0.011384
0.006573
0.000000
0.000000
0.013145
0.000000
0.000000
0.000000
0.009635
0.000000
0.000000
0.000000
Brandao, T.A.S.
Johnson, S.J.
Hengge, A.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
87.840
87.840
103.790
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
O4 V -3
114.939
VANADATE ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
S
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
S
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
O
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
R
C
N
323
N
O
N
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
N
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
C
N
366
N
N
N
367
N
O
N
368
N
O
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
N
393
N
O
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
N
411
N
C
N
412
N
C
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
V
N
426
N
O
N
427
N
O
N
428
N
O
N
429
N
O
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
sing
Y
339
N
doub
N
340
N
sing
Y
341
N
doub
N
342
N
sing
Y
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
Y
377
N
doub
Y
378
N
sing
Y
379
N
sing
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
doub
N
384
N
sing
Y
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
285
15874
15883
10.1074/jbc.M109.066951
20236928
Insights into the reaction of protein-tyrosine phosphatase 1B: crystal structures for transition state analogs of both catalytic steps.
2010
10.2210/pdb3i80/pdb
pdb_00003i80
100
1
mirrors
IMAGE PLATE
2008-09-06
RIGAKU RAXIS IV
OSMIC BLUE OPTICS
SINGLE WAVELENGTH
x-ray
1
1.5418
1.0
90676
0.084
1.01
2.250
38.040
22453
100.00
4.01
1.5418
ROTATING ANODE
RIGAKU RU200
37365.637
Tyrosine-protein phosphatase non-receptor type 1
3.1.3.48
Residues 1-321
1
man
polymer
114.939
VANADATE ION
1
syn
non-polymer
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
1
syn
non-polymer
92.094
GLYCEROL
3
syn
non-polymer
18.015
water
231
nat
water
Protein-tyrosine phosphatase 1B, PTP-1B
no
no
MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDNDYINASLIKMEEAQRS
YILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLEL
ENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD
PSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHEDLEPPPEHIPPPPRPPKRILEPH
N
MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDNDYINASLIKMEEAQRS
YILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLEL
ENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD
PSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHEDLEPPPEHIPPPPRPPKRILEPH
N
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
PTP1B, PTPN1
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)
plasmid
pEt-19b
1
3.09
60.24
VAPOR DIFFUSION, SITTING DROP
7.5
Drop: 2 uL of protein solution, 0.5 uL sucrose 30% (w/v) and 3 uL of precipitant solution (0.1 M HEPES pH 7.5, 0.2 M magnesium acetate and 18-20% polyethylene glycol 8000). Well: 500 uL of precipitant solution. The protein solution was prepared as follows: 9 uL of 50 mM of Na3VO4 and 1 uL of 50 mM of DADEYL peptide (at pH 8.5-9.0) were mixed and allowed to react for 1-1.5 hour; then, 50 uL of native PTP1B (12 mg/mL in 10 mM Tris pH 7.5, 25 mM NaCl, 0.2 mM EDTA and 3 mM DTT) was added and the solution used immediately for crystallization. VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-03-16
