0.016743 0.000000 0.000000 0.000000 0.016743 0.000000 0.000000 0.000000 0.003902 0.00000 0.00000 0.00000 Fan, Y. Sather, A. Keigher, L. Joachimiak, A. Midwest Center for Structural Genomics (MCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 59.725 59.725 256.266 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C7 H17 N O3 163.215 TRIS(HYDROXYETHYL)AMINOMETHANE non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 The crystal structure of the beta subunit of a phenylalanyl-tRNA synthetase from Porphyromonas gingivalis W83 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 Mirror CCD 2009-06-05 ADSC QUANTUM 315r Si 111 crystal SINGLE WAVELENGTH M x-ray 1 0.97940 1.0 19-ID APS 0.97940 SYNCHROTRON APS BEAMLINE 19-ID 24534.096 Phenylalanyl-tRNA synthetase beta chain 6.1.1.20 sequence database residues 503-712 2 man polymer 92.094 GLYCEROL 11 syn non-polymer 163.215 TRIS(HYDROXYETHYL)AMINOMETHANE 1 syn non-polymer 18.015 water 161 nat water Phenylalanine-tRNA ligase beta chain, PheRS no yes SNADRRYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPRE(MSE)AVEL(MSE)NPLSQELNC(MSE)RQTLLFG GLETLSHNLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVL CRVGIETGAYTLKTADNDLYASA(MSE)EVKTRSGKLLGTFGTVSTELIKRFEIEQPVYFAELLWDAL(MSE) SNADRRYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRK HLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAYTL KTADNDLYASAMEVKTRSGKLLGTFGTVSTELIKRFEIEQPVYFAELLWDALM A,B APC61692.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n W83 sample PG_0099, pheT, Porphyromonas gingivalis 837 Porphyromonas gingivalis 562 Escherichia coli pPK1037 plasmid pMCSG19 1 2.33 47.18 VAPOR DIFFUSION, SITTING DROP 8.5 0.2M MgCl2, 0.1M Tris pH8.5, 30% v/v PEG400, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Midwest Center for Structural Genomics MCSG PSI, Protein Structure Initiative software repository Initial release Non-polymer description Version format compliance Refinement description 1 0 2009-07-28 1 1 2011-07-13 1 2 2017-11-01 _software.name Y RCSB Y RCSB 2009-07-17 REL REL GOL GLYCEROL TAM TRIS(HYDROXYETHYL)AMINOMETHANE HOH water GOL 2 2 GOL GOL 211 A GOL 3 2 GOL GOL 212 A GOL 4 2 GOL GOL 213 A GOL 5 2 GOL GOL 214 A GOL 8 2 GOL GOL 215 A GOL 9 2 GOL GOL 216 A GOL 10 2 GOL GOL 217 A TAM 1 3 TAM TAM 211 B GOL 1 2 GOL GOL 212 B GOL 6 2 GOL GOL 213 B GOL 7 2 GOL GOL 214 B GOL 11 2 GOL GOL 215 B HOH 218 4 HOH HOH 218 A HOH 1 4 HOH HOH 219 A HOH 7 4 HOH HOH 220 A HOH 8 4 HOH HOH 221 A HOH 9 4 HOH HOH 222 A HOH 19 4 HOH HOH 223 A HOH 20 4 HOH HOH 224 A HOH 21 4 HOH HOH 225 A HOH 22 4 HOH HOH 226 A HOH 26 4 HOH HOH 227 A HOH 28 4 HOH HOH 228 A HOH 29 4 HOH HOH 229 A HOH 32 4 HOH HOH 230 A HOH 34 4 HOH HOH 231 A HOH 36 4 HOH HOH 232 A HOH 39 4 HOH HOH 233 A HOH 41 4 HOH HOH 234 A HOH 42 4 HOH HOH 235 A HOH 43 4 HOH HOH 236 A HOH 46 4 HOH HOH 237 A HOH 47 4 HOH HOH 238 A HOH 48 4 HOH HOH 239 A HOH 51 4 HOH HOH 240 A HOH 54 4 HOH HOH 241 A HOH 56 4 HOH HOH 242 A HOH 57 4 HOH HOH 243 A HOH 63 4 HOH HOH 244 A HOH 66 4 HOH HOH 245 A HOH 67 4 HOH HOH 246 A HOH 72 4 HOH HOH 247 A HOH 75 4 HOH HOH 248 