1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Coudray, N. Valvo, S. Hu, M. Lasala, R. Kim, C. Vink, M. Zhou, M. Provasi, D. Filizola, M. Tao, J. Fang, J. Penczek, P.A. Ubarretxena-Belandia, I. Stokes, D.L. Transcontinental EM Initiative for Membrane Protein Structure (TEMIMPS) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N S N 234 N C N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 R C N 306 N O N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N N Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C N 356 N O N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C N 374 N C N 375 N C N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing Y 343 N doub Y 344 N sing Y 345 N sing N 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 110 2140 2145 10.1073/pnas.1215455110 23341604 Inward-facing conformation of the zinc transporter YiiP revealed by cryoelectron microscopy. 2013 10.2210/pdb3j1z/pdb pdb_00003j1z 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M x-ray 1 1.0 METHOD--MDFF DETAILS--An initial homology model of YiiP from S. oneidensis was built with MODELLER 9v7 using the X-ray crystal structure of YiiP from E. coli (PDB entry 3H90) as a template. This model included 9 residues at the N-terminus and 4 residues at the C-terminus that were not present in the X-ray structure. Initial configurations were obtained by manually placing the symmetry axis of the homology model onto the symmetry axis of the electron density map and aligning the protein C-terminal domains to the corresponding densities. In the first step of the MDFF fitting, harmonic potentials were applied to (a) the four-helix bundle formed by helices M1, M2, M4, and M5 (residues 12-32, 42-65, 119-142, and 147-165, respectively), (b) the M3 and M6 helices at the dimeric interface (residues 78-108 and 179-211, respectively), and (c) the C-terminal intracellular domain (residues 212-297). FLEXIBLE FIT REAL 3H90 1 3H90 PDB experimental model 2.735 CRYSTAL CELL PARAMETERS WERE A=57.5, B=34.0, C=100.0, ALPHA=90, BETA=90, GAMMA=85.3. 3J1Z IHRSR 13 HELICAL 20mM TES, 5mM MgCl2, 100mM NaCl, 5mM NaN3 20mM TES, 5mM MgCl2, 100mM NaCl, 5mM NaN3 7 Corrected throughout the reconstruction cycle YiiP from Shewanella oneidensis in DOPG lipids 0 COMPLEX 2D ARRAY 1 1 HELICAL 56.4 17.1 D3 10 Kodak SO163 film GENERIC FILM 3J1Z 19 200 51190 2009-02-10 FIELD EMISSION GUN FLOOD BEAM FEI TECNAI F20 BRIGHT FIELD 2.1 3000 1600 50000 1 100 holey carbon grid RECONSTRUCTION 1 EMIP RECONSTRUCTION 1 SPARX 0.5 NO NO NO YES ETHANE Blot for 2-5 seconds before plunging into liquid ethane (Gatan cryoplunger) 3J1Z GATAN CRYOPLUNGE 3 Blot for 2-5 seconds before plunging 100 33866.660 Cation efflux family protein 2 man polymer YiiP, Ferrous-iron efflux pump (Fief) no no MTQTSQYDFWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKA EPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDL FLNAAVLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQ AGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQVEPTTQHHHHHHHHHH MTQTSQYDFWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKA EPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDL FLNAAVLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQ AGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQVEPTTQHHHHHHHHHH P,Q TEMIMPS-GO.15206 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n MR-1 sample SO_4475 211586 Shewanella oneidensis 469008 Escherichia coli