0.009397
0.005426
0.000000
0.000000
0.010851
0.000000
0.000000
0.000000
0.019833
0.000000
0.000000
0.000000
Ye, Q.Z.
Lu, J.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
106.412
106.412
50.422
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C11 H7 Cl O3
222.624
5-(2-CHLOROPHENYL)FURAN-2-CARBOXYLIC ACID
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mn 2
54.938
MANGANESE (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
Y
89
N
O
Y
90
N
C
N
91
N
C
N
92
N
O
Y
93
N
C
Y
94
N
C
Y
95
N
C
N
96
N
O
Y
97
N
C
Y
98
N
C
Y
99
N
C
Y
100
N
C
Y
101
N
C
Y
102
N
C
N
103
N
CL
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
S
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
C
N
117
N
C
N
118
N
O
N
119
N
N
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
S
C
N
133
N
C
N
134
N
O
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
N
C
N
152
N
C
N
153
N
O
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
C
Y
165
N
C
Y
166
N
N
Y
167
N
C
Y
168
N
C
Y
169
N
N
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
S
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
N
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
S
N
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
MN
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
N
C
N
302
N
C
N
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
O
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
S
N
329
N
O
N
330
N
O
N
331
N
O
N
332
N
O
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
R
C
N
338
N
O
N
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
N
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
N
388
N
O
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
N
406
N
C
N
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
Y
83
N
sing
Y
84
N
sing
N
85
N
sing
Y
86
N
doub
N
87
N
sing
N
88
N
doub
N
89
N
sing
Y
90
N
sing
N
91
N
sing
Y
92
N
doub
N
93
N
sing
Y
94
N
sing
Y
95
N
doub
Y
96
N
sing
Y
97
N
sing
N
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
Y
163
N
sing
Y
164
N
doub
Y
165
N
doub
N
166
N
sing
Y
167
N
sing
N
168
N
sing
Y
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
Y
271
N
doub
Y
272
N
sing
Y
273
N
sing
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
doub
N
278
N
sing
Y
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
Y
344
N
doub
Y
345
N
sing
Y
346
N
sing
N
347
N
sing
Y
348
N
doub
Y
349
N
sing
Y
350
N
sing
N
351
N
sing
Y
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
Y
372
N
doub
Y
373
N
sing
Y
374
N
sing
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
53
1329
1337
10.1021/jm901624n
20038112
Catalysis and Inhibition of Mycobacterium tuberculosis Methionine Aminopeptidase
2010
10.2210/pdb3iu7/pdb
pdb_00003iu7
1
2008-11-05
SINGLE WAVELENGTH
M
x-ray
1
1
1.0
43.78
642578
0.045
0.66
1.400
50.000
64180
99.90
10.00
19-BM
APS
1
SYNCHROTRON
APS BEAMLINE 19-BM
31211.256
Methionine aminopeptidase
3.4.11.18
1
man
polymer
54.938
MANGANESE (II) ION
2
syn
non-polymer
222.624
5-(2-CHLOROPHENYL)FURAN-2-CARBOXYLIC ACID
2
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
249
nat
water
MAP, Peptidase M
no
no
MASMPSRTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDEL
DRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHR
LLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTI
EPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILTCL
MASMPSRTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDEL
DRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHR
LLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTI
EPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILTCL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