1
1
2011-07-13
1
2
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PROTEIN TYROSINE PHOSPHATASE 1B APO FORM
PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH PHOSPHOTYROSINE-CONTAINING HEXA-PEPTIDE (DADEPYL-NH2)
PROTEIN TYROSINE PHOSPHATASE 1B CYSTEINYL-PHOSPHATE INTERMEDIATE
PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH TUNGSTATE
Protein Tyrosine Phosphatase 1B - Transition state analog for the first catalytic step
RCSB
Y
RCSB
2009-07-09
REL
REL
0.031
0.710
99.80
3.90
89
0.037
0.700
100.00
4.02
86
0.068
0.850
99.90
4.00
78
0.130
0.990
100.00
3.99
84
0.205
1.060
100.00
4.00
62
0.282
1.130
99.90
4.01
84
0.343
1.140
100.00
4.04
62
0.399
1.170
100.00
4.04
41
0.423
1.150
100.00
4.04
48
0.473
1.180
99.90
4.04
47
VO4
VANADATE ION
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
GOL
GLYCEROL
HOH
water
1SUG
PDB ENTRY 1SUG
PDB
experimental model
VO4
1
2
VO4
VO4
322
A
TRS
2
3
TRS
TRS
323
A
GOL
3
4
GOL
GOL
324
A
GOL
4
4
GOL
GOL
325
A
GOL
5
4
GOL
GOL
326
A
HOH
1
5
HOH
HOH
327
A
HOH
2
5
HOH
HOH
328
A
HOH
3
5
HOH
HOH
329
A
HOH
4
5
HOH
HOH
330
A
HOH
5
5
HOH
HOH
331
A
HOH
6
5
HOH
HOH
332
A
HOH
7
5
HOH
HOH
333
A
HOH
8
5
HOH
HOH
334
A
HOH
9
5
HOH
HOH
335
A
HOH
10
5
HOH
HOH
336
A
HOH
11
5
HOH
HOH
337
A
HOH
12
5
HOH
HOH
338
A
HOH
13
5
HOH
HOH
339
A
HOH
14
5
HOH
HOH
340
A
HOH
15
5
HOH
HOH
341
A
HOH
16
5
HOH
HOH
342
A
HOH
17
5
HOH
HOH
343
A
HOH
18
5
HOH
HOH
344
A
HOH
19
5
HOH
HOH
345
A
HOH
20
5
HOH
HOH
346
A
HOH
21
5
HOH
HOH
347
A
HOH
22
5
HOH
HOH
348
A
HOH
23
5
HOH
HOH
349
A
HOH
24
5
HOH
HOH
350
A
HOH
25
5
HOH
HOH
351
A
HOH
26
5
HOH
HOH
352
A
HOH
27
5
HOH
HOH
353
A
HOH
28
5
HOH
HOH
354
A
HOH
29
5
HOH
HOH
355
A
HOH
30
5
HOH
HOH
356
A
HOH
31
5
HOH
HOH
357
A
HOH
32
5
HOH
HOH
358
A
HOH
33
5
HOH
HOH
359
A
HOH
34
5
HOH
HOH
360
A
HOH
35
5
HOH
HOH
361
A
HOH
36
5
HOH
HOH
362
A
HOH
37
5
HOH
HOH
363
A
HOH
38
5
HOH
HOH
364
A
HOH
39
5
HOH
HOH
365
A
HOH
40
5
HOH
HOH
366
A
HOH
41
5
HOH
HOH
367
A
HOH
42
5
HOH
HOH
368
A
HOH
43
5
HOH
HOH
369
A
HOH
44
5
HOH
HOH
370
A
HOH
45
5
HOH
HOH
371
A
HOH
46
5
HOH
HOH
372
A
HOH
47
5
HOH
HOH
373
A
HOH
48
5
HOH
HOH
374
A
HOH
49
5
HOH
HOH
375
A
HOH
50
5
HOH
HOH
376
A
HOH
51
5
HOH
HOH
377
A
HOH
52
5
HOH
HOH
378
A
HOH
53
5
HOH
HOH
379
A
HOH
54
5
HOH
HOH
380
A
HOH
55
5
HOH
HOH
381
A
HOH
56
5
HOH
HOH
382
A
HOH
57
5
HOH
HOH
383
A
HOH
58
5
HOH
HOH
384
A
HOH
59
5
HOH
HOH
385
A
HOH
60
5
HOH
HOH
386
A
HOH
61
5
HOH
HOH
387
A
HOH
62
5
HOH
HOH
388
A
HOH
63
5
HOH
HOH
389
A
HOH
64
5
HOH
HOH
390
A
HOH
65
5
HOH
HOH
391
A
HOH
66
5
HOH
HOH
392
A
HOH
67
5
HOH
HOH
393
A
HOH
68
5
HOH
HOH
394
A
HOH
69
5
HOH
HOH
395
A
HOH
70
5
HOH
HOH
396
A
HOH
71
5
HOH
HOH
397
A
HOH
72
5
HOH
HOH
398
A
HOH
73
5
HOH
HOH
399
A
HOH
74
5
HOH
HOH
400
A
HOH
75
5
HOH
HOH
401
A
HOH
76
5
HOH
HOH
402
A
HOH
77
5
HOH
HOH
403
A
HOH
78
5
HOH
HOH
404
A
HOH
79
5
HOH
HOH
405
A
HOH
80
5
HOH
HOH
406
A
HOH
81
5
HOH
HOH
407
A
HOH
82
5
HOH
HOH
408
A
HOH
83
5
HOH
HOH
409
A
HOH
84
5
HOH
HOH
410
A
HOH
85
5
HOH
HOH
411
A
HOH
86
5
HOH
HOH
412
A
