1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Coudray, N.
Valvo, S.
Hu, M.
Lasala, R.
Kim, C.
Vink, M.
Zhou, M.
Provasi, D.
Filizola, M.
Tao, J.
Fang, J.
Penczek, P.A.
Ubarretxena-Belandia, I.
Stokes, D.L.
Transcontinental EM Initiative for Membrane Protein Structure (TEMIMPS)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
N
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
110
2140
2145
10.1073/pnas.1215455110
23341604
Inward-facing conformation of the zinc transporter YiiP revealed by cryoelectron microscopy.
2013
10.2210/pdb3j1z/pdb
pdb_00003j1z
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
x-ray
1
1.0
METHOD--MDFF DETAILS--An initial homology model of YiiP from S. oneidensis was
built with MODELLER 9v7 using the X-ray crystal structure of YiiP from E. coli
(PDB entry 3H90) as a template. This model included 9 residues at the
N-terminus and 4 residues at the C-terminus that were not present in the X-ray
structure. Initial configurations were obtained by manually placing the
symmetry axis of the homology model onto the symmetry axis of the electron
density map and aligning the protein C-terminal domains to the corresponding
densities. In the first step of the MDFF fitting, harmonic potentials were
applied to (a) the four-helix bundle formed by helices M1, M2, M4, and M5
(residues 12-32, 42-65, 119-142, and 147-165, respectively), (b) the M3 and M6
helices at the dimeric interface (residues 78-108 and 179-211, respectively),
and (c) the C-terminal intracellular domain (residues 212-297).
FLEXIBLE FIT
REAL
3H90
1
3H90
PDB
experimental model
2.735
CRYSTAL CELL PARAMETERS WERE A=57.5, B=34.0, C=100.0, ALPHA=90, BETA=90, GAMMA=85.3.
3J1Z
IHRSR
13
HELICAL
20mM TES, 5mM MgCl2, 100mM NaCl, 5mM NaN3
20mM TES, 5mM MgCl2, 100mM NaCl, 5mM NaN3
7
Corrected throughout the reconstruction cycle
YiiP from Shewanella oneidensis in DOPG lipids
0
COMPLEX
2D ARRAY
1
1
HELICAL
56.4
17.1
D3
10
Kodak SO163 film
GENERIC FILM
3J1Z
19
200
51190
2009-02-10
FIELD EMISSION GUN
FLOOD BEAM
FEI TECNAI F20
BRIGHT FIELD
2.1
3000
1600
50000
1
100
holey carbon grid
RECONSTRUCTION
1
EMIP
RECONSTRUCTION
1
SPARX
0.5
NO
NO
NO
YES
ETHANE
Blot for 2-5 seconds before plunging into liquid ethane (Gatan cryoplunger)
3J1Z
GATAN CRYOPLUNGE 3
Blot for 2-5 seconds before plunging
100
33866.660
Cation efflux family protein
2
man
polymer
YiiP, Ferrous-iron efflux pump (Fief)
no
no
MTQTSQYDFWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKA
EPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDL
FLNAAVLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQ
AGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQVEPTTQHHHHHHHHHH
MTQTSQYDFWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKA
EPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDL
FLNAAVLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQ
AGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQVEPTTQHHHHHHHHHH
P,Q
TEMIMPS-GO.15206
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
MR-1
sample
SO_4475
211586
Shewanella oneidensis
469008
Escherichia coli
BL21(DE3)
pET
plasmid
Transcontinental EM Initiative for Membrane Protein Structure
TEMIMPS
PSI:Biology
em_single_particle_entity
em_software
chem_comp_atom
chem_comp_bond
database_2
em_3d_fitting_list
pdbx_initial_refinement_model