H37Rv
sample
map, mapB, MT2929, MTV003.07c, Rv2861c
1773
Mycobacterium tuberculosis
562
Escherichia coli
BL21(DE3)
plasmid
pGEMEX-1
1
2.68
54.04
VAPOR DIFFUSION, HANGING DROP
5.5
0.1 M Bis-Tris, pH 5.5, 1.1 M AMS, 50 mM NaCl, vapor diffusion, hanging drop, temperature 298K
298
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-01-12
1
1
2011-07-13
1
2
2017-11-01
1
3
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
E. coli methionine aminopeptidase complexed with the same inhibitor
The same protein complexed with Met
RCSB
Y
RCSB
2009-08-30
REL
REL
0.024
0.476
98.80
10.60
0.030
0.732
99.70
7.60
0.036
0.735
100.00
9.60
0.037
0.675
100.00
10.20
0.060
1.203
100.00
10.00
0.041
0.578
100.00
10.30
0.045
0.531
100.00
10.40
0.070
0.983
100.00
10.30
0.067
0.732
100.00
10.30
0.069
0.639
100.00
10.30
0.075
0.553
100.00
10.30
0.081
0.529
100.00
10.30
0.092
0.547
100.00
10.30
0.103
0.555
100.00
10.30
0.114
0.553
100.00
10.30
0.126
0.585
100.00
10.30
0.149
0.627
100.00
10.30
0.160
0.573
100.00
10.20
0.184
0.658
100.00
9.80
0.215
0.745
100.00
8.30
MN
MANGANESE (II) ION
FCD
5-(2-CHLOROPHENYL)FURAN-2-CARBOXYLIC ACID
SO4
SULFATE ION
CL
CHLORIDE ION
HOH
water
1YJ3
PDB entry 1YJ3
PDB
experimental model
MN
1
2
MN
MN
286
A
MN
2
2
MN
MN
287
A
FCD
1
3
FCD
FCD
288
A
FCD
1
3
FCD
FCD
289
A
SO4
1
4
SO4
SO4
290
A
CL
1
5
CL
CL
291
A
HOH
2
6
HOH
HOH
292
A
HOH
3
6
HOH
HOH
293
A
HOH
4
6
HOH
HOH
294
A
HOH
5
6
HOH
HOH
295
A
HOH
6
6
HOH
HOH
296
A
HOH
7
6
HOH
HOH
297
A
HOH
8
6
HOH
HOH
298
A
HOH
9
6
HOH
HOH
299
A
HOH
10
6
HOH
HOH
300
A
HOH
11
6
HOH
HOH
301
A
HOH
12
6
HOH
HOH
302
A
HOH
13
6
HOH
HOH
303
A
HOH
14
6
HOH
HOH
304
A
HOH
15
6
HOH
HOH
305
A
HOH
16
6
HOH
HOH
306
A
HOH
17
6
HOH
HOH
307
A
HOH
18
6
HOH
HOH
308
A
HOH
19
6
HOH
HOH
309
A
HOH
20
6
HOH
HOH
310
A
HOH
21
6
HOH
HOH
311
A
HOH
22
6
HOH
HOH
312
A
HOH
23
6
HOH
HOH
313
A
HOH
24
6
HOH
HOH
314
A
HOH
25
6
HOH
HOH
315
A
HOH
26
6
HOH
HOH
316
A
HOH
27
6
HOH
HOH
317
A
HOH
28
6
HOH
HOH
318
A
HOH
29
6
HOH
HOH
319
A
HOH
30
6
HOH
HOH
320
A
HOH
31
6
HOH
HOH
321
A
HOH
32
6
HOH
HOH
322
A
HOH
33
6
HOH
HOH
323
A
HOH
34
6
HOH
HOH
324
A
HOH
35
6
HOH
HOH
325
A
HOH
36
6
HOH
HOH
326
A
HOH
37
6
HOH
HOH
327
A
HOH
38
6
HOH
HOH
328
A
HOH
39
6
HOH
HOH
329
A
HOH
40
6
HOH
HOH
330
A
HOH
41
6
HOH
HOH
331
A
HOH
42
6
HOH
HOH
332
A
HOH
43
6
HOH
HOH
333
A
HOH
44
6
HOH
HOH
334
A
HOH
45
6
HOH
HOH
335
A
HOH
46
6
HOH
HOH
336
A
HOH
47
6
HOH
HOH
337
A
HOH
48
6
HOH
HOH
338
A
HOH
49
6
HOH
HOH
339
A
HOH
50
6
HOH
HOH
340
A
HOH
51
6
HOH
HOH
341
A
HOH
52
6
HOH
HOH
342
A
HOH
53
6
HOH
HOH
343
A
HOH
54
6
HOH
HOH
344
A
HOH
55
6
HOH
HOH
345
A
HOH
56
6
HOH
HOH
346
A
HOH
57
6
HOH
HOH
347
A
HOH
58
6
HOH
HOH
348
A
HOH
59
6
HOH
HOH
349
A
HOH
60
6
HOH
HOH
350
A
HOH
61
6
HOH
HOH
351
A
HOH
62
6
HOH
HOH
352
A
HOH
63
6
HOH
HOH
353
A
HOH
64
6
HOH
HOH
354
A
HOH
65
6
HOH
HOH
355
A
HOH
66
6
HOH
HOH
356
A
HOH
67
6
HOH
HOH
357
A
HOH
68
6
HOH
HOH
358
A
HOH
69
6
HOH
HOH
359
A
HOH
70
6
HOH
HOH
360
A
HOH
71
6
HOH
HOH
361
A
HOH
72
6
HOH
HOH
362
A
HOH
73
6
HOH
HOH
363
A
HOH
74
6
HOH
HOH
364
A
HOH
75
6
HOH
HOH
365
A
HOH
76
6
HOH
HOH
366
A
HOH
77
6
HOH
HOH
367
A
HOH
78
6
HOH
HOH
368
A
HOH
79
6
HOH
HOH
369
A
HOH
80
6
HOH
HOH
370
A
HOH
81
6
HOH
HOH
371
A
HOH
82
6
HOH
HOH
372
A
HOH
83
6
HOH
HOH
373
A
HOH
84
6
HOH
HOH
374
A
HOH
85
6
HOH
HOH
375
A
HOH
86
6
HOH
HOH
376
A
HOH
87
6
HOH
HOH
377
A
HOH
88
6
HOH
HOH
378
A
HOH
89
6
HOH
HOH
379
A
HOH
90
6
HOH
HOH
380
A
HOH
91
6
HOH
HOH
381
A
HOH
92
6
HOH
HOH
382
A
HOH
93
6
HOH
HOH
383
A
HOH
94
6
HOH
HOH
384
A
HOH
95
6
HOH
HOH
385
A
HOH
96
6
HOH
HOH
386
A
HOH
97
6
HOH
HOH
387
A
HOH
98
6
HOH
HOH
388
A
HOH
99
6
HOH
HOH
389
A
HOH
100
6
HOH
HOH
390
A
HOH
101
6
