0.017183
0.009921
0.000000
0.000000
0.019841
0.000000
0.000000
0.000000
0.002563
0.000000
0.000000
0.000000
Amzel, L.M.
Huang, C.H.
Gabelli, S.B.
Oldfield, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.000
90.000
120.000
58.197
58.197
390.223
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C7 H11 F N O7 P2 1
302.111
3-FLUORO-1-(2-HYDROXY-2,2-DIPHOSPHONOETHYL)PYRIDINIUM
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
MG
N
251
N
C
N
252
N
O
N
253
N
O
N
254
N
C
N
255
N
O
Y
256
N
C
N
257
N
P
N
258
N
P
N
259
N
O
N
260
N
O
N
261
N
O
N
262
N
O
Y
263
N
N
N
264
N
F
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
O
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
S
N
335
N
O
N
336
N
O
N
337
N
O
N
338
N
O
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
R
C
N
344
N
O
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
N
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
N
394
N
O
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
N
412
N
C
N
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
Y
249
N
doub
Y
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
Y
258
N
sing
N
259
N
sing
Y
260
N
doub
Y
261
N
sing
N
262
N
sing
Y
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
Y
277
N
doub
Y
278
N
sing
Y
279
N
sing
N
280
N
sing
Y
281
N
doub
N
282
N
sing
Y
283
N
doub
N
284
N
sing
Y
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
doub
Y
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
Y
378
N
doub
Y
379
N
sing
Y
380
N
sing
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
US
Proteins
PSFGEY
0867
0887-3585
78
888
899
10.1002/prot.22614
19876942
Binding of nitrogen-containing bisphosphonates (N-BPs) to the Trypanosoma cruzi farnesyl diphosphate synthase homodimer.
2010
10.2210/pdb3id0/pdb
pdb_00003id0
100
1
CCD
2008-07-15
MAR CCD 165 mm
SINGLE WAVELENGTH
M
x-ray
1
0.9729
1.0
31-ID
APS
0.9729
SYNCHROTRON
APS BEAMLINE 31-ID
41225.324
Farnesyl pyrophosphate synthase
2.5.1.10
1
man
polymer
302.111
3-FLUORO-1-(2-HYDROXY-2,2-DIPHOSPHONOETHYL)PYRIDINIUM
1
syn
non-polymer
24.305
MAGNESIUM ION
3
syn
non-polymer
96.063
SULFATE ION
2
syn
non-polymer
18.015
water
41
nat
water
no
no
MASMERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDA
CVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVD
YATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAH
LIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQAD
FAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK
MASMERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDA
CVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVD
YATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAH
LIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQAD
FAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
FPPS
5693
Trypanosoma cruzi
562
Escherichia coli
BL21(DE3)
plasmid
pET28
1
2.31
46.84
VAPOR DIFFUSION, HANGING DROP
4.6
PEG 4000, 200mM Ammonium Sulfate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2010-02-09
1
1
2011-07-13
1
2
2017-11-01
1
3
2024-02-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2009-07-19
REL
REL
NI9
3-FLUORO-1-(2-HYDROXY-2,2-DIPHOSPHONOETHYL)PYRIDINIUM
MG
MAGNESIUM ION
SO4
SULFATE ION
HOH
water
NI9
1
2
NI9
NI9
363
A
MG
401
3
MG
MG
401
A
MG
402
3
MG
MG
402
A
MG
403
3
MG
MG
403
A
SO4
405
4
SO4
SO4
405
A
SO4
406
4
SO4
SO4
406
A
HOH
1
5
HOH
HOH
364
A
HOH
3
5
HOH
HOH
365
A
HOH
260
5
HOH
HOH
366
A
HOH
1
5
HOH
HOH
367
A
HOH
2
5
HOH
HOH
368
A
HOH
3
5
HOH
HOH
369
A
HOH
4
5
HOH
HOH
370
A
HOH
5
5
HOH
HOH
371
A
HOH
6
5
HOH
HOH
372
A
HOH
7
5
HOH
HOH
373
A
HOH
8
5
HOH
HOH
374
A
HOH
9
5
HOH
HOH
375
A
HOH
10
5
HOH
HOH
376
A
HOH
11
5
HOH
HOH
377
A
HOH
12
5
HOH
HOH
378
A
HOH
13
5
HOH
HOH
379
A
HOH
14
5
HOH
HOH
380
A
HOH
15
5
HOH
HOH
381
A
HOH
16
5
HOH
HOH
382
A
HOH
17
5
HOH
HOH
383
A
HOH
18
5
HOH
HOH
384
A
HOH
19
5
HOH
HOH
385
A
HOH
20
5
HOH
HOH
386
A
HOH
21
5
HOH
HOH
387
A
HOH
22
5
HOH
HOH
388
A
HOH
23
5
HOH
HOH
389
A
HOH
24
5
HOH
HOH
390
A
HOH
25
5
HOH
HOH
391
A
HOH
26
5
HOH
HOH
392
A
HOH
27
5
HOH
HOH
393
A
HOH
28
5
HOH
HOH
394
A
HOH
29
5
HOH
HOH
395
A
HOH
30
5
HOH
HOH
396
A
HOH
31
5
HOH
HOH
397
A
HOH
32
5
HOH
HOH
398
A
HOH
33
5
HOH
HOH
399
A
HOH
34
5
HOH
HOH
400
A
HOH
35
5
HOH
HOH
404
A
HOH
36
5
HOH
HOH
407
A
HOH
37
5
HOH
HOH
408
A
HOH
38
5
HOH
HOH
409
A
MET
1
n
1
MET
1
A
ALA
2
n
2
ALA
2
A
SER
3
n
3
SER
3
A
MET
4
n
4
MET
4
A
GLU
5
n
5
GLU
5
A
ARG
6
n
6
ARG
6
A
PHE
7
n
7
PHE
7
A
LEU
8
n
8
LEU
8
A
SER
9
n
9
SER
9
A
VAL
10
n
10
VAL
10
A
TYR
11
n
11
TYR
11
A
ASP
12
n
12
ASP
12
A
GLU
13
n
13
GLU
13
A
VAL
14
n
14
VAL
14
A
GLN
15
n
15
GLN
15
A
ALA
16
n
16
ALA
16
A
PHE
17
n
17
PHE
17
A
LEU
18
n
18
LEU
18
A
LEU
19
n
19
LEU
19
A
ASP
20
n
20
ASP
20
A
GLN
21
n
21
GLN
21
A
LEU
22
n
22
LEU
22
A
GLN
23
n
23
GLN
23
A
SER
24
n
24
SER
24
A
LYS
25
n
25
LYS
25