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Structure summary
Database references
Database references
Author supporting evidence
Data collection
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-10-10
1
1
2013-01-09
1
2
2013-02-06
1
3
2013-02-13
1
4
2018-07-18
1
5
2024-02-21
_em_software.image_processing_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_em_3d_fitting_list.accession_code
_em_3d_fitting_list.initial_refinement_model_id
_em_3d_fitting_list.source_name
_em_3d_fitting_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.type
_struct_ref_seq_dif.details
Y
RCSB
Y
RCSB
2012-07-24
REL
3
no
1
18
17.1
56.4
3H90
PDB
experimental model
MET
1
n
1
MET
1
P
THR
2
n
2
THR
2
P
GLN
3
n
3
GLN
3
P
THR
4
n
4
THR
4
P
SER
5
n
5
SER
5
P
GLN
6
n
6
GLN
6
P
TYR
7
n
7
TYR
7
P
ASP
8
n
8
ASP
8
P
PHE
9
n
9
PHE
9
P
TRP
10
n
10
TRP
10
P
VAL
11
n
11
VAL
11
P
LYS
12
n
12
LYS
12
P
LEU
13
n
13
LEU
13
P
ALA
14
n
14
ALA
14
P
SER
15
n
15
SER
15
P
ARG
16
n
16
ARG
16
P
ALA
17
n
17
ALA
17
P
SER
18
n
18
SER
18
P
VAL
19
n
19
VAL
19
P
ALA
20
n
20
ALA
20
P
THR
21
n
21
THR
21
P
ALA
22
n
22
ALA
22
P
LEU
23
n
23
LEU
23
P
THR
24
n
24
THR
24
P
LEU
25
n
25
LEU
25
P
ILE
26
n
26
ILE
26
P
THR
27
n
27
THR
27
P
ILE
28
n
28
ILE
28
P
LYS
29
n
29
LYS
29
P
LEU
30
n
30
LEU
30
P
LEU
31
n
31
LEU
31
P
ALA
32
n
32
ALA
32
P
TRP
33
n
33
TRP
33
P
LEU
34
n
34
LEU
34
P
TYR
35
n
35
TYR
35
P
SER
36
n
36
SER
36
P
GLY
37
n
37
GLY
37
P
SER
38
n
38
SER
38
P
ALA
39
n
39
ALA
39
P
SER
40
n
40
SER
40
P
MET
41
n
41
MET
41
P
LEU
42
n
42
LEU
42
P
ALA
43
n
43
ALA
43
P
SER
44
n
44
SER
44
P
LEU
45
n
45
LEU
45
P
THR
46
n
46
THR
46
P
ASP
47
n
47
ASP
47
P
SER
48
n
48
SER
48
P
PHE
49
n
49
PHE
49
P
ALA
50
n
50
ALA
50
P
ASP
51
n
51
ASP
51
P
THR
52
n
52
THR
52
P
LEU
53
n
53
LEU
53
P
ALA
54
n
54
ALA
54
P
SER
55
n
55
SER
55
P
ILE
56
n
56
ILE
56
P
ILE
57
n
57
ILE
57
P
ASN
58
n
58
ASN
58
P
PHE
59
n
59
PHE
59
P
ILE
60
n
60
ILE
60
P
ALA
61
n
61
ALA
61
P
ILE
62
n
62
ILE
62
P
ARG
63
n
63
ARG
63
P
TYR
64
n
64
TYR
64
P
ALA
65
n
65
ALA
65
P
ILE
66
n
66
ILE
66
P
VAL
67
n
67
VAL
67
P
PRO
68
n
68
PRO
68
P
ALA
69
n
69
ALA
69
P
ASP
70
n
70
ASP
70
P
HIS
71
n
71
HIS
71
P
ASP
72
n
72
ASP
72
P
HIS
73
n
73
HIS
73
P
ARG
74
n
74
ARG
74
P
TYR
75
n
75
TYR
75
P
GLY
76
n
76
GLY
76
P
HIS
77
n
77
HIS
77
P
GLY
78
n
78
GLY
78
P
LYS
79
n
79
LYS
79
P
ALA
80
n
80
ALA
80
P
GLU
81
n
81
GLU
81
P
PRO
82
n
82
PRO
82
P
LEU
83
n
83
LEU
83
P
ALA
84
n
84
ALA
84
P
ALA
85
n
85
ALA
85
P
LEU
86
n
86
LEU
86
P
ALA
87
n
87
ALA
87
P
GLN
88
n
88
GLN
88
P
SER
89
n
89
SER
89
P
ALA
90
n
90
ALA
90
P
PHE
91
n
91
PHE
91
P
ILE
92
n
92
ILE
92
P
MET
93
n
93
MET
93
P
GLY
94
n
94
GLY
94
P
SER
95
n
95
SER
95
P
ALA
96
n
96
ALA
96
P
PHE
97
n
97
PHE
97
P
LEU
98
n
98
LEU
98
P
LEU
99
n
99
LEU
99
P
LEU
100
n
100
LEU
100
P
PHE
101
n
101
PHE
101
P
TYR
102
n
102
TYR
102
P
GLY
103
n
103
GLY
103
P
GLY
104
n
104
GLY
104
P
GLU
105
n
105
GLU
105
P
ARG
106
n
106
ARG
106
P
LEU
107
n
107
LEU
107
P
LEU
108
n
108
LEU
108
P
ASN
109
n
109
ASN
109
P
PRO
110
n
110
PRO
110
P
SER
111
n
111
SER
111
P
PRO
112
n
112
PRO
112
P
VAL
113
n
113
VAL
113
P
GLU
114
n
114
GLU
114
P
ASN
115
n
115
ASN
115
P
ALA
116
n
116
ALA
116
P
THR
117
n
117
THR
117
P
LEU
118
n
118
LEU
118
P
GLY
119
n
119
GLY
119
P
VAL
120
n
120
VAL
120
P
VAL
121
n
121
VAL
121
P
VAL
122
n
122
VAL
122
P
