0.009096 0.000000 0.000000 0.000000 0.009096 0.000000 0.000000 0.000000 0.012652 0.00000 0.00000 0.00000 Davies, C.W. Maiti, T.K. Das, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 109.938 109.938 79.040 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N N Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 107 9117 9122 10.1073/pnas.0910870107 20439756 Ubiquitin vinyl methyl ester binding orients the misaligned active site of the ubiquitin hydrolase UCHL1 into productive conformation. 2010 10.2210/pdb3irt/pdb pdb_00003irt 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 mirrors CCD 2009-07-06 MARMOSAIC 300 mm CCD Si (111) SINGLE WAVELENGTH M x-ray 1 1.0331 1.0 23-ID-B APS 1.0331 SYNCHROTRON APS BEAMLINE 23-ID-B 25284.836 Ubiquitin carboxyl-terminal hydrolase isozyme L1 3.4.19.12, 6.-.-.- I93M 2 man polymer 35.453 CHLORIDE ION 2 syn non-polymer 18.015 water 35 nat water UCH-L1, Ubiquitin thioesterase L1, Neuron cytoplasmic protein 9.5, PGP 9.5, PGP9.5 no no GPLGSMQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEV SPKVYFMKQTIGNSCGTMGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVD DKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA GPLGSMQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEV SPKVYFMKQTIGNSCGTMGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVD DKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample PGP9.5, UCHL1 9606 Homo sapiens 562 Escherichia coli Rosetta Plasmid pGEX-6P-1 1 2.36 47.91 VAPOR DIFFUSION, HANGING DROP 7.0 2.4 M Ammonium Sulfate, 0.1 M TRIS Hydrochloride, 0.1 M Sodium Sodium Malonate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Database references Derived calculations Data collection Refinement description 1 0 2010-06-09 1 1 2011-07-13 1 2 2021-10-13 1 3 2023-09-06 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Isoleucine 93 to Methionine Mutant RCSB Y RCSB 2009-08-24 REL REL CL CHLORIDE ION HOH water 2ETL One subunit of the asymmetric unit of 2ETL PDB experimental model CL 1 2 CL CL 224 A CL 1 2 CL CL 224 B HOH 4 3 HOH HOH 225 A HOH 11 3 HOH HOH 226 A HOH 14 3 HOH HOH 227 A HOH 15 3 HOH HOH 228 A HOH 16 3 HOH HOH 229 A HOH 19 3 HOH HOH 230 A HOH 20 3 HOH HOH 231 A HOH 21 3 HOH HOH 232 A HOH 24 3 HOH HOH 233 A HOH 28 3 HOH HOH 234 A HOH 31 3 HOH HOH 235 A HOH 32 3 HOH HOH 236 A HOH 33 3 HOH HOH 237 A