A
TYR
26
n
26
TYR
26
A
GLU
27
n
27
GLU
27
A
ILE
28
n
28
ILE
28
A
ASP
29
n
29
ASP
29
A
PRO
30
n
30
PRO
30
A
ASN
31
n
31
ASN
31
A
ARG
32
n
32
ARG
32
A
ALA
33
n
33
ALA
33
A
ARG
34
n
34
ARG
34
A
TYR
35
n
35
TYR
35
A
LEU
36
n
36
LEU
36
A
ARG
37
n
37
ARG
37
A
ILE
38
n
38
ILE
38
A
MET
39
n
39
MET
39
A
MET
40
n
40
MET
40
A
ASP
41
n
41
ASP
41
A
THR
42
n
42
THR
42
A
THR
43
n
43
THR
43
A
CYS
44
n
44
CYS
44
A
LEU
45
n
45
LEU
45
A
GLY
46
n
46
GLY
46
A
GLY
47
n
47
GLY
47
A
LYS
48
n
48
LYS
48
A
TYR
49
n
49
TYR
49
A
PHE
50
n
50
PHE
50
A
ARG
51
n
51
ARG
51
A
GLY
52
n
52
GLY
52
A
MET
53
n
53
MET
53
A
THR
54
n
54
THR
54
A
VAL
55
n
55
VAL
55
A
VAL
56
n
56
VAL
56
A
ASN
57
n
57
ASN
57
A
VAL
58
n
58
VAL
58
A
ALA
59
n
59
ALA
59
A
GLU
60
n
60
GLU
60
A
GLY
61
n
61
GLY
61
A
PHE
62
n
62
PHE
62
A
LEU
63
n
63
LEU
63
A
ALA
64
n
64
ALA
64
A
VAL
65
n
65
VAL
65
A
THR
66
n
66
THR
66
A
GLN
67
n
67
GLN
67
A
HIS
68
n
68
HIS
68
A
ASP
69
n
69
ASP
69
A
GLU
70
n
70
GLU
70
A
ALA
71
n
71
ALA
71
A
THR
72
n
72
THR
72
A
LYS
73
n
73
LYS
73
A
GLU
74
n
74
GLU
74
A
ARG
75
n
75
ARG
75
A
ILE
76
n
76
ILE
76
A
LEU
77
n
77
LEU
77
A
HIS
78
n
78
HIS
78
A
ASP
79
n
79
ASP
79
A
ALA
80
n
80
ALA
80
A
CYS
81
n
81
CYS
81
A
VAL
82
n
82
VAL
82
A
GLY
83
n
83
GLY
83
A
GLY
84
n
84
GLY
84
A
TRP
85
n
85
TRP
85
A
MET
86
n
86
MET
86
A
ILE
87
n
87
ILE
87
A
GLU
88
n
88
GLU
88
A
PHE
89
n
89
PHE
89
A
LEU
90
n
90
LEU
90
A
GLN
91
n
91
GLN
91
A
ALA
92
n
92
ALA
92
A
HIS
93
n
93
HIS
93
A
TYR
94
n
94
TYR
94
A
LEU
95
n
95
LEU
95
A
VAL
96
n
96
VAL
96
A
GLU
97
n
97
GLU
97
A
ASP
98
n
98
ASP
98
A
ASP
99
n
99
ASP
99
A
ILE
100
n
100
ILE
100
A
MET
101
n
101
MET
101
A
ASP
102
n
102
ASP
102
A
GLY
103
n
103
GLY
103
A
SER
104
n
104
SER
104
A
VAL
105
n
105
VAL
105
A
MET
106
n
106
MET
106
A
ARG
107
n
107
ARG
107
A
ARG
108
n
108
ARG
108
A
GLY
109
n
109
GLY
109
A
LYS
110
n
110
LYS
110
A
PRO
111
n
111
PRO
111
A
CYS
112
n
112
CYS
112
A
TRP
113
n
113
TRP
113
A
TYR
114
n
114
TYR
114
A
ARG
115
n
115
ARG
115
A
PHE
116
n
116
PHE
116
A
PRO
117
n
117
PRO
117
A
GLY
118
n
118
GLY
118
A
VAL
119
n
119
VAL
119
A
THR
120
n
120
THR
120
A
THR
121
n
121
THR
121
A
GLN
122
n
122
GLN
122
A
CYS
123
n
123
CYS
123
A
ALA
124
n
124
ALA
124
A
ILE
125
n
125
ILE
125
A
ASN
126
n
126
ASN
126
A
ASP
127
n
127
ASP
127
A
GLY
128
n
128
GLY
128
A
ILE
129
n
129
ILE
129
A
ILE
130
n
130
ILE
130
A
LEU
131
n
131
LEU
131
A
LYS
132
n
132
LYS
132
A
SER
133
n
133
SER
133
