0.009928
0.005732
0.000000
0.000000
0.011463
0.000000
0.000000
0.000000
0.018462
0.00000
0.00000
0.00000
Nakasako, M.
Obata, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
9
90.00
90.00
120.00
100.730
100.730
54.165
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
S
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
R
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
N
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
49
1963
1969
10.1021/bi9015605
20136121
Structural Basis for Inverting the Enantioselectivity of Arylmalonate Decarboxylase Revealed by the Structural Analysis of the Gly74Cys/Cys188Ser Mutant in the Liganded Form
2010
DK
Acta Crystallogr.,Sect.F
1744-3091
64
610
613
10.1107/S1744309108014723
18607088
Crystallization and preliminary X-ray diffraction experiments of arylmalonate decarboxylase from Alcaligenes bronchisepticus
2008
10.2210/pdb3ixm/pdb
pdb_00003ixm
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirror
CCD
2008-04-22
MARMOSAIC 225 mm CCD
Si
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
BL26B1
SPring-8
1.0000
SYNCHROTRON
SPRING-8 BEAMLINE BL26B1
24801.449
Arylmalonate decarboxylase
4.1.1.76
G74C
1
man
polymer
96.063
SULFATE ION
2
syn
non-polymer
18.015
water
161
nat
water
AMDase
no
no
MQQASTPTIGMIVPPAAGLVPADGARLYPDLPFIASGLGLGSVTPEGYDAVIESVVDHARRLQKQGAAVVSLMCTSLSFY
RGAAFNAALTVAMREATGLPCTTMSTAVLNGLRALGVRRVALATAYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMA
RVDTATLVDLCVRAFEAAPDSDGILLSCGGLLTLDAIPEVERRLGVPVVSSSPAGFWDAVRLAGGGAKARPGYGRLFDES
MQQASTPTIGMIVPPAAGLVPADGARLYPDLPFIASGLGLGSVTPEGYDAVIESVVDHARRLQKQGAAVVSLMCTSLSFY
RGAAFNAALTVAMREATGLPCTTMSTAVLNGLRALGVRRVALATAYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMA
RVDTATLVDLCVRAFEAAPDSDGILLSCGGLLTLDAIPEVERRLGVPVVSSSPAGFWDAVRLAGGGAKARPGYGRLFDES
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Alcaligenes bronchisepticus
KU1201
sample
518
Bordetella bronchiseptica
562
Escherichia coli
DH5alpha-MCR
PLASMID
pAMD101
1
2.13
42.32
VAPOR DIFFUSION, HANGING DROP
6.2
1.2M ammonium sulfate, 15%(w/v) glycerol, 0.1M HEPES, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
1
0
2010-02-23
1
1
2011-07-13
1
2
2021-11-10
1
3
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Gly74Cys/Cys188Ser mutant in the liganded form