HOH 37 3 HOH HOH 238 A HOH 41 3 HOH HOH 239 A HOH 1 3 HOH HOH 225 B HOH 7 3 HOH HOH 226 B HOH 8 3 HOH HOH 227 B HOH 9 3 HOH HOH 228 B HOH 10 3 HOH HOH 229 B HOH 12 3 HOH HOH 230 B HOH 13 3 HOH HOH 231 B HOH 17 3 HOH HOH 232 B HOH 18 3 HOH HOH 233 B HOH 22 3 HOH HOH 234 B HOH 25 3 HOH HOH 235 B HOH 26 3 HOH HOH 236 B HOH 27 3 HOH HOH 237 B HOH 29 3 HOH HOH 238 B HOH 30 3 HOH HOH 239 B HOH 35 3 HOH HOH 240 B HOH 36 3 HOH HOH 241 B HOH 38 3 HOH HOH 242 B HOH 39 3 HOH HOH 243 B HOH 42 3 HOH HOH 244 B n 1 -4 A n 2 -3 A n 3 -2 A n 4 -1 A n 5 0 A MET 1 n 6 MET 1 A GLN 2 n 7 GLN 2 A LEU 3 n 8 LEU 3 A LYS 4 n 9 LYS 4 A PRO 5 n 10 PRO 5 A MET 6 n 11 MET 6 A GLU 7 n 12 GLU 7 A ILE 8 n 13 ILE 8 A ASN 9 n 14 ASN 9 A PRO 10 n 15 PRO 10 A GLU 11 n 16 GLU 11 A MET 12 n 17 MET 12 A LEU 13 n 18 LEU 13 A ASN 14 n 19 ASN 14 A LYS 15 n 20 LYS 15 A VAL 16 n 21 VAL 16 A LEU 17 n 22 LEU 17 A SER 18 n 23 SER 18 A ARG 19 n 24 ARG 19 A LEU 20 n 25 LEU 20 A GLY 21 n 26 GLY 21 A VAL 22 n 27 VAL 22 A ALA 23 n 28 ALA 23 A GLY 24 n 29 GLY 24 A GLN 25 n 30 GLN 25 A TRP 26 n 31 TRP 26 A ARG 27 n 32 ARG 27 A PHE 28 n 33 PHE 28 A VAL 29 n 34 VAL 29 A ASP 30 n 35 ASP 30 A VAL 31 n 36 VAL 31 A LEU 32 n 37 LEU 32 A GLY 33 n 38 GLY 33 A LEU 34 n 39 LEU 34 A GLU 35 n 40 GLU 35 A GLU 36 n 41 GLU 36 A GLU 37 n 42 GLU 37 A SER 38 n 43 SER 38 A LEU 39 n 44 LEU 39 A GLY 40 n 45 GLY 40 A SER 41 n 46 SER 41 A VAL 42 n 47 VAL 42 A PRO 43 n 48 PRO 43 A ALA 44 n 49 ALA 44 A PRO 45 n 50 PRO 45 A ALA 46 n 51 ALA 46 A CYS 47 n 52 CYS 47 A ALA 48 n 53 ALA 48 A LEU 49 n 54 LEU 49 A LEU 50 n 55 LEU 50 A LEU 51 n 56 LEU 51 A LEU 52 n 57 LEU 52 A PHE 53 n 58 PHE 53 A PRO 54 n 59 PRO 54 A LEU 55 n 60 LEU 55 A THR 56 n 61 THR 56 A ALA 57 n 62 ALA 57 A GLN 58 n 63 GLN 58 A HIS 59 n 64 HIS 59 A GLU 60 n 65 GLU 60 A ASN 61 n 66 ASN 61 A PHE 62 n 67 PHE 62 A ARG 63 n 68 ARG 63 A LYS 64 n 69 LYS 64 A LYS 65 n 70 LYS 65 A GLN 66 n 71 GLN 66 A ILE 67 n 72 ILE 67 A GLU 68 n 73 GLU 68 A GLU 69 n 74 GLU 69 A LEU 70 n 75 LEU 70 A LYS 71 n 76 LYS 71 A GLY 72 n 77 GLY 72 A GLN 73 n 78 GLN 73 A GLU 74 n 79 GLU 74 A VAL 75 n 80 VAL 75 A SER 76 n 81 SER 76 A PRO 77 n 82 PRO 77 A LYS 78 n 83 LYS 78 A VAL 79 n 84 VAL 79 A TYR 80 n 85 TYR 80 A PHE 81 n 86 PHE 81 A MET 82 n 87 MET 82 A LYS 83 n 88 LYS 83 A GLN 84 n 89 GLN 84 A THR 85 n 90 THR 85 A ILE 86 n 91 ILE 86 A GLY 