SER
123
n
123
SER
123
P
VAL
124
n
124
VAL
124
P
VAL
125
n
125
VAL
125
P
ALA
126
n
126
ALA
126
P
ILE
127
n
127
ILE
127
P
VAL
128
n
128
VAL
128
P
LEU
129
n
129
LEU
129
P
THR
130
n
130
THR
130
P
LEU
131
n
131
LEU
131
P
ALA
132
n
132
ALA
132
P
LEU
133
n
133
LEU
133
P
VAL
134
n
134
VAL
134
P
LEU
135
n
135
LEU
135
P
LEU
136
n
136
LEU
136
P
GLN
137
n
137
GLN
137
P
LYS
138
n
138
LYS
138
P
ARG
139
n
139
ARG
139
P
ALA
140
n
140
ALA
140
P
LEU
141
n
141
LEU
141
P
ALA
142
n
142
ALA
142
P
ALA
143
n
143
ALA
143
P
THR
144
n
144
THR
144
P
ASN
145
n
145
ASN
145
P
SER
146
n
146
SER
146
P
THR
147
n
147
THR
147
P
VAL
148
n
148
VAL
148
P
VAL
149
n
149
VAL
149
P
GLU
150
n
150
GLU
150
P
ALA
151
n
151
ALA
151
P
ASP
152
n
152
ASP
152
P
SER
153
n
153
SER
153
P
LEU
154
n
154
LEU
154
P
HIS
155
n
155
HIS
155
P
TYR
156
n
156
TYR
156
P
LYS
157
n
157
LYS
157
P
SER
158
n
158
SER
158
P
ASP
159
n
159
ASP
159
P
LEU
160
n
160
LEU
160
P
PHE
161
n
161
PHE
161
P
LEU
162
n
162
LEU
162
P
ASN
163
n
163
ASN
163
P
ALA
164
n
164
ALA
164
P
ALA
165
n
165
ALA
165
P
VAL
166
n
166
VAL
166
P
LEU
167
n
167
LEU
167
P
LEU
168
n
168
LEU
168
P
ALA
169
n
169
ALA
169
P
LEU
170
n
170
LEU
170
P
VAL
171
n
171
VAL
171
P
LEU
172
n
172
LEU
172
P
SER
173
n
173
SER
173
P
GLN
174
n
174
GLN
174
P
TYR
175
n
175
TYR
175
P
GLY
176
n
176
GLY
176
P
TRP
177
n
177
TRP
177
P
TRP
178
n
178
TRP
178
P
TRP
179
n
179
TRP
179
P
ALA
180
n
180
ALA
180
P
ASP
181
n
181
ASP
181
P
GLY
182
n
182
GLY
182
P
LEU
183
n
183
LEU
183
P
PHE
184
n
184
PHE
184
P
ALA
185
n
185
ALA
185
P
VAL
186
n
186
VAL
186
P
LEU
187
n
187
LEU
187
P
ILE
188
n
188
ILE
188
P
ALA
189
n
189
ALA
189
P
CYS
190
n
190
CYS
190
P
TYR
191
n
191
TYR
191
P
ILE
192
n
192
ILE
192
P
GLY
193
n
193
GLY
193
P
GLN
194
n
194
GLN
194
P
GLN
195
n
195
GLN
195
P
ALA
196
n
196
ALA
196
P
PHE
197
n
197
PHE
197
P
ASP
198
n
198
ASP
198
P
LEU
199
n
199
LEU
199
P
GLY
200
n
200
GLY
200
P
TYR
201
n
201
TYR
201
P
ARG
202
n
202
ARG
202
P
SER
203
n
203
SER
203
P
ILE
204
n
204
ILE
204
P
GLN
205
n
205
GLN
205
P
ALA
206
n
206
ALA
206
P
LEU
207
n
207
LEU
207
P
LEU
208
n
208
LEU
208
P
ASP
209
n
209
ASP
209
P
ARG
210
n
210
ARG
210
P
GLU
211
n
211
GLU
211
P
LEU
212
n
212
LEU
212
P
ASP
213
n
213
ASP
213
P
GLU
214
n
214
GLU
214
P
ASP
215
n
215
ASP
215
P
THR
216
n
216
THR
216
P
ARG
217
n
217
ARG
217
P
GLN
218
n
218
GLN
218
P
ARG
219
n
219
ARG
219
P
ILE
220
n
220
ILE
220
P
LYS
221
n
221
LYS
221
P
LEU
222
n
222
LEU
222
P
ILE
223
n
223
ILE
223
P
ALA
224
n
224
ALA
224
P
LYS
225
n
225
LYS
225
P
GLU
226
n
226
GLU
226
P
ASP
227
n
227
ASP
227
P
PRO
228
n
228
PRO
228
P
ARG
229
n
229
ARG
229
P
VAL
230
n
230
VAL
230
P
LEU
231
n
231
LEU
231
P
GLY
232
n
232
GLY
232
P
LEU
233
n
233
LEU
233
P
HIS
234
n
234
HIS
234
P
ASP
235
n
235
ASP
235
P
LEU
236
n
236
LEU
236
P
ARG
237
n
237
ARG
237
P
THR
238
n
238
THR
238
P
ARG
239
n
239
ARG
239
P
GLN
240
n
240
GLN
240
P
ALA
241
n
241
ALA
241
P
GLY
242
n
242
GLY
242
P
LYS
243
n
243
LYS
243
P
THR
244
n
244
THR
244
P
VAL
245
n
245
VAL
245
P
PHE
246
n
246
PHE
246
P
ILE
247
n
247
ILE
247
P
GLN
248
n
248
GLN
248
P
PHE
249
n
249
PHE
249
P
HIS
250
n
250
HIS
250
P
LEU
251
n
251
LEU
251
P
GLU
252
n
252
GLU
252
P
LEU
253
n
253
LEU
253
P
ASP
254
n
254
ASP
254
P
GLY
255
n
255
GLY
255
P
ASN
256
n
256
ASN
256
P
LEU
257
n
257
LEU
257
P
SER
258
n
258
SER
258
P
LEU
259
n
259
LEU
259