A HOH 82 4 HOH HOH 249 A HOH 83 4 HOH HOH 250 A HOH 84 4 HOH HOH 251 A HOH 86 4 HOH HOH 252 A HOH 89 4 HOH HOH 253 A HOH 93 4 HOH HOH 254 A HOH 94 4 HOH HOH 255 A HOH 95 4 HOH HOH 256 A HOH 100 4 HOH HOH 257 A HOH 102 4 HOH HOH 258 A HOH 106 4 HOH HOH 259 A HOH 107 4 HOH HOH 260 A HOH 111 4 HOH HOH 261 A HOH 114 4 HOH HOH 262 A HOH 117 4 HOH HOH 263 A HOH 118 4 HOH HOH 264 A HOH 119 4 HOH HOH 265 A HOH 125 4 HOH HOH 266 A HOH 130 4 HOH HOH 267 A HOH 135 4 HOH HOH 268 A HOH 141 4 HOH HOH 269 A HOH 142 4 HOH HOH 270 A HOH 150 4 HOH HOH 271 A HOH 154 4 HOH HOH 272 A HOH 159 4 HOH HOH 273 A HOH 160 4 HOH HOH 274 A HOH 161 4 HOH HOH 275 A HOH 173 4 HOH HOH 276 A HOH 174 4 HOH HOH 277 A HOH 176 4 HOH HOH 278 A HOH 182 4 HOH HOH 279 A HOH 183 4 HOH HOH 280 A HOH 187 4 HOH HOH 281 A HOH 189 4 HOH HOH 282 A HOH 194 4 HOH HOH 283 A HOH 196 4 HOH HOH 284 A HOH 201 4 HOH HOH 285 A HOH 206 4 HOH HOH 286 A HOH 208 4 HOH HOH 287 A HOH 209 4 HOH HOH 288 A HOH 211 4 HOH HOH 289 A HOH 213 4 HOH HOH 290 A HOH 214 4 HOH HOH 291 A HOH 215 4 HOH HOH 292 A HOH 216 4 HOH HOH 293 A HOH 3 4 HOH HOH 216 B HOH 217 4 HOH HOH 217 B HOH 10 4 HOH HOH 218 B HOH 219 4 HOH HOH 219 B HOH 11 4 HOH HOH 220 B HOH 13 4 HOH HOH 221 B HOH 14 4 HOH HOH 222 B HOH 15 4 HOH HOH 223 B HOH 18 4 HOH HOH 224 B HOH 25 4 HOH HOH 225 B HOH 27 4 HOH HOH 226 B HOH 30 4 HOH HOH 227 B HOH 31 4 HOH HOH 228 B HOH 33 4 HOH HOH 229 B HOH 35 4 HOH HOH 230 B HOH 37 4 HOH HOH 231 B HOH 38 4 HOH HOH 232 B HOH 40 4 HOH HOH 233 B HOH 44 4 HOH HOH 234 B HOH 45 4 HOH HOH 235 B HOH 49 4 HOH HOH 236 B HOH 50 4 HOH HOH 237 B HOH 53 4 HOH HOH 238 B HOH 55 4 HOH HOH 239 B HOH 58 4 HOH HOH 240 B HOH 61 4 HOH HOH 241 B HOH 62 4 HOH HOH 242 B HOH 64 4 HOH HOH 243 B HOH 65 4 HOH HOH 244 B HOH 68 4 HOH HOH 245 B HOH 70 4 HOH HOH 246 B HOH 71 4 HOH HOH 247 B HOH 74 4 HOH HOH 248 B HOH 77 4 HOH HOH 249 B HOH 79 4 HOH HOH 250 B HOH 80 4 HOH HOH 251 B HOH 81 4 HOH HOH 252 B HOH 88 4 HOH HOH 253 B HOH 90 4 HOH HOH 254 B HOH 91 4 HOH HOH 255 B HOH 92 4 HOH HOH 256 B HOH 97 4 HOH HOH 257 B HOH 105 4 HOH HOH 258 B HOH 108 4 HOH HOH 259 B HOH 109 4 HOH HOH 260 B HOH 112 4 HOH HOH 261 B HOH 116 4 HOH HOH 262 B HOH 121 4 HOH HOH 263 B HOH 122 4 HOH HOH 264 B HOH 124 4 HOH HOH 265 B HOH 128 4 HOH HOH 266 B HOH 129 4 HOH HOH 267 B HOH 131 4 HOH HOH 268 B HOH 133 4 HOH HOH 269 B HOH 136 4 HOH HOH 270 B HOH 138 4 HOH HOH 271 B HOH 139 4 HOH HOH 272 B HOH 143 4 HOH HOH 273 B HOH 144 4 HOH HOH 274 B HOH 145 4 HOH HOH 275 B HOH 146 4 HOH HOH 276 B HOH 149 4 HOH HOH 277 B HOH 155 4 HOH HOH 278 B HOH 162 4 HOH HOH 279 B HOH 164 4 HOH HOH 280 B HOH 165 4 HOH HOH 281 B HOH 169 4 HOH HOH 282 B HOH 170 4 HOH HOH 283 B HOH 172 4 HOH HOH 284 B HOH 175 4 HOH HOH 285 B HOH 178 4 HOH HOH 286 B HOH 180 4 HOH HOH 287 B HOH 181 4 HOH HOH 288 B HOH 184 4 HOH HOH 289 B HOH 185 4 HOH HOH 290 B HOH 188 4 HOH HOH 291 B HOH 193 4 HOH HOH 292 B HOH 199 4 HOH HOH 293 B HOH 202 4 HOH HOH 294 B HOH 203 4 HOH HOH 295 B HOH 204 4 HOH HOH 296 B HOH 205 4 HOH HOH 297 B HOH 207 4 HOH HOH 298 B HOH 210 4 HOH HOH 299 B HOH 212 4 HOH HOH 300 B n 1 -2 