87 n 92 GLY 87 A ASN 88 n 93 ASN 88 A SER 89 n 94 SER 89 A CYS 90 n 95 CYS 90 A GLY 91 n 96 GLY 91 A THR 92 n 97 THR 92 A MET 93 n 98 MET 93 A GLY 94 n 99 GLY 94 A LEU 95 n 100 LEU 95 A ILE 96 n 101 ILE 96 A HIS 97 n 102 HIS 97 A ALA 98 n 103 ALA 98 A VAL 99 n 104 VAL 99 A ALA 100 n 105 ALA 100 A ASN 101 n 106 ASN 101 A ASN 102 n 107 ASN 102 A GLN 103 n 108 GLN 103 A ASP 104 n 109 ASP 104 A LYS 105 n 110 LYS 105 A LEU 106 n 111 LEU 106 A GLY 107 n 112 GLY 107 A PHE 108 n 113 PHE 108 A GLU 109 n 114 GLU 109 A ASP 110 n 115 ASP 110 A GLY 111 n 116 GLY 111 A SER 112 n 117 SER 112 A VAL 113 n 118 VAL 113 A LEU 114 n 119 LEU 114 A LYS 115 n 120 LYS 115 A GLN 116 n 121 GLN 116 A PHE 117 n 122 PHE 117 A LEU 118 n 123 LEU 118 A SER 119 n 124 SER 119 A GLU 120 n 125 GLU 120 A THR 121 n 126 THR 121 A GLU 122 n 127 GLU 122 A LYS 123 n 128 LYS 123 A MET 124 n 129 MET 124 A SER 125 n 130 SER 125 A PRO 126 n 131 PRO 126 A GLU 127 n 132 GLU 127 A ASP 128 n 133 ASP 128 A ARG 129 n 134 ARG 129 A ALA 130 n 135 ALA 130 A LYS 131 n 136 LYS 131 A CYS 132 n 137 CYS 132 A PHE 133 n 138 PHE 133 A GLU 134 n 139 GLU 134 A LYS 135 n 140 LYS 135 A ASN 136 n 141 ASN 136 A GLU 137 n 142 GLU 137 A ALA 138 n 143 ALA 138 A ILE 139 n 144 ILE 139 A GLN 140 n 145 GLN 140 A ALA 141 n 146 ALA 141 A ALA 142 n 147 ALA 142 A HIS 143 n 148 HIS 143 A ASP 144 n 149 ASP 144 A ALA 145 n 150 ALA 145 A VAL 146 n 151 VAL 146 A ALA 147 n 152 ALA 147 A GLN 148 n 153 GLN 148 A GLU 149 n 154 GLU 149 A GLY 150 n 155 GLY 150 A GLN 151 n 156 GLN 151 A CYS 152 n 157 CYS 152 A ARG 153 n 158 ARG 153 A VAL 154 n 159 VAL 154 A ASP 155 n 160 ASP 155 A ASP 156 n 161 ASP 156 A LYS 157 n 162 LYS 157 A VAL 158 n 163 VAL 158 A ASN 159 n 164 ASN 159 A PHE 160 n 165 PHE 160 A HIS 161 n 166 HIS 161 A PHE 162 n 167 PHE 162 A ILE 163 n 168 ILE 163 A LEU 164 n 169 LEU 164 A PHE 165 n 170 PHE 165 A ASN 166 n 171 ASN 166 A ASN 167 n 172 ASN 167 A VAL 168 n 173 VAL 168 A ASP 169 n 174 ASP 169 A GLY 170 n 175 GLY 170 A HIS 171 n 176 HIS 171 A LEU 172 n 177 LEU 172 A TYR 173 n 178 TYR 173 A GLU 174 n 179 GLU 174 A LEU 175 n 180 LEU 175 A ASP 176 n 181 ASP 176 A GLY 177 n 182 GLY 177 A ARG 178 n 183 ARG 178 A MET 179 n 184 MET 179 A PRO 180 n 185 PRO 180 A PHE 181 n 186 PHE 181 A PRO 182 n 187 PRO 182 A VAL 183 n 188 VAL 183 A ASN 184 n 189 ASN 184 A HIS 185 n 190 HIS 