BL21(DE3) pET plasmid Transcontinental EM Initiative for Membrane Protein Structure TEMIMPS PSI:Biology em_single_particle_entity em_software chem_comp_atom chem_comp_bond database_2 em_3d_fitting_list pdbx_initial_refinement_model pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Structure summary Database references Database references Author supporting evidence Data collection Data collection Database references Derived calculations Refinement description 1 0 2012-10-10 1 1 2013-01-09 1 2 2013-02-06 1 3 2013-02-13 1 4 2018-07-18 1 5 2024-02-21 _em_software.image_processing_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.source_name _em_3d_fitting_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.type _struct_ref_seq_dif.details Y RCSB Y RCSB 2012-07-24 REL 3 no 1 18 17.1 56.4 3H90 PDB experimental model MET 1 n 1 MET 1 P THR 2 n 2 THR 2 P GLN 3 n 3 GLN 3 P THR 4 n 4 THR 4 P SER 5 n 5 SER 5 P GLN 6 n 6 GLN 6 P TYR 7 n 7 TYR 7 P ASP 8 n 8 ASP 8 P PHE 9 n 9 PHE 9 P TRP 10 n 10 TRP 10 P VAL 11 n 11 VAL 11 P LYS 12 n 12 LYS 12 P LEU 13 n 13 LEU 13 P ALA 14 n 14 ALA 14 P SER 15 n 15 SER 15 P ARG 16 n 16 ARG 16 P ALA 17 n 17 ALA 17 P SER 18 n 18 SER 18 P VAL 19 n 19 VAL 19 P ALA 20 n 20 ALA 20 P THR 21 n 21 THR 21 P ALA 22 n 22 ALA 22 P LEU 23 n 23 LEU 23 P THR 24 n 24 THR 24 P LEU 25 n 25 LEU 25 P ILE 26 n 26 ILE 26 P THR 27 n 27 THR 27 P ILE 28 n 28 ILE 28 P LYS 29 n 29 LYS 29 P LEU 30 n 30 LEU 30 P LEU 31 n 31 LEU 31 P ALA 32 n 32 ALA 32 P TRP 33 n 33 TRP 33 P LEU 34 n 34 LEU 34 P TYR 35 n 35 TYR 35 P SER 36 n 36 SER 36 P GLY 37 n 37 GLY 37 P SER 38 n 38 SER 38 P ALA 39 n 39 ALA 39 P SER 40 n 40 SER 40 P MET 41 n 41 MET 41 P LEU 42 n 42 LEU 42 P ALA 43 n 43 ALA 43 P SER 44 n 44 SER 44 P LEU 45 n 45 LEU 45 P THR 46 n 46 THR 46 P ASP 47 n 47 ASP 47 P SER 48 n 48 SER 48 P PHE 49 n 49 PHE 49 P ALA 50 n 50 ALA 50 P ASP 51 n 51 ASP 51 P THR 52 n 52 THR 52 P LEU 53 n 53 LEU 53 P ALA 54 n 54 ALA 54 P SER 55 n 55 SER 55 P ILE 56 n 56 ILE 56 P ILE 57 n 57 ILE 57 P ASN 58 n 58 ASN 58 P PHE 59 n 59 PHE 59 P ILE 60 n 60 ILE 60 P ALA 61 n 61 ALA 61 P ILE 62 n 62 ILE 62 P ARG 63 n 63 ARG 63 P TYR 64 n 64 TYR 64 P ALA 65 n 65 ALA 65 P ILE 66 n 66 ILE 66 P VAL 67 n 67 VAL 67 P PRO 68 n 68 PRO 68 P ALA 69 n 69 ALA 69 P ASP 70 n 70 ASP 70 P HIS 71 n 71 HIS 71 P ASP 72 n 72 ASP 72 P HIS 73 n 73 HIS 73 P ARG 74 n 74 ARG 74 P TYR 75 n 75 TYR 75 P GLY 76 n 76 GLY 76 P HIS 77 n 77 HIS 77 P GLY 78 n 78 GLY 78 P LYS 79 n 79 LYS 79 P ALA 80 n 80 ALA 80 P GLU 81 n 81 GLU 81 P PRO 82 n 82 PRO 82 P LEU 83 n 83 LEU 83 P ALA 84 n 84 ALA 84 P ALA 85 n 85 ALA 85 P LEU 86 n 86 LEU 86 P ALA 87 n 87 ALA 87 P GLN 88 n 88 GLN 88 P SER 89 n 89 SER 89 P ALA 90 n 90 ALA 90 P PHE 91 n 91 PHE 91 P ILE 92 n 92 ILE 92 P MET 93 n 93 MET 93 P GLY 94 n 94 GLY 94 P SER 95 n 95 SER 95 P ALA 96 n 96 ALA 96 P PHE 97 n 97 PHE 97 P LEU 98 n 98 LEU 98 P LEU 99 n 99 LEU 99 P LEU 100 n 100 LEU 100 P PHE 101 n 101 PHE 101 P TYR 102 n 102 TYR 102 P GLY 103 n 103 GLY 103 P GLY 104 n 104 GLY 104 P GLU 105 n 105 GLU 105 P ARG 106 n 106 ARG 106 P LEU 107 n 107 LEU 107 P LEU 108 n 108 LEU 108 P ASN 109 n 109 ASN 109 P PRO 110 n 110 PRO 110 P SER 111 n 111 SER 111 P PRO 112 n 112 PRO 112 P VAL 113 n 113 VAL 113 P GLU 114 n 114 GLU 114 P ASN 115 n 115 ASN 115 P ALA 116 n 116 ALA 116 P THR 117 n 117 THR 117 P LEU 118 n 118 LEU 118 P GLY 119 n 119 GLY 119 P VAL 120 n 120 VAL 120 P VAL 121 n 121 VAL 121 P VAL 122 n 122 VAL 122 P SER 123 n 123 SER 