A
TRP
134
n
134
TRP
134
A
THR
135
n
135
THR
135
A
GLN
136
n
136
GLN
136
A
ILE
137
n
137
ILE
137
A
MET
138
n
138
MET
138
A
ALA
139
n
139
ALA
139
A
TRP
140
n
140
TRP
140
A
HIS
141
n
141
HIS
141
A
TYR
142
n
142
TYR
142
A
PHE
143
n
143
PHE
143
A
ALA
144
n
144
ALA
144
A
ASP
145
n
145
ASP
145
A
ARG
146
n
146
ARG
146
A
PRO
147
n
147
PRO
147
A
PHE
148
n
148
PHE
148
A
LEU
149
n
149
LEU
149
A
LYS
150
n
150
LYS
150
A
ASP
151
n
151
ASP
151
A
LEU
152
n
152
LEU
152
A
LEU
153
n
153
LEU
153
A
CYS
154
n
154
CYS
154
A
LEU
155
n
155
LEU
155
A
PHE
156
n
156
PHE
156
A
GLN
157
n
157
GLN
157
A
LYS
158
n
158
LYS
158
A
VAL
159
n
159
VAL
159
A
ASP
160
n
160
ASP
160
A
TYR
161
n
161
TYR
161
A
ALA
162
n
162
ALA
162
A
THR
163
n
163
THR
163
A
ALA
164
n
164
ALA
164
A
VAL
165
n
165
VAL
165
A
GLY
166
n
166
GLY
166
A
GLN
167
n
167
GLN
167
A
MET
168
n
168
MET
168
A
TYR
169
n
169
TYR
169
A
ASP
170
n
170
ASP
170
A
VAL
171
n
171
VAL
171
A
THR
172
n
172
THR
172
A
SER
173
n
173
SER
173
A
MET
174
n
174
MET
174
A
CYS
175
n
175
CYS
175
A
ASP
176
n
176
ASP
176
A
SER
177
n
177
SER
177
A
ASN
178
n
178
ASN
178
A
LYS
179
n
179
LYS
179
A
LEU
180
n
180
LEU
180
A
ASP
181
n
181
ASP
181
A
PRO
182
n
182
PRO
182
A
GLU
183
n
183
GLU
183
A
VAL
184
n
184
VAL
184
A
ALA
185
n
185
ALA
185
A
GLN
186
n
186
GLN
186
A
PRO
187
n
187
PRO
187
A
MET
188
n
188
MET
188
A
THR
189
n
189
THR
189
A
THR
190
n
190
THR
190
A
ASP
191
n
191
ASP
191
A
PHE
192
n
192
PHE
192
A
ALA
193
n
193
ALA
193
A
GLU
194
n
194
GLU
194
A
PHE
195
n
195
PHE
195
A
THR
196
n
196
THR
196
A
PRO
197
n
197
PRO
197
A
ALA
198
n
198
ALA
198
A
ILE
199
n
199
ILE
199
A
TYR
200
n
200
TYR
200
A
LYS
201
n
201
LYS
201
A
ARG
202
n
202
ARG
202
A
ILE
203
n
203
ILE
203
A
VAL
204
n
204
VAL
204
A
LYS
205
n
205
LYS
205
A
TYR
206
n
206
TYR
206
A
LYS
207
n
207
LYS
207
A
THR
208
n
208
THR
208
A
THR
209
n
209
THR
209
A
PHE
210
n
210
PHE
210
A
TYR
211
n
211
TYR
211
A
THR
212
n
212
THR
212
A
TYR
213
n
213
TYR
213
A
LEU
214
n
214
LEU
214
A
LEU
215
n
215
LEU
215
A
PRO
216
n
216
PRO
216
A
LEU
217
n
217
LEU
217
A
VAL
218
n
218
VAL
218
A
MET
219
n
219
MET
219
A
GLY
220
n
220
GLY
220
A
LEU
221
n
221
LEU
221
A
PHE
222
n
222
PHE
222
A
VAL
223
n
223
VAL
223
A
SER
224
n
224
SER
224
A
GLU
225
n
225
GLU
225
A
ALA
226
n
226
ALA
226
A
ALA
227
n
227
ALA
227
A
ALA
228
n
228
ALA
228
A
SER
229
n
229
SER
229
A
VAL
230
n
230
VAL
230
A
GLU
231
n
231
GLU
231
A
MET
232
n
232