185 A GLY 186 n 191 GLY 186 A ALA 187 n 192 ALA 187 A SER 188 n 193 SER 188 A SER 189 n 194 SER 189 A GLU 190 n 195 GLU 190 A ASP 191 n 196 ASP 191 A THR 192 n 197 THR 192 A LEU 193 n 198 LEU 193 A LEU 194 n 199 LEU 194 A LYS 195 n 200 LYS 195 A ASP 196 n 201 ASP 196 A ALA 197 n 202 ALA 197 A ALA 198 n 203 ALA 198 A LYS 199 n 204 LYS 199 A VAL 200 n 205 VAL 200 A CYS 201 n 206 CYS 201 A ARG 202 n 207 ARG 202 A GLU 203 n 208 GLU 203 A PHE 204 n 209 PHE 204 A THR 205 n 210 THR 205 A GLU 206 n 211 GLU 206 A ARG 207 n 212 ARG 207 A GLU 208 n 213 GLU 208 A GLN 209 n 214 GLN 209 A GLY 210 n 215 GLY 210 A GLU 211 n 216 GLU 211 A VAL 212 n 217 VAL 212 A ARG 213 n 218 ARG 213 A PHE 214 n 219 PHE 214 A SER 215 n 220 SER 215 A ALA 216 n 221 ALA 216 A VAL 217 n 222 VAL 217 A ALA 218 n 223 ALA 218 A LEU 219 n 224 LEU 219 A CYS 220 n 225 CYS 220 A LYS 221 n 226 LYS 221 A ALA 222 n 227 ALA 222 A ALA 223 n 228 ALA 223 A n 1 -4 B n 2 -3 B n 3 -2 B n 4 -1 B n 5 0 B MET 1 n 6 MET 1 B GLN 2 n 7 GLN 2 B LEU 3 n 8 LEU 3 B LYS 4 n 9 LYS 4 B PRO 5 n 10 PRO 5 B MET 6 n 11 MET 6 B GLU 7 n 12 GLU 7 B ILE 8 n 13 ILE 8 B ASN 9 n 14 ASN 9 B PRO 10 n 15 PRO 10 B GLU 11 n 16 GLU 11 B MET 12 n 17 MET 12 B LEU 13 n 18 LEU 13 B ASN 14 n 19 ASN 14 B LYS 15 n 20 LYS 15 B VAL 16 n 21 VAL 16 B LEU 17 n 22 LEU 17 B SER 18 n 23 SER 18 B ARG 19 n 24 ARG 19 B LEU 20 n 25 LEU 20 B GLY 21 n 26 GLY 21 B VAL 22 n 27 VAL 22 B ALA 23 n 28 ALA 23 B GLY 24 n 29 GLY 24 B GLN 25 n 30 GLN 25 B TRP 26 n 31 TRP 26 B ARG 27 n 32 ARG 27 B PHE 28 n 33 PHE 28 B VAL 29 n 34 VAL 29 B ASP 30 n 35 ASP 30 B VAL 31 n 36 VAL 31 B LEU 32 n 37 LEU 32 B GLY 33 n 38 GLY 33 B LEU 34 n 39 LEU 34 B GLU 35 n 40 GLU 35 B GLU 36 n 41 GLU 36 B GLU 37 n 42 GLU 37 B SER 38 n 43 SER 38 B LEU 39 n 44 LEU 39 B GLY 40 n 45 GLY 40 B SER 41 n 46 SER 41 B VAL 42 n 47 VAL 42 B PRO 43 n 48 PRO 43 B ALA 44 n 49 ALA 44 B PRO 45 n 50 PRO 45 B ALA 46 n 51 ALA 46 B CYS 47 n 52 CYS 47 B ALA 48 n 53 ALA 48 B LEU 49 n 54 LEU 49 B LEU 50 n 55 LEU 50 B LEU 51 n 56 LEU 51 B LEU 52 n 57 LEU 52 B PHE 53 n 58 PHE 53 B PRO 54 n 59 PRO 54 B LEU 55 n 60 LEU 55 B THR 56 n 61 THR 56 B ALA 57 n 62 ALA 57 B GLN 58 n 63 GLN 58 B HIS 59 n 64 HIS 59 B GLU 60 n 65 GLU 60 B ASN 61 n 66 ASN 61 B PHE 62 n 67 PHE 62 B ARG 63 n 68 ARG 63 B LYS 64 n 69 LYS 64 B LYS 65 n 70 LYS 65 B GLN 66 n 71 GLN 66 B ILE 67 