0.011647
0.006724
0.000000
0.000000
0.013449
0.000000
0.000000
0.000000
0.007228
0.00000
0.00000
0.00000
Deng, X.
Phillips, M.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
85.858
85.858
138.352
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C17 H21 N4 O9 P
456.344
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C16 H15 N5 2
277.324
5-methyl-7-(naphthalen-2-ylamino)-1H-[1,2,4]triazolo[1,5-a]pyrimidine-3,8-diium
non-polymer
C14 H31 N O
229.402
LAURYL DIMETHYLAMINE-N-OXIDE
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H4 N2 O4
156.096
OROTIC ACID
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
N
C
N
90
N
O
N
91
N
N
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
N
Y
96
N
C
Y
97
N
C
Y
98
N
C
N
99
N
C
Y
100
N
C
N
101
N
C
Y
102
N
C
Y
103
N
C
N
104
N
N
N
105
N
C
N
106
N
C
N
107
S
C
N
108
N
O
N
109
S
C
N
110
N
O
N
111
R
C
N
112
N
O
N
113
N
C
N
114
N
O
N
115
N
P
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
N
N
141
S
C
N
142
N
C
N
143
N
O
N
144
N
C
N
145
N
C
N
146
N
C
N
147
N
O
N
148
N
N
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
O
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
N
C
N
181
N
C
N
182
N
O
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
N
N
190
S
C
N
191
N
C
N
192
N
O
N
193
N
C
Y
194
N
C
Y
195
N
N
Y
196
N
C
Y
197
N
C
Y
198
N
N
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
O
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
S
C
N
218
N
C
N
219
N
C
N
220
N
C
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
Y
235
N
C
N
236
N
N
Y
237
N
C
Y
238
N
N
Y
239
N
C
Y
240
N
N
Y
241
N
C
Y
242
N
N
Y
243
N
C
Y
244
N
N
Y
245
N
C
Y
246
N
C
Y
247
N
C
Y
248
N
C
Y
249
N
C
Y
250
N
C
Y
251
N
C
Y
252
N
C
N
253
N
C
Y
254
N
C
Y
255
N
C
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
N
323
N
C
N
324
N
C
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
C
N
346
N
C
N
347
N
C
N
348
N
N
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
N
370
N
C
N
371
N
S
N
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
Y
385
N
N
Y
386
N
C
N
387
N
O
Y
388
N
N
Y
389
N
C
N
390
N
O
Y
391
N
C
Y
392
N
C
N
393
N
C
N
394
N
O
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
N
C
N
428
N
C
N
429
N
C
N
430
N
O
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
N
N
441
S
C
N
442
N
C
N
443
N
O
N
444
N
C
N
445
N
O
N
446
N
O
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
N
N
455
S
C
N
456
N
C
N
457
N
O
N
458
R
C
N
459
N
O
N
460
N
C
N
461
N
O
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
N
N
472
S
C
N
473
N
C
N
474
N
O
N
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
Y
479
N
N
Y
480
N
C
Y
481
N
C
Y
482
N
C
Y
483
N
C
Y
484
N
C
N
485
N
O
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
N
N
499
S
C
N
500
N
C
N
501
N
O
N
502
N
C
Y
503
N
C
Y
504
N
C
Y
505
N
C
Y
506
N
C
Y
507
N
C
Y
508
N
C
N
509
N
O
N
510
N
O
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
N
N
523
S
C
N
524
N
C
N
525
N
O
N
526
N
C
N
527
N
C
N
528
N
C
N
529
N
O
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
Y
94
N
doub
Y
95
N
sing
Y
96
N
sing
N
97
N
sing
N
98
N
sing
Y
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
Y
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
Y
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
Y
194
N
sing
Y
195
N
doub
Y
196
N
doub
N
197
N
sing
Y
198
N
sing
N
199
N
sing
Y
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
Y
227
N
doub
Y
228
N
sing
N
229
N
sing
N
230
N
sing
Y
231
N
sing
Y
232
N
sing
Y
233
N
doub
Y
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
Y
238
N
sing
Y
239
N
sing
Y
240
N
doub
Y
241
N
doub
Y
242
N
sing
Y
243
N
doub
Y
244
N
sing
Y
245
N
doub
Y
246
N
sing
Y
247
N
doub
Y
248
N
sing
Y
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
N
379
N
doub
Y
380
N
sing
Y
381
N
sing
N
382
N
sing
N
383
N
doub
Y
384
N
sing
Y
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
Y
402
N
doub
Y
403
N
sing
Y
404
N
sing
N
405
N
sing
Y
406
N
doub
N
407
N
sing
Y
408
N
doub
N
409
N
sing
Y
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
doub
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
doub
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
doub
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
doub
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
Y
471
N
doub
Y
472
N
sing
Y
473
N
sing
N
474
N
sing
Y
475
N
doub
Y
476
N
sing
Y
477
N
sing
N
478
N
sing
Y
479
N
sing
Y
480
N
doub
N
481
N
sing
Y
482
N
doub
N
483
N
sing
Y
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
doub
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
Y
499
N
doub
Y
500
N
sing
Y
501
N
sing
N
502
N
sing
Y
503
N
doub
N
504
N
sing
Y
505
N
doub
N
506
N
sing
Y
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
doub
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
284
26999
27009
10.1074/jbc.M109.028589
19640844
Structural plasticity of malaria dihydroorotate dehydrogenase allows selective binding of diverse chemical scaffolds.