MET
232
A
ASN
233
n
233
ASN
233
A
LEU
234
n
234
LEU
234
A
VAL
235
n
235
VAL
235
A
GLU
236
n
236
GLU
236
A
ARG
237
n
237
ARG
237
A
VAL
238
n
238
VAL
238
A
ALA
239
n
239
ALA
239
A
HIS
240
n
240
HIS
240
A
LEU
241
n
241
LEU
241
A
ILE
242
n
242
ILE
242
A
GLY
243
n
243
GLY
243
A
GLU
244
n
244
GLU
244
A
TYR
245
n
245
TYR
245
A
PHE
246
n
246
PHE
246
A
GLN
247
n
247
GLN
247
A
VAL
248
n
248
VAL
248
A
GLN
249
n
249
GLN
249
A
ASP
250
n
250
ASP
250
A
ASP
251
n
251
ASP
251
A
VAL
252
n
252
VAL
252
A
MET
253
n
253
MET
253
A
ASP
254
n
254
ASP
254
A
CYS
255
n
255
CYS
255
A
PHE
256
n
256
PHE
256
A
THR
257
n
257
THR
257
A
PRO
258
n
258
PRO
258
A
PRO
259
n
259
PRO
259
A
GLU
260
n
260
GLU
260
A
GLN
261
n
261
GLN
261
A
LEU
262
n
262
LEU
262
A
GLY
263
n
263
GLY
263
A
LYS
264
n
264
LYS
264
A
VAL
265
n
265
VAL
265
A
GLY
266
n
266
GLY
266
A
THR
267
n
267
THR
267
A
ASP
268
n
268
ASP
268
A
ILE
269
n
269
ILE
269
A
GLU
270
n
270
GLU
270
A
ASP
271
n
271
ASP
271
A
ALA
272
n
272
ALA
272
A
LYS
273
n
273
LYS
273
A
CYS
274
n
274
CYS
274
A
SER
275
n
275
SER
275
A
TRP
276
n
276
TRP
276
A
LEU
277
n
277
LEU
277
A
ALA
278
n
278
ALA
278
A
VAL
279
n
279
VAL
279
A
THR
280
n
280
THR
280
A
PHE
281
n
281
PHE
281
A
LEU
282
n
282
LEU
282
A
GLY
283
n
283
GLY
283
A
LYS
284
n
284
LYS
284
A
ALA
285
n
285
ALA
285
A
ASN
286
n
286
ASN
286
A
ALA
287
n
287
ALA
287
A
ALA
288
n
288
ALA
288
A
GLN
289
n
289
GLN
289
A
VAL
290
n
290
VAL
290
A
ALA
291
n
291
ALA
291
A
GLU
292
n
292
GLU
292
A
PHE
293
n
293
PHE
293
A
LYS
294
n
294
LYS
294
A
ALA
295
n
295
ALA
295
A
ASN
296
n
296
ASN
296
A
TYR
297
n
297
TYR
297
A
GLY
298
n
298
GLY
298
A
ASP
299
n
299
ASP
299
A
LYS
300
n
300
LYS
300
A
ASP
301
n
301
ASP
301
A
PRO
302
n
302
PRO
302
A
ALA
303
n
303
ALA
303
A
LYS
304
n
304
LYS
304
A
VAL
305
n
305
VAL
305
A
ALA
306
n
306
ALA
306
A
VAL
307
n
307
VAL
307
A
VAL
308
n
308
VAL
308
A
LYS
309
n
309
LYS
309
A
ARG
310
n
310
ARG
310
A
LEU
311
n
311
LEU
311
A
TYR
312
n
312
TYR
312
A
SER
313
n
313
SER
313
A
GLU
314
n
314
GLU
314
A
ALA
315
n
315
ALA
315
A
ASN
316
n
316
ASN
316
A
LEU
317
n
317
LEU
317
A
GLN
318
n
318
GLN
318
A
ALA
319
n
319
ALA
319
A
ASP
320
n
320
ASP
320
A
PHE
321
n
321
PHE
321
A
ALA
322
n
322
ALA
322
A
ALA
323
n
323
ALA
323
A
TYR
324
n
324
TYR
324
A
GLU
325
n
325
GLU
325
A
ALA
326
n
326
ALA
326
A
GLU
327
n
327
GLU
327
A
VAL
328
n
328
VAL
328
A
VAL
329
n
329
VAL
329
A
ARG
330
n
330
ARG
330
A
GLU