HOH
HOH
391
A
HOH
102
6
HOH
HOH
392
A
HOH
103
6
HOH
HOH
393
A
HOH
104
6
HOH
HOH
394
A
HOH
105
6
HOH
HOH
395
A
HOH
106
6
HOH
HOH
396
A
HOH
107
6
HOH
HOH
397
A
HOH
108
6
HOH
HOH
398
A
HOH
109
6
HOH
HOH
399
A
HOH
110
6
HOH
HOH
400
A
HOH
111
6
HOH
HOH
401
A
HOH
112
6
HOH
HOH
402
A
HOH
113
6
HOH
HOH
403
A
HOH
114
6
HOH
HOH
404
A
HOH
115
6
HOH
HOH
405
A
HOH
116
6
HOH
HOH
406
A
HOH
117
6
HOH
HOH
407
A
HOH
118
6
HOH
HOH
408
A
HOH
119
6
HOH
HOH
409
A
HOH
120
6
HOH
HOH
410
A
HOH
121
6
HOH
HOH
411
A
HOH
122
6
HOH
HOH
412
A
HOH
123
6
HOH
HOH
413
A
HOH
124
6
HOH
HOH
414
A
HOH
125
6
HOH
HOH
415
A
HOH
126
6
HOH
HOH
416
A
HOH
127
6
HOH
HOH
417
A
HOH
128
6
HOH
HOH
418
A
HOH
129
6
HOH
HOH
419
A
HOH
130
6
HOH
HOH
420
A
HOH
131
6
HOH
HOH
421
A
HOH
132
6
HOH
HOH
422
A
HOH
133
6
HOH
HOH
423
A
HOH
134
6
HOH
HOH
424
A
HOH
135
6
HOH
HOH
425
A
HOH
136
6
HOH
HOH
426
A
HOH
137
6
HOH
HOH
427
A
HOH
138
6
HOH
HOH
428
A
HOH
139
6
HOH
HOH
429
A
HOH
140
6
HOH
HOH
430
A
HOH
141
6
HOH
HOH
431
A
HOH
142
6
HOH
HOH
432
A
HOH
143
6
HOH
HOH
433
A
HOH
144
6
HOH
HOH
434
A
HOH
145
6
HOH
HOH
435
A
HOH
146
6
HOH
HOH
436
A
HOH
147
6
HOH
HOH
437
A
HOH
148
6
HOH
HOH
438
A
HOH
149
6
HOH
HOH
439
A
HOH
150
6
HOH
HOH
440
A
HOH
151
6
HOH
HOH
441
A
HOH
152
6
HOH
HOH
442
A
HOH
153
6
HOH
HOH
443
A
HOH
154
6
HOH
HOH
444
A
HOH
155
6
HOH
HOH
445
A
HOH
156
6
HOH
HOH
446
A
HOH
157
6
HOH
HOH
447
A
HOH
158
6
HOH
HOH
448
A
HOH
159
6
HOH
HOH
449
A
HOH
160
6
HOH
HOH
450
A
HOH
161
6
HOH
HOH
451
A
HOH
162
6
HOH
HOH
452
A
HOH
163
6
HOH
HOH
453
A
HOH
164
6
HOH
HOH
454
A
HOH
165
6
HOH
HOH
455
A
HOH
166
6
HOH
HOH
456
A
HOH
167
6
HOH
HOH
457
A
HOH
168
6
HOH
HOH
458
A
HOH
169
6
HOH
HOH
459
A
HOH
170
6
HOH
HOH
460
A
HOH
171
6
HOH
HOH
461
A
HOH
172
6
HOH
HOH
462
A
HOH
173
6
HOH
HOH
463
A
HOH
174
6
HOH
HOH
464
A
HOH
175
6
HOH
HOH
465
A
HOH
176
6
HOH
HOH
466
A
HOH
177
6
HOH
HOH
467
A
HOH
178
6
HOH
HOH
468
A
HOH
179
6
HOH
HOH
469
A
HOH
180
6
HOH
HOH
470
A
HOH
181
6
HOH
HOH
471
A
HOH
182
6
HOH
HOH
472
A
HOH
183
6
HOH
HOH
473
A
HOH
184
6
HOH
HOH
474
A
HOH
185
6
HOH
HOH
475
A
HOH
186
6
HOH
HOH
476
A
HOH
187
6
HOH
HOH
477
A
HOH
188
6
HOH
HOH
478
A
HOH
189
6
HOH
HOH
479
A
HOH
190
6
HOH
HOH
480
A
HOH
191
6
HOH
HOH
481
A
HOH
192
6
HOH
HOH
482
A
HOH
193
6
HOH
HOH
483
A
HOH
194
6
HOH
HOH
484
A
HOH
195
6
HOH
HOH
485
A
HOH
196
6
HOH
HOH
486
A
HOH
197
6
HOH
HOH
487
A
HOH
198
6
HOH
HOH
488
A
HOH
199
6
HOH
HOH
489
A
HOH
200
6
HOH
HOH
490
A
HOH
201
6
HOH
HOH
491
A
HOH
202
6
HOH
HOH
492
A
HOH
203
6
HOH
HOH
493
A
HOH
204
6
HOH
HOH
494
A
HOH
205
6
HOH
HOH
495
A
HOH
206
6
HOH
HOH
496
A
HOH
207
6
HOH
HOH
497
A
HOH
208
6
HOH
HOH
498
A
HOH
209
6
HOH
HOH
499
A
HOH
210
6
HOH
HOH
500
A
HOH
211
6
HOH
HOH
501
A
HOH
212
6
HOH
HOH
502
A
HOH
213
6
HOH
HOH
503
A
HOH
214
6
HOH
HOH
504
A
HOH
215
6
HOH
HOH
505
A
HOH
216
6
HOH
HOH
506
A
HOH
217
6
HOH
HOH
507
A
HOH
218
6
HOH
HOH
508
A
HOH
219
6
HOH
HOH
509
A
HOH
220
6
HOH
HOH
510
A
HOH
221
6
HOH
HOH
511
A
HOH
222
6
HOH
HOH
512
A
HOH
223
6
HOH
HOH
513
A
HOH
224
6
HOH
HOH
514
A
HOH
225
6
HOH
HOH
515
A
HOH
226
6
HOH
HOH
516
A
HOH
227
6
HOH
HOH
517
A
HOH
228
6
HOH
HOH
518
A
HOH
229
6
HOH
HOH
519
A
HOH
230
6
HOH
HOH
520
A
HOH
231
6
HOH
HOH
521
A
HOH
232
6
HOH
HOH
522
A
HOH
233
6
HOH
HOH
523
A
HOH
234
6
HOH
HOH
524
A
HOH
235
6
HOH
HOH
525
A
HOH
236
6
HOH
HOH
526
A
HOH
237
6
HOH
HOH
527
A
HOH
238
6
HOH
HOH
528
A
HOH
239
6
HOH
HOH
529
A
HOH
240
6
HOH
HOH
530
A
HOH
241
6
HOH
HOH
531
A
HOH
242
6
HOH
HOH
532
A
HOH
243
6
HOH
HOH
533
A
HOH
244
6
HOH
HOH
534
A
HOH
245
6
HOH
HOH
535
A
HOH
246
6
HOH
HOH
536
A
HOH
247
6
HOH
HOH
537
A
HOH
248
6
HOH
HOH
538
A
HOH
249
6
HOH
HOH
539
A
HOH
1
6
HOH
HOH
540
A
1.540
1.540
21.140
21.140
n
1
-2