2009
10.2210/pdb3i65/pdb
pdb_00003i65
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
high-resolution double-crystal monochromator
CCD
2008-11-01
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
19-ID
APS
1.00
SYNCHROTRON
APS BEAMLINE 19-ID
46652.344
Dihydroorotate dehydrogenase homolog, mitochondrial
1.3.3.1
UNP residues 158-569 with 384-413 deleted
1
man
polymer
277.324
5-methyl-7-(naphthalen-2-ylamino)-1H-[1,2,4]triazolo[1,5-a]pyrimidine-3,8-diium
1
syn
non-polymer
456.344
FLAVIN MONONUCLEOTIDE
1
syn
non-polymer
156.096
OROTIC ACID
1
syn
non-polymer
229.402
LAURYL DIMETHYLAMINE-N-OXIDE
1
syn
non-polymer
18.015
water
124
nat
water
DHOdehase, Dihydroorotate oxidase
no
no
MGSSHHHHHHSSGLVPRGSHMASMTGGQQGRDPFESYNPEFFLYDIFLKFCLKYIDGEICHDLFLLLGKYNILPYDTSND
SIYACTNIKHLDFINPFGVAAGFDKNGVCIDSILKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCD
KVTENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNII
LSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKG
GVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRG
YYNLKEAIGRKHSKS
MGSSHHHHHHSSGLVPRGSHMASMTGGQQGRDPFESYNPEFFLYDIFLKFCLKYIDGEICHDLFLLLGKYNILPYDTSND
SIYACTNIKHLDFINPFGVAAGFDKNGVCIDSILKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCD
KVTENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNII
LSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKG
GVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRG
YYNLKEAIGRKHSKS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
PFF0160c, Plasmodium falciparum
36329
Plasmodium falciparum 3D7
562
Escherichia coli
BL21
Plasmid
pET28b
1
3.16
61.02
VAPOR DIFFUSION, HANGING DROP
4.6
0.16 M Ammonium sulfate, 0.1 M Sodium Acetate, pH 4.6, 18-20% PEG4000, 25% Glycerol, and 10 mM DTT, EVAPORATION, temperature 293K, VAPOR DIFFUSION, HANGING DROP
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2009-07-28
1
1
2011-07-13
1
2
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2009-07-06
REL
REL
JZ8
5-methyl-7-(naphthalen-2-ylamino)-1H-[1,2,4]triazolo[1,5-a]pyrimidine-3,8-diium
FMN
FLAVIN MONONUCLEOTIDE
ORO
OROTIC ACID
LDA
LAURYL DIMETHYLAMINE-N-OXIDE
HOH
water
1TV5
PDB ENTRY 1TV5
PDB
experimental model
JZ8
1001
2
JZ8
JZ8
1001
A
FMN
1002
3
FMN
FMN
1002
A
ORO
1003
4
ORO
ORO
1003
A
LDA
1004
5
LDA
LDA
1004
A
HOH
1
6
HOH
HOH
1
A
HOH
2
6
HOH
HOH
2
A
HOH
3
6
HOH
HOH
3
A
HOH
4
6
HOH
HOH
4
A
HOH
5
6
HOH
HOH
5
A
HOH
6
6
HOH
HOH
6
A
HOH
7
6
HOH
HOH
7
A
HOH
8
6
HOH
HOH
8
A
HOH
9
6
HOH
HOH
9
A
HOH
10
6
HOH
HOH
10
A
HOH
11
6
HOH
HOH
11
A
HOH
12
6
HOH
HOH
12
A
HOH
13
6
HOH
HOH
13
A
HOH
14
6
HOH
HOH
14
A
HOH
15
6
HOH
HOH
15
A
HOH
16
6
HOH
HOH
16
A
HOH
17
6
HOH
HOH
17
A
HOH
18
6
HOH
HOH
18
A
HOH
19
6
HOH
HOH
19
A
HOH
20
6
HOH
HOH
20
A
HOH
21
6
HOH
HOH
21
A
HOH
22
6
HOH
HOH
22
A
HOH
23
6
HOH
HOH
23
A
HOH
24
6
HOH
HOH
24
A
HOH
25
6
HOH
HOH
25
A
HOH
26
6
HOH
HOH
26
A
HOH
27
6
HOH
HOH
27
A
HOH
28
6
HOH
HOH
28
A
HOH
29
6
HOH
HOH
29
A
HOH
30
6
HOH
HOH
30
A
HOH
31
6
HOH
HOH
31
A
HOH
32
6
HOH
HOH
32
A
HOH
33
6
HOH
HOH
33
A
HOH
34
6
HOH
HOH
34
A
HOH
35
6
HOH
HOH
35
A
HOH
36
6
HOH
HOH
36
A
HOH
37
6
HOH
HOH
37
A
HOH
38
6
HOH
HOH
38
A
HOH
39
6
HOH
HOH
39
A
HOH
40
6
HOH
HOH
40
A
HOH
41
6
HOH
HOH
41
A
HOH
42
6
HOH
HOH
42
A
HOH
43
6
HOH
HOH
43
A
HOH
44
6
HOH
HOH
44
A
HOH
45
6
HOH
HOH
45
A
HOH
46
6
HOH
HOH
46
A
HOH
47
6
HOH
HOH
47
A
HOH
48
6
HOH
HOH
48
A
HOH
49
6
HOH
HOH
49
A
HOH
50
6
HOH
HOH
50
A
HOH
51
6
HOH
HOH
51
A
HOH
52
6
HOH
HOH
52
A
HOH
53
6
HOH
HOH
53
A
HOH