A ASN -1 n 2 ASN -1 A ALA 0 n 3 ALA 0 A ASP 1 n 4 ASP 1 A ARG 2 n 5 ARG 2 A ARG 3 n 6 ARG 3 A TYR 4 n 7 TYR 4 A LYS 5 n 8 LYS 5 A TRP 6 n 9 TRP 6 A GLN 7 n 10 GLN 7 A THR 8 n 11 THR 8 A VAL 9 n 12 VAL 9 A VAL 10 n 13 VAL 10 A SER 11 n 14 SER 11 A GLU 12 n 15 GLU 12 A GLN 13 n 16 GLN 13 A LEU 14 n 17 LEU 14 A VAL 15 n 18 VAL 15 A GLY 16 n 19 GLY 16 A ALA 17 n 20 ALA 17 A GLY 18 n 21 GLY 18 A PHE 19 n 22 PHE 19 A ASN 20 n 23 ASN 20 A GLU 21 n 24 GLU 21 A ILE 22 n 25 ILE 22 A LEU 23 n 26 LEU 23 A ASN 24 n 27 ASN 24 A ASN 25 n 28 ASN 25 A SER 26 n 29 SER 26 A LEU 27 n 30 LEU 27 A THR 28 n 31 THR 28 A ALA 29 n 32 ALA 29 A GLY 30 n 33 GLY 30 A SER 31 n 34 SER 31 A TYR 32 n 35 TYR 32 A TYR 33 n 36 TYR 33 A GLU 34 n 37 GLU 34 A GLY 35 n 38 GLY 35 A LEU 36 n 39 LEU 36 A LYS 37 n 40 LYS 37 A SER 38 n 41 SER 38 A HIS 39 n 42 HIS 39 A PRO 40 n 43 PRO 40 A ARG 41 n 44 ARG 41 A GLU 42 n 45 GLU 42 A MSE 43 n 46 MSE 43 A ALA 44 n 47 ALA 44 A VAL 45 n 48 VAL 45 A GLU 46 n 49 GLU 46 A LEU 47 n 50 LEU 47 A MSE 48 n 51 MSE 48 A ASN 49 n 52 ASN 49 A PRO 50 n 53 PRO 50 A LEU 51 n 54 LEU 51 A SER 52 n 55 SER 52 A GLN 53 n 56 GLN 53 A GLU 54 n 57 GLU 54 A LEU 55 n 58 LEU 55 A ASN 56 n 59 ASN 56 A CYS 57 n 60 CYS 57 A MSE 58 n 61 MSE 58 A ARG 59 n 62 ARG 59 A GLN 60 n 63 GLN 60 A THR 61 n 64 THR 61 A LEU 62 n 65 LEU 62 A LEU 63 n 66 LEU 63 A PHE 64 n 67 PHE 64 A GLY 65 n 68 GLY 65 A GLY 66 n 69 GLY 66 A LEU 67 n 70 LEU 67 A GLU 68 n 71 GLU 68 A THR 69 n 72 THR 69 A LEU 70 n 73 LEU 70 A SER 71 n 74 SER 71 A HIS 72 n 75 HIS 72 A ASN 73 n 76 ASN 73 A LEU 74 n 77 LEU 74 A ARG 75 n 78 ARG 75 A ARG 76 n 79 ARG 76 A LYS 77 n 80 LYS 77 A HIS 78 n 81 HIS 78 A LEU 79 n 82 LEU 79 A SER 80 n 83 SER 80 A LEU 81 n 84 LEU 81 A TYR 82 n 85 TYR 82 A LEU 83 n 86 LEU 83 A PHE 84 n 87 PHE 84 A GLU 85 n 88 GLU 85 A TRP 86 n 89 TRP 86 A GLY 87 n 90 GLY 87 A LYS 88 n 91 LYS 88 A CYS 89 n 92 CYS 89 A TYR 90 n 93 TYR 90 A ARG 91 n 94 ARG 91 A PHE 92 n 95 PHE 92 A HIS 93 n 96 HIS 93 A ALA 94 n 97 ALA 94 A ALA 95 n 98 ALA 95 A LYS 96 n 99 LYS 96 A ARG 97 n 100 ARG 97 A n 101 98 A n 102 99 A GLU 100 n 103 GLU 100 A THR 101 n 104 THR 101 A PRO 102 n 105 PRO 102 A LEU 103 n 106 LEU 103 A ALA 104 n 107 ALA 104 A ALA 105 n 108 ALA 105 A TYR 106 n 109 TYR 106 A ALA 107 n 110 ALA 107 A GLU 108 n 111 GLU 108 A ASP 109 n 112 ASP 109 A ASP 110 n 113 ASP 110 A ARG 111 n 114 ARG 111 A LEU 112 n 115 LEU 112 A GLY 113 n 116 GLY 113 A ILE 114 n 117 ILE 114 A TRP 115 n 118 TRP 115 A ILE 116 n 119 ILE 116 A CYS 117 n 120 CYS 117 A GLY 118 n 121 GLY 118 A GLN 119 n 122 GLN 119 A ARG 120 n 123 ARG 120 A VAL 121 n 124 VAL 121 A HIS 122 n 125 HIS 122 A n 126 123 A n 127 124 A n 128 125 A n 129 126 A n 130 127 A PRO 128 n 131 PRO 128 A GLU 129 n 132 GLU 129 A GLU 130 n 133 GLU 130 A PRO 131 n 134 PRO 131 A THR 132 n 135 THR 132 A SER 133 n 136 SER 133 A VAL 134 n 137 VAL 134 A PHE 135 n 138 PHE 135 A GLU 136 n 139 GLU 136 A LEU 137 n 140 LEU 137 A LYS 138 n 141 LYS 138 A ALA 139 n 142 ALA 139 A VAL 140 n 143 VAL 140 A VAL 141 n 144 VAL 141 A GLU 142 n 145 GLU 142 A GLN 143 n 146 GLN 143 A VAL 144 n 