123 P VAL 124 n 124 VAL 124 P VAL 125 n 125 VAL 125 P ALA 126 n 126 ALA 126 P ILE 127 n 127 ILE 127 P VAL 128 n 128 VAL 128 P LEU 129 n 129 LEU 129 P THR 130 n 130 THR 130 P LEU 131 n 131 LEU 131 P ALA 132 n 132 ALA 132 P LEU 133 n 133 LEU 133 P VAL 134 n 134 VAL 134 P LEU 135 n 135 LEU 135 P LEU 136 n 136 LEU 136 P GLN 137 n 137 GLN 137 P LYS 138 n 138 LYS 138 P ARG 139 n 139 ARG 139 P ALA 140 n 140 ALA 140 P LEU 141 n 141 LEU 141 P ALA 142 n 142 ALA 142 P ALA 143 n 143 ALA 143 P THR 144 n 144 THR 144 P ASN 145 n 145 ASN 145 P SER 146 n 146 SER 146 P THR 147 n 147 THR 147 P VAL 148 n 148 VAL 148 P VAL 149 n 149 VAL 149 P GLU 150 n 150 GLU 150 P ALA 151 n 151 ALA 151 P ASP 152 n 152 ASP 152 P SER 153 n 153 SER 153 P LEU 154 n 154 LEU 154 P HIS 155 n 155 HIS 155 P TYR 156 n 156 TYR 156 P LYS 157 n 157 LYS 157 P SER 158 n 158 SER 158 P ASP 159 n 159 ASP 159 P LEU 160 n 160 LEU 160 P PHE 161 n 161 PHE 161 P LEU 162 n 162 LEU 162 P ASN 163 n 163 ASN 163 P ALA 164 n 164 ALA 164 P ALA 165 n 165 ALA 165 P VAL 166 n 166 VAL 166 P LEU 167 n 167 LEU 167 P LEU 168 n 168 LEU 168 P ALA 169 n 169 ALA 169 P LEU 170 n 170 LEU 170 P VAL 171 n 171 VAL 171 P LEU 172 n 172 LEU 172 P SER 173 n 173 SER 173 P GLN 174 n 174 GLN 174 P TYR 175 n 175 TYR 175 P GLY 176 n 176 GLY 176 P TRP 177 n 177 TRP 177 P TRP 178 n 178 TRP 178 P TRP 179 n 179 TRP 179 P ALA 180 n 180 ALA 180 P ASP 181 n 181 ASP 181 P GLY 182 n 182 GLY 182 P LEU 183 n 183 LEU 183 P PHE 184 n 184 PHE 184 P ALA 185 n 185 ALA 185 P VAL 186 n 186 VAL 186 P LEU 187 n 187 LEU 187 P ILE 188 n 188 ILE 188 P ALA 189 n 189 ALA 189 P CYS 190 n 190 CYS 190 P TYR 191 n 191 TYR 191 P ILE 192 n 192 ILE 192 P GLY 193 n 193 GLY 193 P GLN 194 n 194 GLN 194 P GLN 195 n 195 GLN 195 P ALA 196 n 196 ALA 196 P PHE 197 n 197 PHE 197 P ASP 198 n 198 ASP 198 P LEU 199 n 199 LEU 199 P GLY 200 n 200 GLY 200 P TYR 201 n 201 TYR 201 P ARG 202 n 202 ARG 202 P SER 203 n 203 SER 203 P ILE 204 n 204 ILE 204 P GLN 205 n 205 GLN 205 P ALA 206 n 206 ALA 206 P LEU 207 n 207 LEU 207 P LEU 208 n 208 LEU 208 P ASP 209 n 209 ASP 209 P ARG 210 n 210 ARG 210 P GLU 211 n 211 GLU 211 P LEU 212 n 212 LEU 212 P ASP 213 n 213 ASP 213 P GLU 214 n 214 GLU 214 P ASP 215 n 215 ASP 215 P THR 216 n 216 THR 216 P ARG 217 n 217 ARG 217 P GLN 218 n 218 GLN 218 P ARG 219 n 219 ARG 219 P ILE 220 n 220 ILE 220 P LYS 221 n 221 LYS 221 P LEU 222 n 222 LEU 222 P ILE 223 n 223 ILE 223 P ALA 224 n 224 ALA 224 P LYS 225 n 225 LYS 225 P GLU 226 n 226 GLU 226 P ASP 227 n 227 ASP 227 P PRO 228 n 228 PRO 228 P ARG 229 n 229 ARG 229 P VAL 230 n 230 VAL 230 P LEU 231 n 231 LEU 231 P GLY 232 n 232 GLY 232 P LEU 233 n 233 LEU 233 P HIS 234 n 234 HIS 234 P ASP 235 n 235 ASP 235 P LEU 236 n 236 LEU 236 P ARG 237 n 237 ARG 237 P THR 238 n 238 THR 238 P ARG 239 n 239 ARG 239 P GLN 240 n 240 GLN 240 P ALA 241 n 241 ALA 241 P GLY 242 n 242 GLY 242 P LYS 243 n 243 LYS 243 P THR 244 n 244 THR 244 P VAL 245 n 245 VAL 245 P PHE 246 n 246 PHE 246 P ILE 247 n 247 ILE 247 P GLN 248 n 248 GLN 248 P PHE 249 n 249 PHE 249 P HIS 250 n 250 HIS 250 P LEU 251 n 251 LEU 251 P GLU 252 n 252 GLU 252 P LEU 253 n 253 LEU 253 P ASP 254 n 254 ASP 254 P GLY 255 n 255 GLY 255 P ASN 256 n 256 ASN 256 P LEU 257 n 257 LEU 257 P SER 258 n 258 SER 258 P LEU 259 n 259 LEU 259 P ASN 260 n 260 ASN 260 P GLU 261 n 261 GLU 261 P ALA 262 n 262 ALA 262 P HIS 263 n 263 HIS 263 P SER 264 n 264 SER 264 P ILE 265 n 265 ILE 265 P THR 266 n 266 THR 266 P ASP 267 n 