HOH
87
5
HOH
HOH
413
A
HOH
88
5
HOH
HOH
414
A
HOH
89
5
HOH
HOH
415
A
HOH
90
5
HOH
HOH
416
A
HOH
91
5
HOH
HOH
417
A
HOH
92
5
HOH
HOH
418
A
HOH
93
5
HOH
HOH
419
A
HOH
94
5
HOH
HOH
420
A
HOH
95
5
HOH
HOH
421
A
HOH
96
5
HOH
HOH
422
A
HOH
97
5
HOH
HOH
423
A
HOH
98
5
HOH
HOH
424
A
HOH
99
5
HOH
HOH
425
A
HOH
100
5
HOH
HOH
426
A
HOH
101
5
HOH
HOH
427
A
HOH
102
5
HOH
HOH
428
A
HOH
103
5
HOH
HOH
429
A
HOH
104
5
HOH
HOH
430
A
HOH
105
5
HOH
HOH
431
A
HOH
106
5
HOH
HOH
432
A
HOH
107
5
HOH
HOH
433
A
HOH
108
5
HOH
HOH
434
A
HOH
109
5
HOH
HOH
435
A
HOH
110
5
HOH
HOH
436
A
HOH
111
5
HOH
HOH
437
A
HOH
112
5
HOH
HOH
438
A
HOH
113
5
HOH
HOH
439
A
HOH
114
5
HOH
HOH
440
A
HOH
115
5
HOH
HOH
441
A
HOH
116
5
HOH
HOH
442
A
HOH
117
5
HOH
HOH
443
A
HOH
118
5
HOH
HOH
444
A
HOH
119
5
HOH
HOH
445
A
HOH
120
5
HOH
HOH
446
A
HOH
121
5
HOH
HOH
447
A
HOH
122
5
HOH
HOH
448
A
HOH
123
5
HOH
HOH
449
A
HOH
124
5
HOH
HOH
450
A
HOH
125
5
HOH
HOH
451
A
HOH
126
5
HOH
HOH
452
A
HOH
127
5
HOH
HOH
453
A
HOH
128
5
HOH
HOH
454
A
HOH
129
5
HOH
HOH
455
A
HOH
130
5
HOH
HOH
456
A
HOH
131
5
HOH
HOH
457
A
HOH
132
5
HOH
HOH
458
A
HOH
133
5
HOH
HOH
459
A
HOH
134
5
HOH
HOH
460
A
HOH
135
5
HOH
HOH
461
A
HOH
136
5
HOH
HOH
462
A
HOH
137
5
HOH
HOH
463
A
HOH
138
5
HOH
HOH
464
A
HOH
139
5
HOH
HOH
465
A
HOH
140
5
HOH
HOH
466
A
HOH
141
5
HOH
HOH
467
A
HOH
142
5
HOH
HOH
468
A
HOH
143
5
HOH
HOH
469
A
HOH
144
5
HOH
HOH
470
A
HOH
145
5
HOH
HOH
471
A
HOH
146
5
HOH
HOH
472
A
HOH
147
5
HOH
HOH
473
A
HOH
148
5
HOH
HOH
474
A
HOH
149
5
HOH
HOH
475
A
HOH
150
5
HOH
HOH
476
A
HOH
151
5
HOH
HOH
477
A
HOH
152
5
HOH
HOH
478
A
HOH
153
5
HOH
HOH
479
A
HOH
154
5
HOH
HOH
480
A
HOH
155
5
HOH
HOH
481
A
HOH
156
5
HOH
HOH
482
A
HOH
157
5
HOH
HOH
483
A
HOH
158
5
HOH
HOH
484
A
HOH
159
5
HOH
HOH
485
A
HOH
160
5
HOH
HOH
486
A
HOH
161
5
HOH
HOH
487
A
HOH
162
5
HOH
HOH
488
A
HOH
163
5
HOH
HOH
489
A
HOH
164
5
HOH
HOH
490
A
HOH
165
5
HOH
HOH
491
A
HOH
166
5
HOH
HOH
492
A
HOH
167
5
HOH
HOH
493
A
HOH
168
5
HOH
HOH
494
A
HOH
169
5
HOH
HOH
495
A
HOH
170
5
HOH
HOH
496
A
HOH
171
5
HOH
HOH
497
A
HOH
172
5
HOH
HOH
498
A
HOH
173
5
HOH
HOH
499
A
HOH
174
5
HOH
HOH
500
A
HOH
175
5
HOH
HOH
501
A
HOH
176
5
HOH
HOH
502
A
HOH
177
5
HOH
HOH
503
A
HOH
178
5
HOH
HOH
504
A
HOH
179
5
HOH
HOH
505
A
HOH
180
5
HOH
HOH
506
A
HOH
181
5
HOH
HOH
507
A
HOH
182
5
HOH
HOH
508
A
HOH
183
5
HOH
HOH
509
A
HOH
184
5
HOH
HOH
510
A
HOH
185
5
HOH
HOH
511
A
HOH
186
5
HOH
HOH
512
A
HOH
187
5
HOH
HOH
513
A
HOH
188
5
HOH
HOH
514
A
HOH
189
5
HOH
HOH
515
A
HOH
190
5
HOH
HOH
516
A
HOH
191
5
HOH
HOH
517
A
HOH
192
5
HOH
HOH
518
A
HOH
193
5
HOH
HOH
519
A
HOH
194
5
HOH
HOH
520
A
HOH
195
5
HOH
HOH
521
A
HOH
196
5
HOH
HOH
522
A
HOH
197
5
HOH
HOH
523
A
HOH
198
5
HOH
HOH
524
A
HOH
199
5
HOH
HOH
525
A
HOH
200
5
HOH
HOH
526
A
HOH
201
5
HOH
HOH
527
A
HOH
202
5
HOH
HOH
528
A
HOH
203
5
HOH
HOH
529
A
HOH
204
5
HOH
HOH
530
A
HOH
205
5
HOH
HOH
531
A
HOH
206
5
HOH
HOH
532
A
HOH
207
5
HOH
HOH
533
A
HOH
208
5
HOH
HOH
534
A
HOH
209
5
HOH
HOH
535
A
HOH
210
5
HOH
HOH
536
A
HOH
211
5
HOH
HOH
537
A
HOH
212
5
HOH
HOH
538
A
HOH
213
5
HOH
HOH
539
A
HOH
214
5
HOH
HOH
540
A
HOH
215
5
HOH
HOH
541
A
HOH
216
5
HOH
HOH
542
A
HOH
217
5
HOH
HOH
543
A
HOH