147 VAL 144 A LEU 145 n 148 LEU 145 A CYS 146 n 149 CYS 146 A ARG 147 n 150 ARG 147 A VAL 148 n 151 VAL 148 A GLY 149 n 152 GLY 149 A ILE 150 n 153 ILE 150 A GLU 151 n 154 GLU 151 A THR 152 n 155 THR 152 A GLY 153 n 156 GLY 153 A ALA 154 n 157 ALA 154 A TYR 155 n 158 TYR 155 A THR 156 n 159 THR 156 A LEU 157 n 160 LEU 157 A LYS 158 n 161 LYS 158 A THR 159 n 162 THR 159 A ALA 160 n 163 ALA 160 A ASP 161 n 164 ASP 161 A ASN 162 n 165 ASN 162 A ASP 163 n 166 ASP 163 A LEU 164 n 167 LEU 164 A TYR 165 n 168 TYR 165 A ALA 166 n 169 ALA 166 A SER 167 n 170 SER 167 A ALA 168 n 171 ALA 168 A MSE 169 n 172 MSE 169 A GLU 170 n 173 GLU 170 A VAL 171 n 174 VAL 171 A LYS 172 n 175 LYS 172 A THR 173 n 176 THR 173 A ARG 174 n 177 ARG 174 A SER 175 n 178 SER 175 A GLY 176 n 179 GLY 176 A LYS 177 n 180 LYS 177 A LEU 178 n 181 LEU 178 A LEU 179 n 182 LEU 179 A GLY 180 n 183 GLY 180 A THR 181 n 184 THR 181 A PHE 182 n 185 PHE 182 A GLY 183 n 186 GLY 183 A THR 184 n 187 THR 184 A VAL 185 n 188 VAL 185 A SER 186 n 189 SER 186 A THR 187 n 190 THR 187 A GLU 188 n 191 GLU 188 A LEU 189 n 192 LEU 189 A ILE 190 n 193 ILE 190 A LYS 191 n 194 LYS 191 A ARG 192 n 195 ARG 192 A PHE 193 n 196 PHE 193 A GLU 194 n 197 GLU 194 A ILE 195 n 198 ILE 195 A GLU 196 n 199 GLU 196 A GLN 197 n 200 GLN 197 A PRO 198 n 201 PRO 198 A VAL 199 n 202 VAL 199 A TYR 200 n 203 TYR 200 A PHE 201 n 204 PHE 201 A ALA 202 n 205 ALA 202 A GLU 203 n 206 GLU 203 A LEU 204 n 207 LEU 204 A LEU 205 n 208 LEU 205 A TRP 206 n 209 TRP 206 A ASP 207 n 210 ASP 207 A ALA 208 n 211 ALA 208 A LEU 209 n 212 LEU 209 A MSE 210 n 213 MSE 210 A n 1 -2 B ASN -1 n 2 ASN -1 B ALA 0 n 3 ALA 0 B ASP 1 n 4 ASP 1 B ARG 2 n 5 ARG 2 B ARG 3 n 6 ARG 3 B TYR 4 n 7 TYR 4 B LYS 5 n 8 LYS 5 B TRP 6 n 9 TRP 6 B GLN 7 n 10 GLN 7 B THR 8 n 11 THR 8 B VAL 9 n 12 VAL 9 B VAL 10 n 13 VAL 10 B SER 11 n 14 SER 11 B GLU 12 n 15 GLU 12 B GLN 13 n 16 GLN 13 B LEU 14 n 17 LEU 14 B VAL 15 n 18 VAL 15 B GLY 16 n 19 GLY 16 B ALA 17 n 20 ALA 17 B GLY 18 n 21 GLY 18 B PHE 19 n 22 PHE 19 B ASN 20 n 23 ASN 20 B GLU 21 n 24 GLU 21 B ILE 22 n 25 ILE 22 B LEU 23 n 26 LEU 23 B ASN 24 n 27 ASN 24 B ASN 25 n 28 ASN 25 B SER 26 n 29 SER 26 B LEU 27 n 30 LEU 27 B THR 28 n 31 THR 28 B ALA 29 n 32 ALA 29 B GLY 30 n 33 GLY 30 B SER 31 n 34 SER 31 B TYR 32 n 35 TYR 32 B TYR 33 n 36 TYR 33 B GLU 34 n 37 GLU 34 B GLY 35 n 38 GLY 35 B LEU 36 n 39 LEU 36 B LYS 37 n 40 LYS 37 B SER 38 n 41 SER 38 B HIS 39 n 42 HIS 39 B PRO 40 n 43 PRO 40 B ARG 41 n 44 ARG 41 B GLU 42 n 45 GLU 42 B MSE 43 n 46 MSE 43 B ALA 44 n 47 ALA 44 B VAL 45 n 48 VAL 45 B GLU 46 n 49 GLU 46 B LEU 47 n 50 LEU 47 B MSE 48 n 51 MSE 48 B ASN 49 n 52 ASN 49 B PRO 50 n 53 PRO 50 B LEU 51 n 54 LEU 51 B SER 52 n 55 SER 52 B GLN 53 n 56 GLN 53 B GLU 54 n 57 GLU 54 B LEU 55 n 58 LEU 55 B ASN 56 n 59 ASN 56 B CYS 57 n 60 CYS 57 B MSE 58 n 61 MSE 58 B ARG 59 n 62 ARG 59 B GLN 60 n 63 GLN 60 B THR 61 n 64 THR 61 B LEU 62 n 65 LEU 62 B LEU 63 n 66 LEU 63 B PHE 64 n 67 PHE 64 B GLY 65 n 68 GLY 65 B GLY 66 n 69 GLY 66 B LEU 67 n 70 LEU 67 B GLU 68 n 71 GLU 68 B THR 69 n 72 THR 69 B LEU 70 n 