOH
188
3
HOH
HOH
489
A
HOH
189
3
HOH
HOH
490
A
n
1
0
A
n
2
1
A
n
3
2
A
TYR
3
n
4
TYR
3
A
GLN
4
n
5
GLN
4
A
ASN
5
n
6
ASN
5
A
ALA
6
n
7
ALA
6
A
ASN
7
n
8
ASN
7
A
TYR
8
n
9
TYR
8
A
SER
9
n
10
SER
9
A
ALA
10
n
11
ALA
10
A
PHE
11
n
12
PHE
11
A
TYR
12
n
13
TYR
12
A
VAL
13
n
14
VAL
13
A
SER
14
n
15
SER
14
A
GLU
15
n
16
GLU
15
A
PRO
16
n
17
PRO
16
A
PHE
17
n
18
PHE
17
A
SER
18
n
19
SER
18
A
GLU
19
n
20
GLU
19
A
SER
20
n
21
SER
20
A
ASN
21
n
22
ASN
21
A
LEU
22
n
23
LEU
22
A
GLY
23
n
24
GLY
23
A
ALA
24
n
25
ALA
24
A
ASN
25
n
26
ASN
25
A
SER
26
n
27
SER
26
A
THR
27
n
28
THR
27
A
HIS
28
n
29
HIS
28
A
ASP
29
n
30
ASP
29
A
PHE
30
n
31
PHE
30
A
VAL
31
n
32
VAL
31
A
TYR
32
n
33
TYR
32
A
TYR
33
n
34
TYR
33
A
ASN
34
n
35
ASN
34
A
MSE
35
n
36
MSE
35
A
LEU
36
n
37
LEU
36
A
ARG
37
n
38
ARG
37
A
MSE
38
n
39
MSE
38
A
TRP
39
n
40
TRP
39
A
LYS
40
n
41
LYS
40
A
GLY
41
n
42
GLY
41
A
GLU
42
n
43
GLU
42
A
ASP
43
n
44
ASP
43
A
ASN
44
n
45
ASN
44
A
SER
45
n
46
SER
45
A
PHE
46
n
47
PHE
46
A
PRO
47
n
48
PRO
47
A
PHE
48
n
49
PHE
48
A
ASN
49
n
50
ASN
49
A
ASP
50
n
51
ASP
50
A
ALA
51
n
52
ALA
51
A
HIS
52
n
53
HIS
52
A
ASP
53
n
54
ASP
53
A
LYS
54
n
55
LYS
54
A
THR
55
n
56
THR
55
A
TYR
56
n
57
TYR
56
A
ASN
57
n
58
ASN
57
A
VAL
58
n
59
VAL
58
A
ARG
59
n
60
ARG
59
A
ASP
60
n
61
ASP
60
A
GLY
61
n
62
GLY
61
A
SER
62
n
63
SER
62
A
ASP
63
n
64
ASP
63
A
TRP
64
n
65
TRP
64
A
GLU
65
n
66
GLU
65
A
LYS
66
n
67
LYS
66
A
THR
67
n
68
THR
67
A
LEU
68
n
69
LEU
68
A
LYS
69
n
70
LYS
69
A
PRO
70
n
71
PRO
70
A
ARG
71
n
72
ARG
71
A
LEU
72
n
73
LEU
72
A
HIS
73
n
74
HIS
73
A
THR
74
n
75
THR
74
A
ARG
75
n
76
ARG
75
A
LEU
76
n
77
LEU
76
A
ASP
77
n
78
ASP
77
A
ASN
78
n
79
ASN
78
A
SER
79
n
80
SER
79
A
LYS
80
n
81
LYS
80
A
ASN
81
n
82
ASN
81
A
ILE
82
n
83
ILE
82
A
ILE
83
n
84
ILE
83
A
LEU
84
n
85
LEU
84
A
PHE
85
n
86
PHE
85
A
LEU
86
n
87
LEU
86
A
SER
87
n
88
SER
87
A
SER
88
n
89
SER
88
A
ILE
89
n
90
ILE
89
A
THR
90
n
91
THR
90
A
ALA
91
n
92
ALA
91
A
ASN
92
n
93
ASN
92
A
SER
93
n
94
SER
93
A
ARG
94
n
95
ARG
94
A
ALA
95
n
96
ALA
95
A
LEU
96
n
97
LEU
96
A
ARG
97
n
98
ARG
97
A
GLU
98
n
99
GLU
98
A
GLU
99
n
100
GLU
99
A
MSE
100
n
101
MSE
100
A
ASN
101
n
102
ASN
101
A
TYR
102
n
103
TYR
102
A
GLY
103
n
104
GLY
103
A
ILE
104
n
105
ILE
104
A
GLY
105
n
106
GLY
105
A
THR
106
n
107
THR
106
A
LYS
107
n
108
LYS
107
A
GLY
108
n
109
GLY
108
A
LEU
109
n
110
LEU
109
A
PRO
110
n
111
PRO
110
A
VAL
111
n
112
VAL
111
A
ILE
112
n
113
ILE
112
A
VAL
113
n