wild form protein without ligand
unligand form protein from Bordatella bronchiseptica
B.subtilis glutamate racemase (RacE) with D-Glu
Pyrococcus horikoshii OT3 aspartate racemase complex with citric acid
RCSB
Y
PDBJ
2009-09-04
REL
REL
SO4
SULFATE ION
HOH
water
3DTV
PDB ENTRY 3DTV
PDB
experimental model
SO4
6001
2
SO4
SO4
6001
A
SO4
6002
2
SO4
SO4
6002
A
HOH
1001
3
HOH
HOH
1001
A
HOH
1002
3
HOH
HOH
1002
A
HOH
1003
3
HOH
HOH
1003
A
HOH
1004
3
HOH
HOH
1004
A
HOH
1005
3
HOH
HOH
1005
A
HOH
1006
3
HOH
HOH
1006
A
HOH
1007
3
HOH
HOH
1007
A
HOH
1008
3
HOH
HOH
1008
A
HOH
1009
3
HOH
HOH
1009
A
HOH
1010
3
HOH
HOH
1010
A
HOH
1011
3
HOH
HOH
1011
A
HOH
1012
3
HOH
HOH
1012
A
HOH
1013
3
HOH
HOH
1013
A
HOH
1014
3
HOH
HOH
1014
A
HOH
1016
3
HOH
HOH
1016
A
HOH
1017
3
HOH
HOH
1017
A
HOH
1018
3
HOH
HOH
1018
A
HOH
1019
3
HOH
HOH
1019
A
HOH
1020
3
HOH
HOH
1020
A
HOH
1021
3
HOH
HOH
1021
A
HOH
1022
3
HOH
HOH
1022
A
HOH
1023
3
HOH
HOH
1023
A
HOH
1024
3
HOH
HOH
1024
A
HOH
1025
3
HOH
HOH
1025
A
HOH
1026
3
HOH
HOH
1026
A
HOH
1027
3
HOH
HOH
1027
A
HOH
1028
3
HOH
HOH
1028
A
HOH
1029
3
HOH
HOH
1029
A
HOH
1030
3
HOH
HOH
1030
A
HOH
1031
3
HOH
HOH
1031
A
HOH
1033
3
HOH
HOH
1033
A
HOH
1034
3
HOH
HOH
1034
A
HOH
1040
3
HOH
HOH
1040
A
HOH
1041
3
HOH
HOH
1041
A
HOH
1045
3
HOH
HOH
1045
A
HOH
1047
3
HOH
HOH
1047
A
HOH
1048
3
HOH
HOH
1048
A
HOH
1049
3
HOH
HOH
1049
A
HOH
1050
3
HOH
HOH
1050
A
HOH
1051
3
HOH
HOH
1051
A
HOH
1052
3
HOH
HOH
1052
A
HOH
1053
3
HOH
HOH
1053
A
HOH
1054
3
HOH
HOH
1054
A
HOH
1055
3
HOH
HOH
1055
A
HOH
1056
3
HOH
HOH
1056
A
HOH
1057
3
HOH
HOH
1057
A
HOH
1058
3
HOH
HOH
1058
A
HOH
1059
3
HOH
HOH
1059
A
HOH
1060
3
HOH
HOH
1060
A
HOH
1061
3
HOH
HOH
1061
A
HOH
1062
3
HOH
HOH
1062
A
HOH
1063
3
HOH
HOH
1063
A
HOH
1064
3
HOH
HOH
1064
A
HOH
1065
3
HOH
HOH
1065
A
HOH
1066
3
HOH
HOH
1066
A
HOH
1067
3
HOH
HOH
1067
A
HOH
1068
3
HOH
HOH
1068
A
HOH
1069
3
HOH
HOH
1069
A
HOH
1070
3
HOH
HOH
1070
A
HOH
1071
3
HOH
HOH
1071
A
HOH
1072
3
HOH
HOH
1072
A
HOH
1073
3
HOH
HOH
1073
A
HOH
1074
3
HOH
HOH
1074
A
HOH
1075
3
HOH
HOH
1075
A
HOH
1076
3
HOH
HOH
1076
A
HOH
1077
3
HOH
HOH
1077
A
HOH
1078
3
HOH
HOH
1078
A
HOH
1079
3
HOH
HOH
1079
A
HOH
1080
3
HOH
HOH
1080
A
HOH
1084
3
HOH
HOH
1084
A
HOH
1085
3
HOH
HOH
1085
A
HOH
1086
3
HOH
HOH