A
n
2
-1
A
n
3
0
A
n
4
1
A
PRO
2
n
5
PRO
2
A
SER
3
n
6
SER
3
A
ARG
4
n
7
ARG
4
A
THR
5
n
8
THR
5
A
ALA
6
n
9
ALA
6
A
LEU
7
n
10
LEU
7
A
SER
8
n
11
SER
8
A
PRO
9
n
12
PRO
9
A
GLY
10
n
13
GLY
10
A
VAL
11
n
14
VAL
11
A
LEU
12
n
15
LEU
12
A
SER
13
n
16
SER
13
A
PRO
14
n
17
PRO
14
A
THR
15
n
18
THR
15
A
ARG
16
n
19
ARG
16
A
PRO
17
n
20
PRO
17
A
VAL
18
n
21
VAL
18
A
PRO
19
n
22
PRO
19
A
ASN
20
n
23
ASN
20
A
TRP
21
n
24
TRP
21
A
ILE
22
n
25
ILE
22
A
ALA
23
n
26
ALA
23
A
ARG
24
n
27
ARG
24
A
PRO
25
n
28
PRO
25
A
GLU
26
n
29
GLU
26
A
TYR
27
n
30
TYR
27
A
VAL
28
n
31
VAL
28
A
GLY
29
n
32
GLY
29
A
LYS
30
n
33
LYS
30
A
PRO
31
n
34
PRO
31
A
ALA
32
n
35
ALA
32
A
ALA
33
n
36
ALA
33
A
GLN
34
n
37
GLN
34
A
GLU
35
n
38
GLU
35
A
GLY
36
n
39
GLY
36
A
SER
37
n
40
SER
37
A
GLU
38
n
41
GLU
38
A
PRO
39
n
42
PRO
39
A
TRP
40
n
43
TRP
40
A
VAL
41
n
44
VAL
41
A
GLN
42
n
45
GLN
42
A
THR
43
n
46
THR
43
A
PRO
44
n
47
PRO
44
A
GLU
45
n
48
GLU
45
A
VAL
46
n
49
VAL
46
A
ILE
47
n
50
ILE
47
A
GLU
48
n
51
GLU
48
A
LYS
49
n
52
LYS
49
A
MET
50
n
53
MET
50
A
ARG
51
n
54
ARG
51
A
VAL
52
n
55
VAL
52
A
ALA
53
n
56
ALA
53
A
GLY
54
n
57
GLY
54
A
ARG
55
n
58
ARG
55
A
ILE
56
n
59
ILE
56
A
ALA
57
n
60
ALA
57
A
ALA
58
n
61
ALA
58
A
GLY
59
n
62
GLY
59
A
ALA
60
n
63
ALA
60
A
LEU
61
n
64
LEU
61
A
ALA
62
n
65
ALA
62
A
GLU
63
n
66
GLU
63
A
ALA
64
n
67
ALA
64
A
GLY
65
n
68
GLY
65
A
LYS
66
n
69
LYS
66
A
ALA
67
n
70
ALA
67
A
VAL
68
n
71
VAL
68
A
ALA
69
n
72
ALA
69
A
PRO
70
n
73
PRO
70
A
GLY
71
n
74
GLY
71
A
VAL
72
n
75
VAL
72
A
THR
73
n
76
THR
73
A
THR
74
n
77
THR
74
A
ASP
75
n
78
ASP
75
A
GLU
76
n
79
GLU
76
A
LEU
77
n
80
LEU
77
A
ASP
78
n
81
ASP
78
A
ARG
79
n
82
ARG
79
A
ILE
80
n
83
ILE
80
A
ALA
81
n
84
ALA
81
A
HIS
82
n
85
HIS
82
A
GLU
83
n
86
GLU
83
A
TYR
84
n
87
TYR
84
A
LEU
85
n
88
LEU
85
A
VAL
86
n
89
VAL
86
A
ASP
87
n
90
ASP
87
A
ASN
88
n
91
ASN
88
A
GLY
89
n
92
GLY
89
A
ALA
90
n
93
ALA
90
A
TYR
91
n
94
TYR
91
A
PRO
92
n
95
PRO
92
A
SER
93
n
96
SER
93
A
THR
94
n
97
THR
94
A
LEU
95
n
98
LEU
95
A
GLY
96
n
99
GLY
96
A
TYR
97
n
100
TYR
97
A
LYS
98
n
101
LYS
98
A
GLY
99
n
102
GLY
99
A
PHE
100
n
103
PHE
100
A
PRO
101
n
104
PRO
101
A
LYS
102
n
105
LYS
102
A
SER
103
n
106
SER
103
A
CYS
104
n
107
CYS
104
A
CYS
105
n
108
CYS
105
A
THR
106
n
109
THR
106
A
SER
107
n
110
SER
107
A
LEU
108
n
111
LEU
108
A
ASN
109
n
112
ASN
109
A
GLU
110
n
113
GLU
110
A
VAL
111
n
114
VAL
111
A
ILE
112
n
115
ILE
112
A
CYS
113
n
116
CYS
113
A
HIS
114
n
117
HIS
114
A
GLY
115
n
118
GLY
115
A
ILE
116
n
119
ILE
116
A
PRO
117
n
120
PRO
117
A
ASP
118
n
121
ASP
118
A
SER
119
n
122
SER
119
A
THR
120
n
123
THR
120
A
VAL
121
n
124
VAL
121
A
ILE
122
n
125
ILE
122
A
THR
123
n
126
THR
123
A
ASP
124
n
127
ASP
124
A
GLY
125
n
128
GLY
125
A
ASP
126
n
129
ASP
126
A
ILE
127
n
130
ILE
127
A
VAL
128
n
131
VAL
128
A
ASN
129
n
132
ASN
129
A
ILE
130
n
133
ILE
130
A
ASP
131
n
134
ASP
131
A
VAL
132
n
135
VAL
132
A
THR
133
n
136
THR
133
A
ALA
134
n
137
ALA
134
A
TYR
135
n
138
TYR
135
A
ILE
136
n
139
ILE
136
A
GLY
137
n
140
GLY
137
A
GLY
138
n
141
GLY
138
A
VAL
139
n
142
VAL
139
A
HIS
140
n
143
HIS
140
A
GLY
141
n
144
GLY
141
A
ASP
142
n
145
ASP
142
A
THR
143
n
146
THR
143
A
ASN
144
n
147
ASN
144
A
ALA
145
n
148
ALA
145
A
THR
146
n
149
THR
146
A
PHE
147
n
150
PHE
147
A
PRO
148
n
151
PRO
148
A
ALA
149
n
152
ALA
149
A
GLY
150
n
153
GLY
150
A
ASP
151
n
154
ASP
151
A
VAL
152
n
155
VAL
152
A
ALA
153
n
156
ALA
153
A
ASP
154
n
157
ASP
154
A
GLU
155
n
158
GLU
155
A
HIS
156
n
159
HIS
156
A
ARG
157
n
160
ARG
157
A
LEU
158
n
161
LEU
158
A
LEU
159
n
162
LEU
159
A
VAL
160
n
163
VAL
160
A
ASP
161
n
164
ASP
161
A
ARG
162
n
165
ARG
162
A
THR
163
n
166
THR
163
A
ARG
164
n
167