267 ASP 267 P THR 268 n 268 THR 268 P THR 269 n 269 THR 269 P GLY 270 n 270 GLY 270 P LEU 271 n 271 LEU 271 P ARG 272 n 272 ARG 272 P VAL 273 n 273 VAL 273 P LYS 274 n 274 LYS 274 P ALA 275 n 275 ALA 275 P ALA 276 n 276 ALA 276 P PHE 277 n 277 PHE 277 P GLU 278 n 278 GLU 278 P ASP 279 n 279 ASP 279 P ALA 280 n 280 ALA 280 P GLU 281 n 281 GLU 281 P VAL 282 n 282 VAL 282 P ILE 283 n 283 ILE 283 P ILE 284 n 284 ILE 284 P HIS 285 n 285 HIS 285 P GLN 286 n 286 GLN 286 P ASP 287 n 287 ASP 287 P PRO 288 n 288 PRO 288 P VAL 289 n 289 VAL 289 P GLN 290 n 290 GLN 290 P VAL 291 n 291 VAL 291 P GLU 292 n 292 GLU 292 P PRO 293 n 293 PRO 293 P THR 294 n 294 THR 294 P THR 295 n 295 THR 295 P GLN 296 n 296 GLN 296 P n 297 297 P n 298 298 P n 299 299 P n 300 300 P n 301 301 P n 302 302 P n 303 303 P n 304 304 P n 305 305 P n 306 306 P MET 297 n 1 MET 297 Q THR 298 n 2 THR 298 Q GLN 299 n 3 GLN 299 Q THR 300 n 4 THR 300 Q SER 301 n 5 SER 301 Q GLN 302 n 6 GLN 302 Q TYR 303 n 7 TYR 303 Q ASP 304 n 8 ASP 304 Q PHE 305 n 9 PHE 305 Q TRP 306 n 10 TRP 306 Q VAL 307 n 11 VAL 307 Q LYS 308 n 12 LYS 308 Q LEU 309 n 13 LEU 309 Q ALA 310 n 14 ALA 310 Q SER 311 n 15 SER 311 Q ARG 312 n 16 ARG 312 Q ALA 313 n 17 ALA 313 Q SER 314 n 18 SER 314 Q VAL 315 n 19 VAL 315 Q ALA 316 n 20 ALA 316 Q THR 317 n 21 THR 317 Q ALA 318 n 22 ALA 318 Q LEU 319 n 23 LEU 319 Q THR 320 n 24 THR 320 Q LEU 321 n 25 LEU 321 Q ILE 322 n 26 ILE 322 Q THR 323 n 27 THR 323 Q ILE 324 n 28 ILE 324 Q LYS 325 n 29 LYS 325 Q LEU 326 n 30 LEU 326 Q LEU 327 n 31 LEU 327 Q ALA 328 n 32 ALA 328 Q TRP 329 n 33 TRP 329 Q LEU 330 n 34 LEU 330 Q TYR 331 n 35 TYR 331 Q SER 332 n 36 SER 332 Q GLY 333 n 37 GLY 333 Q SER 334 n 38 SER 334 Q ALA 335 n 39 ALA 335 Q SER 336 n 40 SER 336 Q MET 337 n 41 MET 337 Q LEU 338 n 42 LEU 338 Q ALA 339 n 43 ALA 339 Q SER 340 n 44 SER 340 Q LEU 341 n 45 LEU 341 Q THR 342 n 46 THR 342 Q ASP 343 n 47 ASP 343 Q SER 344 n 48 SER 344 Q PHE 345 n 49 PHE 345 Q ALA 346 n 50 ALA 346 Q ASP 347 n 51 ASP 347 Q THR 348 n 52 THR 348 Q LEU 349 n 53 LEU 349 Q ALA 350 n 54 ALA 350 Q SER 351 n 55 SER 351 Q ILE 352 n 56 ILE 352 Q ILE 353 n 57 ILE 353 Q ASN 354 n 58 ASN 354 Q PHE 355 n 59 PHE 355 Q ILE 356 n 60 ILE 356 Q ALA 357 n 61 ALA 357 Q ILE 358 n 62 ILE 358 Q ARG 359 n 63 ARG 359 Q TYR 360 n 64 TYR 360 Q ALA 361 n 65 ALA 361 Q ILE 362 n 66 ILE 362 Q VAL 363 n 67 VAL 363 Q PRO 364 n 68 PRO 364 Q ALA 365 n 69 ALA 365 Q ASP 366 n 70 ASP 366 Q HIS 367 n 71 HIS 367 Q ASP 368 n 72 ASP 368 Q HIS 369 n 73 HIS 369 Q ARG 370 n 74 ARG 370 Q TYR 371 n 75 TYR 371 Q GLY 372 n 76 GLY 372 Q HIS 373 n 77 HIS 373 Q GLY 374 n 78 GLY 374 Q LYS 375 n 79 LYS 375 Q ALA 376 n 80 ALA 376 Q GLU 377 n 81 GLU 377 Q PRO 378 n 82 PRO 378 Q LEU 379 n 83 LEU 379 Q ALA 380 n 84 ALA 380 Q ALA 381 n 85 ALA 381 Q LEU 382 n 86 LEU 382 Q ALA 383 n 87 ALA 383 Q GLN 384 n 88 GLN 384 Q SER 385 n 89 SER 385 Q ALA 386 n 90 ALA 386 Q PHE 387 n 91 PHE 387 Q ILE 388 n 92 ILE 388 Q MET 389 n 93 MET 389 Q GLY 390 n 94 GLY 390 Q SER 391 n 95 SER 391 Q ALA 392 n 96 ALA 392 Q PHE 393 n 97 PHE 393 Q LEU 394 n 98 LEU 394 Q LEU 395 n 99 LEU 395 Q LEU 396 n 100 LEU 396 Q PHE 397 n 101 PHE 397 Q TYR 398 n 102 TYR 398 Q GLY 399 n 103 GLY 399 Q GLY 400 n 104 GLY 400 Q GLU 401 n 105 GLU 401 Q ARG 402 n 106 ARG 402 Q LEU 403 n 107 LEU 403 Q LEU 404 n 108 LEU 404 Q ASN 405 n 109 ASN 405 Q PRO 406 n 110 PRO 406 Q SER 407 n 111 SER 407 Q PRO 408 n 112 PRO 408 Q VAL 409 n 113 VAL 409 Q GLU 410 n 114 GLU 