n 72 ILE 67 B GLU 68 n 73 GLU 68 B GLU 69 n 74 GLU 69 B LEU 70 n 75 LEU 70 B LYS 71 n 76 LYS 71 B GLY 72 n 77 GLY 72 B GLN 73 n 78 GLN 73 B GLU 74 n 79 GLU 74 B VAL 75 n 80 VAL 75 B SER 76 n 81 SER 76 B PRO 77 n 82 PRO 77 B LYS 78 n 83 LYS 78 B VAL 79 n 84 VAL 79 B TYR 80 n 85 TYR 80 B PHE 81 n 86 PHE 81 B MET 82 n 87 MET 82 B LYS 83 n 88 LYS 83 B GLN 84 n 89 GLN 84 B THR 85 n 90 THR 85 B ILE 86 n 91 ILE 86 B GLY 87 n 92 GLY 87 B ASN 88 n 93 ASN 88 B SER 89 n 94 SER 89 B CYS 90 n 95 CYS 90 B GLY 91 n 96 GLY 91 B THR 92 n 97 THR 92 B MET 93 n 98 MET 93 B GLY 94 n 99 GLY 94 B LEU 95 n 100 LEU 95 B ILE 96 n 101 ILE 96 B HIS 97 n 102 HIS 97 B ALA 98 n 103 ALA 98 B VAL 99 n 104 VAL 99 B ALA 100 n 105 ALA 100 B ASN 101 n 106 ASN 101 B ASN 102 n 107 ASN 102 B GLN 103 n 108 GLN 103 B ASP 104 n 109 ASP 104 B LYS 105 n 110 LYS 105 B LEU 106 n 111 LEU 106 B GLY 107 n 112 GLY 107 B PHE 108 n 113 PHE 108 B GLU 109 n 114 GLU 109 B ASP 110 n 115 ASP 110 B GLY 111 n 116 GLY 111 B SER 112 n 117 SER 112 B VAL 113 n 118 VAL 113 B LEU 114 n 119 LEU 114 B LYS 115 n 120 LYS 115 B GLN 116 n 121 GLN 116 B PHE 117 n 122 PHE 117 B LEU 118 n 123 LEU 118 B SER 119 n 124 SER 119 B GLU 120 n 125 GLU 120 B THR 121 n 126 THR 121 B GLU 122 n 127 GLU 122 B LYS 123 n 128 LYS 123 B MET 124 n 129 MET 124 B SER 125 n 130 SER 125 B PRO 126 n 131 PRO 126 B GLU 127 n 132 GLU 127 B ASP 128 n 133 ASP 128 B ARG 129 n 134 ARG 129 B ALA 130 n 135 ALA 130 B LYS 131 n 136 LYS 131 B CYS 132 n 137 CYS 132 B PHE 133 n 138 PHE 133 B GLU 134 n 139 GLU 134 B LYS 135 n 140 LYS 135 B ASN 136 n 141 ASN 136 B GLU 137 n 142 GLU 137 B ALA 138 n 143 ALA 138 B ILE 139 n 144 ILE 139 B GLN 140 n 145 GLN 140 B ALA 141 n 146 ALA 141 B ALA 142 n 147 ALA 142 B HIS 143 n 148 HIS 143 B ASP 144 n 149 ASP 144 B ALA 145 n 150 ALA 145 B VAL 146 n 151 VAL 146 B ALA 147 n 152 ALA 147 B GLN 148 n 153 GLN 148 B GLU 149 n 154 GLU 149 B GLY 150 n 155 GLY 150 B GLN 151 n 156 GLN 151 B CYS 152 n 157 CYS 152 B ARG 153 n 158 ARG 153 B VAL 154 n 159 VAL 154 B ASP 155 n 160 ASP 155 B ASP 156 n 161 ASP 156 B LYS 157 n 162 LYS 157 B VAL 158 n 163 VAL 158 B ASN 159 n 164 ASN 159 B PHE 160 n 165 PHE 160 B HIS 161 n 166 HIS 161 B PHE 162 n 167 PHE 162 B ILE 163 n 168 ILE 163 B LEU 164 n 169 LEU 164 B PHE 165 n 170 PHE 165 B ASN 166 n 171 ASN 166 B ASN 167 n 172 ASN 167 B VAL 168 