ARG
164
A
GLU
165
n
168
GLU
165
A
ALA
166
n
169
ALA
166
A
THR
167
n
170
THR
167
A
MET
168
n
171
MET
168
A
ARG
169
n
172
ARG
169
A
ALA
170
n
173
ALA
170
A
ILE
171
n
174
ILE
171
A
ASN
172
n
175
ASN
172
A
THR
173
n
176
THR
173
A
VAL
174
n
177
VAL
174
A
LYS
175
n
178
LYS
175
A
PRO
176
n
179
PRO
176
A
GLY
177
n
180
GLY
177
A
ARG
178
n
181
ARG
178
A
ALA
179
n
182
ALA
179
A
LEU
180
n
183
LEU
180
A
SER
181
n
184
SER
181
A
VAL
182
n
185
VAL
182
A
ILE
183
n
186
ILE
183
A
GLY
184
n
187
GLY
184
A
ARG
185
n
188
ARG
185
A
VAL
186
n
189
VAL
186
A
ILE
187
n
190
ILE
187
A
GLU
188
n
191
GLU
188
A
SER
189
n
192
SER
189
A
TYR
190
n
193
TYR
190
A
ALA
191
n
194
ALA
191
A
ASN
192
n
195
ASN
192
A
ARG
193
n
196
ARG
193
A
PHE
194
n
197
PHE
194
A
GLY
195
n
198
GLY
195
A
TYR
196
n
199
TYR
196
A
ASN
197
n
200
ASN
197
A
VAL
198
n
201
VAL
198
A
VAL
199
n
202
VAL
199
A
ARG
200
n
203
ARG
200
A
ASP
201
n
204
ASP
201
A
PHE
202
n
205
PHE
202
A
THR
203
n
206
THR
203
A
GLY
204
n
207
GLY
204
A
HIS
205
n
208
HIS
205
A
GLY
206
n
209
GLY
206
A
ILE
207
n
210
ILE
207
A
GLY
208
n
211
GLY
208
A
THR
209
n
212
THR
209
A
THR
210
n
213
THR
210
A
PHE
211
n
214
PHE
211
A
HIS
212
n
215
HIS
212
A
ASN
213
n
216
ASN
213
A
GLY
214
n
217
GLY
214
A
LEU
215
n
218
LEU
215
A
VAL
216
n
219
VAL
216
A
VAL
217
n
220
VAL
217
A
LEU
218
n
221
LEU
218
A
HIS
219
n
222
HIS
219
A
TYR
220
n
223
TYR
220
A
ASP
221
n
224
ASP
221
A
GLN
222
n
225
GLN
222
A
PRO
223
n
226
PRO
223
A
ALA
224
n
227
ALA
224
A
VAL
225
n
228
VAL
225
A
GLU
226
n
229
GLU
226
A
THR
227
n
230
THR
227
A
ILE
228
n
231
ILE
228
A
MET
229
n
232
MET
229
A
GLN
230
n
233
GLN
230
A
PRO
231
n
234
PRO
231
A
GLY
232
n
235
GLY
232
A
MET
233
n
236
MET
233
A
THR
234
n
237
THR
234
A
PHE
235
n
238
PHE
235
A
THR
236
n
239
THR
236
A
ILE
237
n
240
ILE
237
A
GLU
238
n
241
GLU
238
A
PRO
239
n
242
PRO
239
A
MET
240
n
243
MET
240
A
ILE
241
n
244
ILE
241
A
ASN
242
n
245
ASN
242
A
LEU
243
n
246
LEU
243
A
GLY
244
n
247
GLY
244
A
ALA
245
n
248
ALA
245
A
LEU
246
n
249
LEU
246
A
ASP
247
n
250
ASP
247
A
TYR
248
n
251
TYR
248
A
GLU
249
n
252
GLU
249
A
ILE
250
n
253
ILE
250
A
TRP
251
n
254
TRP
251
A
ASP
252
n
255
ASP
252
A
ASP
253
n
256
ASP
253
A
GLY
254
n
257
GLY
254
A
TRP
255
n
258
TRP
255
A
THR
256
n
259
THR
256
A
VAL
257
n
260
VAL
257
A
VAL
258
n
261
VAL
258
A
THR
259
n
262
THR
259
A
LYS
260
n
263
LYS
260
A
ASP
261
n
264
ASP
261
A
ARG
262
n
265
ARG
262
A
LYS
263
n
266
LYS
263
A
TRP
264
n
267
TRP
264
A
THR
265
n
268
THR
265
A
ALA
266
n
269
ALA
266
A
GLN
267
n
270
GLN
267
A
PHE
268
n
271
PHE
268
A
GLU
269
n
272
GLU
269
A
HIS
270
n
273
HIS
270
A
THR
271
n
274
THR
271
A
LEU
272
n
275
LEU
272
A
LEU
273
n
276
LEU
273
A
VAL
274
n
277
VAL
274
A
THR
275
n
278
THR
275
A
ASP
276
n
279
ASP
276
A
THR
277
n
280
THR
277
A
GLY
278
n
281
GLY
278
A
VAL
279
n
282
VAL
279
A
GLU
280
n
283
GLU
280
A
ILE
281
n
284
ILE
281
A
LEU
282
n
285
LEU
282
A
THR
283
n
286
THR
283
A
CYS
284
n
287
CYS
284
A
LEU
285
n
288
LEU
285
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
3
trimeric
3930
-20
31200
A
ASP
131
A
OD1
ASP
134
1_555
A
MN
286
B
MN
MN
1_555
A
ASP
131
A
OD2
ASP
134
1_555
57.5
A
ASP
131
A
OD1
ASP
134
1_555
A
MN
286
B
MN
MN
1_555
A
ASP
142
A
OD2
ASP
145
1_555
103.8
A
ASP
131
A
OD2
ASP
134
1_555
A
MN
286
B
MN
MN
1_555
A
ASP
142
A
OD2
ASP
145
1_555
161.3
A
ASP
131
A
OD1
ASP
134
1_555
A
MN
286
B
MN
MN
1_555
A
GLU
269
A
OE2
GLU
272
1_555
95.0
A
ASP
131
A
OD2
ASP
134
1_555
A
MN
286
B
MN
MN
1_555
A
GLU
269
A
OE2
GLU
272
1_555
91.8
A
ASP
142
A
OD2
ASP
145
1_555
A
MN
286
B
MN
MN
1_555
A
GLU
269
A
OE2
GLU
272
1_555
88.3
A
ASP
131
A
OD1
ASP
134
1_555
A
MN
286
B
MN
MN
1_555
A
FCD
288
D
OXT
FCD
1_555
147.3
A
ASP
131
A
OD2