73 LEU 70 B SER 71 n 74 SER 71 B HIS 72 n 75 HIS 72 B ASN 73 n 76 ASN 73 B LEU 74 n 77 LEU 74 B ARG 75 n 78 ARG 75 B ARG 76 n 79 ARG 76 B LYS 77 n 80 LYS 77 B HIS 78 n 81 HIS 78 B LEU 79 n 82 LEU 79 B SER 80 n 83 SER 80 B LEU 81 n 84 LEU 81 B TYR 82 n 85 TYR 82 B LEU 83 n 86 LEU 83 B PHE 84 n 87 PHE 84 B GLU 85 n 88 GLU 85 B TRP 86 n 89 TRP 86 B GLY 87 n 90 GLY 87 B LYS 88 n 91 LYS 88 B CYS 89 n 92 CYS 89 B TYR 90 n 93 TYR 90 B ARG 91 n 94 ARG 91 B PHE 92 n 95 PHE 92 B HIS 93 n 96 HIS 93 B ALA 94 n 97 ALA 94 B ALA 95 n 98 ALA 95 B LYS 96 n 99 LYS 96 B ARG 97 n 100 ARG 97 B THR 98 n 101 THR 98 B ASP 99 n 102 ASP 99 B GLU 100 n 103 GLU 100 B THR 101 n 104 THR 101 B PRO 102 n 105 PRO 102 B LEU 103 n 106 LEU 103 B ALA 104 n 107 ALA 104 B ALA 105 n 108 ALA 105 B TYR 106 n 109 TYR 106 B ALA 107 n 110 ALA 107 B GLU 108 n 111 GLU 108 B ASP 109 n 112 ASP 109 B ASP 110 n 113 ASP 110 B ARG 111 n 114 ARG 111 B LEU 112 n 115 LEU 112 B GLY 113 n 116 GLY 113 B ILE 114 n 117 ILE 114 B TRP 115 n 118 TRP 115 B ILE 116 n 119 ILE 116 B CYS 117 n 120 CYS 117 B GLY 118 n 121 GLY 118 B GLN 119 n 122 GLN 119 B ARG 120 n 123 ARG 120 B VAL 121 n 124 VAL 121 B HIS 122 n 125 HIS 122 B n 126 123 B n 127 124 B n 128 125 B n 129 126 B n 130 127 B PRO 128 n 131 PRO 128 B GLU 129 n 132 GLU 129 B GLU 130 n 133 GLU 130 B PRO 131 n 134 PRO 131 B THR 132 n 135 THR 132 B SER 133 n 136 SER 133 B VAL 134 n 137 VAL 134 B PHE 135 n 138 PHE 135 B GLU 136 n 139 GLU 136 B LEU 137 n 140 LEU 137 B LYS 138 n 141 LYS 138 B ALA 139 n 142 ALA 139 B VAL 140 n 143 VAL 140 B VAL 141 n 144 VAL 141 B GLU 142 n 145 GLU 142 B GLN 143 n 146 GLN 143 B VAL 144 n 147 VAL 144 B LEU 145 n 148 LEU 145 B CYS 146 n 149 CYS 146 B ARG 147 n 150 ARG 147 B VAL 148 n 151 VAL 148 B GLY 149 n 152 GLY 149 B ILE 150 n 153 ILE 150 B GLU 151 n 154 GLU 151 B THR 152 n 155 THR 152 B GLY 153 n 156 GLY 153 B ALA 154 n 157 ALA 154 B TYR 155 n 158 TYR 155 B THR 156 n 159 THR 156 B LEU 157 n 160 LEU 157 B LYS 158 n 161 LYS 158 B THR 159 n 162 THR 159 B ALA 160 n 163 ALA 160 B ASP 161 n 164 ASP 161 B ASN 162 n 165 ASN 162 B ASP 163 n 166 ASP 163 B LEU 164 n 167 LEU 164 B TYR 165 n 168 TYR 165 B ALA 166 n 169 ALA 166 B SER 167 n 170 SER 167 B ALA 168 n 171 ALA 168 B MSE 169 n 172 MSE 169 B GLU 170 n 173 GLU 170 B VAL 171 n 174 VAL 171 B LYS 172 n 175 LYS 172 B THR 173 n 176 THR 173 B ARG 174 n 177 ARG 174 B SER 175 n 178 SER 175 B GLY 176 n 179 GLY 176 B LYS 177 n 180 LYS 177 B LEU 178 n 181 LEU 178 B LEU 179 n 182 LEU 179 B GLY 180 n 183 GLY 180 B THR 181 n 184 THR 181 B PHE 182 n 185 PHE 182 B GLY 183 n 186 GLY 183 B THR 184 n 187 THR 184 B VAL 185 n 188 VAL 185 B SER 186 n 189 SER 186 B THR 187 n 190 THR 187 B GLU 188 n 191 GLU 188 B LEU 189 n 192 LEU 189 B ILE 190 n 193 ILE 190 B LYS 191 n 194 LYS 191 B ARG 192 n 195 ARG 192 B PHE 193 n 196 PHE 193 B GLU 194 n 197 GLU 194 B ILE 195 n 198 ILE 195 B GLU 196 n 199 GLU 196 B GLN 197 n 200 GLN 197 B PRO 198 n 201 PRO 198 B VAL 199 n 202 VAL 199 B TYR 200 n 203 TYR 200 B PHE 201 n 204 PHE 201 B ALA 202 n 205 ALA 202 B GLU 203 n 206 GLU 203 B LEU 204 n 207 LEU 204 