P
ASN
260
n
260
ASN
260
P
GLU
261
n
261
GLU
261
P
ALA
262
n
262
ALA
262
P
HIS
263
n
263
HIS
263
P
SER
264
n
264
SER
264
P
ILE
265
n
265
ILE
265
P
THR
266
n
266
THR
266
P
ASP
267
n
267
ASP
267
P
THR
268
n
268
THR
268
P
THR
269
n
269
THR
269
P
GLY
270
n
270
GLY
270
P
LEU
271
n
271
LEU
271
P
ARG
272
n
272
ARG
272
P
VAL
273
n
273
VAL
273
P
LYS
274
n
274
LYS
274
P
ALA
275
n
275
ALA
275
P
ALA
276
n
276
ALA
276
P
PHE
277
n
277
PHE
277
P
GLU
278
n
278
GLU
278
P
ASP
279
n
279
ASP
279
P
ALA
280
n
280
ALA
280
P
GLU
281
n
281
GLU
281
P
VAL
282
n
282
VAL
282
P
ILE
283
n
283
ILE
283
P
ILE
284
n
284
ILE
284
P
HIS
285
n
285
HIS
285
P
GLN
286
n
286
GLN
286
P
ASP
287
n
287
ASP
287
P
PRO
288
n
288
PRO
288
P
VAL
289
n
289
VAL
289
P
GLN
290
n
290
GLN
290
P
VAL
291
n
291
VAL
291
P
GLU
292
n
292
GLU
292
P
PRO
293
n
293
PRO
293
P
THR
294
n
294
THR
294
P
THR
295
n
295
THR
295
P
GLN
296
n
296
GLN
296
P
n
297
297
P
n
298
298
P
n
299
299
P
n
300
300
P
n
301
301
P
n
302
302
P
n
303
303
P
n
304
304
P
n
305
305
P
n
306
306
P
MET
297
n
1
MET
297
Q
THR
298
n
2
THR
298
Q
GLN
299
n
3
GLN
299
Q
THR
300
n
4
THR
300
Q
SER
301
n
5
SER
301
Q
GLN
302
n
6
GLN
302
Q
TYR
303
n
7
TYR
303
Q
ASP
304
n
8
ASP
304
Q
PHE
305
n
9
PHE
305
Q
TRP
306
n
10
TRP
306
Q
VAL
307
n
11
VAL
307
Q
LYS
308
n
12
LYS
308
Q
LEU
309
n
13
LEU
309
Q
ALA
310
n
14
ALA
310
Q
SER
311
n
15
SER
311
Q
ARG
312
n
16
ARG
312
Q
ALA
313
n
17
ALA
313
Q
SER
314
n
18
SER
314
Q
VAL
315
n
19
VAL
315
Q
ALA
316
n
20
ALA
316
Q
THR
317
n
21
THR
317
Q
ALA
318
n
22
ALA
318
Q
LEU
319
n
23
LEU
319
Q
THR
320
n
24
THR
320
Q
LEU
321
n
25
LEU
321
Q
ILE
322
n
26
ILE
322
Q
THR
323
n
27
THR
323
Q
ILE
324
n
28
ILE
324
Q
LYS
325
n
29
LYS
325
Q
LEU
326
n
30
LEU
326
Q
LEU
327
n
31
LEU
327
Q
ALA
328
n
32
ALA
328
Q
TRP
329
n
33
TRP
329
Q
LEU
330
n
34
LEU
330
Q
TYR
331
n
35
TYR
331
Q
SER
332
n
36
SER
332
Q
GLY
333
n
37
GLY
333
Q
SER
334
n
38
SER
334
Q
ALA
335
n
39
ALA
335
Q
SER
336
n
40
SER
336
Q
MET
337
n
41
MET
337
Q
LEU
338
n
42
LEU
338
Q
ALA
339
n
43
ALA
339
Q
SER
340
n
44
SER
340
Q
LEU
341
n
45
LEU
341
Q
THR
342
n
46
THR
342
Q
ASP
343
n
47
ASP
343
Q
SER
344
n
48
SER
344
Q
PHE
345
n
49
PHE
345
Q
ALA
346
n
50
ALA
346
Q
ASP
347
n
51
ASP
347
Q
THR
348
n
52
THR
348
Q
LEU
349
n
53
LEU
349
Q
ALA
350
n
54
ALA
350
Q
SER
351
n
55
SER
351
Q
ILE
352
n
56
ILE
352
Q
ILE
353
n
57
ILE
353
Q
ASN
354
n
58
ASN
354
Q
PHE
355
n
59
PHE
355
Q
ILE
356
n
60
ILE
356
Q
ALA
357
n
61
ALA
357
Q
ILE
358
n
62
ILE
358
Q
ARG
359
n
63
ARG
359
Q
TYR
360
n
64
TYR
360
Q
ALA
361
n
65
ALA
361
Q
ILE
362
n
66
ILE
362
Q
VAL
363
n
67
VAL
363
Q
PRO
364
n
68
PRO
364
Q
ALA
365
n
69
ALA
365
Q
ASP
366
n
70
ASP
366
Q
HIS
367
n
71
HIS
367
Q
ASP
368
n
72
ASP
368
Q
HIS
369
n
73
HIS
369
Q
ARG
370
n
74
ARG
370
Q
TYR
371
n
75
TYR
371
Q
GLY
372
n
76
GLY
372
Q
HIS
373
n
77
HIS
373
Q
GLY
374
n
78
GLY
374
Q
LYS
375
n
79
LYS
375
Q
ALA
376
n
80
ALA
376
Q
GLU
377
n
81
GLU
377
Q
PRO
378
n
82
PRO
378
Q
LEU
379
n
83
LEU
379
Q
ALA
380
n
84
ALA
380
Q
ALA
381
n
85
ALA
381
Q
LEU
382
n
86
LEU
382
Q
ALA
383
n
87
ALA
383
Q
GLN
384
n
88
GLN
384
Q
SER
385
n
89
SER
385
Q
ALA
386
n
90
ALA
386
Q
PHE
387
n
91
PHE
387
Q
ILE
388
n
92
ILE
388
Q
MET
389
n
93
MET
389
Q
GLY
390
n
94
GLY
390
Q
SER
391
n
95
SER
391
Q
ALA
392
n
96
ALA
392
Q
PHE
393
n
97
PHE
393
Q
LEU
394
n
98
LEU
394
Q
LEU
395
n
99
LEU
395
Q
LEU