114
VAL
113
A
ILE
114
n
115
ILE
114
A
TYR
115
n
116
TYR
115
A
PRO
116
n
117
PRO
116
A
ASP
117
n
118
ASP
117
A
TYR
118
n
119
TYR
118
A
ASP
119
n
120
ASP
119
A
LYS
120
n
121
LYS
120
A
LYS
121
n
122
LYS
121
A
SER
122
n
123
SER
122
A
ASP
123
n
124
ASP
123
A
ILE
124
n
125
ILE
124
A
VAL
125
n
126
VAL
125
A
ASP
126
n
127
ASP
126
A
SER
127
n
128
SER
127
A
ASN
128
n
129
ASN
128
A
GLY
129
n
130
GLY
129
A
ASN
130
n
131
ASN
130
A
PHE
131
n
132
PHE
131
A
LYS
132
n
133
LYS
132
A
LYS
133
n
134
LYS
133
A
GLN
134
n
135
GLN
134
A
ILE
135
n
136
ILE
135
A
LYS
136
n
137
LYS
136
A
ASP
137
n
138
ASP
137
A
LEU
138
n
139
LEU
138
A
TRP
139
n
140
TRP
139
A
ASP
140
n
141
ASP
140
A
LYS
141
n
142
LYS
141
A
LEU
142
n
143
LEU
142
A
PRO
143
n
144
PRO
143
A
ALA
144
n
145
ALA
144
A
PHE
145
n
146
PHE
145
A
ARG
146
n
147
ARG
146
A
ASP
147
n
148
ASP
147
A
ASN
148
n
149
ASN
148
A
MSE
149
n
150
MSE
149
A
SER
150
n
151
SER
150
A
SER
151
n
152
SER
151
A
VAL
152
n
153
VAL
152
A
ALA
153
n
154
ALA
153
A
THR
154
n
155
THR
154
A
LEU
155
n
156
LEU
155
A
HIS
156
n
157
HIS
156
A
ILE
157
n
158
ILE
157
A
PRO
158
n
159
PRO
158
A
CYS
159
n
160
CYS
159
A
THR
160
n
161
THR
160
A
LYS
161
n
162
LYS
161
A
SER
162
n
163
SER
162
A
VAL
163
n
164
VAL
163
A
ILE
164
n
165
ILE
164
A
ILE
165
n
166
ILE
165
A
SER
166
n
167
SER
166
A
ALA
167
n
168
ALA
167
A
LEU
168
n
169
LEU
168
A
ASN
169
n
170
ASN
169
A
ASN
170
n
171
ASN
170
A
GLU
171
n
172
GLU
171
A
ASP
172
n
173
ASP
172
A
PHE
173
n
174
PHE
173
A
MSE
174
n
175
MSE
174
A
VAL
175
n
176
VAL
175
A
ASN
176
n
177
ASN
176
A
THR
177
n
178
THR
177
A
MSE
178
n
179
MSE
178
A
ALA
179
n
180
ALA
179
A
ASP
180
n
181
ASP
180
A
ALA
181
n
182
ALA
181
A
GLU
182
n
183
GLU
182
A
LYS
183
n
184
LYS
183
A
TYR
184
n
185
TYR
184
A
TYR
185
n
186
TYR
185
A
TYR
186
n
187
TYR
186
A
LYS
187
n
188
LYS
187
A
PRO
188
n
189
PRO
188
A
author_and_software_defined_assembly
PISA
1
monomeric
gel filtration
A
MSE
35
SELENOMETHIONINE
A
MSE
36
MET
A
MSE
38
SELENOMETHIONINE
A
MSE
39
MET
A
MSE
100
SELENOMETHIONINE
A
MSE
101
MET
A
MSE
149
SELENOMETHIONINE
A
MSE
150
MET
A
MSE
174
SELENOMETHIONINE
A
MSE
175
MET
A
MSE
178
SELENOMETHIONINE
A
MSE
179
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
6
A
N
ALA
7
A
O
LYS
80
A
O
LYS
81
A
N
ILE
82
A
N
ILE
83
A
O
ILE
112
A
O
ILE
113
A
N
VAL
113
A
N
VAL
114
A
O
LEU
155
A
O
LEU
156
A
N
THR
154
A
N
THR
155
A
O
TYR
184
A
O
TYR
185
1
A
CG
TYR
3
A
CG
TYR
4
1
Y
1
A
CD1
TYR
3
A
CD1
TYR
4
1
Y
1
A