1086
A
HOH
1087
3
HOH
HOH
1087
A
HOH
1088
3
HOH
HOH
1088
A
HOH
1091
3
HOH
HOH
1091
A
HOH
1092
3
HOH
HOH
1092
A
HOH
1093
3
HOH
HOH
1093
A
HOH
1094
3
HOH
HOH
1094
A
HOH
1095
3
HOH
HOH
1095
A
HOH
1096
3
HOH
HOH
1096
A
HOH
1097
3
HOH
HOH
1097
A
HOH
1098
3
HOH
HOH
1098
A
HOH
1099
3
HOH
HOH
1099
A
HOH
1100
3
HOH
HOH
1100
A
HOH
1101
3
HOH
HOH
1101
A
HOH
1102
3
HOH
HOH
1102
A
HOH
1103
3
HOH
HOH
1103
A
HOH
1104
3
HOH
HOH
1104
A
HOH
1107
3
HOH
HOH
1107
A
HOH
1108
3
HOH
HOH
1108
A
HOH
1111
3
HOH
HOH
1111
A
HOH
1113
3
HOH
HOH
1113
A
HOH
1114
3
HOH
HOH
1114
A
HOH
1115
3
HOH
HOH
1115
A
HOH
1116
3
HOH
HOH
1116
A
HOH
1117
3
HOH
HOH
1117
A
HOH
1118
3
HOH
HOH
1118
A
HOH
1119
3
HOH
HOH
1119
A
HOH
1123
3
HOH
HOH
1123
A
HOH
1124
3
HOH
HOH
1124
A
HOH
1127
3
HOH
HOH
1127
A
HOH
1128
3
HOH
HOH
1128
A
HOH
1129
3
HOH
HOH
1129
A
HOH
1130
3
HOH
HOH
1130
A
HOH
1131
3
HOH
HOH
1131
A
HOH
1132
3
HOH
HOH
1132
A
HOH
1133
3
HOH
HOH
1133
A
HOH
1134
3
HOH
HOH
1134
A
HOH
1135
3
HOH
HOH
1135
A
HOH
1136
3
HOH
HOH
1136
A
HOH
1137
3
HOH
HOH
1137
A
HOH
1138
3
HOH
HOH
1138
A
HOH
1139
3
HOH
HOH
1139
A
HOH
1140
3
HOH
HOH
1140
A
HOH
1141
3
HOH
HOH
1141
A
HOH
1142
3
HOH
HOH
1142
A
HOH
1143
3
HOH
HOH
1143
A
HOH
1144
3
HOH
HOH
1144
A
HOH
1145
3
HOH
HOH
1145
A
HOH
1148
3
HOH
HOH
1148
A
HOH
1149
3
HOH
HOH
1149
A
HOH
1150
3
HOH
HOH
1150
A
HOH
1152
3
HOH
HOH
1152
A
HOH
1153
3
HOH
HOH
1153
A
HOH
1154
3
HOH
HOH
1154
A
HOH
1156
3
HOH
HOH
1156
A
HOH
1158
3
HOH
HOH
1158
A
HOH
1159
3
HOH
HOH
1159
A
HOH
1160
3
HOH
HOH
1160
A
HOH
1162
3
HOH
HOH
1162
A
HOH
1163
3
HOH
HOH
1163
A
HOH
1164
3
HOH
HOH
1164
A
HOH
1165
3
HOH
HOH
1165
A
HOH
1166
3
HOH
HOH
1166
A
HOH
1167
3
HOH
HOH
1167
A
HOH
1168
3
HOH
HOH
1168
A
HOH
1169
3
HOH
HOH
1169
A
HOH
1170
3
HOH
HOH
1170
A
HOH
1171
3
HOH
HOH
1171
A
HOH
1173
3
HOH
HOH
1173
A
HOH
1174
3
HOH
HOH
1174
A
HOH
1175
3
HOH
HOH
1175
A
HOH
1176
3
HOH
HOH
1176
A
HOH
1177
3
HOH
HOH
1177
A
HOH
1178
3
HOH
HOH
1178
A
HOH
1179
3
HOH
HOH
1179
A
HOH
1180
3
HOH
HOH
1180
A
HOH
1181
3
HOH
HOH
1181
A
HOH
1182
3
HOH
HOH
1182
A
HOH
1183
3
HOH
HOH
1183
A
HOH
1184
3
HOH
HOH
1184
A
HOH
1185
3
HOH
HOH
1185
A
HOH
1186
3
HOH
HOH
1186
A
HOH
1187
3
HOH
HOH
1187
A
HOH
1189
3
HOH
HOH
1189
A
HOH
1191
3
HOH
HOH
1191
A
HOH
1192
3
HOH
HOH
1192
A
HOH
1193
3
HOH
HOH
1193
A