331
n
331
GLU
331
A
VAL
332
n
332
VAL
332
A
GLU
333
n
333
GLU
333
A
SER
334
n
334
SER
334
A
LEU
335
n
335
LEU
335
A
ILE
336
n
336
ILE
336
A
GLU
337
n
337
GLU
337
A
GLN
338
n
338
GLN
338
A
LEU
339
n
339
LEU
339
A
LYS
340
n
340
LYS
340
A
VAL
341
n
341
VAL
341
A
LYS
342
n
342
LYS
342
A
SER
343
n
343
SER
343
A
PRO
344
n
344
PRO
344
A
THR
345
n
345
THR
345
A
PHE
346
n
346
PHE
346
A
ALA
347
n
347
ALA
347
A
GLU
348
n
348
GLU
348
A
SER
349
n
349
SER
349
A
VAL
350
n
350
VAL
350
A
ALA
351
n
351
ALA
351
A
VAL
352
n
352
VAL
352
A
VAL
353
n
353
VAL
353
A
TRP
354
n
354
TRP
354
A
GLU
355
n
355
GLU
355
A
LYS
356
n
356
LYS
356
A
THR
357
n
357
THR
357
A
HIS
358
n
358
HIS
358
A
LYS
359
n
359
LYS
359
A
ARG
360
n
360
ARG
360
A
LYS
361
n
361
LYS
361
A
LYS
362
n
362
LYS
362
A
author_and_software_defined_assembly
PISA
2
dimeric
8790
-142
27230
A
ASP
98
A
OD2
ASP
98
1_555
A
MG
401
C
MG
MG
1_555
A
ASP
102
A
OD2
ASP
102
1_555
90.9
A
ASP
98
A
OD2
ASP
98
1_555
A
MG
401
C
MG
MG
1_555
A
NI9
363
B
O4
NI9
1_555
77.2
A
ASP
102
A
OD2
ASP
102
1_555
A
MG
401
C
MG
MG
1_555
A
NI9
363
B
O4
NI9
1_555
69.4
A
ASP
98
A
OD2
ASP
98
1_555
A
MG
401
C
MG
MG
1_555
A
NI9
363
B
O3
NI9
1_555
71.5
A
ASP
102
A
OD2
ASP
102
1_555
A
MG
401
C
MG
MG
1_555
A
NI9
363
B
O3
NI9
1_555
129.8
A
NI9
363
B
O4
NI9
1_555
A
MG
401
C
MG
MG
1_555
A
NI9
363
B
O3
NI9
1_555
61.0
A
ASP
98
A
OD1
ASP
98
1_555
A
MG
403
E
MG
MG
1_555
A
ASP
102
A
OD2
ASP
102
1_555
75.3
A
ASP
98
A
OD1
ASP
98
1_555
A
MG
403
E
MG
MG
1_555
A
ASP
170
A
OD2
ASP
170
1_555
145.2
A
ASP
102
A
OD2
ASP
102
1_555
A
MG
403
E
MG
MG
1_555
A
ASP
170
A
OD2
ASP
170
1_555
124.7
A
ASP
98
A
OD1
ASP
98
1_555
A
MG
403
E
MG
MG
1_555
A
NI9
363
B
O7
NI9
1_555
90.0
A
ASP
102
A
OD2
ASP
102
1_555
A
MG
403
E
MG
MG
1_555
A
NI9
363
B
O7
NI9
1_555
111.9
A
ASP
170
A
OD2
ASP
170
1_555
A
MG
403
E
MG
MG
1_555
A
NI9
363
B
O7
NI9
1_555
104.7
A
ASP
250
A
OD2
ASP
250
1_555
A
MG
402
D
MG
MG
1_555
A
NI9
363
B
O5
NI9
1_555
61.8
A
ASP
250
A
OD2
ASP
250
1_555
A
MG
402
D
MG
MG
1_555
A
NI9
363
B
O6
NI9
1_555
79.5
A
NI9
363
B
O5
NI9
1_555
A
MG
402
D
MG
MG
1_555
A
NI9
363
B
O6
NI9
1_555
62.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_665
-y+1,-x+1,-z+5/6
crystal symmetry operation
29.0985000000
50.4000804240
325.1858333333
A
N
ARG
107
A
N
ARG
107
A
O
LYS
110
A
O
LYS
110
1
A
SD
MET
4
A
SD
MET
4
1
Y
1
A
CE
MET
4
A
CE
MET
4
1
Y
1
A
VAL
119
-109.09
-64.29
1
A
THR
120