CD2
TYR
3
A
CD2
TYR
4
1
Y
1
A
CE1
TYR
3
A
CE1
TYR
4
1
Y
1
A
CE2
TYR
3
A
CE2
TYR
4
1
Y
1
A
CZ
TYR
3
A
CZ
TYR
4
1
Y
1
A
OH
TYR
3
A
OH
TYR
4
1
Y
1
A
CD
LYS
54
A
CD
LYS
55
1
Y
1
A
CE
LYS
54
A
CE
LYS
55
1
Y
1
A
NZ
LYS
54
A
NZ
LYS
55
1
Y
1
A
CE
LYS
66
A
CE
LYS
67
1
Y
1
A
NZ
LYS
66
A
NZ
LYS
67
1
Y
1
A
CE
LYS
120
A
CE
LYS
121
1
Y
1
A
NZ
LYS
120
A
NZ
LYS
121
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
MSE
1
A
MSE
2
1
Y
1
A
SER
2
A
SER
3
1
Y
1
3.75
0.50
120.30
124.05
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
97
97
97
B
B
B
N
1
-4.37
0.50
120.30
115.93
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
97
97
97
B
B
B
N
1
A
SER
20
B
-49.10
-7.72
1
A
THR
55
-176.86
136.36
1
A
THR
67
-134.51
-57.72
77.73
12.960
3.76
0.040
0.000
0.000
-0.010
0.000
-0.030
0.982
0.978
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.85 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. (4R)-2-METHYLPENTANE-2,4-DIOL (MRD) MODELED IS PRESENT IN CRYSTALLIZATION SOLUTION. 4. CISPEPTIDE 28-29 ARE SUPPORTED BY DENSITY.
0.139
0.117
0.118
1.200
32.461
2621
51494
5.100
99.350
1.00
0.17
1.059
0.021
RANDOM
1
THROUGHOUT
0.00
SAD
0.036
0.034
0.800
0.800
1.200
MAXIMUM LIKELIHOOD WITH PHASES
MASK
1.200
32.461
301
1808
8
0
1499
0.014
0.022
1743
0.001
0.020
1186
1.533
1.944
2391
0.949
3.000
2914
6.344
5.000
233
35.497
24.889
90
11.499
15.000
308
19.899
15.000
9
0.093
0.200
252
0.009
0.020
2003
0.002
0.020
362
1.596
1.500
1044
0.525
1.500
412
2.347
2.000
1712
3.239
3.000
699
4.371
4.500
662
1.371
3.000
2929
0.225
0.201
1.231
190
3330
3520
20
93.640
8.178
1.20
32.461
3HYN
51559
-3.00
0.076
1
9.100
99.300
0.374
1.20
1.24
2.4
14177
4529
95.00
0.318
1.24
1.29
3.0
18177
5194
100.00
0.268
1.29
1.35
3.7
18508
5256
100.00
0.224
1.35
1.42
4.5
17865
5057
99.90
0.188
1.42
1.51
5.5
18528
5220
100.00
0.147
1.51
1.63
7.4
18782
5289
99.90
0.121
1.63
1.79
9.2
17854
5055
99.70
0.092
1.79
2.05
12.0
20302
5232
99.60
0.077
2.05
2.58
17.9
32414
5240
99.80
0.056
2.58
32.461
23.6
36452
5483
99.00
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.5.0092
refinement
P.D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data reduction
XDS
phasing
SHELXD
phasing
autoSHARP
Putative signal transduction protein
Crystal structure of a putative signal transduction protein (eubrec_0645) from eubacterium rectale atcc 33656 at 1.20 A resolution
1
N
N
2
N
N
3
N
N
ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION.