HOH
1194
3
HOH
HOH
1194
A
HOH
1196
3
HOH
HOH
1196
A
HOH
1197
3
HOH
HOH
1197
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
PRO
7
n
7
PRO
7
A
THR
8
n
8
THR
8
A
ILE
9
n
9
ILE
9
A
GLY
10
n
10
GLY
10
A
MET
11
n
11
MET
11
A
ILE
12
n
12
ILE
12
A
VAL
13
n
13
VAL
13
A
PRO
14
n
14
PRO
14
A
PRO
15
n
15
PRO
15
A
ALA
16
n
16
ALA
16
A
ALA
17
n
17
ALA
17
A
GLY
18
n
18
GLY
18
A
LEU
19
n
19
LEU
19
A
VAL
20
n
20
VAL
20
A
PRO
21
n
21
PRO
21
A
ALA
22
n
22
ALA
22
A
ASP
23
n
23
ASP
23
A
GLY
24
n
24
GLY
24
A
ALA
25
n
25
ALA
25
A
ARG
26
n
26
ARG
26
A
LEU
27
n
27
LEU
27
A
TYR
28
n
28
TYR
28
A
PRO
29
n
29
PRO
29
A
ASP
30
n
30
ASP
30
A
LEU
31
n
31
LEU
31
A
PRO
32
n
32
PRO
32
A
PHE
33
n
33
PHE
33
A
ILE
34
n
34
ILE
34
A
ALA
35
n
35
ALA
35
A
SER
36
n
36
SER
36
A
GLY
37
n
37
GLY
37
A
LEU
38
n
38
LEU
38
A
GLY
39
n
39
GLY
39
A
LEU
40
n
40
LEU
40
A
GLY
41
n
41
GLY
41
A
SER
42
n
42
SER
42
A
VAL
43
n
43
VAL
43
A
THR
44
n
44
THR
44
A
PRO
45
n
45
PRO
45
A
GLU
46
n
46
GLU
46
A
GLY
47
n
47
GLY
47
A
TYR
48
n
48
TYR
48
A
ASP
49
n
49
ASP
49
A
ALA
50
n
50
ALA
50
A
VAL
51
n
51
VAL
51
A
ILE
52
n
52
ILE
52
A
GLU
53
n
53
GLU
53
A
SER
54
n
54
SER
54
A
VAL
55
n
55
VAL
55
A
VAL
56
n
56
VAL
56
A
ASP
57
n
57
ASP
57
A
HIS
58
n
58
HIS
58
A
ALA
59
n
59
ALA
59
A
ARG
60
n
60
ARG
60
A
ARG
61
n
61
ARG
61
A
LEU
62
n
62
LEU
62
A
GLN
63
n
63
GLN
63
A
LYS
64
n
64
LYS
64
A
GLN
65
n
65
GLN
65
A
GLY
66
n
66
GLY
66
A
ALA
67
n
67
ALA
67
A
ALA
68
n
68
ALA
68
A
VAL
69
n
69
VAL
69
A
VAL
70
n
70
VAL
70
A
SER
71
n
71
SER
71
A
LEU
72
n
72
LEU
72
A
MET
73
n
73
MET
73
A
CYS
74
n
74
CYS
74
A
THR
75
n
75
THR
75
A
SER
76
n
76
SER
76
A
LEU
77
n
77
LEU
77
A
SER
78
n
78
SER
78
A
PHE
79
n
79
PHE
79
A
TYR
80
n
80
TYR
80
A
ARG
81
n
81
ARG
81
A
GLY
82
n
82
GLY
82
A
ALA
83
n
83
ALA
83
A
ALA
84
n
84
ALA
84
A
PHE
85
n
85
PHE
85
A
ASN
86
n
86
ASN
86
A
ALA
87
n
87
ALA
87
A
ALA
88
n
88
ALA
88
A
LEU
89
n
89
LEU
89
A
THR
90
n
90
THR
90
A
VAL
91
n
91
VAL
91
A
ALA
92
n
92
ALA
92
A
MET
93
n
93
MET
93
A
ARG
94
n
94
ARG
94
A
GLU
95
n
95
GLU
95
A
ALA
96
n
96
ALA
96
A
THR
97
n
97
THR
97
A
GLY
98
n
98
GLY
98
A
LEU
99
n
99
LEU
99
A
PRO
100
n
100
PRO
100
A
CYS
101
n
101
CYS
101
A
THR
102
n
102
THR
102
A
THR
103
n
103
THR
103
A
MET
104
n
104
MET
104
A
SER
105
n
105
SER
105
A
THR
106
n
106
THR
106
A
ALA