396
n
100
LEU
396
Q
PHE
397
n
101
PHE
397
Q
TYR
398
n
102
TYR
398
Q
GLY
399
n
103
GLY
399
Q
GLY
400
n
104
GLY
400
Q
GLU
401
n
105
GLU
401
Q
ARG
402
n
106
ARG
402
Q
LEU
403
n
107
LEU
403
Q
LEU
404
n
108
LEU
404
Q
ASN
405
n
109
ASN
405
Q
PRO
406
n
110
PRO
406
Q
SER
407
n
111
SER
407
Q
PRO
408
n
112
PRO
408
Q
VAL
409
n
113
VAL
409
Q
GLU
410
n
114
GLU
410
Q
ASN
411
n
115
ASN
411
Q
ALA
412
n
116
ALA
412
Q
THR
413
n
117
THR
413
Q
LEU
414
n
118
LEU
414
Q
GLY
415
n
119
GLY
415
Q
VAL
416
n
120
VAL
416
Q
VAL
417
n
121
VAL
417
Q
VAL
418
n
122
VAL
418
Q
SER
419
n
123
SER
419
Q
VAL
420
n
124
VAL
420
Q
VAL
421
n
125
VAL
421
Q
ALA
422
n
126
ALA
422
Q
ILE
423
n
127
ILE
423
Q
VAL
424
n
128
VAL
424
Q
LEU
425
n
129
LEU
425
Q
THR
426
n
130
THR
426
Q
LEU
427
n
131
LEU
427
Q
ALA
428
n
132
ALA
428
Q
LEU
429
n
133
LEU
429
Q
VAL
430
n
134
VAL
430
Q
LEU
431
n
135
LEU
431
Q
LEU
432
n
136
LEU
432
Q
GLN
433
n
137
GLN
433
Q
LYS
434
n
138
LYS
434
Q
ARG
435
n
139
ARG
435
Q
ALA
436
n
140
ALA
436
Q
LEU
437
n
141
LEU
437
Q
ALA
438
n
142
ALA
438
Q
ALA
439
n
143
ALA
439
Q
THR
440
n
144
THR
440
Q
ASN
441
n
145
ASN
441
Q
SER
442
n
146
SER
442
Q
THR
443
n
147
THR
443
Q
VAL
444
n
148
VAL
444
Q
VAL
445
n
149
VAL
445
Q
GLU
446
n
150
GLU
446
Q
ALA
447
n
151
ALA
447
Q
ASP
448
n
152
ASP
448
Q
SER
449
n
153
SER
449
Q
LEU
450
n
154
LEU
450
Q
HIS
451
n
155
HIS
451
Q
TYR
452
n
156
TYR
452
Q
LYS
453
n
157
LYS
453
Q
SER
454
n
158
SER
454
Q
ASP
455
n
159
ASP
455
Q
LEU
456
n
160
LEU
456
Q
PHE
457
n
161
PHE
457
Q
LEU
458
n
162
LEU
458
Q
ASN
459
n
163
ASN
459
Q
ALA
460
n
164
ALA
460
Q
ALA
461
n
165
ALA
461
Q
VAL
462
n
166
VAL
462
Q
LEU
463
n
167
LEU
463
Q
LEU
464
n
168
LEU
464
Q
ALA
465
n
169
ALA
465
Q
LEU
466
n
170
LEU
466
Q
VAL
467
n
171
VAL
467
Q
LEU
468
n
172
LEU
468
Q
SER
469
n
173
SER
469
Q
GLN
470
n
174
GLN
470
Q
TYR
471
n
175
TYR
471
Q
GLY
472
n
176
GLY
472
Q
TRP
473
n
177
TRP
473
Q
TRP
474
n
178
TRP
474
Q
TRP
475
n
179
TRP
475
Q
ALA
476
n
180
ALA
476
Q
ASP
477
n
181
ASP
477
Q
GLY
478
n
182
GLY
478
Q
LEU
479
n
183
LEU
479
Q
PHE
480
n
184
PHE
480
Q
ALA
481
n
185
ALA
481
Q
VAL
482
n
186
VAL
482
Q
LEU
483
n
187
LEU
483
Q
ILE
484
n
188
ILE
484
Q
ALA
485
n
189
ALA
485
Q
CYS
486
n
190
CYS
486
Q
TYR
487
n
191
TYR
487
Q
ILE
488
n
192
ILE
488
Q
GLY
489
n
193
GLY
489
Q
GLN
490
n
194
GLN
490
Q
GLN
491
n
195
GLN
491
Q
ALA
492
n
196
ALA
492
Q
PHE
493
n
197
PHE
493
Q
ASP
494
n
198
ASP
494
Q
LEU
495
n
199
LEU
495
Q
GLY
496
n
200
GLY
496
Q
TYR
497
n
201
TYR
497
Q
ARG
498
n
202
ARG
498
Q
SER
499
n
203
SER
499
Q
ILE
500
n
204
ILE
500
Q
GLN
501
n
205
GLN
501
Q
ALA
502
n
206
ALA
502
Q
LEU
503
n
207
LEU
503
Q
LEU
504
n
208
LEU
504
Q
ASP
505
n
209
ASP
505
Q
ARG
506
n
210
ARG
506
Q
GLU
507
n
211
GLU
507
Q
LEU
508
n
212
LEU
508
Q
ASP
509
n
213
ASP
509
Q
GLU
510
n
214
GLU
510
Q
ASP
511
n
215
ASP
511
Q
THR
512
n
216
THR
512
Q
ARG
513
n
217
ARG
513
Q
GLN
514
n
218
GLN
514
Q
ARG
515
n
219
ARG
515
Q
ILE
516
n
220
ILE
516
Q
LYS
517
n
221
LYS
517
Q
LEU
518
n
222
LEU
518
Q
ILE
519
n
223
ILE
519
Q
ALA
520
n
224
ALA
520
Q
LYS
521
n
225
LYS
521
Q
GLU
522
n
226
GLU
522
Q
ASP
523
n
227
ASP
523
Q
PRO
524
n
228
PRO
524
Q
ARG
525
n
229
ARG
525
Q
VAL
526
n
230
VAL
526
Q
LEU
527
n
231
LEU
527
Q
GLY
528
n
232
GLY
528
Q
LEU
529
n
233
LEU
529
Q
HIS
530
n
234
HIS
530
Q
ASP
531
n
235
ASP
531
Q
LEU
532
n
236
LEU
532
Q