218
5
HOH
HOH
544
A
HOH
219
5
HOH
HOH
545
A
HOH
220
5
HOH
HOH
546
A
HOH
221
5
HOH
HOH
547
A
HOH
222
5
HOH
HOH
548
A
HOH
223
5
HOH
HOH
549
A
HOH
224
5
HOH
HOH
550
A
HOH
225
5
HOH
HOH
551
A
HOH
226
5
HOH
HOH
552
A
HOH
227
5
HOH
HOH
553
A
HOH
228
5
HOH
HOH
554
A
HOH
229
5
HOH
HOH
555
A
HOH
230
5
HOH
HOH
556
A
HOH
231
5
HOH
HOH
557
A
2.500
2.500
38.040
38.040
Phaser MODE: MR_AUTO
n
1
1
A
GLU
2
n
2
GLU
2
A
MET
3
n
3
MET
3
A
GLU
4
n
4
GLU
4
A
LYS
5
n
5
LYS
5
A
GLU
6
n
6
GLU
6
A
PHE
7
n
7
PHE
7
A
GLU
8
n
8
GLU
8
A
GLN
9
n
9
GLN
9
A
ILE
10
n
10
ILE
10
A
ASP
11
n
11
ASP
11
A
LYS
12
n
12
LYS
12
A
SER
13
n
13
SER
13
A
GLY
14
n
14
GLY
14
A
SER
15
n
15
SER
15
A
TRP
16
n
16
TRP
16
A
ALA
17
n
17
ALA
17
A
ALA
18
n
18
ALA
18
A
ILE
19
n
19
ILE
19
A
TYR
20
n
20
TYR
20
A
GLN
21
n
21
GLN
21
A
ASP
22
n
22
ASP
22
A
ILE
23
n
23
ILE
23
A
ARG
24
n
24
ARG
24
A
HIS
25
n
25
HIS
25
A
GLU
26
n
26
GLU
26
A
ALA
27
n
27
ALA
27
A
SER
28
n
28
SER
28
A
ASP
29
n
29
ASP
29
A
PHE
30
n
30
PHE
30
A
PRO
31
n
31
PRO
31
A
CYS
32
n
32
CYS
32
A
ARG
33
n
33
ARG
33
A
VAL
34
n
34
VAL
34
A
ALA
35
n
35
ALA
35
A
LYS
36
n
36
LYS
36
A
LEU
37
n
37
LEU
37
A
PRO
38
n
38
PRO
38
A
LYS
39
n
39
LYS
39
A
ASN
40
n
40
ASN
40
A
LYS
41
n
41
LYS
41
A
ASN
42
n
42
ASN
42
A
ARG
43
n
43
ARG
43
A
ASN
44
n
44
ASN
44
A
ARG
45
n
45
ARG
45
A
TYR
46
n
46
TYR
46
A
ARG
47
n
47
ARG
47
A
ASP
48
n
48
ASP
48
A
VAL
49
n
49
VAL
49
A
SER
50
n
50
SER
50
A
PRO
51
n
51
PRO
51
A
PHE
52
n
52
PHE
52
A
ASP
53
n
53
ASP
53
A
HIS
54
n
54
HIS
54
A
SER
55
n
55
SER
55
A
ARG
56
n
56
ARG
56
A
ILE
57
n
57
ILE
57
A
LYS
58
n
58
LYS
58
A
LEU
59
n
59
LEU
59
A
HIS
60
n
60
HIS
60
A
GLN
61
n
61
GLN
61
A
GLU
62
n
62
GLU
62
A
ASP
63
n
63
ASP
63
A
ASN
64
n
64
ASN
64
A
ASP
65
n
65
ASP
65
A
TYR
66
n
66
TYR
66
A
ILE
67
n
67
ILE
67
A
ASN
68
n
68
ASN
68
A
ALA
69
n
69
ALA
69
A
SER
70
n
70
SER
70
A
LEU
71
n
71
LEU
71
A
ILE
72
n
72
ILE
72
A
LYS
73
n
73
LYS
73
A
MET
74
n
74
MET
74
A
GLU
75
n
75
GLU
75
A
GLU
76
n
76
GLU
76
A
ALA
77
n
77
ALA
77
A
GLN
78
n
78
GLN
78
A
ARG
79
n
79
ARG
79
A
SER
80
n
80
SER
80
A
TYR
81
n
81
TYR
81
A
ILE
82
n
82
ILE
82
A
LEU
83
n
83
LEU
83
A
THR
84
n
84
THR
84
A
GLN
85
n
85
GLN
85
A
GLY
86
n
86
GLY
86
A
PRO
87
n
87
PRO
87
A
LEU
88
n
88
LEU
88
A
PRO
89
n
89
PRO
89
A
ASN
90
n
90
ASN
90
A
THR
91
n
91
THR
91
A
CYS
92
n
92
CYS
92
A
GLY
93
n
93
GLY
93
A
HIS
94
n
94
HIS
94
A
PHE
95
n
95
PHE
95
A
TRP
96
n
96
TRP
96
A
GLU
97
n
97
GLU
97
A
MET
98
n
98
MET
98
A
VAL
99
n
99
VAL
99
A
TRP
100
n
100
TRP
100
A
GLU
101
n
101
GLU
101
A
GLN
102
n
102
GLN
102
A
LYS
103
n
103
LYS
103
A
SER
104
n
104
SER
104
A
ARG
105
n
105
ARG
105
A
GLY
106
n
106
GLY
106
A
VAL
107
n
107
VAL
107
A
VAL
108
n
108
VAL
108
A
MET
109
n
109
MET
109
A
LEU
110
n
110
LEU
110
A
ASN
111
n
111
ASN
111
A
ARG
112
n
112
ARG
112
A
VAL
113
n
113
VAL
113
A
MET
114
n
114
MET
114
A
GLU
115
n
115
GLU
115
A
LYS
116
n
116
LYS
116
A
GLY
117
n
117
GLY
117
A
SER
118
n
118
SER
118
A
LEU
119
n
119
LEU
119
A
LYS
120
n
120
LYS
120
A
CYS
121
n
121
CYS
121
A
ALA
122
n
122
ALA
122
A
GLN
123
n
123
GLN
123
A
TYR
124
n
124
TYR
124
A
TRP
125
n
125
TRP
125
A
PRO
126
n
126
PRO
126
A
GLN
127
n
127
GLN
127
A
LYS
128
n
128
LYS
128
A
GLU
129
n
129
GLU