107
n
107
ALA
107
A
VAL
108
n
108
VAL
108
A
LEU
109
n
109
LEU
109
A
ASN
110
n
110
ASN
110
A
GLY
111
n
111
GLY
111
A
LEU
112
n
112
LEU
112
A
ARG
113
n
113
ARG
113
A
ALA
114
n
114
ALA
114
A
LEU
115
n
115
LEU
115
A
GLY
116
n
116
GLY
116
A
VAL
117
n
117
VAL
117
A
ARG
118
n
118
ARG
118
A
ARG
119
n
119
ARG
119
A
VAL
120
n
120
VAL
120
A
ALA
121
n
121
ALA
121
A
LEU
122
n
122
LEU
122
A
ALA
123
n
123
ALA
123
A
THR
124
n
124
THR
124
A
ALA
125
n
125
ALA
125
A
TYR
126
n
126
TYR
126
A
ILE
127
n
127
ILE
127
A
ASP
128
n
128
ASP
128
A
ASP
129
n
129
ASP
129
A
VAL
130
n
130
VAL
130
A
ASN
131
n
131
ASN
131
A
GLU
132
n
132
GLU
132
A
ARG
133
n
133
ARG
133
A
LEU
134
n
134
LEU
134
A
ALA
135
n
135
ALA
135
A
ALA
136
n
136
ALA
136
A
PHE
137
n
137
PHE
137
A
LEU
138
n
138
LEU
138
A
ALA
139
n
139
ALA
139
A
GLU
140
n
140
GLU
140
A
GLU
141
n
141
GLU
141
A
SER
142
n
142
SER
142
A
LEU
143
n
143
LEU
143
A
VAL
144
n
144
VAL
144
A
PRO
145
n
145
PRO
145
A
THR
146
n
146
THR
146
A
GLY
147
n
147
GLY
147
A
CYS
148
n
148
CYS
148
A
ARG
149
n
149
ARG
149
A
SER
150
n
150
SER
150
A
LEU
151
n
151
LEU
151
A
GLY
152
n
152
GLY
152
A
ILE
153
n
153
ILE
153
A
THR
154
n
154
THR
154
A
GLY
155
n
155
GLY
155
A
VAL
156
n
156
VAL
156
A
GLU
157
n
157
GLU
157
A
ALA
158
n
158
ALA
158
A
MET
159
n
159
MET
159
A
ALA
160
n
160
ALA
160
A
ARG
161
n
161
ARG
161
A
VAL
162
n
162
VAL
162
A
ASP
163
n
163
ASP
163
A
THR
164
n
164
THR
164
A
ALA
165
n
165
ALA
165
A
THR
166
n
166
THR
166
A
LEU
167
n
167
LEU
167
A
VAL
168
n
168
VAL
168
A
ASP
169
n
169
ASP
169
A
LEU
170
n
170
LEU
170
A
CYS
171
n
171
CYS
171
A
VAL
172
n
172
VAL
172
A
ARG
173
n
173
ARG
173
A
ALA
174
n
174
ALA
174
A
PHE
175
n
175
PHE
175
A
GLU
176
n
176
GLU
176
A
ALA
177
n
177
ALA
177
A
ALA
178
n
178
ALA
178
A
PRO
179
n
179
PRO
179
A
ASP
180
n
180
ASP
180
A
SER
181
n
181
SER
181
A
ASP
182
n
182
ASP
182
A
GLY
183
n
183
GLY
183
A
ILE
184
n
184
ILE
184
A
LEU
185
n
185
LEU
185
A
LEU
186
n
186
LEU
186
A
SER
187
n
187
SER
187
A
CYS
188
n
188
CYS
188
A
GLY
189
n
189
GLY
189
A
GLY
190
n
190
GLY
190
A
LEU
191
n
191
LEU
191
A
LEU
192
n
192
LEU
192
A
THR
193
n
193
THR
193
A
LEU
194
n
194
LEU
194
A
ASP
195
n
195
ASP
195
A
ALA
196
n
196
ALA
196
A
ILE
197
n
197
ILE
197
A
PRO
198
n
198
PRO
198
A
GLU
199
n
199
GLU
199
A
VAL
200
n
200