B LEU 205 n 208 LEU 205 B TRP 206 n 209 TRP 206 B ASP 207 n 210 ASP 207 B ALA 208 n 211 ALA 208 B LEU 209 n 212 LEU 209 B MSE 210 n 213 MSE 210 B author_and_software_defined_assembly PISA 2 dimeric 6460 -21 19410 A MSE 43 SELENOMETHIONINE A MSE 46 MET A MSE 48 SELENOMETHIONINE A MSE 51 MET A MSE 58 SELENOMETHIONINE A MSE 61 MET A MSE 169 SELENOMETHIONINE A MSE 172 MET A MSE 210 SELENOMETHIONINE A MSE 213 MET B MSE 43 SELENOMETHIONINE B MSE 46 MET B MSE 48 SELENOMETHIONINE B MSE 51 MET B MSE 58 SELENOMETHIONINE B MSE 61 MET B MSE 169 SELENOMETHIONINE B MSE 172 MET B MSE 210 SELENOMETHIONINE B MSE 213 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ASN 20 A N ASN 23 A O TYR 82 A O TYR 85 A N LEU 83 A N LEU 86 A O TRP 115 A O TRP 118 A N LEU 112 A N LEU 115 A O LEU 204 A O LEU 207 A O GLU 203 A O GLU 206 A N THR 181 A N THR 184 A O GLY 180 A O GLY 183 A N VAL 171 A N VAL 174 A O GLU 170 A O GLU 173 A N LYS 158 A N LYS 161 A N THR 28 A N THR 31 A O CYS 57 A O CYS 60 B N ASN 20 B N ASN 23 B O TYR 82 B O TYR 85 B N ARG 91 B N ARG 94 B O ALA 107 B O ALA 110 B N LEU 112 B N LEU 115 B O LEU 204 B O LEU 207 B O VAL 199 B O VAL 202 B N VAL 185 B N VAL 188 B O LEU 179 B O LEU 182 B N VAL 171 B N VAL 174 B O GLU 170 B O GLU 173 B N LYS 158 B N LYS 161 B N THR 28 B N THR 31 B O CYS 57 B O CYS 60 1 A SER -2 A SER 1 1 Y 1 A THR 98 A THR 101 1 Y 1 A ASP 99 A ASP 102 1 Y 1 A ASN 123 A ASN 126 1 Y 1 A SER 124 A SER 127 1 Y 1 A TRP 125 A TRP 128 1 Y 1 A ALA 126 A ALA 129 1 Y 1 A HIS 127 A HIS 130 1 Y 1 B SER -2 B SER 1 1 Y 1 B ASN 123 B ASN 126 1 Y 1 B SER 124 B SER 127 1 Y 1 B TRP 125 B TRP 128 1 Y 1 B ALA 126 B ALA 129 1 Y 1 B HIS 127 B HIS 130 1 Y 1 -3.83 0.50 120.30 116.47 B B B NE CZ NH1 ARG ARG ARG 59 59 59 N 1 3.10 0.50 120.30 123.40 B B B NE CZ NH2 ARG ARG ARG 59 59 59 N 1 A ASN 56 -146.23 11.25 1 A ARG 75 -59.25 0.67 1 A SER 186 A -36.50 139.35 1 A GLN 197 -176.17 148.68 1 B GLU 100 -125.37 -108.22 1 B ALA 104 -97.23 -128.77 1 B GLU 130 -58.54 109.09 1 B GLU 196 -93.78 31.13 44.400 1.98 0.00 0.00 1.98 0.00 -3.97 0.947 0.923 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.25486 0.20248 0.20505 2.44 50.00 891 17329 4.9 99.81 8.568 0.197 RANDOM 1 THROUGHOUT SAD 0.559 0.289 0.80 0.80 1.20 MAXIMUM LIKELIHOOD WITH PHASES MASK 2.44 50.00 161 3542 77 0 3304 0.014 0.022 3505 1.460 1.972 4724 6.908 5.000 421 37.256 23.494 166 16.719 15.000 606 13.742 15.000 28 0.088 0.200 512 0.006 0.020 2608 0.869 1.500 2086 1.668 2.000 3350 2.246 3.000 1419 3.655 4.500 1374 0.354 0.258 2.505 58 1259 20 99.85 2.44 50.00 3ICA 18220 0.088 1 32.553 7.7 99.4 0.497 2.44 2.48 4.214 859 1 6.0 93.3 data collection SBC-Collect collect phasing SHELXD phasing MLPHARE model building ARP model building WARP phasing HKL-3000 refinement REFMAC 5.5.0054 data reduction HKL-3000 data scaling HKL-3000 Phenylalanyl-tRNA synthetase beta chain (E.C.6.1.1.20) The crystal structure of the beta subunit of a phenylalanyl-tRNA synthetase from Porphyromonas gingivalis W83 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 2 N N 2 N N 2 N N 2 N N 4 N N 4 N N A ASN -1 A ASN 2 