67.00
158.30
1
A
PHE
195
-103.72
65.43
1
A
THR
267
-150.92
-13.04
97.89
45.419
2.00
3.750
1.870
0.000
3.750
0.000
-5.620
0.912
0.873
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.280
0.217
0.220
2.810
50.000
470
9254
5.100
87.840
1.00
1.00
17.424
0.336
RANDOM
1
THROUGHOUT
0.00
FOURIER SYNTHESIS
0.486
0.800
0.800
1.400
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.810
50.000
41
2961
31
0
2889
0.007
0.022
2980
1.041
1.961
4043
4.353
5.000
361
40.273
24.307
137
17.305
15.000
511
18.487
15.000
15
0.072
0.200
445
0.003
0.020
2236
0.192
0.200
1544
0.299
0.200
2108
0.131
0.200
103
0.192
0.200
80
0.174
0.200
12
0.443
2.000
1845
0.822
3.000
2912
9.728
20.000
1291
13.299
30.000
1131
0.369
0.285
2.884
22
490
512
20
68.820
2.800
50.000
3ID0
9382
0.057
1.968
1
19.800
17.100
88.100
0.184
2.80
2.90
726
0.729
9.60
69.90
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.005
Trypanosoma cruzi farnesyl diphosphate synthase homodimer in complex with 3-Fluoro-1-(2-hydroxy-2,2-bisphosphono-ethyl)pyridinium
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
5
N
N
A
MET
1
A
MET
1
HELX_P
A
TYR
26
A
TYR
26
1
1
26
A
ASP
29
A
ASP
29
HELX_P
A
LEU
45
A
LEU
45
1
2
17
A
TYR
49
A
TYR
49
HELX_P
A
VAL
65
A
VAL
65
1
3
17
A
ASP
69
A
ASP
69
HELX_P
A
GLY
103
A
GLY
103
1
4
35
A
TRP
113
A
TRP
113
HELX_P
A
PHE
116
A
PHE
116
5
5
4
A
VAL
119
A
VAL
119
HELX_P
A
PHE
143
A
PHE
143
1
6
25
A
PHE
148
A
PHE
148
HELX_P
A
THR
172
A
THR
172
1
7
25
A
ASP
176
A
ASP
176
HELX_P
A
LEU
180
A
LEU
180
5
8
5
A
THR
196
A
THR
196
HELX_P
A
THR
208
A
THR
208
1
9
13
A
THR
208
A
THR
208
HELX_P
A
TYR
213
A
TYR
213
1
10
6
A
TYR
213
A
TYR
213
HELX_P
A
GLU
225
A
GLU
225
1
11
13
A
GLU
231
A
GLU
231
HELX_P
A
THR
257
A
THR
257
1
12
27
A
PRO
258
A
PRO
258
HELX_P
A
GLY
263
A
GLY
263
1
13
6
A
ASP
268
A
ASP
268
HELX_P
A
ALA
272
A
ALA
272
5
14
5
A
SER
275
A
SER
275
HELX_P
A
GLY
283
A
GLY
283
1
15
9
A
ASN
286
A
ASN
286
HELX_P
A
ALA
295
A
ALA
295
1
16
10
A
ASP
301
A
ASP
301
HELX_P
A
ALA
315
A
ALA
315
1
17
15
A
ASN
316
A
ASN
316
HELX_P
A
LYS
340
A
LYS
340
1
18
25
A
SER
343
A
SER
343
HELX_P
A
ARG
360
A
ARG
360
1
19
18
metalc
2.283
A
ASP
98
A
OD2
ASP
98
1_555
A
MG
401
C
MG
MG
1_555
metalc
2.290
A
ASP
98
A
OD1
ASP
98
1_555
A
MG
403
E
MG
MG
1_555
metalc
2.334
A
ASP
102
A
OD2
ASP
102
1_555
A
MG
401
C
MG
MG
1_555
metalc
2.579
A
ASP
102
A
OD2
ASP
102
1_555
A
MG
403
E
MG
MG
1_555
metalc
2.889
A