410 Q ASN 411 n 115 ASN 411 Q ALA 412 n 116 ALA 412 Q THR 413 n 117 THR 413 Q LEU 414 n 118 LEU 414 Q GLY 415 n 119 GLY 415 Q VAL 416 n 120 VAL 416 Q VAL 417 n 121 VAL 417 Q VAL 418 n 122 VAL 418 Q SER 419 n 123 SER 419 Q VAL 420 n 124 VAL 420 Q VAL 421 n 125 VAL 421 Q ALA 422 n 126 ALA 422 Q ILE 423 n 127 ILE 423 Q VAL 424 n 128 VAL 424 Q LEU 425 n 129 LEU 425 Q THR 426 n 130 THR 426 Q LEU 427 n 131 LEU 427 Q ALA 428 n 132 ALA 428 Q LEU 429 n 133 LEU 429 Q VAL 430 n 134 VAL 430 Q LEU 431 n 135 LEU 431 Q LEU 432 n 136 LEU 432 Q GLN 433 n 137 GLN 433 Q LYS 434 n 138 LYS 434 Q ARG 435 n 139 ARG 435 Q ALA 436 n 140 ALA 436 Q LEU 437 n 141 LEU 437 Q ALA 438 n 142 ALA 438 Q ALA 439 n 143 ALA 439 Q THR 440 n 144 THR 440 Q ASN 441 n 145 ASN 441 Q SER 442 n 146 SER 442 Q THR 443 n 147 THR 443 Q VAL 444 n 148 VAL 444 Q VAL 445 n 149 VAL 445 Q GLU 446 n 150 GLU 446 Q ALA 447 n 151 ALA 447 Q ASP 448 n 152 ASP 448 Q SER 449 n 153 SER 449 Q LEU 450 n 154 LEU 450 Q HIS 451 n 155 HIS 451 Q TYR 452 n 156 TYR 452 Q LYS 453 n 157 LYS 453 Q SER 454 n 158 SER 454 Q ASP 455 n 159 ASP 455 Q LEU 456 n 160 LEU 456 Q PHE 457 n 161 PHE 457 Q LEU 458 n 162 LEU 458 Q ASN 459 n 163 ASN 459 Q ALA 460 n 164 ALA 460 Q ALA 461 n 165 ALA 461 Q VAL 462 n 166 VAL 462 Q LEU 463 n 167 LEU 463 Q LEU 464 n 168 LEU 464 Q ALA 465 n 169 ALA 465 Q LEU 466 n 170 LEU 466 Q VAL 467 n 171 VAL 467 Q LEU 468 n 172 LEU 468 Q SER 469 n 173 SER 469 Q GLN 470 n 174 GLN 470 Q TYR 471 n 175 TYR 471 Q GLY 472 n 176 GLY 472 Q TRP 473 n 177 TRP 473 Q TRP 474 n 178 TRP 474 Q TRP 475 n 179 TRP 475 Q ALA 476 n 180 ALA 476 Q ASP 477 n 181 ASP 477 Q GLY 478 n 182 GLY 478 Q LEU 479 n 183 LEU 479 Q PHE 480 n 184 PHE 480 Q ALA 481 n 185 ALA 481 Q VAL 482 n 186 VAL 482 Q LEU 483 n 187 LEU 483 Q ILE 484 n 188 ILE 484 Q ALA 485 n 189 ALA 485 Q CYS 486 n 190 CYS 486 Q TYR 487 n 191 TYR 487 Q ILE 488 n 192 ILE 488 Q GLY 489 n 193 GLY 489 Q GLN 490 n 194 GLN 490 Q GLN 491 n 195 GLN 491 Q ALA 492 n 196 ALA 492 Q PHE 493 n 197 PHE 493 Q ASP 494 n 198 ASP 494 Q LEU 495 n 199 LEU 495 Q GLY 496 n 200 GLY 496 Q TYR 497 n 201 TYR 497 Q ARG 498 n 202 ARG 498 Q SER 499 n 203 SER 499 Q ILE 500 n 204 ILE 500 Q GLN 501 n 205 GLN 501 Q ALA 502 n 206 ALA 502 Q LEU 503 n 207 LEU 503 Q LEU 504 n 208 LEU 504 Q ASP 505 n 209 ASP 505 Q ARG 506 n 210 ARG 506 Q GLU 507 n 211 GLU 507 Q LEU 508 n 212 LEU 508 Q ASP 509 n 213 ASP 509 Q GLU 510 n 214 GLU 510 Q ASP 511 n 215 ASP 511 Q THR 512 n 216 THR 512 Q ARG 513 n 217 ARG 513 Q GLN 514 n 218 GLN 514 Q ARG 515 n 219 ARG 515 Q ILE 516 n 220 ILE 516 Q LYS 517 n 221 LYS 517 Q LEU 518 n 222 LEU 518 Q ILE 519 n 223 ILE 519 Q ALA 520 n 224 ALA 520 Q LYS 521 n 225 LYS 521 Q GLU 522 n 226 GLU 522 Q ASP 523 n 227 ASP 523 Q PRO 524 n 228 PRO 524 Q ARG 525 n 229 ARG 525 Q VAL 526 n 230 VAL 526 Q LEU 527 n 231 LEU 527 Q GLY 528 n 232 GLY 528 Q LEU 529 n 233 LEU 529 Q HIS 530 n 234 HIS 530 Q ASP 531 n 235 ASP 531 Q LEU 532 n 236 LEU 532 Q ARG 533 n 237 ARG 533 Q THR 534 n 238 THR 534 Q ARG 535 n 239 ARG 535 Q GLN 536 n 240 GLN 536 Q ALA 537 n 241 ALA 537 Q GLY 538 n 242 GLY 538 Q LYS 539 n 243 LYS 539 Q THR 540 n 244 THR 540 Q VAL 541 n 245 VAL 541 Q PHE 542 n 246 PHE 542 Q ILE 543 n 247 ILE 543 Q GLN 544 n 248 GLN 544 Q PHE 545 n 249 PHE 545 Q HIS 546 n 250 HIS 546 Q LEU 547 n 251 LEU 547 Q GLU 548 n 252 GLU 548 Q LEU 549 n 253 LEU 549 Q ASP 550 n 254 ASP 550 Q GLY 551 n 255 GLY 551 Q ASN 552 n 256 ASN 552 Q LEU 553 n 257 LEU 553 Q SER 554 n 