ARG
533
n
237
ARG
533
Q
THR
534
n
238
THR
534
Q
ARG
535
n
239
ARG
535
Q
GLN
536
n
240
GLN
536
Q
ALA
537
n
241
ALA
537
Q
GLY
538
n
242
GLY
538
Q
LYS
539
n
243
LYS
539
Q
THR
540
n
244
THR
540
Q
VAL
541
n
245
VAL
541
Q
PHE
542
n
246
PHE
542
Q
ILE
543
n
247
ILE
543
Q
GLN
544
n
248
GLN
544
Q
PHE
545
n
249
PHE
545
Q
HIS
546
n
250
HIS
546
Q
LEU
547
n
251
LEU
547
Q
GLU
548
n
252
GLU
548
Q
LEU
549
n
253
LEU
549
Q
ASP
550
n
254
ASP
550
Q
GLY
551
n
255
GLY
551
Q
ASN
552
n
256
ASN
552
Q
LEU
553
n
257
LEU
553
Q
SER
554
n
258
SER
554
Q
LEU
555
n
259
LEU
555
Q
ASN
556
n
260
ASN
556
Q
GLU
557
n
261
GLU
557
Q
ALA
558
n
262
ALA
558
Q
HIS
559
n
263
HIS
559
Q
SER
560
n
264
SER
560
Q
ILE
561
n
265
ILE
561
Q
THR
562
n
266
THR
562
Q
ASP
563
n
267
ASP
563
Q
THR
564
n
268
THR
564
Q
THR
565
n
269
THR
565
Q
GLY
566
n
270
GLY
566
Q
LEU
567
n
271
LEU
567
Q
ARG
568
n
272
ARG
568
Q
VAL
569
n
273
VAL
569
Q
LYS
570
n
274
LYS
570
Q
ALA
571
n
275
ALA
571
Q
ALA
572
n
276
ALA
572
Q
PHE
573
n
277
PHE
573
Q
GLU
574
n
278
GLU
574
Q
ASP
575
n
279
ASP
575
Q
ALA
576
n
280
ALA
576
Q
GLU
577
n
281
GLU
577
Q
VAL
578
n
282
VAL
578
Q
ILE
579
n
283
ILE
579
Q
ILE
580
n
284
ILE
580
Q
HIS
581
n
285
HIS
581
Q
GLN
582
n
286
GLN
582
Q
ASP
583
n
287
ASP
583
Q
PRO
584
n
288
PRO
584
Q
VAL
585
n
289
VAL
585
Q
GLN
586
n
290
GLN
586
Q
VAL
587
n
291
VAL
587
Q
GLU
588
n
292
GLU
588
Q
PRO
589
n
293
PRO
589
Q
THR
590
n
294
THR
590
Q
THR
591
n
295
THR
591
Q
GLN
592
n
296
GLN
592
Q
n
297
593
Q
n
298
594
Q
n
299
595
Q
n
300
596
Q
n
301
597
Q
n
302
598
Q
n
303
599
Q
n
304
600
Q
n
305
601
Q
n
306
602
Q
representative helical assembly
36
36-meric
helical asymmetric unit
2
dimeric
helical asymmetric unit, std helical frame
2
dimeric
1.00000000
0.00000000
0.00000000
0.00000000
0.00000000
-1.00000000
0.00000000
1.00000000
0.00000000
transform to helical frame
0.00000
0.00000
0.00000
-0.98228725
0.00000000
-0.18738131
0.00000000
1.00000000
0.00000000
0.18738131
0.00000000
-0.98228725
helical symmetry operation
0.00000
-51.30000
0.00000
0.65342060
0.00000000
-0.75699506
0.00000000
1.00000000
0.00000000
0.75699506
0.00000000
0.65342060
helical symmetry operation
0.00000
-51.30000
0.00000
0.32886665
0.00000000
0.94437637
0.00000000
1.00000000
0.00000000
-0.94437637
0.00000000
0.32886665
helical symmetry operation
0.00000
-51.30000
0.00000
-0.38751559
0.00000000
-0.92186315
0.00000000
1.00000000
0.00000000
0.92186315
0.00000000
-0.38751559
helical symmetry operation
0.00000
-34.20000
0.00000
0.99211470
0.00000000
0.12533323
0.00000000
1.00000000
0.00000000
-0.12533323
0.00000000
0.99211470
helical symmetry operation
0.00000
-34.20000
0.00000
-0.60459911
0.00000000
0.79652992
0.00000000
1.00000000
0.00000000
-0.79652992
0.00000000
-0.60459911
helical symmetry operation
0.00000
-34.20000
0.00000
0.55339155
0.00000000
-0.83292124
0.00000000
1.00000000
0.00000000
0.83292124
0.00000000
0.55339155
helical symmetry operation
0.00000
-17.10000
0.00000
0.44463518
0.00000000
0.89571176
0.00000000
1.00000000
0.00000000
-0.89571176
0.00000000
0.44463518
helical symmetry operation
0.00000
-17.10000
0.00000
-0.99802673
0.00000000
-0.06279052
0.00000000
1.00000000
0.00000000
0.06279052
0.00000000
-0.99802673
helical symmetry operation
0.00000
-17.10000
0.00000
1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