n 173 VAL 168 B ASP 169 n 174 ASP 169 B GLY 170 n 175 GLY 170 B HIS 171 n 176 HIS 171 B LEU 172 n 177 LEU 172 B TYR 173 n 178 TYR 173 B GLU 174 n 179 GLU 174 B LEU 175 n 180 LEU 175 B ASP 176 n 181 ASP 176 B GLY 177 n 182 GLY 177 B ARG 178 n 183 ARG 178 B MET 179 n 184 MET 179 B PRO 180 n 185 PRO 180 B PHE 181 n 186 PHE 181 B PRO 182 n 187 PRO 182 B VAL 183 n 188 VAL 183 B ASN 184 n 189 ASN 184 B HIS 185 n 190 HIS 185 B GLY 186 n 191 GLY 186 B ALA 187 n 192 ALA 187 B SER 188 n 193 SER 188 B SER 189 n 194 SER 189 B GLU 190 n 195 GLU 190 B ASP 191 n 196 ASP 191 B THR 192 n 197 THR 192 B LEU 193 n 198 LEU 193 B LEU 194 n 199 LEU 194 B LYS 195 n 200 LYS 195 B ASP 196 n 201 ASP 196 B ALA 197 n 202 ALA 197 B ALA 198 n 203 ALA 198 B LYS 199 n 204 LYS 199 B VAL 200 n 205 VAL 200 B CYS 201 n 206 CYS 201 B ARG 202 n 207 ARG 202 B GLU 203 n 208 GLU 203 B PHE 204 n 209 PHE 204 B THR 205 n 210 THR 205 B GLU 206 n 211 GLU 206 B ARG 207 n 212 ARG 207 B GLU 208 n 213 GLU 208 B GLN 209 n 214 GLN 209 B GLY 210 n 215 GLY 210 B GLU 211 n 216 GLU 211 B VAL 212 n 217 VAL 212 B ARG 213 n 218 ARG 213 B PHE 214 n 219 PHE 214 B SER 215 n 220 SER 215 B ALA 216 n 221 ALA 216 B VAL 217 n 222 VAL 217 B ALA 218 n 223 ALA 218 B LEU 219 n 224 LEU 219 B CYS 220 n 225 CYS 220 B LYS 221 n 226 LYS 221 B ALA 222 n 227 ALA 222 B ALA 223 n 228 ALA 223 B author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 29 A N VAL 34 A O ALA 218 A O ALA 223 A O SER 215 A O SER 220 A N LEU 52 A N LEU 57 A N LEU 51 A N LEU 56 A O ILE 163 A O ILE 168 A N LEU 164 A N LEU 169 A O LEU 175 A O LEU 180 A N LEU 172 A N LEU 177 A O HIS 185 A O HIS 190 B N VAL 29 B N VAL 34 B O ALA 218 B O ALA 223 B O SER 215 B O SER 220 B N LEU 52 B N LEU 57 B N LEU 51 B N LEU 56 B O ILE 163 B O ILE 168 B N LEU 164 B N LEU 169 B O LEU 175 B O LEU 180 B N LEU 172 B N LEU 177 B O HIS 185 B O HIS 190 1 A HOH 225 E HOH 1 B HOH 225 F HOH 1 B HOH 228 F HOH 1 A GLY -4 A GLY 1 1 Y 1 A PRO -3 A PRO 2 1 Y 1 A LEU -2 A LEU 3 1 Y 1 A GLY -1 A GLY 4 1 Y 1 A SER 0 A SER 5 1 Y 1 B GLY -4 B GLY 1 1 Y 1 B PRO -3 B PRO 2 1 Y 1 B LEU -2 B LEU 3 1 Y 1 B GLY -1 B GLY 4 1 Y 1 B SER 0 B SER 5 1 Y 1 -6.03 0.50 120.30 114.27 A A A NE CZ NH1 ARG ARG ARG 153 153 153 N 1 5.87 0.50 120.30 126.17 A A A NE CZ NH2 ARG ARG ARG 153 153 153 N 1 5.67 0.50 120.30 125.97 B B B NE CZ NH1 ARG ARG ARG 153 