258 SER 554 Q LEU 555 n 259 LEU 555 Q ASN 556 n 260 ASN 556 Q GLU 557 n 261 GLU 557 Q ALA 558 n 262 ALA 558 Q HIS 559 n 263 HIS 559 Q SER 560 n 264 SER 560 Q ILE 561 n 265 ILE 561 Q THR 562 n 266 THR 562 Q ASP 563 n 267 ASP 563 Q THR 564 n 268 THR 564 Q THR 565 n 269 THR 565 Q GLY 566 n 270 GLY 566 Q LEU 567 n 271 LEU 567 Q ARG 568 n 272 ARG 568 Q VAL 569 n 273 VAL 569 Q LYS 570 n 274 LYS 570 Q ALA 571 n 275 ALA 571 Q ALA 572 n 276 ALA 572 Q PHE 573 n 277 PHE 573 Q GLU 574 n 278 GLU 574 Q ASP 575 n 279 ASP 575 Q ALA 576 n 280 ALA 576 Q GLU 577 n 281 GLU 577 Q VAL 578 n 282 VAL 578 Q ILE 579 n 283 ILE 579 Q ILE 580 n 284 ILE 580 Q HIS 581 n 285 HIS 581 Q GLN 582 n 286 GLN 582 Q ASP 583 n 287 ASP 583 Q PRO 584 n 288 PRO 584 Q VAL 585 n 289 VAL 585 Q GLN 586 n 290 GLN 586 Q VAL 587 n 291 VAL 587 Q GLU 588 n 292 GLU 588 Q PRO 589 n 293 PRO 589 Q THR 590 n 294 THR 590 Q THR 591 n 295 THR 591 Q GLN 592 n 296 GLN 592 Q n 297 593 Q n 298 594 Q n 299 595 Q n 300 596 Q n 301 597 Q n 302 598 Q n 303 599 Q n 304 600 Q n 305 601 Q n 306 602 Q representative helical assembly 36 36-meric helical asymmetric unit 2 dimeric helical asymmetric unit, std helical frame 2 dimeric 1.00000000 0.00000000 0.00000000 0.00000000 0.00000000 -1.00000000 0.00000000 1.00000000 0.00000000 transform to helical frame 0.00000 0.00000 0.00000 -0.98228725 0.00000000 -0.18738131 0.00000000 1.00000000 0.00000000 0.18738131 0.00000000 -0.98228725 helical symmetry operation 0.00000 -51.30000 0.00000 0.65342060 0.00000000 -0.75699506 0.00000000 1.00000000 0.00000000 0.75699506 0.00000000 0.65342060 helical symmetry operation 0.00000 -51.30000 0.00000 0.32886665 0.00000000 0.94437637 0.00000000 1.00000000 0.00000000 -0.94437637 0.00000000 0.32886665 helical symmetry operation 0.00000 -51.30000 0.00000 -0.38751559 0.00000000 -0.92186315 0.00000000 1.00000000 0.00000000 0.92186315 0.00000000 -0.38751559 helical symmetry operation 0.00000 -34.20000 0.00000 0.99211470 0.00000000 0.12533323 0.00000000 1.00000000 0.00000000 -0.12533323 0.00000000 0.99211470 helical symmetry operation 0.00000 -34.20000 0.00000 -0.60459911 0.00000000 0.79652992 0.00000000 1.00000000 0.00000000 -0.79652992 0.00000000 -0.60459911 helical symmetry operation 0.00000 -34.20000 0.00000 0.55339155 0.00000000 -0.83292124 0.00000000 1.00000000 0.00000000 0.83292124 0.00000000 0.55339155 helical symmetry operation 0.00000 -17.10000 0.00000 0.44463518 0.00000000 0.89571176 0.00000000 1.00000000 0.00000000 -0.89571176 0.00000000 0.44463518 helical symmetry operation 0.00000 -17.10000 0.00000 -0.99802673 0.00000000 -0.06279052 0.00000000 1.00000000 0.00000000 0.06279052 0.00000000 -0.99802673 helical symmetry operation 0.00000 -17.10000 0.00000 1.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000000 0.00000000 0.00000000 1.00000000 1_555 x,y,z identity operation 0.00000 0.00000 0.00000 -0.50000000 0.00000000 0.86602540 0.00000000 1.00000000 0.00000000 -0.86602540 0.00000000 -0.50000000 helical symmetry operation 0.00000 0.00000 0.00000 -0.50000000 0.00000000 -0.86602540 0.00000000 1.00000000 0.00000000 0.86602540 0.00000000 -0.50000000 helical symmetry operation 0.00000 0.00000 0.00000 0.55339155 0.00000000 0.83292124 0.00000000 1.00000000 0.00000000 -0.83292124 0.00000000 0.55339155 helical symmetry operation 0.00000 17.10000 0.00000 -0.99802673 0.00000000 0.06279052 0.00000000 1.00000000 0.00000000 -0.06279052 0.00000000 -0.99802673 helical symmetry operation 