54
6
HOH
HOH
54
A
HOH
55
6
HOH
HOH
55
A
HOH
56
6
HOH
HOH
56
A
HOH
57
6
HOH
HOH
57
A
HOH
58
6
HOH
HOH
58
A
HOH
59
6
HOH
HOH
59
A
HOH
60
6
HOH
HOH
60
A
HOH
61
6
HOH
HOH
61
A
HOH
62
6
HOH
HOH
62
A
HOH
63
6
HOH
HOH
63
A
HOH
64
6
HOH
HOH
64
A
HOH
65
6
HOH
HOH
65
A
HOH
66
6
HOH
HOH
66
A
HOH
67
6
HOH
HOH
67
A
HOH
68
6
HOH
HOH
68
A
HOH
69
6
HOH
HOH
69
A
HOH
70
6
HOH
HOH
70
A
HOH
71
6
HOH
HOH
71
A
HOH
72
6
HOH
HOH
72
A
HOH
73
6
HOH
HOH
73
A
HOH
74
6
HOH
HOH
74
A
HOH
75
6
HOH
HOH
75
A
HOH
76
6
HOH
HOH
76
A
HOH
77
6
HOH
HOH
77
A
HOH
78
6
HOH
HOH
78
A
HOH
79
6
HOH
HOH
79
A
HOH
80
6
HOH
HOH
80
A
HOH
81
6
HOH
HOH
81
A
HOH
82
6
HOH
HOH
82
A
HOH
83
6
HOH
HOH
83
A
HOH
84
6
HOH
HOH
84
A
HOH
85
6
HOH
HOH
85
A
HOH
86
6
HOH
HOH
86
A
HOH
87
6
HOH
HOH
87
A
HOH
88
6
HOH
HOH
88
A
HOH
89
6
HOH
HOH
89
A
HOH
90
6
HOH
HOH
90
A
HOH
91
6
HOH
HOH
91
A
HOH
92
6
HOH
HOH
92
A
HOH
93
6
HOH
HOH
93
A
HOH
94
6
HOH
HOH
94
A
HOH
95
6
HOH
HOH
95
A
HOH
96
6
HOH
HOH
96
A
HOH
97
6
HOH
HOH
97
A
HOH
98
6
HOH
HOH
98
A
HOH
99
6
HOH
HOH
99
A
HOH
100
6
HOH
HOH
100
A
HOH
101
6
HOH
HOH
101
A
HOH
102
6
HOH
HOH
102
A
HOH
103
6
HOH
HOH
103
A
HOH
104
6
HOH
HOH
104
A
HOH
105
6
HOH
HOH
105
A
HOH
106
6
HOH
HOH
106
A
HOH
107
6
HOH
HOH
107
A
HOH
108
6
HOH
HOH
108
A
HOH
109
6
HOH
HOH
109
A
HOH
110
6
HOH
HOH
110
A
HOH
111
6
HOH
HOH
111
A
HOH
112
6
HOH
HOH
112
A
HOH
113
6
HOH
HOH
113
A
HOH
114
6
HOH
HOH
114
A
HOH
115
6
HOH
HOH
115
A
HOH
116
6
HOH
HOH
116
A
HOH
117
6
HOH
HOH
117
A
HOH
118
6
HOH
HOH
118
A
HOH
119
6
HOH
HOH
119
A
HOH
120
6
HOH
HOH
120
A
HOH
121
6
HOH
HOH
121
A
HOH
122
6
HOH
HOH
122
A
HOH
123
6
HOH
HOH
123
A
HOH
124
6
HOH
HOH
124
A
n
1
125
A
n
2
126
A
n
3
127
A
n
4
128
A
n
5
129
A
n
6
130
A
n
7
131
A
n
8
132
A
n
9
133
A
n
10
134
A
n
11
135
A
n
12
136
A
n
13
137
A
n
14
138
A
n
15
139
A
n
16
140
A
n
17
141
A
n
18
142
A
n
19
143
A
n
20
144
A
n
21
145
A
n
22
146
A
n
23
147
A
n
24
148
A
n
25
149
A
n
26
150
A
n
27
151
A
n
28
152
A
n
29
153
A
n
30
154
A
n
31
155
A
n
32
156
A
n
33
157
A
n
34
158
A
n
35
159
A
SER
160
n
36
SER
160
A
TYR
161
n
37
TYR
161
A
ASN
162
n
38
ASN
162
A
PRO
163
n
39
PRO
163
A
GLU
164
n
40
GLU
164
A
PHE
165
n
41
PHE
165
A
PHE
166
n
42
PHE
166
A
LEU
167
n
43
LEU
167
A
TYR
168
n
44
TYR
168
A
ASP
169
n
45
ASP
169
A
ILE
170
n
46
ILE
170
A
PHE
171
n
47
PHE
171
A
LEU
172
n
48
LEU
172
A
LYS
173
n
49
LYS
173
A
PHE
174
n
50
PHE
174
A
CYS
175
n
51
CYS
175
A
LEU
176
n
52
LEU
176
A
LYS
177
n
53
LYS
177
A
TYR
178
n
54
TYR
178
A
ILE
179
n
55
ILE
179
A
ASP
180
n
56
ASP
180
A
GLY
181
n
57
GLY
181
A
GLU
182
n
58
GLU
182
A
ILE
183
n
59
ILE
183
A
CYS
184
n
60
CYS
184
A
HIS
185
n
61
HIS
185
A
ASP
186
n
62
ASP
186
A
LEU
187
n
63
LEU
187
A
PHE
188
n
64
PHE
188
A
LEU
189
n
65
LEU
189
A
LEU
190
n
66
LEU
190
A
LEU
191
n
67
LEU
191
A
GLY
192
n
68
GLY
192
A
LYS
193
n
69
LYS
193
A
TYR
194
n
70
TYR
194
A
ASN
195
n
71
ASN
195
A
ILE
196
n
72
ILE
196
A
LEU
197
n
73
LEU
197
A
PRO
198
n
74
PRO
198
A
TYR
199
n
75
TYR
199
A
ASP
200
n
76
ASP
200
A
THR
201
n
77
THR
201
A
SER
202
n
78
SER
202
A
ASN
203
n
79
ASN
203
A
ASP
204
n
80
ASP
204
A
SER
205
n
81
SER
205
A
ILE
206
n
82
ILE
206
A
TYR
207
n
83
TYR
207
A
ALA
208
n
84
ALA
208
A
CYS
209
n
85
CYS
209
A
THR
210
n
86
THR
210
A
ASN
211
n
87
ASN
211
A
ILE
212
n
88
ILE
212
A
LYS
213
n
89
LYS
213
A
HIS
214
n
90
HIS
214
A
LEU
215
n
91
LEU
215
A
ASP
216
n
92
ASP
216
A
PHE
217
n
93
PHE
217
A
ILE
218
n
94
ILE
218
A
ASN
219
n
95
ASN
219
A
PRO
220
n
96
PRO
220
A
PHE
221
n
97
PHE
221
A