ASP
170
A
OD2
ASP
170
1_555
A
MG
403
E
MG
MG
1_555
metalc
2.655
A
ASP
250
A
OD2
ASP
250
1_555
A
MG
402
D
MG
MG
1_555
metalc
2.478
A
NI9
363
B
O4
NI9
1_555
A
MG
401
C
MG
MG
1_555
metalc
2.869
A
NI9
363
B
O3
NI9
1_555
A
MG
401
C
MG
MG
1_555
metalc
2.728
A
NI9
363
B
O5
NI9
1_555
A
MG
402
D
MG
MG
1_555
metalc
2.876
A
NI9
363
B
O6
NI9
1_555
A
MG
402
D
MG
MG
1_555
metalc
2.375
A
NI9
363
B
O7
NI9
1_555
A
MG
403
E
MG
MG
1_555
TRANSFERASE
farnesyl diphosphate synthase, FPPS, bisphosphonate, zoledronate, risedronate, minodronate, Chagas disease, Isoprene biosynthesis, Transferase
Q95WL3_TRYCR
UNP
1
1
Q95WL3
MASMERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDA
CVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVD
YATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAH
LIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQAD
FAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK
1
362
3ID0
1
362
Q95WL3
A
1
1
362
2
anti-parallel
A
MET
106
A
MET
106
A
ARG
107
A
ARG
107
A
LYS
110
A
LYS
110
A
PRO
111
A
PRO
111
BINDING SITE FOR RESIDUE NI9 A 363
A
NI9
363
Software
13
BINDING SITE FOR RESIDUE MG A 401
A
MG
401
Software
3
BINDING SITE FOR RESIDUE MG A 402
A
MG
402
Software
4
BINDING SITE FOR RESIDUE MG A 403
A
MG
403
Software
4
BINDING SITE FOR RESIDUE SO4 A 405
A
SO4
405
Software
3
BINDING SITE FOR RESIDUE SO4 A 406
A
SO4
406
Software
10
A
TYR
94
A
TYR
94
13
1_555
A
ASP
98
A
ASP
98
13
1_555
A
ASP
102
A
ASP
102
13
1_555
A
ARG
107
A
ARG
107
13
1_555
A
GLN
167
A
GLN
167
13
1_555
A
LYS
207
A
LYS
207
13
1_555
A
THR
208
A
THR
208
13
1_555
A
GLN
247
A
GLN
247
13
1_555
A
ASP
250
A
ASP
250
13
1_555
A
LYS
264
A
LYS
264
13
1_555
A
MG
401
C
MG
13
1_555
A
MG
402
D
MG
13
1_555
A
MG
403
E
MG
13
1_555
A
ASP
98
A
ASP
98
3
1_555
A
ASP
102
A
ASP
102
3
1_555
A
NI9
363
B
NI9
3
1_555
A
ASP
250
A
ASP
250
4
1_555
A
ASP
251
A
ASP
251
4
1_555
A
ASP
268
A
ASP
268
4
1_555
A
NI9
363
B
NI9
4
1_555
A
ASP
98
A
ASP
98
4
1_555
A
ASP
102
A
ASP
102
4
1_555
A
ASP
170
A
ASP
170
4
1_555
A
NI9
363
B
NI9
4
1_555
A
LYS
25
A
LYS
25
3
1_555
A
HIS
141
A
HIS
141
3
1_555
A
LYS
158
A
LYS
158
3
10_665
A
GLY
47
A
GLY
47
10
1_555
A
LYS
48
A
LYS
48
10
1_555
A
TYR
49
A
TYR
49
10
1_555
A
PHE
50
A
PHE
50
10
1_555
A
ARG
51
A
ARG
51
10
1_555
A
GLN
91
A
GLN
91
10
1_555
A
ARG
108
A
ARG
108
10
1_555
A
HOH
364
H
HOH
10
1_555
A
HOH
365
H
HOH
10
1_555
A
HOH
396
H
HOH
10
1_555
178
P 61 2 2