0.00000 17.10000 0.00000 0.44463518 0.00000000 -0.89571176 0.00000000 1.00000000 0.00000000 0.89571176 0.00000000 0.44463518 helical symmetry operation 0.00000 17.10000 0.00000 -0.38751559 0.00000000 0.92186315 0.00000000 1.00000000 0.00000000 -0.92186315 0.00000000 -0.38751559 helical symmetry operation 0.00000 34.20000 0.00000 -0.60459911 0.00000000 -0.79652992 0.00000000 1.00000000 0.00000000 0.79652992 0.00000000 -0.60459911 helical symmetry operation 0.00000 34.20000 0.00000 0.99211470 0.00000000 -0.12533323 0.00000000 1.00000000 0.00000000 0.12533323 0.00000000 0.99211470 helical symmetry operation 0.00000 34.20000 0.00000 P N ARG 239 A N ARG 239 P O PHE 246 A O PHE 246 P N ILE 247 A N ILE 247 P O GLU 281 A O GLU 281 P N LEU 253 A N LEU 253 P O ASP 287 A O ASP 287 Q N ARG 535 B N ARG 239 Q O PHE 542 B O PHE 246 Q N ILE 543 B N ILE 247 Q O GLU 577 B O GLU 281 1 P HIS 297 A HIS 297 1 Y 1 P HIS 298 A HIS 298 1 Y 1 P HIS 299 A HIS 299 1 Y 1 P HIS 300 A HIS 300 1 Y 1 P HIS 301 A HIS 301 1 Y 1 P HIS 302 A HIS 302 1 Y 1 P HIS 303 A HIS 303 1 Y 1 P HIS 304 A HIS 304 1 Y 1 P HIS 305 A HIS 305 1 Y 1 P HIS 306 A HIS 306 1 Y 1 Q HIS 593 B HIS 297 1 Y 1 Q HIS 594 B HIS 298 1 Y 1 Q HIS 595 B HIS 299 1 Y 1 Q HIS 596 B HIS 300 1 Y 1 Q HIS 597 B HIS 301 1 Y 1 Q HIS 598 B HIS 302 1 Y 1 Q HIS 599 B HIS 303 1 Y 1 Q HIS 600 B HIS 304 1 Y 1 Q HIS 601 B HIS 305 1 Y 1 Q HIS 602 B HIS 306 1 Y 1 P P LEU VAL 170 171 -135.53 1 P P SER GLN 173 174 -140.53 1 P P ALA GLU 280 281 144.60 1 Q Q THR GLN 298 299 -149.63 1 Q Q ASP LEU 531 532 142.48 1 P TYR 102 0.094 SIDE CHAIN 1 P ARG 139 0.171 SIDE CHAIN 1 P TYR 191 0.072 SIDE CHAIN 1 P ARG 210 0.187 SIDE CHAIN 1 P ARG 217 0.141 SIDE CHAIN 1 P ARG 219 0.107 SIDE CHAIN 1 P ARG 237 0.083 SIDE CHAIN 1 P ARG 239 0.086 SIDE CHAIN 1 P ARG 272 0.165 SIDE CHAIN 1 Q ARG 312 0.088 SIDE CHAIN 1 Q HIS 373 0.105 SIDE CHAIN 1 Q ARG 435 0.198 SIDE CHAIN 1 Q TYR 452 0.143 SIDE CHAIN 1 Q ARG 506 0.167 SIDE CHAIN 1 Q ARG 535 0.089 SIDE CHAIN 1 -4.29 0.70 120.80 116.51 P P P CB CG CD2 PHE PHE PHE 59 59 59 N 1 4.45 0.70 120.80 125.25 P P P CB CG CD1 PHE PHE PHE 59 59 59 N 1 3.86 0.50 120.30 124.16 P P P NE CZ NH1 ARG ARG ARG 219 219 219 N 1 3.41 0.50 120.30 123.71 P P P NE CZ NH1 ARG ARG ARG 239 239 239 N 1 3.18 0.50 120.30 123.48 P P P NE CZ NH1 ARG ARG ARG 272 272 272 N 1 3.82 0.50 120.30 124.12 Q Q Q NE CZ NH1 ARG ARG ARG 402 402 402 N 1 -3.77 0.50 120.30 116.53 Q Q Q NE CZ NH2 ARG ARG ARG 506 506 506 N 1 P TYR 7 85.57 -71.90 1 P PHE 9 54.57 -118.99 1 P VAL 11 -63.63 79.60 1 P ILE 26 -56.50 -7.77 1 P ALA 32 -65.12 11.45 1 P ASP 51 -28.27 -83.04 1 P ASP 70 -46.69 164.86 1 P HIS 71 -148.32 11.59 1 P ARG 74 67.82 -22.29 1 P HIS 77 -80.17 42.04 1 P LEU 108 93.31 -17.41 1 P PRO 112 -72.42 -169.62 1 P THR 117 -164.32 -11.63 1 P LEU 118 72.82 120.19 1 P THR 144 173.36 94.48 1 P LEU 160 -56.12 -5.03 1 P VAL 171 50.77 -162.54 1 P LEU 172 -32.91 135.12 1 P TRP 178 67.62 -24.63 1 P TRP 179 80.62 104.18 1 P ASP 213 -53.59 173.21 1 P LEU 233 117.94 86.56 1 P ARG 237 -89.57 41.71 1 P ALA 241 -163.91 114.24 1 P ILE 247 -101.91 77.87 1 P LEU 251 -162.08 106.81 1 Q SER 301 -30.06 155.90 1 Q TYR 303 -152.04 15.91 1 Q ASP 304 39.31 174.38 1 Q PHE 305 55.27 75.81 1 Q LYS 308 -145.90 16.60 1 Q ASP 366 -92.07 -103.80 1 Q ARG 370 -4.86 -85.44 1 Q HIS 373 -37.40 -22.30 1 Q LEU 404 67.61 -13.94 1 Q SER 407 142.45 150.28 1 Q THR 413 47.63 -146.73 1 Q VAL 416 -36.40 -24.03 1 Q VAL 445 -162.74 -9.85 1 Q LEU 