129
A
GLU
130
n
130
GLU
130
A
LYS
131
n
131
LYS
131
A
GLU
132
n
132
GLU
132
A
MET
133
n
133
MET
133
A
ILE
134
n
134
ILE
134
A
PHE
135
n
135
PHE
135
A
GLU
136
n
136
GLU
136
A
ASP
137
n
137
ASP
137
A
THR
138
n
138
THR
138
A
ASN
139
n
139
ASN
139
A
LEU
140
n
140
LEU
140
A
LYS
141
n
141
LYS
141
A
LEU
142
n
142
LEU
142
A
THR
143
n
143
THR
143
A
LEU
144
n
144
LEU
144
A
ILE
145
n
145
ILE
145
A
SER
146
n
146
SER
146
A
GLU
147
n
147
GLU
147
A
ASP
148
n
148
ASP
148
A
ILE
149
n
149
ILE
149
A
LYS
150
n
150
LYS
150
A
SER
151
n
151
SER
151
A
TYR
152
n
152
TYR
152
A
TYR
153
n
153
TYR
153
A
THR
154
n
154
THR
154
A
VAL
155
n
155
VAL
155
A
ARG
156
n
156
ARG
156
A
GLN
157
n
157
GLN
157
A
LEU
158
n
158
LEU
158
A
GLU
159
n
159
GLU
159
A
LEU
160
n
160
LEU
160
A
GLU
161
n
161
GLU
161
A
ASN
162
n
162
ASN
162
A
LEU
163
n
163
LEU
163
A
THR
164
n
164
THR
164
A
THR
165
n
165
THR
165
A
GLN
166
n
166
GLN
166
A
GLU
167
n
167
GLU
167
A
THR
168
n
168
THR
168
A
ARG
169
n
169
ARG
169
A
GLU
170
n
170
GLU
170
A
ILE
171
n
171
ILE
171
A
LEU
172
n
172
LEU
172
A
HIS
173
n
173
HIS
173
A
PHE
174
n
174
PHE
174
A
HIS
175
n
175
HIS
175
A
TYR
176
n
176
TYR
176
A
THR
177
n
177
THR
177
A
THR
178
n
178
THR
178
A
TRP
179
n
179
TRP
179
A
PRO
180
n
180
PRO
180
A
ASP
181
n
181
ASP
181
A
PHE
182
n
182
PHE
182
A
GLY
183
n
183
GLY
183
A
VAL
184
n
184
VAL
184
A
PRO
185
n
185
PRO
185
A
GLU
186
n
186
GLU
186
A
SER
187
n
187
SER
187
A
PRO
188
n
188
PRO
188
A
ALA
189
n
189
ALA
189
A
SER
190
n
190
SER
190
A
PHE
191
n
191
PHE
191
A
LEU
192
n
192
LEU
192
A
ASN
193
n
193
ASN
193
A
PHE
194
n
194
PHE
194
A
LEU
195
n
195
LEU
195
A
PHE
196
n
196
PHE
196
A
LYS
197
n
197
LYS
197
A
VAL
198
n
198
VAL
198
A
ARG
199
n
199
ARG
199
A
GLU
200
n
200
GLU
200
A
SER
201
n
201
SER
201
A
GLY
202
n
202
GLY
202
A
SER
203
n
203
SER
203
A
LEU
204
n
204
LEU
204
A
SER
205
n
205
SER
205
A
PRO
206
n
206
PRO
206
A
GLU
207
n
207
GLU
207
A
HIS
208
n
208
HIS
208
A
GLY
209
n
209
GLY
209
A
PRO
210
n
210
PRO
210
A
VAL
211
n
211
VAL
211
A
VAL
212
n
212
VAL
212
A
VAL
213
n
213
VAL
213
A
HIS
214
n
214
HIS
214
A
CYS
215
n
215
CYS
215
A
SER
216
n
216
SER
216
A
ALA
217
n
217
ALA
217
A
GLY
218
n
218
GLY
218
A
ILE
219
n
219
ILE
219
A
GLY
220
n
220
GLY
220
A
ARG
221
n
221
ARG
221
A
SER
222
n
222
SER
222
A
GLY
223
n
223
GLY
223
A
THR
224
n
224
THR
224
A
PHE
225
n
225
PHE
225
A
CYS
226
n
226
CYS
226
A
LEU
227
n
227
LEU
227
A
ALA
228
n
228
ALA
228
A
ASP
229
n
229
ASP
229
A
THR
230
n
230
THR
230
A
CYS
231
n
231
CYS
231
A
LEU
232
n
232
LEU
232
A
LEU
233
n
233
LEU
233
A
LEU
234
n
234
LEU
234
A
MET
235
n
235
MET
235
A
ASP
236
n
236
ASP
236
A
LYS
237
n
237
LYS
237
A
ARG
238
n
238
ARG
238
A
LYS
239
n
239
LYS
239
A
ASP
240
n
240
ASP
240
A
PRO
241
n
241
PRO
241
A
SER
242
n
242
SER
242
A
SER
243
n
243
SER
243
A
VAL
244
n
244
VAL
244
A
ASP
245
n
245
ASP
245
A
ILE
246
n
246
ILE
246
A
LYS
247
n
247
LYS
247
A
LYS
248
n
248
LYS
248
A
VAL
249
n
249
VAL
249
A
LEU
250
n
250
LEU
250
A
LEU
251
n
251
LEU
251
A
GLU
252
n
252
GLU
252
A
MET
253
n
253
MET
253
A
ARG
254
n
254
ARG
254
A
LYS
255
n
255
LYS
255
A
PHE
256
n
256
PHE
256
A
ARG
257
n
257
ARG
257
A
MET
258
n
258
MET
258
A
GLY
259
n
259
GLY
259
A
LEU
260
n