HELX_P A ALA 17 A ALA 20 1 1 19 A SER 31 A SER 34 HELX_P A GLU 34 A GLU 37 5 2 4 A PRO 40 A PRO 43 HELX_P A ALA 44 A ALA 47 5 3 5 A LEU 62 A LEU 65 HELX_P A ARG 75 A ARG 78 1 4 14 A SER 133 A SER 136 HELX_P A VAL 148 A VAL 151 1 5 16 A GLU 151 A GLU 154 HELX_P A GLY 153 A GLY 156 5 6 3 A SER 186 A SER 189 HELX_P A PHE 193 A PHE 196 1 7 8 A TRP 206 A TRP 209 HELX_P A MSE 210 A MSE 213 1 8 5 B ASN -1 B ASN 2 HELX_P B ALA 17 B ALA 20 1 9 19 B ALA 29 B ALA 32 HELX_P B GLU 34 B GLU 37 5 10 6 B PRO 40 B PRO 43 HELX_P B ALA 44 B ALA 47 5 11 5 B LEU 62 B LEU 65 HELX_P B ARG 76 B ARG 79 1 12 15 B SER 133 B SER 136 HELX_P B VAL 148 B VAL 151 1 13 16 B GLU 151 B GLU 154 HELX_P B GLY 153 B GLY 156 5 14 3 B SER 186 B SER 189 HELX_P B PHE 193 B PHE 196 1 15 8 B TRP 206 B TRP 209 HELX_P B MSE 210 B MSE 213 1 16 5 covale 1.331 A A GLU 42 A C GLU 45 1_555 A MSE 43 A N MSE 46 1_555 covale 1.329 B A GLU 42 A C GLU 45 1_555 A MSE 43 A N MSE 46 1_555 covale 1.329 A MSE 43 A C MSE 46 1_555 A ALA 44 A N ALA 47 1_555 covale 1.329 A LEU 47 A C LEU 50 1_555 A MSE 48 A N MSE 51 1_555 covale 1.331 A MSE 48 A C MSE 51 1_555 A ASN 49 A N ASN 52 1_555 covale 1.321 A CYS 57 A C CYS 60 1_555 A MSE 58 A N MSE 61 1_555 covale 1.334 A MSE 58 A C MSE 61 1_555 A ARG 59 A N ARG 62 1_555 covale 1.328 A ALA 168 A C ALA 171 1_555 A MSE 169 A N MSE 172 1_555 covale 1.331 A MSE 169 A C MSE 172 1_555 A GLU 170 A N GLU 173 1_555 covale 1.333 A LEU 209 A C LEU 212 1_555 A MSE 210 A N MSE 213 1_555 covale 1.327 B GLU 42 B C GLU 45 1_555 B MSE 43 B N MSE 46 1_555 covale 1.340 B MSE 43 B C MSE 46 1_555 B ALA 44 B N ALA 47 1_555 covale 1.322 B LEU 47 B C LEU 50 1_555 B MSE 48 B N MSE 51 1_555 covale 1.323 B MSE 48 B C MSE 51 1_555 B ASN 49 B N ASN 52 1_555 covale 1.322 B CYS 57 B C CYS 60 1_555 B MSE 58 B N MSE 61 1_555 covale 1.334 B MSE 58 B C MSE 61 1_555 B ARG 59 B N ARG 62 1_555 covale 1.324 B ALA 168 B C ALA 171 1_555 B MSE 169 B N MSE 172 1_555 covale 1.331 B MSE 169 B C MSE 172 1_555 B GLU 170 B N GLU 173 1_555 covale 1.333 B LEU 209 B C LEU 212 1_555 B MSE 210 B N MSE 213 1_555 LIGASE APC61692.1, Porphyromonas gingivalis, phenylalanyl-tRNA synthetase, beta subunit, Structural genomics, PSI-2, Protein structure initiative, Midwest Center for Structural Genomics, MCSG, Aminoacyl-tRNA synthetase, ATP-binding, Ligase, Magnesium, Metal-binding, Nucleotide-binding, Protein biosynthesis, RNA-binding, tRNA-binding SYFB_PORGI UNP 1 503 Q7MXR4 DRRYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLS LYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAYTLKTA DNDLYASAMEVKTRSGKLLGTFGTVSTELIKRFEIEQPVYFAELLWDALM 503 712 3ICA 1 210 Q7MXR4 A 1 4 213 503 712 3ICA 1 210 Q7MXR4 B 1 4 213 1 EXPRESSION TAG SER -2 3ICA A Q7MXR4 UNP 1 1 EXPRESSION TAG ASN -1 3ICA A Q7MXR4 UNP 2 1 EXPRESSION TAG ALA 0 3ICA A Q7MXR4 UNP 3 2 EXPRESSION TAG SER -2 3ICA B Q7MXR4 UNP 1 2 EXPRESSION TAG ASN -1 3ICA B Q7MXR4 UNP 2 2 EXPRESSION TAG ALA 0 3ICA B Q7MXR4 UNP 3 7 2 7 2 parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ASN 20 A ASN 23 A GLU 21 A GLU 24 A SER 80 A SER 83 A HIS 93 A HIS 96 A