463 -78.43 -146.57 1 Q ALA 465 -141.84 11.03 1 Q LEU 466 -145.30 -64.68 1 Q ASP 505 -87.23 41.73 1 Q ASP 509 -53.29 -169.67 1 Q ALA 520 -80.51 36.06 1 Q LYS 521 -149.71 17.49 1 Q LEU 529 69.38 66.57 1 Q LEU 532 -172.74 85.04 1 Q LYS 539 -127.12 -95.85 1 Q THR 540 3.84 107.21 1 Q ASP 550 -34.81 132.57 0 4586 0 0 4586 Inward-Facing Conformation of the Zinc Transporter YiiP revealed by Cryo-electron Microscopy 1 N N 1 N N THE SYMMETRY OF THE HELIX IS D3. P ALA 14 A ALA 14 HELX_P P ILE 26 A ILE 26 1 1 13 P ILE 26 A ILE 26 HELX_P P ALA 32 A ALA 32 1 2 7 P ALA 43 A ALA 43 HELX_P P SER 48 A SER 48 1 3 6 P PHE 49 A PHE 49 HELX_P P ILE 66 A ILE 66 1 4 18 P LYS 79 A LYS 79 HELX_P P ARG 106 A ARG 106 1 5 28 P GLY 119 A GLY 119 HELX_P P ALA 142 A ALA 142 1 6 24 P SER 146 A SER 146 HELX_P P LEU 160 A LEU 160 1 7 15 P ALA 180 A ALA 180 HELX_P P LEU 208 A LEU 208 1 8 29 P ASP 213 A ASP 213 HELX_P P ASP 227 A ASP 227 1 9 15 P SER 258 A SER 258 HELX_P P PHE 277 A PHE 277 1 10 20 Q ALA 310 B ALA 14 HELX_P Q LEU 321 B LEU 25 1 11 12 Q LEU 321 B LEU 25 HELX_P Q LEU 327 B LEU 31 1 12 7 Q LEU 338 B LEU 42 HELX_P Q ASP 343 B ASP 47 1 13 6 Q ASP 343 B ASP 47 HELX_P Q VAL 363 B VAL 67 1 14 21 Q GLY 372 B GLY 76 HELX_P Q GLY 374 B GLY 78 5 15 3 Q LYS 375 B LYS 79 HELX_P Q ARG 402 B ARG 106 1 16 28 Q VAL 416 B VAL 120 HELX_P Q THR 440 B THR 144 1 17 25 Q GLU 446 B GLU 150 HELX_P Q PHE 457 B PHE 161 1 18 12 Q ASP 477 B ASP 181 HELX_P Q LEU 504 B LEU 208 1 19 28 Q GLU 510 B GLU 214 HELX_P Q ALA 520 B ALA 224 1 20 11 Q SER 554 B SER 258 HELX_P Q PHE 573 B PHE 277 1 21 20 METAL TRANSPORT zinc transporter, secondary transporter, alternating access mechanism, METAL TRANSPORT, Structural Genomics, PSI-Biology, Transcontinental EM Initiative for Membrane Protein Structure, TEMIMPS Q8E919_SHEON UNP 1 1 Q8E919 MTQTSQYDFWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKA EPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDL FLNAAVLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQ AGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQVEPTTQ 1 296 3J1Z 1 296 Q8E919 P 1 1 296 1 296 3J1Z 297 592 Q8E919 Q 1 1 296 1 expression tag HIS 297 3J1Z P Q8E919 UNP 297 1 expression tag HIS 298 3J1Z P Q8E919 UNP 298 1 expression tag HIS 299 3J1Z P Q8E919 UNP 299 1 expression tag HIS 300 3J1Z P Q8E919 UNP 300 1 expression tag HIS 301 3J1Z P Q8E919 UNP 301 1 expression tag HIS 302 3J1Z P Q8E919 UNP 302 1 expression tag HIS 303 3J1Z P Q8E919 UNP 303 1 expression tag HIS 304 3J1Z P Q8E919 UNP 304 1 expression tag HIS 305 3J1Z P Q8E919 UNP 305 1 expression tag HIS 306 3J1Z P Q8E919 UNP 306 2 expression tag HIS 593 3J1Z Q Q8E919 UNP 297 2 expression tag HIS 594 3J1Z Q Q8E919 UNP 298 2 expression tag HIS 595 3J1Z Q Q8E919 UNP 299 2 expression tag HIS 596 3J1Z Q Q8E919 UNP 300 2 expression tag HIS 597 3J1Z Q Q8E919 UNP 301 2 expression tag HIS 598 3J1Z Q Q8E919 UNP 302 2 expression tag HIS 599 3J1Z Q Q8E919 UNP 303 2 expression tag HIS 600 3J1Z Q Q8E919 UNP 304 2 expression tag HIS 601 3J1Z Q Q8E919 UNP 305 2 expression tag HIS 602 3J1Z Q Q8E919 UNP 306 3 2 3 anti-parallel parallel parallel anti-parallel parallel P ARG 239 A ARG 239 P ALA 241 A ALA 241 P THR 244 A THR 244 P PHE 249 A PHE 249 P GLU 281 A GLU 281 P ILE 284 A ILE 284 P GLU 252 A GLU 252 P LEU 253 A LEU 253 P ASP 287 A ASP 287 P PRO 288 A PRO 288 Q ARG 533 B ARG 237 Q GLN 536 B GLN 240 Q VAL 541 B VAL 245 Q PHE 545 B PHE 249 Q GLU 577 B GLU 281 Q ILE 580 B ILE 284 1 P 1