153 153 N 1 -5.94 0.50 120.30 114.36 B B B NE CZ NH2 ARG ARG ARG 153 153 153 N 1 A LEU 34 -110.57 76.22 1 A GLU 36 -38.43 -70.73 1 A SER 38 71.00 -25.98 1 A PRO 43 -48.23 157.81 1 A ASN 88 69.62 -2.73 1 A ASN 102 -148.40 30.29 1 A LYS 123 -111.14 70.84 1 A CYS 152 -109.56 -160.13 1 A ARG 153 -146.52 -100.11 1 A VAL 154 65.62 113.21 1 A ASP 155 -163.33 75.78 1 A GLU 190 -75.88 28.06 1 A ASP 191 -142.69 -27.50 1 A GLU 208 -116.88 67.35 1 A GLN 209 -69.86 36.67 1 B LEU 34 -110.97 76.52 1 B GLU 36 -38.21 -70.39 1 B SER 38 71.16 -26.09 1 B PRO 43 -48.62 157.61 1 B LYS 71 -66.11 -127.89 1 B GLN 73 -146.98 -68.47 1 B GLU 74 -159.76 -17.84 1 B ASN 88 69.77 -2.82 1 B ASN 102 -148.70 30.44 1 B LYS 123 -111.38 70.68 1 B CYS 152 -110.14 -160.39 1 B ARG 153 -146.24 -99.19 1 B VAL 154 65.80 113.64 1 B ASP 155 -163.52 75.63 1 B GLU 190 -75.83 28.46 1 B ASP 191 -143.04 -27.68 1 B GLU 208 -117.10 66.89 1 B GLN 209 -69.13 36.49 67.7 9.9433 0.0000 -0.0000 9.9433 0.0000 -20.2116 0.2538 0.2106 0.2126 2.799 41.748 582 11988 11957 4.87 95.95 1.00 1.00 1.09 1 Isotropic 1.34 MOLECULAR REPLACEMENT 27.78 0.90 1.11 One subunit of the asymmetric unit of 2ETL ML FLAT BULK SOLVENT MODEL 63.015 0.358 2.799 41.748 35 3519 2 0 3482 0.003 3544 0.641 4772 14.325 1336 0.042 520 0.002 638 1 A 1 1728 X-RAY DIFFRACTION POSITIONAL 2 B 1 1728 X-RAY DIFFRACTION POSITIONAL 0.035 0.3634 0.3058 3.0809 131 2473 85.00 0.3329 0.2455 3.5265 153 2865 99.00 0.2211 0.1912 4.4423 147 2936 100.00 0.2189 0.1868 41.7526 151 3101 100.00 2.80 41.75 3IRT 11988 11988 1.78 1.78 0.111 0.111 1 19.98 12.8 96.1 0.540 2.8 2.85 1.78 0.540 6.2 70.0 data collection MAR345dtb phasing MOLREP refinement PHENIX (phenix.refine) data reduction HKL-2000 data scaling HKL-2000 Crystal Structure of the I93M Mutant of Ubiquitin Carboxy-terminal Hydrolase L1 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A ASN 9 A ASN 14 HELX_P A LEU 20 A LEU 25 1 1 12 A GLU 35 A GLU 40 HELX_P A GLY 40 A GLY 45 1 2 6 A THR 56 A THR 61 HELX_P A LEU 70 A LEU 75 1 3 15 A SER 89 A SER 94 HELX_P A ASN 101 A ASN 106 1 4 13 A SER 112 A SER 117 HELX_P A THR 121 A THR 126 1 5 10 A SER 125 A SER 130 HELX_P A ASN 136 A ASN 141 1 6 12 A ASN 136 A ASN 141 HELX_P A GLN 148 A GLN 153 1 7 13 A THR 192 A THR 197 HELX_P A GLU 206 A GLU 211 1 8 15 B ASN 9 B ASN 14 HELX_P B LEU 20 B LEU 25 1 9 12 B GLU 