260
LEU
260
A
ILE
261
n
261
ILE
261
A
GLN
262
n
262
GLN
262
A
THR
263
n
263
THR
263
A
ALA
264
n
264
ALA
264
A
ASP
265
n
265
ASP
265
A
GLN
266
n
266
GLN
266
A
LEU
267
n
267
LEU
267
A
ARG
268
n
268
ARG
268
A
PHE
269
n
269
PHE
269
A
SER
270
n
270
SER
270
A
TYR
271
n
271
TYR
271
A
LEU
272
n
272
LEU
272
A
ALA
273
n
273
ALA
273
A
VAL
274
n
274
VAL
274
A
ILE
275
n
275
ILE
275
A
GLU
276
n
276
GLU
276
A
GLY
277
n
277
GLY
277
A
ALA
278
n
278
ALA
278
A
LYS
279
n
279
LYS
279
A
PHE
280
n
280
PHE
280
A
ILE
281
n
281
ILE
281
A
MET
282
n
282
MET
282
A
GLY
283
n
283
GLY
283
A
ASP
284
n
284
ASP
284
A
SER
285
n
285
SER
285
A
SER
286
n
286
SER
286
A
VAL
287
n
287
VAL
287
A
GLN
288
n
288
GLN
288
A
ASP
289
n
289
ASP
289
A
GLN
290
n
290
GLN
290
A
TRP
291
n
291
TRP
291
A
LYS
292
n
292
LYS
292
A
GLU
293
n
293
GLU
293
A
LEU
294
n
294
LEU
294
A
SER
295
n
295
SER
295
A
HIS
296
n
296
HIS
296
A
GLU
297
n
297
GLU
297
A
ASP
298
n
298
ASP
298
A
LEU
299
n
299
LEU
299
A
n
300
300
A
n
301
301
A
n
302
302
A
n
303
303
A
n
304
304
A
n
305
305
A
n
306
306
A
n
307
307
A
n
308
308
A
n
309
309
A
n
310
310
A
n
311
311
A
n
312
312
A
n
313
313
A
n
314
314
A
n
315
315
A
n
316
316
A
n
317
317
A
n
318
318
A
n
319
319
A
n
320
320
A
n
321
321
A
0.2349
0.1093
-0.0234
-0.2526
-0.1601
0.7558
0.1909
-0.0037
0.1786
0.1318
-0.2408
0.3334
-0.7041
-0.0309
0.0396
0.5274
0.1628
0.0058
0.3974
-0.0364
0.5560
refined
25.1276
-6.9295
-11.4432
X-RAY DIFFRACTION
-0.2457
-0.2889
-0.5868
2.6210
-0.2988
0.3885
0.0483
-0.1692
-0.2221
0.1867
-0.4079
0.7954
-0.0050
-0.5035
0.3378
0.4305
0.0834
0.0924
0.6007
-0.0421
0.5660
refined
19.2224
-22.1096
-6.3151
X-RAY DIFFRACTION
0.0207
0.0484
-0.0838
0.4098
-0.0928
0.0774
0.0671
-0.1220
-0.3263
0.0683
0.0350
0.1964
0.0631
-0.4486
-0.1103
0.1983
-0.0665
-0.0030
0.3878
0.0495
0.3567
refined
26.7305
-42.5679
-8.0040
X-RAY DIFFRACTION
0.7789
0.2584
1.1533
1.0644
-0.6162
1.5685
0.0089
0.0947
-0.2196
-0.2868
0.1533
0.1520
0.3299
-0.3832
-0.1132
0.2759
-0.0324
-0.0135
0.3343
0.0117
0.2884
refined
29.2915
-38.1389
-19.2086
X-RAY DIFFRACTION
0.4160
0.1035
0.1938
-0.0160
-0.5147
1.5341
0.0214
-0.1528
-0.2271
-0.0047
0.0199
-0.0484
-0.1117
0.0133
-0.0380
0.2168
-0.0120
-0.0082
0.3426
-0.0136
0.2620
refined
42.0129
-38.0890
-11.2922
X-RAY DIFFRACTION
0.7168
-1.9428
0.1628
1.9425
-0.8580
3.2758
-0.0371
-0.1132
0.4271
0.0020
-0.0487
0.5087
0.4398
0.7692
0.0708
0.2079
0.0702
0.0379
0.4055
0.0290
0.3243
refined
52.4409
-44.8889
-15.4805
X-RAY DIFFRACTION
-0.1971
-0.0797
0.3549
0.8917
-0.8489
0.8096
0.1096
-0.0026
0.0178
0.0268
-0.0983
-0.1225
-0.1775
0.1421
-0.0005
0.2466
-0.0439
0.0064
0.3713
-0.0065
0.2946
refined
45.9846
-29.3333
-17.5036
X-RAY DIFFRACTION
-0.1671
-0.1802
0.3735
0.0978
0.1221
0.1068
0.1157
-0.0362
-0.0599
-0.0516
0.0954
0.2427
-0.0451
0.0923
-0.2135
0.2903
-0.0166
-0.0194
0.3575
-0.0072
0.3239
refined
35.0571
-27.9198
-18.8289
X-RAY DIFFRACTION
-0.0935
0.2086
0.9435
1.6099
0.3906
0.1096
0.2341
0.0031
-0.0295
-0.2162
0.2337
0.3162
-0.0912
-0.1803
-0.4748
0.4367
0.0631
-0.0252
0.4742
0.0536
0.3515
refined
25.5949
-15.4221
-25.2220
X-RAY DIFFRACTION
1.1938
0.1973
0.0960
1.1818
-0.5527
0.9506
-0.1779
-0.0333