1_555
x,y,z
identity operation
0.00000
0.00000
0.00000
-0.50000000
0.00000000
0.86602540
0.00000000
1.00000000
0.00000000
-0.86602540
0.00000000
-0.50000000
helical symmetry operation
0.00000
0.00000
0.00000
-0.50000000
0.00000000
-0.86602540
0.00000000
1.00000000
0.00000000
0.86602540
0.00000000
-0.50000000
helical symmetry operation
0.00000
0.00000
0.00000
0.55339155
0.00000000
0.83292124
0.00000000
1.00000000
0.00000000
-0.83292124
0.00000000
0.55339155
helical symmetry operation
0.00000
17.10000
0.00000
-0.99802673
0.00000000
0.06279052
0.00000000
1.00000000
0.00000000
-0.06279052
0.00000000
-0.99802673
helical symmetry operation
0.00000
17.10000
0.00000
0.44463518
0.00000000
-0.89571176
0.00000000
1.00000000
0.00000000
0.89571176
0.00000000
0.44463518
helical symmetry operation
0.00000
17.10000
0.00000
-0.38751559
0.00000000
0.92186315
0.00000000
1.00000000
0.00000000
-0.92186315
0.00000000
-0.38751559
helical symmetry operation
0.00000
34.20000
0.00000
-0.60459911
0.00000000
-0.79652992
0.00000000
1.00000000
0.00000000
0.79652992
0.00000000
-0.60459911
helical symmetry operation
0.00000
34.20000
0.00000
0.99211470
0.00000000
-0.12533323
0.00000000
1.00000000
0.00000000
0.12533323
0.00000000
0.99211470
helical symmetry operation
0.00000
34.20000
0.00000
P
N
ARG
239
A
N
ARG
239
P
O
PHE
246
A
O
PHE
246
P
N
ILE
247
A
N
ILE
247
P
O
GLU
281
A
O
GLU
281
P
N
LEU
253
A
N
LEU
253
P
O
ASP
287
A
O
ASP
287
Q
N
ARG
535
B
N
ARG
239
Q
O
PHE
542
B
O
PHE
246
Q
N
ILE
543
B
N
ILE
247
Q
O
GLU
577
B
O
GLU
281
1
P
HIS
297
A
HIS
297
1
Y
1
P
HIS
298
A
HIS
298
1
Y
1
P
HIS
299
A
HIS
299
1
Y
1
P
HIS
300
A
HIS
300
1
Y
1
P
HIS
301
A
HIS
301
1
Y
1
P
HIS
302
A
HIS
302
1
Y
1
P
HIS
303
A
HIS
303
1
Y
1
P
HIS
304
A
HIS
304
1
Y
1
P
HIS
305
A
HIS
305
1
Y
1
P
HIS
306
A
HIS
306
1
Y
1
Q
HIS
593
B
HIS
297
1
Y
1
Q
HIS
594
B
HIS
298
1
Y
1
Q
HIS
595
B
HIS
299
1
Y
1
Q
HIS
596
B
HIS
300
1
Y
1
Q
HIS
597
B
HIS
301
1
Y
1
Q
HIS
598
B
HIS
302
1
Y
1
Q
HIS
599
B
HIS
303
1
Y
1
Q
HIS
600
B
HIS
304
1
Y
1
Q
HIS
601
B
HIS
305
1
Y
1
Q
HIS
602
B
HIS
306
1
Y
1
P
P
LEU
VAL
170
171
-135.53
1
P
P
SER
GLN
173
174
-140.53
1
P
P
ALA
GLU
280
281
144.60
1
Q
Q
THR
GLN
298
299
-149.63
1
Q
Q
ASP
LEU
531
532
142.48
1
P
TYR
102
0.094
SIDE CHAIN
1
P
ARG
139
0.171
SIDE CHAIN
1
P
TYR
191
0.072
SIDE CHAIN
1
P
ARG
210
0.187
SIDE CHAIN
1
P
ARG
217
0.141
SIDE CHAIN
1
P
ARG
219
0.107
SIDE CHAIN
1
P
ARG
237
0.083
SIDE CHAIN
1
P
ARG
239
0.086
SIDE CHAIN
1
P
ARG
272
0.165
SIDE CHAIN
1
Q
ARG
312
0.088
SIDE CHAIN
1
Q
HIS
373
0.105
SIDE CHAIN
1
Q
ARG
435
0.198
SIDE CHAIN
1
Q
TYR
452
0.143
SIDE CHAIN
1
Q
ARG
506
0.167
SIDE CHAIN
1
Q
ARG
535
0.089
SIDE CHAIN
1
-4.29
0.70
120.80
116.51
P
P
P
CB
CG
CD2
PHE
PHE
PHE
59
59
59
N
1
4.45
0.70
120.80
125.25
P
P
P
CB
CG
CD1
PHE
PHE
PHE
59
59
59
N
1
3.86
0.50
120.30
124.16
P
P
P
NE
CZ
NH1
ARG
ARG
ARG
219
219
219
N
1
3.41
0.50
120.30
123.71
P
P
P
NE
CZ
NH1
ARG
ARG
ARG
239
239
239
N
1
3.18
0.50
120.30
123.48
P
P
P
NE
CZ
NH1
ARG
ARG
ARG
272
272
272
N
1
3.82
0.50
120.30
124.12
Q
Q
Q
NE
CZ
NH1
ARG
ARG
ARG
402
402
402
N
1
-3.77
0.50
120.30
116.53
Q
Q
Q
NE
CZ
NH2
ARG
ARG
ARG
506
506
506
N
1
P
TYR
7
85.57
-71.90
1
P
PHE
9
54.57
-118.99
1
P
VAL
11
-63.63
79.60
1
P
ILE
26
-56.50
-7.77
1
P
ALA
32
-65.12
11.45
1
P
ASP
51
-28.27
-83.04
1
P
ASP
70
-46.69
164.86
1
P
HIS
71
-148.32
11.59