ASP
134
1_555
A
MN
286
B
MN
MN
1_555
A
FCD
288
D
OXT
FCD
1_555
91.5
A
ASP
142
A
OD2
ASP
145
1_555
A
MN
286
B
MN
MN
1_555
A
FCD
288
D
OXT
FCD
1_555
107.2
A
GLU
269
A
OE2
GLU
272
1_555
A
MN
286
B
MN
MN
1_555
A
FCD
288
D
OXT
FCD
1_555
96.1
A
ASP
131
A
OD1
ASP
134
1_555
A
MN
286
B
MN
MN
1_555
A
HOH
539
H
O
HOH
1_555
82.8
A
ASP
131
A
OD2
ASP
134
1_555
A
MN
286
B
MN
MN
1_555
A
HOH
539
H
O
HOH
1_555
92.3
A
ASP
142
A
OD2
ASP
145
1_555
A
MN
286
B
MN
MN
1_555
A
HOH
539
H
O
HOH
1_555
86.2
A
GLU
269
A
OE2
GLU
272
1_555
A
MN
286
B
MN
MN
1_555
A
HOH
539
H
O
HOH
1_555
173.5
A
FCD
288
D
OXT
FCD
1_555
A
MN
286
B
MN
MN
1_555
A
HOH
539
H
O
HOH
1_555
88.9
A
ASP
142
A
OD1
ASP
145
1_555
A
MN
287
C
MN
MN
1_555
A
HIS
205
A
NE2
HIS
208
1_555
89.4
A
ASP
142
A
OD1
ASP
145
1_555
A
MN
287
C
MN
MN
1_555
A
GLU
238
A
OE2
GLU
241
1_555
152.3
A
HIS
205
A
NE2
HIS
208
1_555
A
MN
287
C
MN
MN
1_555
A
GLU
238
A
OE2
GLU
241
1_555
84.4
A
ASP
142
A
OD1
ASP
145
1_555
A
MN
287
C
MN
MN
1_555
A
GLU
269
A
OE1
GLU
272
1_555
80.3
A
HIS
205
A
NE2
HIS
208
1_555
A
MN
287
C
MN
MN
1_555
A
GLU
269
A
OE1
GLU
272
1_555
127.3
A
GLU
238
A
OE2
GLU
241
1_555
A
MN
287
C
MN
MN
1_555
A
GLU
269
A
OE1
GLU
272
1_555
82.2
A
ASP
142
A
OD1
ASP
145
1_555
A
MN
287
C
MN
MN
1_555
A
FCD
288
D
OB
FCD
1_555
101.7
A
HIS
205
A
NE2
HIS
208
1_555
A
MN
287
C
MN
MN
1_555
A
FCD
288
D
OB
FCD
1_555
81.5
A
GLU
238
A
OE2
GLU
241
1_555
A
MN
287
C
MN
MN
1_555
A
FCD
288
D
OB
FCD
1_555
103.9
A
GLU
269
A
OE1
GLU
272
1_555
A
MN
287
C
MN
MN
1_555
A
FCD
288
D
OB
FCD
1_555
151.3
A
ASP
142
A
OD1
ASP
145
1_555
A
MN
287
C
MN
MN
1_555
A
FCD
288
D
OXT
FCD
1_555
91.1
A
HIS
205
A
NE2
HIS
208
1_555
A
MN
287
C
MN
MN
1_555
A
FCD
288
D
OXT
FCD
1_555
136.5
A
GLU
238
A
OE2
GLU
241
1_555
A
MN
287
C
MN
MN
1_555
A
FCD
288
D
OXT
FCD
1_555
111.8
A
GLU
269
A
OE1
GLU
272
1_555
A
MN
287
C
MN
MN
1_555
A
FCD
288
D
OXT
FCD
1_555
95.6
A
FCD
288
D
OB
FCD
1_555
A
MN
287
C
MN
MN
1_555
A
FCD
288
D
OXT
FCD
1_555
55.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_455
-y-1,x-y,z
crystal symmetry operation
-106.4120000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_445
-x+y-1,-x-1,z
crystal symmetry operation
-53.2060000000
-92.1554952675
0.0000000000
A
N
TYR
91
A
N
TYR
94
A
O
TYR
135
A
O
TYR
138
A
O
ASN
129
A
O
ASN
132
A
N
SER
107
A
N
SER
110
A
N
TYR
91
A
N
TYR
94
A
O
TYR
135
A
O
TYR
138
A
N
VAL
128
A
N
VAL
131
A
O
PHE
147
A
O
PHE
150
A
N
CYS
113
A
N
CYS
116
A
O
VAL
257
A
O
VAL
260
A
O
VAL
258
A
O
VAL
261
A
N
GLU
249
A
N
GLU
252
A
N
ASN
197
A
N
ASN
200
A
O
ASN
242
A
O
ASN
245
A
N
ILE
241
A
N
ILE
244
A
O
ALA
266
A
O
ALA
269
A
N
GLY
204
A
N
GLY
207
A
O
VAL
217
A
O
VAL
220
A
N
PHE
235
A
N
PHE
238
A
O
LEU
272
A
O
LEU
275
A
N
LEU
273
A
N
LEU
276
A
O
GLU
280
A
O
GLU
283
1
A
HOH
472
H
HOH
1
A
MET
-2
A
MET
1
1
Y
1
A
ALA
-1
A
ALA
2
1
Y
1
A
SER
0
A
SER
3
1
Y
1
A
MET
1
A
MET
4
1
Y
1
14.71
2.10
111.80
126.51
A
A
A
CG
CD
NE
ARG
ARG
ARG
4
4
4
N
1
6.72
0.50
120.30
127.02
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
4
4
4
N
1
-7.77
0.50
120.30
112.53
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
4
4
4
N
1
7.27
1.10
119.40
126.67
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
16
16
16
N
1
-9.81
0.50
120.30
110.49
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
16
16
16
N
1
3.62
0.50
120.30
123.92
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
51
51
51
N
1
-8.56
0.50
120.30
111.74
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
51
51
51
N
1
-4.27
0.50
120.30
116.03
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
55
55
55
N
1
4.91
0.50
120.30
125.21
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
55
55
55
N
1
6.42
0.90
118.30
124.72