GLY
222
n
98
GLY
222
A
VAL
223
n
99
VAL
223
A
ALA
224
n
100
ALA
224
A
ALA
225
n
101
ALA
225
A
GLY
226
n
102
GLY
226
A
PHE
227
n
103
PHE
227
A
ASP
228
n
104
ASP
228
A
LYS
229
n
105
LYS
229
A
ASN
230
n
106
ASN
230
A
GLY
231
n
107
GLY
231
A
VAL
232
n
108
VAL
232
A
CYS
233
n
109
CYS
233
A
ILE
234
n
110
ILE
234
A
ASP
235
n
111
ASP
235
A
SER
236
n
112
SER
236
A
ILE
237
n
113
ILE
237
A
LEU
238
n
114
LEU
238
A
LYS
239
n
115
LYS
239
A
LEU
240
n
116
LEU
240
A
GLY
241
n
117
GLY
241
A
PHE
242
n
118
PHE
242
A
SER
243
n
119
SER
243
A
PHE
244
n
120
PHE
244
A
ILE
245
n
121
ILE
245
A
GLU
246
n
122
GLU
246
A
ILE
247
n
123
ILE
247
A
GLY
248
n
124
GLY
248
A
THR
249
n
125
THR
249
A
ILE
250
n
126
ILE
250
A
THR
251
n
127
THR
251
A
PRO
252
n
128
PRO
252
A
ARG
253
n
129
ARG
253
A
GLY
254
n
130
GLY
254
A
GLN
255
n
131
GLN
255
A
THR
256
n
132
THR
256
A
GLY
257
n
133
GLY
257
A
ASN
258
n
134
ASN
258
A
ALA
259
n
135
ALA
259
A
LYS
260
n
136
LYS
260
A
PRO
261
n
137
PRO
261
A
ARG
262
n
138
ARG
262
A
ILE
263
n
139
ILE
263
A
PHE
264
n
140
PHE
264
A
ARG
265
n
141
ARG
265
A
ASP
266
n
142
ASP
266
A
VAL
267
n
143
VAL
267
A
GLU
268
n
144
GLU
268
A
SER
269
n
145
SER
269
A
ARG
270
n
146
ARG
270
A
SER
271
n
147
SER
271
A
ILE
272
n
148
ILE
272
A
ILE
273
n
149
ILE
273
A
ASN
274
n
150
ASN
274
A
SER
275
n
151
SER
275
A
CYS
276
n
152
CYS
276
A
GLY
277
n
153
GLY
277
A
PHE
278
n
154
PHE
278
A
ASN
279
n
155
ASN
279
A
ASN
280
n
156
ASN
280
A
MET
281
n
157
MET
281
A
GLY
282
n
158
GLY
282
A
CYS
283
n
159
CYS
283
A
ASP
284
n
160
ASP
284
A
LYS
285
n
161
LYS
285
A
VAL
286
n
162
VAL
286
A
THR
287
n
163
THR
287
A
GLU
288
n
164
GLU
288
A
ASN
289
n
165
ASN
289
A
LEU
290
n
166
LEU
290
A
ILE
291
n
167
ILE
291
A
LEU
292
n
168
LEU
292
A
PHE
293
n
169
PHE
293
A
ARG
294
n
170
ARG
294
A
LYS
295
n
171
LYS
295
A
ARG
296
n
172
ARG
296
A
GLN
297
n
173
GLN
297
A
GLU
298
n
174
GLU
298
A
GLU
299
n
175
GLU
299
A
ASP
300
n
176
ASP
300
A
LYS
301
n
177
LYS
301
A
LEU
302
n
178
LEU
302
A
LEU
303
n
179
LEU
303
A
SER
304
n
180
SER
304
A
LYS
305
n
181
LYS
305
A
HIS
306
n
182
HIS
306
A
ILE
307
n
183
ILE
307
A
VAL
308
n
184
VAL
308
A
GLY
309
n
185
GLY
309
A
VAL
310
n
186
VAL
310
A
SER
311
n
187
SER
311
A
ILE
312
n
188
ILE
312
A
GLY
313
n
189
GLY
313
A
LYS
314
n
190
LYS
314
A
ASN
315
n
191
ASN
315
A
LYS
316
n
192
LYS
316
A
ASP
317
n
193
ASP
317
A
THR
318
n
194
THR
318
A
VAL
319
n
195
VAL
319
A
ASN
320
n
196
ASN
320
A
ILE
321
n
197
ILE
321
A
VAL
322
n
198
VAL
322
A
ASP
323
n
199
ASP
323
A
ASP
324
n
200
ASP
324
A
LEU
325
n
201
LEU
325
A
LYS
326
n
202
LYS
326
A
TYR
327
n
203
TYR
327
A
CYS
328
n
204
CYS
328
A
ILE
329
n
205
ILE
329
A
ASN
330
n
206
ASN
330
A
LYS
331
n
207
LYS
331
A
ILE
332
n
208
ILE
332
A
GLY
333
n
209
GLY
333
A
ARG
334
n
210
ARG
334
A
TYR
335
n
211
TYR
335
A
ALA
336
n
212
ALA
336
A
ASP
337
n
213
ASP
337
A
TYR
338
n
214
TYR
338
A
ILE
339
n
215
ILE
339
A
ALA
340
n
216
ALA
340
A
ILE
341
n
217
ILE
341
A
ASN
342
n
218
ASN
342
A
VAL
343
n
219
VAL
343
A
SER
344
n
220
SER
344
A
SER
345
n
221
SER
345
A
PRO
346
n
222
PRO
346
A
ASN
347
n
223
ASN
347
A
n
224
348
A
n
225
349
A
n
226
350
A
n
227
351
A
n
228
352
A
n
229
353
A
n
230
354
A
n
231
355
A
GLU
356
n
232
GLU
356
A
ALA
357
n
233
ALA
357
A
GLY
358
n
234
GLY
358
A
LYS
359
n
235
LYS
359
A
LEU
360
n
236
LEU
360
A
LYS
361
n
237
LYS
361
A
ASN
362
n
238
ASN
362
A
ILE
363
n
239
ILE
363
A
ILE
364
n
240
ILE
364
A
LEU
365
n
241
LEU
365
A
SER
366
n
242
SER
366
A
VAL
367
n
243
VAL
367
A
LYS
368