0.0097
-0.0466
0.0585
-0.0850
-0.3069
0.0732
0.1227
0.3365
-0.0511
0.0219
0.3352
-0.0304
0.2792
refined
36.0390
-17.2693
-16.5829
X-RAY DIFFRACTION
A
2
A
16
X-RAY DIFFRACTION
1
(chain A and resid 2:16)
A
17
A
29
X-RAY DIFFRACTION
2
(chain A and resid 17:29)
A
30
A
60
X-RAY DIFFRACTION
3
(chain A and resid 30:60)
A
61
A
81
X-RAY DIFFRACTION
4
(chain A and resid 61:81)
A
82
A
127
X-RAY DIFFRACTION
5
(chain A and resid 82:127)
A
128
A
147
X-RAY DIFFRACTION
6
(chain A and resid 128:147)
A
148
A
202
X-RAY DIFFRACTION
7
(chain A and resid 148:202)
A
203
A
234
X-RAY DIFFRACTION
8
(chain A and resid 203:234)
A
235
A
248
X-RAY DIFFRACTION
9
(chain A and resid 235:248)
A
249
A
299
X-RAY DIFFRACTION
10
(chain A and resid 249:299)
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
72
A
N
ILE
72
A
O
TYR
81
A
O
TYR
81
A
N
ILE
82
A
N
ILE
82
A
O
VAL
213
A
O
VAL
213
A
O
VAL
212
A
O
VAL
212
A
N
VAL
108
A
N
VAL
108
A
N
VAL
107
A
N
VAL
107
A
O
PHE
174
A
O
PHE
174
A
O
ILE
171
A
O
ILE
171
A
N
LEU
158
A
N
LEU
158
A
O
GLU
161
A
O
GLU
161
A
N
LYS
141
A
N
LYS
141
A
O
LEU
142
A
O
LEU
142
A
N
MET
133
A
N
MET
133
A
N
GLU
115
A
N
GLU
115
A
O
SER
118
A
O
SER
118
1
A
MET
1
A
MET
1
1
Y
1
A
GLU
300
A
GLU
300
1
Y
1
A
PRO
301
A
PRO
301
1
Y
1
A
PRO
302
A
PRO
302
1
Y
1
A
PRO
303
A
PRO
303
1
Y
1
A
GLU
304
A
GLU
304
1
Y
1
A
HIS
305
A
HIS
305
1
Y
1
A
ILE
306
A
ILE
306
1
Y
1
A
PRO
307
A
PRO
307
1
Y
1
A
PRO
308
A
PRO
308
1
Y
1
A
PRO
309
A
PRO
309
1
Y
1
A
PRO
310
A
PRO
310
1
Y
1
A
ARG
311
A
ARG
311
1
Y
1
A
PRO
312
A
PRO
312
1
Y
1
A
PRO
313
A
PRO
313
1
Y
1
A
LYS
314
A
LYS
314
1
Y
1
A
ARG
315
A
ARG
315
1
Y
1
A
ILE
316
A
ILE
316
1
Y
1
A
LEU
317
A
LEU
317
1
Y
1
A
GLU
318
A
GLU
318
1
Y
1
A
PRO
319
A
PRO
319
1
Y
1
A
HIS
320
A
HIS
320
1
Y
1
A
ASN
321
A
ASN
321
1
Y
1
A
ASP
63
-53.46
-74.40
1
A
LYS
131
-119.18
74.18
1
A
CYS
215
-125.54
-129.27
1
A
ILE
261
71.61
109.76
143.13
45.377
21.78
-0.669
0.000
0.000
-0.669
-0.000
1.339
0.235
0.199
0.201
0.201
2.250
35.713
1149
22441
22441
5.120
52.790
1.00
0.49
0.831
0.350
RANDOM
1
1.90
MOLECULAR REPLACEMENT
0.900
1.110
PDB ENTRY 1SUG
ML
FLAT BULK SOLVENT MODEL
64.416
0.372
2.250
35.713
231
2696
31
0
2434
0.006
2522
0.939
3397
0.067
358
0.004
436
17.173
952
0.352
0.290
2.352
147
2606
2753
8
52.000
0.264
0.251
2.477
163
2612
2775
8
52.000
0.288
0.225
2.632
137
2627
2764
8
52.000
0.289
0.220
2.835
125
2677
2802
8
52.000
0.256
0.212
3.120
142
2614
2756
8
52.000
0.223
0.175
3.571
157
2657
2814
8
53.000
0.167
0.134
4.497
147
2686
2833
8
53.000
0.207
0.183
35.718
131
2813
2944
8
55.000
44.7
2.250
38.040
3I80
22453
22453
0
0
0.084
1.010
1
8.600
4.010
681
100.000
0.473
2.25
2.33
2.2
8938
2199
1.180
4.04
99.90
0.423
2.33
2.42
2.5
9013
2219
1.150
4.04
100.00
0.399
2.42
2.53
2.6
8998
2215
1.170
4.04
100.00
0.343
2.53
2.67
3.0
9042
2222
1.140
4.04
100.00
0.282
2.67
2.83
3.6
9053
2239
1.130
4.01
99.90
0.205
2.83
3.05
4.7
8923
2217
1.060
4.00
100.00
0.130
3.05
3.36
7.0
9002
2233
0.990
3.99
100.00
0.068
3.36
3.85
12.6
9091
2253
0.850
4.00
99.90
0.037
3.85
4.84
21.8
9238
2277
0.700
4.02
100.00
0.031
4.84
38.04
24.5
9378
2379
0.710
3.90
99.80
data scaling
Jim W. Pflugrath
Jim.Pflugrath@Rigaku.com