VAL
200
A
GLU
201
n
201
GLU
201
A
ARG
202
n
202
ARG
202
A
ARG
203
n
203
ARG
203
A
LEU
204
n
204
LEU
204
A
GLY
205
n
205
GLY
205
A
VAL
206
n
206
VAL
206
A
PRO
207
n
207
PRO
207
A
VAL
208
n
208
VAL
208
A
VAL
209
n
209
VAL
209
A
SER
210
n
210
SER
210
A
SER
211
n
211
SER
211
A
SER
212
n
212
SER
212
A
PRO
213
n
213
PRO
213
A
ALA
214
n
214
ALA
214
A
GLY
215
n
215
GLY
215
A
PHE
216
n
216
PHE
216
A
TRP
217
n
217
TRP
217
A
ASP
218
n
218
ASP
218
A
ALA
219
n
219
ALA
219
A
VAL
220
n
220
VAL
220
A
ARG
221
n
221
ARG
221
A
LEU
222
n
222
LEU
222
A
ALA
223
n
223
ALA
223
A
GLY
224
n
224
GLY
224
A
GLY
225
n
225
GLY
225
A
GLY
226
n
226
GLY
226
A
ALA
227
n
227
ALA
227
A
LYS
228
n
228
LYS
228
A
ALA
229
n
229
ALA
229
A
ARG
230
n
230
ARG
230
A
PRO
231
n
231
PRO
231
A
GLY
232
n
232
GLY
232
A
TYR
233
n
233
TYR
233
A
GLY
234
n
234
GLY
234
A
ARG
235
n
235
ARG
235
A
LEU
236
n
236
LEU
236
A
PHE
237
n
237
PHE
237
A
ASP
238
n
238
ASP
238
A
GLU
239
n
239
GLU
239
A
n
240
240
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
34
A
O
ILE
34
A
N
MET
11
A
N
MET
11
A
N
ILE
12
A
N
ILE
12
A
O
SER
71
A
O
SER
71
A
N
LEU
72
A
N
LEU
72
A
O
THR
102
A
O
THR
102
A
O
GLY
147
A
O
GLY
147
A
N
LEU
122
A
N
LEU
122
A
N
ALA
121
A
N
ALA
121
A
O
LEU
185
A
O
LEU
185
A
N
LEU
186
A
N
LEU
186
A
O
VAL
209
A
O
VAL
209
1
A
NE
ARG
26
A
NE
ARG
26
1
Y
1
A
CZ
ARG
26
A
CZ
ARG
26
1
Y
1
A
NH1
ARG
26
A
NH1
ARG
26
1
Y
1
A
NH2
ARG
26
A
NH2
ARG
26
1
Y
1
A
NE
ARG
230
A
NE
ARG
230
1
Y
1
A
CZ
ARG
230
A
CZ
ARG
230
1
Y
1
A
NH1
ARG
230
A
NH1
ARG
230
1
Y
1
A
NH2
ARG
230
A
NH2
ARG
230
1
Y
1
A
CG
GLU
239
A
CG
GLU
239
1
Y
1
A
CD
GLU
239
A
CD
GLU
239
1
Y
1
A
OE1
GLU
239
A
OE1
GLU
239
1
Y
1
A
OE2
GLU
239
A
OE2
GLU
239
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
GLN
2
A
GLN
2
1
Y
1
A
GLN
3
A
GLN
3
1
Y
1
A
ALA
4
A
ALA
4
1
Y
1
A
SER
5
A
SER
5
1
Y
1
A
THR
6
A
THR
6
1
Y
1
A
SER
240
A
SER
240
1
Y
23.296
-0.50
-0.25
0.00
-0.50
0.00
0.75
0.952
0.916
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.24462
0.18002
0.18311
1.90
20.00
804
15236
5.0
99.78
3.484
0.106
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.170
0.165
0.80
0.80
1.20
PDB ENTRY 3DTV
MAXIMUM LIKELIHOOD
MASK
1.90
20.00
161
1844
10
0
1673
0.017
0.022
1717
1.718
1.997
2341
6.347
5.000
232
29.095
21.864
59
16.501