ALA 105 A ALA 108 A GLY 118 A GLY 121 A VAL 199 A VAL 202 A LEU 205 A LEU 208 A LEU 178 A LEU 181 A VAL 185 A VAL 188 A TYR 165 A TYR 168 A THR 173 A THR 176 A TYR 155 A TYR 158 A THR 159 A THR 162 A LEU 27 A LEU 30 A ALA 29 A ALA 32 A LEU 55 A LEU 58 A MSE 58 A MSE 61 B ASN 20 B ASN 23 B GLU 21 B GLU 24 B SER 80 B SER 83 B ALA 94 B ALA 97 B LEU 103 B LEU 106 B GLY 118 B GLY 121 B VAL 199 B VAL 202 B LEU 205 B LEU 208 B LEU 178 B LEU 181 B VAL 185 B VAL 188 B TYR 165 B TYR 168 B THR 173 B THR 176 B TYR 155 B TYR 158 B THR 159 B THR 162 B LEU 27 B LEU 30 B THR 28 B THR 31 B CYS 57 B CYS 60 B MSE 58 B MSE 61 BINDING SITE FOR RESIDUE GOL A 211 Software 6 BINDING SITE FOR RESIDUE GOL A 212 Software 4 BINDING SITE FOR RESIDUE GOL A 213 Software 7 BINDING SITE FOR RESIDUE GOL A 214 Software 4 BINDING SITE FOR RESIDUE GOL A 215 Software 7 BINDING SITE FOR RESIDUE GOL A 216 Software 4 BINDING SITE FOR RESIDUE GOL A 217 Software 5 BINDING SITE FOR RESIDUE TAM B 211 Software 8 BINDING SITE FOR RESIDUE GOL B 212 Software 5 BINDING SITE FOR RESIDUE GOL B 213 Software 10 BINDING SITE FOR RESIDUE GOL B 214 Software 8 BINDING SITE FOR RESIDUE GOL B 215 Software 5 A ASN 24 A ASN 27 6 1_555 A ASN 25 A ASN 28 6 1_555 A LEU 27 A LEU 30 6 1_555 A GLU 68 A GLU 71 6 1_555 A HOH 218 O HOH 6 1_555 A HOH 253 O HOH 6 1_555 B VAL 134 B VAL 137 4 4_555 B PHE 135 B PHE 138 4 4_555 B HOH 216 P HOH 4 4_555 B HOH 268 P HOH 4 4_555 A ARG 3 A ARG 6 7 1_555 A GLN 7 A GLN 10 7 1_555 A GLY 87 A GLY 90 7 1_555 A LYS 88 A LYS 91 7 1_555 A ASP 110 A ASP 113 7 1_555 A HOH 293 O HOH 7 1_555 B TYR 106 B TYR 109 7 1_555 A ILE 22 A ILE 25 4 1_555 A LEU 23 A LEU 26 4 1_555 A ASN 24 A ASN 27 4 1_555 A THR 69 A THR 72 4 1_555 A TYR 4 A TYR 7 7 1_555 A GLN 7 A GLN 10 7 1_555 A THR 8 A THR 11 7 1_555 A SER 11 A SER 14 7 1_555 A GLU 21 A GLU 24 7 1_555 A TRP 86 A TRP 89 7 1_555 A HOH 281 O HOH 7 1_555 A LYS 5 A LYS 8 4 1_555 A TRP 6 A TRP 9 4 1_555 A VAL 9 A VAL 12 4 1_555 A ARG 147 A ARG 150 4 1_555 A THR 173 A THR 176 5 1_555 A LYS 177 A LYS 180 5 1_555 A ALA 208 A ALA 211 5 1_555 A LEU 209 A LEU 212 5 1_555 A HOH 276 O HOH 5 1_555 A TYR 106 A TYR 109 8 1_555 A HOH 222 O HOH 8 1_555 B GLN 7 B GLN 10 8 1_555 B TRP 86 B TRP 89 8 1_555 B GLY 87 B GLY 90 8 1_555 B ASP 110 B ASP 113 8 1_555 B ARG 111 B ARG 114 8 1_555 B GOL 214 M GOL 8 1_555 B ASN 24 B ASN 27 5 1_555 B ASN 25 B ASN 28 5 1_555 B LEU 27 B LEU 30 5 1_555 B GLU 68 B GLU 71 5 1_555 B HOH 217 P HOH 5 1_555 B ASN 24 B ASN 27 10 1_555 B ASN 25 B ASN 28 10 1_555 B ARG 59 B ARG 62 10 1_555 B THR 61 B THR 64 10 1_555 B LEU 62 B LEU 65 10 1_555 B PHE 64 B PHE 67 10 1_555 B GLY 65 B GLY 68 10 1_555 B GLY 66 B GLY 69 10 1_555 B GLU 85 B GLU 88 10 1_555 B HOH 278 P HOH 10 1_555 A VAL 45 A VAL 48 8 1_555 A GLU 46 A GLU 49 8 1_555 A MSE 48 A MSE 51 8 1_555 B TYR 4 B TYR 7 8 1_555 B GLN 7 B GLN 10 8 1_555 B SER 11 B SER 14 8 1_555 B GLU 21 B GLU 24 8 1_555 B TAM 211 J TAM 8 1_555 A ARG 120 A ARG 123 5 3_544 A PHE 135 A PHE 138 5 3_544 A GLU 136 A GLU 139 5 3_544 B LEU 157 B LEU 160 5 1_555 B MSE 169 B MSE 172 5 1_555 96 P 43 21 2