Jan 10 2006
http://www.rigaku.com/software/dtrek.html
d*TREK
package
9.4SSI
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Mon Sep 12 12:41:11 2005
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
1.3.3
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.005
data collection
CrystalClear
data reduction
d*TREK
Protein Tyrosine Phosphatase 1B - Transition state analog for the second catalytic step
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
5
N
N
A
GLU
2
A
GLU
2
HELX_P
A
GLY
14
A
GLY
14
1
1
13
A
SER
15
A
SER
15
HELX_P
A
ALA
27
A
ALA
27
1
2
13
A
LEU
37
A
LEU
37
HELX_P
A
ASN
44
A
ASN
44
5
3
8
A
THR
91
A
THR
91
HELX_P
A
GLN
102
A
GLN
102
1
4
12
A
SER
187
A
SER
187
HELX_P
A
SER
201
A
SER
201
1
5
15
A
GLY
220
A
GLY
220
HELX_P
A
LYS
239
A
LYS
239
1
6
20
A
ASP
240
A
ASP
240
HELX_P
A
VAL
244
A
VAL
244
5
7
5
A
ASP
245
A
ASP
245
HELX_P
A
ARG
254
A
ARG
254
1
8
10
A
THR
263
A
THR
263
HELX_P
A
MET
282
A
MET
282
1
9
20
A
SER
286
A
SER
286
HELX_P
A
HIS
296
A
HIS
296
1
10
11
HYDROLASE
Hydrolase, P-loop, WPD-loop, Protein Phosphatase, Vanadate, Acetylation, Endoplasmic reticulum, Membrane, Oxidation, Phosphoprotein, Polymorphism
PTN1_HUMAN
UNP
1
1
P18031
MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDNDYINASLIKMEEAQRS
YILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLEL
ENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD
PSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHEDLEPPPEHIPPPPRPPKRILEPH
N
1
321
3I80
1
321
P18031
A
1
1
321
8
2
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
69
A
ALA
69
A
MET
74
A
MET
74
A
ARG
79
A
ARG
79
A
THR
84
A
THR
84
A
VAL
211
A
VAL
211
A
HIS
214
A
HIS
214
A
GLY
106
A
GLY
106
A
MET
109
A
MET
109
A
THR
168
A
THR
168
A
TYR
176
A
TYR
176
A
TYR
153
A
TYR
153
A
ASN
162
A
ASN
162
A
LEU
140
A
LEU
140
A
ILE
149
A
ILE
149
A
MET
133
A
MET
133
A
PHE
135
A
PHE
135
A
MET
114
A
MET
114
A
GLU
115
A
GLU
115
A
SER
118
A
SER
118
A
LEU
119
A
LEU
119
BINDING SITE FOR RESIDUE VO4 A 322
A
VO4
322
Software
12
BINDING SITE FOR RESIDUE TRS A 323
A
TRS
323
Software
5
BINDING SITE FOR RESIDUE GOL A 324
A
GOL
324
Software
3
BINDING SITE FOR RESIDUE GOL A 325
A
GOL
325
Software
6
BINDING SITE FOR RESIDUE GOL A 326
A
GOL
326
Software
8
A
ASP
181
A
ASP
181
12
1_555
A
CYS
215
A
CYS
215
12
1_555
A
SER
216
A
SER
216
12
1_555
A
ALA
217
A
ALA
217
12
1_555
A
GLY
218
A
GLY
218
12
1_555
A
ILE
219
A
ILE
219
12
1_555
A
GLY
220
A
GLY
220
12
1_555
A
ARG
221
A
ARG
221
12
1_555
A
GLN
262
A
GLN
262
12
1_555
A
GOL
326
F
GOL
12
1_555
A
HOH
490
G
HOH
12
1_555
A
HOH
497
G
HOH
12
1_555
A
HIS
54
A
HIS
54
5
1_555
A
LYS
128
A
LYS
128
5
5_444
A
GLU
129
A
GLU
129
5
5_444
A
GLU
130
A
GLU
130
5
5_444
A
HOH
414
G
HOH
5
5_444
A
PRO
89
A
PRO
89
3
1_555
A
HOH
510
G
HOH
3
1_555
A
HOH
526
G
HOH
3
1_555
A
SER
146
A
SER
146
6
1_555
A
GLU
147
A
GLU
147
6
1_555
A
ASP
148
A
ASP
148
6
1_555
A
VAL
155
A
VAL
155
6
1_555
A
GLN
157
A
GLN
157
6
1_555
A
HOH
491
G
HOH
6
1_555
A
TYR
46
A
TYR
46
8
1_555
A
ASP
48
A
ASP
48
8
1_555
A
PHE
182
A
PHE
182
8
1_555
A
ALA
217
A
ALA
217
8
1_555
A
GLN
262
A
GLN
262
8
1_555
A
SER
285
A
SER
285
8
2_545
A
VO4
322
B
VO4
8
1_555
A
HOH
497
G
HOH
8
1_555
152
P 31 2 1