35 B GLU 40 HELX_P B GLY 40 B GLY 45 1 10 6 B THR 56 B THR 61 HELX_P B LEU 70 B LEU 75 1 11 15 B SER 89 B SER 94 HELX_P B ASN 101 B ASN 106 1 12 13 B SER 112 B SER 117 HELX_P B THR 121 B THR 126 1 13 10 B SER 125 B SER 130 HELX_P B ASN 136 B ASN 141 1 14 12 B ASN 136 B ASN 141 HELX_P B GLN 148 B GLN 153 1 15 13 B THR 192 B THR 197 HELX_P B GLU 206 B GLU 211 1 16 15 HYDROLASE, LIGASE Ubiquitin Hydrolase, Parkinson's Disease Mutant, Cytoplasm, Disease mutation, Glycoprotein, Hydrolase, Ligase, Oxidation, Polymorphism, Protease, Thiol protease, Ubl conjugation pathway A ALA 44 A ALA 49 1 A PRO 45 A PRO 50 -2.72 B ALA 44 B ALA 49 1 B PRO 45 B PRO 50 -2.48 chain A and (resseq 1:71 or resseq 74:223 ) chain B and (resseq 1:71 or resseq 74:223 ) UCHL1_HUMAN UNP 1 1 P09936 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVY FMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNF HFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA 1 223 3IRT 1 223 P09936 A 1 6 228 1 223 3IRT 1 223 P09936 B 1 6 228 1 expression tag GLY -4 3IRT A P09936 UNP 1 1 expression tag PRO -3 3IRT A P09936 UNP 2 1 expression tag LEU -2 3IRT A P09936 UNP 3 1 expression tag GLY -1 3IRT A P09936 UNP 4 1 expression tag SER 0 3IRT A P09936 UNP 5 1 ILE engineered mutation MET 93 3IRT A P09936 UNP 93 98 2 expression tag GLY -4 3IRT B P09936 UNP 1 2 expression tag PRO -3 3IRT B P09936 UNP 2 2 expression tag LEU -2 3IRT B P09936 UNP 3 2 expression tag GLY -1 3IRT B P09936 UNP 4 2 expression tag SER 0 3IRT B P09936 UNP 5 2 ILE engineered mutation MET 93 3IRT B P09936 UNP 93 98 6 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TRP 26 A TRP 31 A VAL 31 A VAL 36 A SER 215 A SER 220 A LYS 221 A LYS 226 A ALA 46 A ALA 51 A PRO 54 A PRO 59 A PHE 160 A PHE 165 A ASN 167 A ASN 172 A HIS 171 A HIS 176 A LEU 175 A LEU 180 A VAL 183 A VAL 188 A ALA 187 A ALA 192 B TRP 26 B TRP 31 B VAL 31 B VAL 36 B SER 215 B SER 220 B LYS 221 B LYS 226 B ALA 46 B ALA 51 B PRO 54 B PRO 59 B PHE 160 B PHE 165 B ASN 167 B ASN 172 B HIS 171 B HIS 176 B LEU 175 B LEU 180 B VAL 183 B VAL 188 B ALA 187 B ALA 192 BINDING SITE FOR RESIDUE CL A 224 A CL 224 Software 2 BINDING SITE FOR RESIDUE CL B 224 B CL 224 Software 3 A GLN 84 A GLN 89 2 1_555 A CYS 90 A CYS 95 2 1_555 B GLN 84 B GLN 89 3 1_555 B ASN 88 B ASN 93 3 1_555 B CYS 90 B CYS 95 3 1_555 90 P 4 21 2