n
244
LYS
368
A
GLU
369
n
245
GLU
369
A
GLU
370
n
246
GLU
370
A
ILE
371
n
247
ILE
371
A
ASP
372
n
248
ASP
372
A
ASN
373
n
249
ASN
373
A
LEU
374
n
250
LEU
374
A
GLU
375
n
251
GLU
375
A
LYS
376
n
252
LYS
376
A
ASN
377
n
253
ASN
377
A
ASN
378
n
254
ASN
378
A
ILE
379
n
255
ILE
379
A
MET
380
n
256
MET
380
A
ASN
381
n
257
ASN
381
A
ASP
382
n
258
ASP
382
A
GLU
383
n
259
GLU
383
A
PHE
414
n
260
PHE
414
A
LEU
415
n
261
LEU
415
A
TRP
416
n
262
TRP
416
A
PHE
417
n
263
PHE
417
A
ASN
418
n
264
ASN
418
A
THR
419
n
265
THR
419
A
THR
420
n
266
THR
420
A
LYS
421
n
267
LYS
421
A
LYS
422
n
268
LYS
422
A
LYS
423
n
269
LYS
423
A
PRO
424
n
270
PRO
424
A
LEU
425
n
271
LEU
425
A
VAL
426
n
272
VAL
426
A
PHE
427
n
273
PHE
427
A
VAL
428
n
274
VAL
428
A
LYS
429
n
275
LYS
429
A
LEU
430
n
276
LEU
430
A
ALA
431
n
277
ALA
431
A
PRO
432
n
278
PRO
432
A
ASP
433
n
279
ASP
433
A
LEU
434
n
280
LEU
434
A
ASN
435
n
281
ASN
435
A
GLN
436
n
282
GLN
436
A
GLU
437
n
283
GLU
437
A
GLN
438
n
284
GLN
438
A
LYS
439
n
285
LYS
439
A
LYS
440
n
286
LYS
440
A
GLU
441
n
287
GLU
441
A
ILE
442
n
288
ILE
442
A
ALA
443
n
289
ALA
443
A
ASP
444
n
290
ASP
444
A
VAL
445
n
291
VAL
445
A
LEU
446
n
292
LEU
446
A
LEU
447
n
293
LEU
447
A
GLU
448
n
294
GLU
448
A
THR
449
n
295
THR
449
A
ASN
450
n
296
ASN
450
A
ILE
451
n
297
ILE
451
A
ASP
452
n
298
ASP
452
A
GLY
453
n
299
GLY
453
A
MET
454
n
300
MET
454
A
ILE
455
n
301
ILE
455
A
ILE
456
n
302
ILE
456
A
SER
457
n
303
SER
457
A
ASN
458
n
304
ASN
458
A
THR
459
n
305
THR
459
A
THR
460
n
306
THR
460
A
THR
461
n
307
THR
461
A
GLN
462
n
308
GLN
462
A
ILE
463
n
309
ILE
463
A
ASN
464
n
310
ASN
464
A
ASP
465
n
311
ASP
465
A
ILE
466
n
312
ILE
466
A
LYS
467
n
313
LYS
467
A
SER
468
n
314
SER
468
A
PHE
469
n
315
PHE
469
A
GLU
470
n
316
GLU
470
A
ASN
471
n
317
ASN
471
A
LYS
472
n
318
LYS
472
A
LYS
473
n
319
LYS
473
A
GLY
474
n
320
GLY
474
A
GLY
475
n
321
GLY
475
A
VAL
476
n
322
VAL
476
A
SER
477
n
323
SER
477
A
GLY
478
n
324
GLY
478
A
ALA
479
n
325
ALA
479
A
LYS
480
n
326
LYS
480
A
LEU
481
n
327
LEU
481
A
LYS
482
n
328
LYS
482
A
ASP
483
n
329
ASP
483
A
ILE
484
n
330
ILE
484
A
SER
485
n
331
SER
485
A
THR
486
n
332
THR
486
A
LYS
487
n
333
LYS
487
A
PHE
488
n
334
PHE
488
A
ILE
489
n
335
ILE
489
A
CYS
490
n
336
CYS
490
A
GLU
491
n
337
GLU
491
A
MET
492
n
338
MET
492
A
TYR
493
n
339
TYR
493
A
ASN
494
n
340
ASN
494
A
TYR
495
n
341
TYR
495
A
THR
496
n
342
THR
496
A
ASN
497
n
343
ASN
497
A
LYS
498
n
344
LYS
498
A
GLN
499
n
345
GLN
499
A
ILE
500
n
346
ILE
500
A
PRO
501
n
347
PRO
501
A
ILE
502
n
348
ILE
502
A
ILE
503
n
349
ILE
503
A
ALA
504
n
350
ALA
504
A
SER
505
n
351
SER
505
A
GLY
506
n
352
GLY
506
A
GLY
507
n
353
GLY
507
A
ILE
508
n
354
ILE
508
A
PHE
509
n
355
PHE
509
A
SER
510
n
356
SER
510
A
GLY
511
n
357
GLY
511
A
LEU
512
n
358
LEU
512
A
ASP
513
n
359
ASP
513
A
ALA
514
n
360
ALA
514
A
LEU
515
n
361
LEU
515
A
GLU
516
n
362
GLU
516
A
LYS
517
n
363
LYS
517
A
ILE
518
n
364
ILE
518
A
GLU
519
n
365
GLU
519
A
ALA
520
n
366
ALA
520
A
GLY
521
n
367
GLY
521
A
ALA
522
n
368
ALA
522
A
SER
523
n
369
SER
523
A
VAL
524
n
370
VAL
524
A
CYS
525
n
371
CYS
525
A
GLN
526
n
372
GLN
526
A
LEU
527
n
373
LEU
527
A
TYR
528
n
374
TYR
528
A
SER
529
n
375
SER
529
A
CYS
530
n
376
CYS
530
A
LEU
531
n
377
LEU
531
A
VAL
532
n
378
VAL
532
A
PHE
533
n
379
PHE
533
A
ASN
534
n
380
ASN
534
A
GLY
535
n
381
GLY
535
A
MET
536
n
382
MET
536
A
LYS
537
n
383
LYS
537
A
SER
538
n
384
SER
538
A
ALA
539
n
385
ALA
539
A
VAL
540
n