A
A
A
CB
CG
OD1
ASP
ASP
ASP
118
118
118
N
1
-6.94
0.90
118.30
111.36
A
A
A
CB
CG
OD2
ASP
ASP
ASP
124
124
124
N
1
-6.53
0.90
118.30
111.77
A
A
A
CB
CG
OD2
ASP
ASP
ASP
126
126
126
N
1
4.53
0.50
120.30
124.83
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
162
162
162
N
1
-7.44
0.50
120.30
112.86
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
162
162
162
N
1
4.03
0.50
120.30
124.33
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
164
164
164
N
1
3.81
0.50
120.30
124.11
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
169
169
169
N
1
-4.73
0.50
120.30
115.57
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
169
169
169
N
1
7.70
1.10
119.40
127.10
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
185
185
185
N
1
-3.45
0.50
120.30
116.85
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
185
185
185
N
1
-4.29
0.50
120.30
116.01
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
185
185
185
N
1
6.44
0.50
120.30
126.74
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
200
200
200
N
1
-5.39
0.50
120.30
114.91
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
200
200
200
N
1
-4.88
0.70
120.80
115.92
A
A
A
CB
CG
CD2
PHE
PHE
PHE
211
211
211
N
1
4.68
0.70
120.80
125.48
A
A
A
CB
CG
CD1
PHE
PHE
PHE
211
211
211
N
1
A
A
CZ
NH1
ARG
ARG
4
4
0.115
0.013
1.326
1.441
N
1
A
A
CG
CD
GLU
GLU
48
48
0.128
0.015
1.515
1.643
N
1
A
A
CD
OE1
GLU
GLU
48
48
0.108
0.011
1.252
1.360
N
1
A
A
CD
OE2
GLU
GLU
48
48
0.140
0.011
1.252
1.392
N
1
A
A
CB
CG1
VAL
VAL
132
132
-0.176
0.021
1.524
1.348
N
1
A
A
CG
CD
ARG
ARG
185
185
0.169
0.025
1.515
1.684
N
1
A
A
CG
CD
ARG
ARG
262
262
-0.170
0.025
1.515
1.345
N
1
A
A
NH2
O
ARG
HOH
4
436
2.12
1_555
6_554
1
A
ASN
109
56.93
-116.18
1
A
ASP
118
-167.17
-160.38
1
A
GLN
222
-150.70
89.49
1
A
GLU
238
-156.65
56.77
1
A
THR
283
-99.73
53.48
51.12
11.941
4.22
0.000
0.000
0.000
0.000
0.000
0.000
0.961
0.955
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY
0.190
0.171
0.172
1.400
21.140
3237
63914
5.100
99.570
0.190
0.171
1.00
0.33
0.898
0.664
0.028
0.054
0.055
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.054
0.055
0.800
0.800
1.400
PDB entry 1YJ3
MAXIMUM LIKELIHOOD
MASK
1.400
21.140
249
2453
38
0
2166
0.031
0.022
2253
2.516
1.967
3082
6.447
5.000
283
38.351
23.723
94
11.502
15.000
337
22.556
15.000
15
0.160
0.200
350
0.016
0.021
1736
1.268
1.500
1411
2.083
2.000
2293
3.153
3.000
842
4.655
4.500
789
0.278
0.240
1.436
264
4424
4688
20
99.530
1.400
50.000
3IU7
64180
0.045
0.657
1
9.400
10.000
99.900
0.215
1.40
1.42
3171
0.745
8.30
100.00
0.184
1.42
1.45
3191
0.658
9.80
100.00
0.160
1.45
1.48
3201
0.573
10.20
100.00
0.149
1.48
1.51
3192
0.627
10.30
100.00
0.126
1.51
1.54
3193
0.585
10.30
100.00
0.114
1.54
1.58
3190
0.553
10.30
100.00
0.103
1.58
1.62
3207
0.555
10.30
100.00
0.092
1.62
1.66
3193
0.547
10.30
100.00
0.081
1.66
1.71
3208
0.529
10.30
100.00
0.075
1.71
1.76
3185
0.553
10.30
100.00
0.069
1.76
1.83
3197
0.639
10.30
100.00
0.067
1.83
1.90
3224
0.732
10.30
100.00
0.070
1.90
1.99
3192
0.983
10.30
100.00
0.045
1.99
2.09
3215
0.531
10.40
100.00
0.041
2.09
2.22
3216
0.578
10.30
100.00
0.060
2.22
2.39
3209
1.203
10.00
100.00
0.037
2.39
2.63
3211
0.675
10.20
100.00
0.036
2.63
3.02
3250
0.735
9.60
100.00
0.030
3.02
3.80
3250
0.732
7.60
99.70
0.024
3.80
50.00
3285
0.476
10.60
98.80
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.005
data collection
HKL-3000
data reduction
HKL-3000
data scaling
HKL-3000
M. tuberculosis methionine aminopeptidase with Mn inhibitor A02
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
THR
43
A
THR
46
HELX_P
A
VAL
68
A
VAL
71
1
1
26
A
THR
73
A
THR
76
HELX_P
A
ASN
88
A