A
GLY
23
A
GLY
24
HELX_P
A
THR
27
A
THR
28
5
1
5
A
ASP
29
A
ASP
30
HELX_P
A
ASP
43
A
ASP
44
1
2
15
A
THR
67
A
THR
68
HELX_P
A
ASN
78
A
ASN
79
1
3
12
A
SER
93
A
SER
94
HELX_P
A
ILE
104
A
ILE
105
1
4
12
A
LYS
120
A
LYS
121
HELX_P
A
ILE
124
A
ILE
125
5
5
5
A
LYS
132
A
LYS
133
HELX_P
A
LYS
141
A
LYS
142
1
6
10
A
LEU
142
A
LEU
143
HELX_P
A
ASP
147
A
ASP
148
1
7
6
A
ASN
148
A
ASN
149
HELX_P
A
SER
151
A
SER
152
5
8
4
A
THR
160
A
THR
161
HELX_P
A
ASN
169
A
ASN
170
1
9
10
A
ASN
170
A
ASN
171
HELX_P
A
MSE
178
A
MSE
179
5
10
9
covale
1.325
both
A
ASN
34
A
C
ASN
35
1_555
A
MSE
35
A
N
MSE
36
1_555
covale
1.340
both
A
MSE
35
A
C
MSE
36
1_555
A
LEU
36
A
N
LEU
37
1_555
covale
1.320
both
A
ARG
37
A
C
ARG
38
1_555
A
MSE
38
A
N
MSE
39
1_555
covale
1.332
both
A
MSE
38
A
C
MSE
39
1_555
A
TRP
39
A
N
TRP
40
1_555
covale
1.326
both
A
GLU
99
A
C
GLU
100
1_555
A
MSE
100
A
N
MSE
101
1_555
covale
1.349
both
A
MSE
100
A
C
MSE
101
1_555
A
ASN
101
A
N
ASN
102
1_555
covale
1.328
both
A
ASN
148
A
C
ASN
149
1_555
A
MSE
149
A
N
MSE
150
1_555
covale
1.339
both
A
MSE
149
A
C
MSE
150
1_555
A
SER
150
A
N
SER
151
1_555
covale
1.343
both
A
PHE
173
A
C
PHE
174
1_555
A
MSE
174
A
N
MSE
175
1_555
covale
1.339
both
A
MSE
174
A
C
MSE
175
1_555
A
VAL
175
A
N
VAL
176
1_555
covale
1.336
both
A
THR
177
A
C
THR
178
1_555
A
MSE
178
A
N
MSE
179
1_555
covale
1.317
both
A
MSE
178
A
C
MSE
179
1_555
A
ALA
179
A
N
ALA
180
1_555
SIGNALING PROTEIN
Duf1863 family protein, nucleotide-binding protein, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, signaling protein
A
GLU
15
A
GLU
16
1
A
PRO
16
A
PRO
17
-2.36
A
HIS
28
A
HIS
29
1
A
ASP
29
A
ASP
30
-0.48
3HYN
PDB
1
1
3HYN
GMSYQNANYSAFYVSEPFSESNLGANSTHDFVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNS
KNIILFLSSITANSRALREEMNYGIGTKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKDLWDKLPAFRDNMSSVATLHIPC
TKSVIISALNNEDFMVNTMADAEKYYYKP
0
188
3HYN
0
188
3HYN
A
1
1
189
5
parallel
parallel
parallel
parallel
A
ALA
6
A
ALA
7
A
ALA
10
A
ALA
11
A
SER
79
A
SER
80
A
PHE
85
A
PHE
86
A
VAL
111
A
VAL
112
A
TYR
115
A
TYR
116
A
ALA
153
A
ALA
154
A
PRO
158
A
PRO
159
A
GLU
182
A
GLU
183
A
TYR
185
A
TYR
186
BINDING SITE FOR RESIDUE MRD A 189
Software
9
A
ASN
21
A
ASN
22
9
3_545
A
LEU
22
A
LEU
23
9
3_545
A
GLY
23
A
GLY
24
9
3_545
A
ASN
170
A
ASN
171
9
1_555
A
ASP
172
A
ASP
173
9
1_555
A
PHE
173
A
PHE
174
9
1_555
A
TYR
184
A
TYR
185
9
1_555
A
TYR
185
A
TYR
186
9
1_555
A
HOH
247
C
HOH
9
1_555
19
P 21 21 21