386
VAL
540
A
GLN
541
n
387
GLN
541
A
ILE
542
n
388
ILE
542
A
LYS
543
n
389
LYS
543
A
ARG
544
n
390
ARG
544
A
GLU
545
n
391
GLU
545
A
LEU
546
n
392
LEU
546
A
ASN
547
n
393
ASN
547
A
HIS
548
n
394
HIS
548
A
LEU
549
n
395
LEU
549
A
LEU
550
n
396
LEU
550
A
TYR
551
n
397
TYR
551
A
GLN
552
n
398
GLN
552
A
ARG
553
n
399
ARG
553
A
GLY
554
n
400
GLY
554
A
TYR
555
n
401
TYR
555
A
TYR
556
n
402
TYR
556
A
ASN
557
n
403
ASN
557
A
LEU
558
n
404
LEU
558
A
LYS
559
n
405
LYS
559
A
GLU
560
n
406
GLU
560
A
ALA
561
n
407
ALA
561
A
ILE
562
n
408
ILE
562
A
GLY
563
n
409
GLY
563
A
ARG
564
n
410
ARG
564
A
LYS
565
n
411
LYS
565
A
HIS
566
n
412
HIS
566
A
SER
567
n
413
SER
567
A
n
414
568
A
n
415
569
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
210
A
N
THR
86
A
O
PHE
217
A
O
PHE
93
A
N
VAL
223
A
N
VAL
99
A
O
GLU
246
A
O
GLU
122
A
N
ILE
247
A
N
ILE
123
A
O
SER
311
A
O
SER
187
A
N
VAL
310
A
N
VAL
186
A
O
ALA
340
A
O
ALA
216
A
N
ILE
339
A
N
ILE
215
A
O
PHE
427
A
O
PHE
273
A
N
VAL
428
A
N
VAL
274
A
O
ILE
455
A
O
ILE
301
A
N
MET
454
A
N
MET
300
A
O
ILE
503
A
O
ILE
349
A
N
ALA
504
A
N
ALA
350
A
O
VAL
524
A
O
VAL
370
A
O
CYS
525
A
O
CYS
371
A
N
GLY
222
A
N
GLY
98
A
N
ASP
266
A
N
ASP
142
A
O
SER
271
A
O
SER
147
A
N
ILE
272
A
N
ILE
148
A
O
SER
477
A
O
SER
323
1
A
HOH
88
F
HOH
1
A
MET
125
A
MET
1
1
Y
1
A
GLY
126
A
GLY
2
1
Y
1
A
SER
127
A
SER
3
1
Y
1
A
SER
128
A
SER
4
1
Y
1
A
HIS
129
A
HIS
5
1
Y
1
A
HIS
130
A
HIS
6
1
Y
1
A
HIS
131
A
HIS
7
1
Y
1
A
HIS
132
A
HIS
8
1
Y
1
A
HIS
133
A
HIS
9
1
Y
1
A
HIS
134
A
HIS
10
1
Y
1
A
SER
135
A
SER
11
1
Y
1
A
SER
136
A
SER
12
1
Y
1
A
GLY
137
A
GLY
13
1
Y
1
A
LEU
138
A
LEU
14
1
Y
1
A
VAL
139
A
VAL
15
1
Y
1
A
PRO
140
A
PRO
16
1
Y
1
A
ARG
141
A
ARG
17
1
Y
1
A
GLY
142
A
GLY
18
1
Y
1
A
SER
143
A
SER
19
1
Y
1
A
HIS
144
A
HIS
20
1
Y
1
A
MET
145
A
MET
21
1
Y
1
A
ALA
146
A
ALA
22
1
Y
1
A
SER
147
A
SER
23
1
Y
1
A
MET
148
A
MET
24
1
Y
1
A
THR
149
A
THR
25
1
Y
1
A
GLY
150
A
GLY
26
1
Y
1
A
GLY
151
A
GLY
27
1
Y
1
A
GLN
152
A
GLN
28
1
Y
1
A
GLN
153
A
GLN
29
1
Y
1
A
GLY
154
A
GLY
30
1
Y
1
A
ARG
155
A
ARG
31
1
Y
1
A
ASP
156
A
ASP
32
1
Y
1
A
PRO
157
A
PRO
33
1
Y
1
A
PHE
158
A
PHE
34
1
Y
1
A
GLU
159
A
GLU
35
1
Y
1
A
THR
348
A
THR
224
1
Y
1
A
PRO
349
A
PRO
225
1
Y
1
A
GLY
350
A
GLY
226
1
Y
1
A
LEU
351
A
LEU
227
1
Y
1
A
ARG
352
A
ARG
228
1
Y
1
A
ASP
353
A
ASP
229
1
Y
1
A
ASN
354
A
ASN
230
1
Y
1
A
GLN
355
A
GLN
231
1
Y
1
A
LYS
568
A
LYS
414
1
Y
1
A
SER
569
A
SER
415
1
Y
1
A
LYS
213
48.73
-127.91
1
A
TYR
528
-137.37
-66.60
45.511
1.22
0.61
0.00
1.22
0.00
-1.83
0.948
0.945
0.24807
0.2122
0.2126
0.2122
2.0
50
802
41320
37754
2.1
91.37
4.209
0.119
RANDOM
1
THROUGHOUT
1.5
MOLECULAR REPLACEMENT
0.162
0.143
0.80
0.80
1.20
PDB ENTRY 1TV5
MAXIMUM LIKELIHOOD
MASK
2.0
50
124
3137
79
0
2934
0.011
0.022
3068
1.308
1.997
4135
6.367
5.000
369
37.658
25.515
136
15.240
15.000
567
21.719
15.000
10
0.095
0.200
456
0.005
0.020
2252
0.209
0.200
1401
0.309
0.200
2120
0.131
0.200
136
0.322
0.200
36
0.081
0.200
5
0.816
1.500
1906
1.383
2.000
2965
1.747
3.000
1386
2.728
4.500
1169
2.06
1114
20
2
50
3I65
45761
42194
1.9
1.9
0.058
1
45
12
91.5
0.515
2.0
2.06
1.5
68
data collection
HKL-2000
phasing
PHASER
refinement
REFMAC
5.5.0072
data reduction
HKL-2000
data scaling
HKL-2000
Plasmodium falciparum dihydroorotate dehydrogenase bound with triazolopyrimidine-based inhibitor DSM1
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
ASN
162
A
ASN
38
HELX_P
A
ILE
179
A
ILE
55
1
1
18
A
ASP
180
A
ASP