ASN
91
1
2
16
A
GLY
96
A
GLY
99
HELX_P
A
PHE
100
A
PHE
103
5
3
5
A
ALA
153
A
ALA
156
HELX_P
A
THR
173
A
THR
176
1
4
21
A
SER
181
A
SER
184
HELX_P
A
PHE
194
A
PHE
197
1
5
14
metalc
2.157
A
ASP
131
A
OD1
ASP
134
1_555
A
MN
286
B
MN
MN
1_555
metalc
2.336
A
ASP
131
A
OD2
ASP
134
1_555
A
MN
286
B
MN
MN
1_555
metalc
2.082
A
ASP
142
A
OD2
ASP
145
1_555
A
MN
286
B
MN
MN
1_555
metalc
2.194
A
ASP
142
A
OD1
ASP
145
1_555
A
MN
287
C
MN
MN
1_555
metalc
2.181
A
HIS
205
A
NE2
HIS
208
1_555
A
MN
287
C
MN
MN
1_555
metalc
2.160
A
GLU
238
A
OE2
GLU
241
1_555
A
MN
287
C
MN
MN
1_555
metalc
2.213
A
GLU
269
A
OE2
GLU
272
1_555
A
MN
286
B
MN
MN
1_555
metalc
2.157
A
GLU
269
A
OE1
GLU
272
1_555
A
MN
287
C
MN
MN
1_555
metalc
2.135
A
MN
286
B
MN
MN
1_555
A
FCD
288
D
OXT
FCD
1_555
metalc
2.272
A
MN
286
B
MN
MN
1_555
A
HOH
539
H
O
HOH
1_555
metalc
2.406
A
MN
287
C
MN
MN
1_555
A
FCD
288
D
OB
FCD
1_555
metalc
2.215
A
MN
287
C
MN
MN
1_555
A
FCD
288
D
OXT
FCD
1_555
HYDROLASE
enzyme-inhibitor complex, Aminopeptidase, Cobalt, Hydrolase, Metal-binding, Protease
AMPM_MYCTU
UNP
1
2
P0A5J2
PSRTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIA
HEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVD
RTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMI
NLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILTCL
2
285
3IU7
2
285
P0A5J2
A
1
5
288
1
expression tag
MET
-2
3IU7
A
P0A5J2
UNP
1
1
expression tag
ALA
-1
3IU7
A
P0A5J2
UNP
2
1
expression tag
SER
0
3IU7
A
P0A5J2
UNP
3
1
expression tag
MET
1
3IU7
A
P0A5J2
UNP
4
3
3
3
3
2
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
91
A
TYR
94
A
PRO
92
A
PRO
95
A
ILE
127
A
ILE
130
A
ILE
136
A
ILE
139
A
CYS
105
A
CYS
108
A
LEU
108
A
LEU
111
A
TYR
91
A
TYR
94
A
PRO
92
A
PRO
95
A
ILE
127
A
ILE
130
A
ILE
136
A
ILE
139
A
VAL
139
A
VAL
142
A
PRO
148
A
PRO
151
A
VAL
111
A
VAL
114
A
CYS
113
A
CYS
116
A
VAL
257
A
VAL
260
A
THR
259
A
THR
262
A
TYR
248
A
TYR
251
A
ILE
250
A
ILE
253
A
ASN
197
A
ASN
200
A
VAL
198
A
VAL
201
A
MET
240
A
MET
243
A
ASN
242
A
ASN
245
A
THR
265
A
THR
268
A
GLN
267
A
GLN
270
A
GLY
204
A
GLY
207
A
HIS
205
A
HIS
208
A
VAL
216
A
VAL
219
A
VAL
217
A
VAL
220
A
THR
234
A
THR
237
A
ILE
237
A
ILE
240
A
HIS
270
A
HIS
273
A
VAL
274
A
VAL
277
A
VAL
279
A
VAL
282
A
ILE
281
A
ILE
284
BINDING SITE FOR RESIDUE MN A 286
A
MN
286
Software
6
BINDING SITE FOR RESIDUE MN A 287
A
MN
287
Software
6
BINDING SITE FOR RESIDUE FCD A 288
A
FCD
288
Software
13
BINDING SITE FOR RESIDUE FCD A 289
A
FCD
289
Software
7
BINDING SITE FOR RESIDUE SO4 A 290
A
SO4
290
Software
6
BINDING SITE FOR RESIDUE CL A 291
A
CL
291
Software
1
A
ASP
131
A
ASP
134
6
1_555
A
ASP
142
A
ASP
145
6
1_555
A
GLU
269
A
GLU
272
6
1_555
A
MN
287
C
MN
6
1_555
A
FCD
288
D
FCD
6
1_555
A
HOH
539
H
HOH
6
1_555
A
ASP
142
A
ASP
145
6
1_555
A
HIS
205
A
HIS
208
6
1_555
A
GLU
238
A
GLU
241
6
1_555
A
GLU
269
A
GLU
272
6
1_555
A
MN
286
B
MN
6
1_555
A
FCD
288
D
FCD
6
1_555
A
TYR
97
A
TYR
100
13
1_555
A
HIS
114
A
HIS
117
13
1_555
A
ASP
131
A
ASP
134
13
1_555
A
ASP
142
A
ASP
145
13
1_555
A
HIS
205
A
HIS
208
13
1_555
A
HIS
212
A
HIS
215
13
1_555
A
GLU
238
A
GLU
241
13
1_555
A
TRP
255
A
TRP
258
13
1_555
A
GLU
269
A
GLU
272
13
1_555
A
MN
286
B
MN
13
1_555
A
MN
287
C
MN
13
1_555
A
HOH
503
H
HOH
13
1_555
A
HOH
539
H
HOH
13
1_555
A
ASN
144
A
ASN
147
7
1_555
A
ARG
164
A
ARG
167
7
1_555
A
THR
167
A
THR
170
7
1_555
A
MET
168
A
MET
171
7
1_555
A
GLU
269
A
GLU
272
7
1_555
A
HIS
270
A
HIS
273
7
1_555
A
HOH
446
H
HOH
7
1_555
A
ASN
20
A
ASN
23
6
2_455
A
ARG
200
A
ARG
203
6
1_555
A
HOH
307
H
HOH
6
2_455
A
HOH
343
H
HOH
6
1_555
A
HOH
390
H
HOH
6
1_555
A
HOH
500
H
HOH
6
1_555
A
ARG
193
A
ARG
196
1
1_555
173
P 63