15.000
256
20.903
15.000
17
0.121
0.200
281
0.006
0.020
1282
0.224
0.200
834
0.308
0.200
1199
0.200
0.200
117
0.239
0.200
63
0.289
0.200
29
1.097
1.500
1175
1.824
2.000
1836
2.958
3.000
594
4.739
4.500
505
0.314
0.215
1.951
65
1109
20
100.00
1.9
100
3IXM
16054
1
0.053
1
174138
94.2
0.129
1.90
1.93
100
phasing
AMoRE
refinement
REFMAC
5.2.0019
data reduction
HKL-2000
data scaling
HKL-2000
N
Structure of the Gly74Cys mutant of arylmalonate decarboxylase in the sulfate ion associated form
1
N
N
2
N
N
2
N
N
3
N
N
A
GLY
24
A
GLY
24
HELX_P
A
TYR
28
A
TYR
28
5
1
5
A
GLY
47
A
GLY
47
HELX_P
A
GLN
65
A
GLN
65
1
2
19
A
CYS
74
A
CYS
74
HELX_P
A
TYR
80
A
TYR
80
1
3
7
A
GLY
82
A
GLY
82
HELX_P
A
GLY
98
A
GLY
98
1
4
17
A
MET
104
A
MET
104
HELX_P
A
LEU
115
A
LEU
115
1
5
12
A
ILE
127
A
ILE
127
HELX_P
A
GLU
141
A
GLU
141
1
6
15
A
GLY
155
A
GLY
155
HELX_P
A
ARG
161
A
ARG
161
1
7
7
A
ASP
163
A
ASP
163
HELX_P
A
ALA
178
A
ALA
178
1
8
16
A
ASP
195
A
ASP
195
HELX_P
A
GLY
205
A
GLY
205
1
9
11
A
SER
211
A
SER
211
HELX_P
A
ALA
223
A
ALA
223
1
10
13
A
GLY
234
A
GLY
234
HELX_P
A
GLU
239
A
GLU
239
1
11
6
LYASE
enantioselective racemase, Decarboxylase, Lyase
AMDA_BORBR
UNP
1
1
Q05115
MQQASTPTIGMIVPPAAGLVPADGARLYPDLPFIASGLGLGSVTPEGYDAVIESVVDHARRLQKQGAAVVSLMGTSLSFY
RGAAFNAALTVAMREATGLPCTTMSTAVLNGLRALGVRRVALATAYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMA
RVDTATLVDLCVRAFEAAPDSDGILLSCGGLLTLDAIPEVERRLGVPVVSSSPAGFWDAVRLAGGGAKARPGYGRLFDES
1
240
3IXM
1
240
Q05115
A
1
1
240
1
GLY
engineered mutation
CYS
74
3IXM
A
Q05115
UNP
74
74
4
4
parallel
parallel
parallel
parallel
parallel
parallel
A
PHE
33
A
PHE
33
A
GLY
37
A
GLY
37
A
ILE
9
A
ILE
9
A
VAL
13
A
VAL
13
A
VAL
69
A
VAL
69
A
LEU
72
A
LEU
72
A
CYS
101
A
CYS
101
A
THR
103
A
THR
103
A
VAL
144
A
VAL
144
A
SER
150
A
SER
150
A
ARG
119
A
ARG
119
A
THR
124
A
THR
124
A
GLY
183
A
GLY
183
A
SER
187
A
SER
187
A
VAL
208
A
VAL
208
A
SER
210
A
SER
210
BINDING SITE FOR RESIDUE SO4 A 6001
A
SO4
6001
Software
5
BINDING SITE FOR RESIDUE SO4 A 6002
A
SO4
6002
Software
4
A
THR
75
A
THR
75
5
1_555
A
SER
76
A
SER
76
5
1_555
A
TYR
126
A
TYR
126
5
1_555
A
GLY
189
A
GLY
189
5
1_555
A
HOH
1115
D
HOH
5
1_555
A
SER
36
A
SER
36
4
1_555
A
ARG
61
A
ARG
61
4
1_555
A
GLN
65
A
GLN
65
4
1_555
A
HOH
1012
D
HOH
4
1_555
146
H 3