56
HELX_P
A
TYR
194
A
TYR
70
1
2
15
A
SER
205
A
SER
81
HELX_P
A
CYS
209
A
CYS
85
5
3
5
A
CYS
233
A
CYS
109
HELX_P
A
LYS
239
A
LYS
115
1
4
7
A
GLY
282
A
GLY
158
HELX_P
A
GLU
298
A
GLU
174
1
5
17
A
ASP
300
A
ASP
176
HELX_P
A
SER
304
A
SER
180
5
6
5
A
ASN
320
A
ASN
196
HELX_P
A
GLY
333
A
GLY
209
1
7
14
A
ARG
334
A
ARG
210
HELX_P
A
ALA
336
A
ALA
212
5
8
3
A
ALA
357
A
ALA
233
HELX_P
A
ASN
378
A
ASN
254
1
9
22
A
ASN
381
A
ASN
257
HELX_P
A
TRP
416
A
TRP
262
1
10
6
A
ASN
435
A
ASN
281
HELX_P
A
ASN
450
A
ASN
296
1
11
16
A
ILE
466
A
ILE
312
HELX_P
A
GLU
470
A
GLU
316
5
12
5
A
LEU
481
A
LEU
327
HELX_P
A
THR
496
A
THR
342
1
13
16
A
SER
510
A
SER
356
HELX_P
A
GLY
521
A
GLY
367
1
14
12
A
TYR
528
A
TYR
374
HELX_P
A
GLY
535
A
GLY
381
1
15
8
A
LYS
537
A
LYS
383
HELX_P
A
ARG
553
A
ARG
399
1
16
17
A
LEU
558
A
LEU
404
HELX_P
A
ILE
562
A
ILE
408
5
17
5
OXIDOREDUCTASE
Plasmodium falciparum, dihydroorotate dehydrogenase, triazolopyrimidine, inhibitor, DSM1, FAD, Flavoprotein, Membrane, Mitochondrion, Mitochondrion inner membrane, Oxidoreductase, Pyrimidine biosynthesis, Transit peptide
A
GLY
248
A
GLY
124
1
A
THR
249
A
THR
125
2.80
A
LYS
260
A
LYS
136
1
A
PRO
261
A
PRO
137
-4.79
A
ILE
456
A
ILE
302
1
A
SER
457
A
SER
303
2.92
A
SER
505
A
SER
351
1
A
GLY
506
A
GLY
352
-21.13
PYRD_PLAF7
UNP
1
158
Q08210
FESYNPEFFLYDIFLKFCLKYIDGEICHDLFLLLGKYNILPYDTSNDSIYACTNIKHLDFINPFGVAAGFDKNGVCIDSI
LKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFRKRQEEDKLLSKHIVGVSIGKNKD
TVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKN
NFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVS
GAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYN
LKEAIGRKHSKS
158
569
3I65
158
569
Q08210
A
1
34
415
1
expression tag
MET
125
3I65
A
Q08210
UNP
1
1
expression tag
GLY
126
3I65
A
Q08210
UNP
2
1
expression tag
SER
127
3I65
A
Q08210
UNP
3
1
expression tag
SER
128
3I65
A
Q08210
UNP
4
1
expression tag
HIS
129
3I65
A
Q08210
UNP
5
1
expression tag
HIS
130
3I65
A
Q08210
UNP
6
1
expression tag
HIS
131
3I65
A
Q08210
UNP
7
1
expression tag
HIS
132
3I65
A
Q08210
UNP
8
1
expression tag
HIS
133
3I65
A
Q08210
UNP
9
1
expression tag
HIS
134
3I65
A
Q08210
UNP
10
1
expression tag
SER
135
3I65
A
Q08210
UNP
11
1
expression tag
SER
136
3I65
A
Q08210
UNP
12
1
expression tag
GLY
137
3I65
A
Q08210
UNP
13
1
expression tag
LEU
138
3I65
A
Q08210
UNP
14
1
expression tag
VAL
139
3I65
A
Q08210
UNP
15
1
expression tag
PRO
140
3I65
A
Q08210
UNP
16
1
expression tag
ARG
141
3I65
A
Q08210
UNP
17
1
expression tag
GLY
142
3I65
A
Q08210
UNP
18
1
expression tag
SER
143
3I65
A
Q08210
UNP
19
1
expression tag
HIS
144
3I65
A
Q08210
UNP
20
1
expression tag
MET
145
3I65
A
Q08210
UNP
21
1
expression tag
ALA
146
3I65
A
Q08210
UNP
22
1
expression tag
SER
147
3I65
A
Q08210
UNP
23
1
expression tag
MET
148
3I65
A
Q08210
UNP
24
1
expression tag
THR
149
3I65
A
Q08210
UNP
25
1
expression tag
GLY
150
3I65
A
Q08210
UNP
26
1
expression tag
GLY
151
3I65
A
Q08210
UNP
27
1
expression tag
GLN
152
3I65
A
Q08210
UNP
28
1
expression tag
GLN
153
3I65
A
Q08210
UNP
29
1
expression tag
GLY
154
3I65
A
Q08210
UNP
30
1
expression tag
ARG
155
3I65
A
Q08210
UNP
31
1
expression tag
ASP
156
3I65
A
Q08210
UNP
32
1
expression tag
PRO
157
3I65
A
Q08210
UNP
33
1
SER
deletion
3I65
A
Q08210
UNP
384
1
THR
deletion
3I65
A
Q08210
UNP
385
1
TYR
deletion
3I65
A
Q08210
UNP
386
1
ASN
deletion
3I65
A
Q08210
UNP
387
1
GLU
deletion
3I65
A
Q08210
UNP
388
1
ASP
deletion
3I65
A
Q08210
UNP
389
1
ASN
deletion
3I65
A
Q08210
UNP
390
1
LYS
deletion
3I65
A
Q08210
UNP
391
1
ILE
deletion
3I65
A
Q08210
UNP
392
1
VAL
deletion
3I65
A
Q08210
UNP
393
1
GLU
deletion
3I65
A
Q08210
UNP
394
1
LYS
deletion
3I65
A
Q08210
UNP
395
1
LYS
deletion
3I65
A
Q08210
UNP
396
1
ASN
deletion
3I65
A
Q08210
UNP
397
1
ASN
deletion
3I65
A
Q08210
UNP
398
1
PHE
deletion
3I65
A
Q08210
UNP
399
1
ASN
deletion
3I65
A
Q08210
UNP
400
1
LYS
deletion
3I65
A
Q08210
UNP
401
1
ASN
deletion
3I65
A
Q08210
UNP
402
1
ASN
deletion
3I65
A
Q08210
UNP
403
1
SER
deletion
3I65
A
Q08210
UNP
404
1
HIS
deletion
3I65
A
Q08210
UNP
405
1
MET
deletion
3I65
A
Q08210
UNP
406
1
MET
deletion
3I65
A
Q08210
UNP
407
1
LYS
deletion
3I65
A
Q08210
UNP
408
1
ASP
deletion
3I65
A
Q08210
UNP
409
1
ALA
deletion
3I65
A
Q08210
UNP
410
1
LYS
deletion
3I65
A
Q08210
UNP
411
1
ASP
deletion
3I65
A
Q08210
UNP
412
1
ASN
deletion
3I65
A
Q08210
UNP
413
2
9
3
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
THR
210
A
THR
86
A
ILE
212
A
ILE
88
A
LEU
215
A
LEU
91
A
PHE
217
A
PHE
93
A
PHE
221
A
PHE
97
A
VAL
223
A
VAL
99
A
PHE
244
A
PHE
120
A
ILE
250
A
ILE
126
A
ILE
307
A
ILE
183
A
ILE
312
A
ILE
188
A
TYR
338
A
TYR
214
A
ASN
342
A
ASN
218
A
LEU
425
A
LEU
271
A
LEU
430
A
LEU
276
A
GLY
453
A
GLY
299
A
ILE
456
A
ILE
302
A
ILE
502
A
ILE
348
A
ALA
504
A
ALA
350
A
ALA
522
A
ALA
368
A
LEU
527
A
LEU
373
A
PHE
221
A
PHE
97
A
VAL
223
A
VAL
99
A
ILE
263
A
ILE
139
A
ASP
266
A
ASP
142
A
SER
271
A
SER
147
A
ASN
274
A
ASN
150
A
GLY
475
A
GLY
321
A
GLY
478
A
GLY
324
BINDING SITE FOR RESIDUE JZ8 A 1001
A
JZ8
1001
Software
12
BINDING SITE FOR RESIDUE FMN A 1002
A
FMN
1002
Software
22
BINDING SITE FOR RESIDUE ORO A 1003
A
ORO
1003
Software
11
BINDING SITE FOR RESIDUE LDA A 1004
A
LDA
1004
Software
14
A
HOH
15
F
HOH
12
1_555
A
GLY
181
A
GLY
57
12
1_555
A
CYS
184
A
CYS
60
12
1_555
A
HIS
185
A
HIS
61
12
1_555
A
PHE
188
A
PHE
64
12
1_555
A
LEU
189
A
LEU
65
12
1_555
A
LEU
197
A
LEU
73
12
1_555
A
PHE
227
A
PHE
103
12
1_555
A
ARG
265
A
ARG
141
12
1_555
A
LEU
531
A
LEU
377
12
1_555
A
VAL
532
A
VAL
378
12
1_555
A
MET
536
A
MET
382
12
1_555
A
HOH
11
F
HOH
22
1_555
A
HOH
13
F
HOH
22
1_555
A
HOH
20
F
HOH
22
1_555
A
ALA
224
A
ALA
100
22
1_555
A
ALA
225
A
ALA
101
22
1_555
A
GLY
226
A
GLY
102
22
1_555
A
LYS
229
A
LYS
105
22
1_555
A
THR
249
A
THR
125
22
1_555
A
ASN
274
A
ASN
150
22
1_555
A
ASN
342
A
ASN
218
22
1_555
A
LYS
429
A
LYS
275
22
1_555
A
SER
457
A
SER
303
22
1_555
A
ASN
458
A
ASN
304
22
1_555
A
SER
477
A
SER
323
22
1_555
A
GLY
478
A
GLY
324
22
1_555
A
LEU
481
A
LEU
327
22
1_555
A
SER
505
A
SER
351
22
1_555
A
GLY
506
A
GLY
352
22
1_555
A
GLY
507
A
GLY
353
22
1_555
A
TYR
528
A
TYR
374
22
1_555
A
SER
529
A
SER
375
22
1_555
A
ORO
1003
D
ORO
22
1_555
A
LYS
229
A
LYS
105
11
1_555
A
ASN
274
A
ASN
150
11
1_555
A
CYS
276
A
CYS
152
11
1_555
A
GLY
277
A
GLY
153
11
1_555
A
PHE
278
A
PHE
154
11
1_555
A
ASN
342
A
ASN
218
11
1_555
A
SER
345
A
SER
221
11
1_555
A
ASN
347
A
ASN
223
11
1_555
A
ASN
458
A
ASN
304
11
1_555
A
THR
459
A
THR
305
11
1_555
A
FMN
1002
C
FMN
11
1_555
A
HOH
2
F
HOH
14
6_554
A
HOH
39
F
HOH
14
6_554
A
HOH
47
F
HOH
14
1_555
A
ASP
180
A
ASP
56
14
6_554
A
PRO
261
A
PRO
137
14
6_554
A
ILE
263
A
ILE
139
14
6_554
A
PHE
264
A
PHE
140
14
6_554
A
ARG
265
A
ARG
141
14
6_554
A
ASP
266
A
ASP
142
14
6_554
A
VAL
267
A
VAL
143
14
6_554
A
GLU
268
A
GLU
144
14
6_554
A
GLU
375
A
GLU
251
14
1_555
A
ASN
381
A
ASN
257
14
1_555
A
ASP
382
A
ASP
258
14
1_555
172
P 64