1
P
ARG
74
67.82
-22.29
1
P
HIS
77
-80.17
42.04
1
P
LEU
108
93.31
-17.41
1
P
PRO
112
-72.42
-169.62
1
P
THR
117
-164.32
-11.63
1
P
LEU
118
72.82
120.19
1
P
THR
144
173.36
94.48
1
P
LEU
160
-56.12
-5.03
1
P
VAL
171
50.77
-162.54
1
P
LEU
172
-32.91
135.12
1
P
TRP
178
67.62
-24.63
1
P
TRP
179
80.62
104.18
1
P
ASP
213
-53.59
173.21
1
P
LEU
233
117.94
86.56
1
P
ARG
237
-89.57
41.71
1
P
ALA
241
-163.91
114.24
1
P
ILE
247
-101.91
77.87
1
P
LEU
251
-162.08
106.81
1
Q
SER
301
-30.06
155.90
1
Q
TYR
303
-152.04
15.91
1
Q
ASP
304
39.31
174.38
1
Q
PHE
305
55.27
75.81
1
Q
LYS
308
-145.90
16.60
1
Q
ASP
366
-92.07
-103.80
1
Q
ARG
370
-4.86
-85.44
1
Q
HIS
373
-37.40
-22.30
1
Q
LEU
404
67.61
-13.94
1
Q
SER
407
142.45
150.28
1
Q
THR
413
47.63
-146.73
1
Q
VAL
416
-36.40
-24.03
1
Q
VAL
445
-162.74
-9.85
1
Q
LEU
463
-78.43
-146.57
1
Q
ALA
465
-141.84
11.03
1
Q
LEU
466
-145.30
-64.68
1
Q
ASP
505
-87.23
41.73
1
Q
ASP
509
-53.29
-169.67
1
Q
ALA
520
-80.51
36.06
1
Q
LYS
521
-149.71
17.49
1
Q
LEU
529
69.38
66.57
1
Q
LEU
532
-172.74
85.04
1
Q
LYS
539
-127.12
-95.85
1
Q
THR
540
3.84
107.21
1
Q
ASP
550
-34.81
132.57
0
4586
0
0
4586
Inward-Facing Conformation of the Zinc Transporter YiiP revealed by Cryo-electron Microscopy
1
N
N
1
N
N
THE SYMMETRY OF THE HELIX IS D3.
P
ALA
14
A
ALA
14
HELX_P
P
ILE
26
A
ILE
26
1
1
13
P
ILE
26
A
ILE
26
HELX_P
P
ALA
32
A
ALA
32
1
2
7
P
ALA
43
A
ALA
43
HELX_P
P
SER
48
A
SER
48
1
3
6
P
PHE
49
A
PHE
49
HELX_P
P
ILE
66
A
ILE
66
1
4
18
P
LYS
79
A
LYS
79
HELX_P
P
ARG
106
A
ARG
106
1
5
28
P
GLY
119
A
GLY
119
HELX_P
P
ALA
142
A
ALA
142
1
6
24
P
SER
146
A
SER
146
HELX_P
P
LEU
160
A
LEU
160
1
7
15
P
ALA
180
A
ALA
180
HELX_P
P
LEU
208
A
LEU
208
1
8
29
P
ASP
213
A
ASP
213
HELX_P
P
ASP
227
A
ASP
227
1
9
15
P
SER
258
A
SER
258
HELX_P
P
PHE
277
A
PHE
277
1
10
20
Q
ALA
310
B
ALA
14
HELX_P
Q
LEU
321
B
LEU
25
1
11
12
Q
LEU
321
B
LEU
25
HELX_P
Q
LEU
327
B
LEU
31
1
12
7
Q
LEU
338
B
LEU
42
HELX_P
Q
ASP
343
B
ASP
47
1
13
6
Q
ASP
343
B
ASP
47
HELX_P
Q
VAL
363
B
VAL
67
1
14
21
Q
GLY
372
B
GLY
76
HELX_P
Q
GLY
374
B
GLY
78
5
15
3
Q
LYS
375
B
LYS
79
HELX_P
Q
ARG
402
B
ARG
106
1
16
28
Q
VAL
416
B
VAL
120
HELX_P
Q
THR
440
B
THR
144
1
17
25
Q
GLU
446
B
GLU
150
HELX_P
Q
PHE
457
B
PHE
161
1
18
12
Q
ASP
477
B
ASP
181
HELX_P
Q
LEU
504
B
LEU
208
1
19
28
Q
GLU
510
B
GLU
214
HELX_P
Q
ALA
520
B
ALA
224
1
20
11
Q
SER
554
B
SER
258
HELX_P
Q
PHE
573
B
PHE
277
1
21
20
METAL TRANSPORT
zinc transporter, secondary transporter, alternating access mechanism, METAL TRANSPORT, Structural Genomics, PSI-Biology, Transcontinental EM Initiative for Membrane Protein Structure, TEMIMPS
Q8E919_SHEON
UNP
1
1
Q8E919
MTQTSQYDFWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKA
EPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDL
FLNAAVLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQ
AGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQVEPTTQ
1
296
3J1Z
1
296
Q8E919
P
1
1
296
1
296
3J1Z
297
592
Q8E919
Q
1
1
296
1
expression tag
HIS
297
3J1Z
P
Q8E919
UNP
297
1
expression tag
HIS
298
3J1Z
P
Q8E919
UNP
298
1
expression tag
HIS
299
3J1Z
P
Q8E919
UNP
299
1
expression tag
HIS
300
3J1Z
P
Q8E919
UNP
300
1
expression tag
HIS
301
3J1Z
P
Q8E919
UNP
301
1
expression tag
HIS
302
3J1Z
P
Q8E919
UNP
302
1
expression tag
HIS
303
3J1Z
P
Q8E919
UNP
303
1
expression tag
HIS
304
3J1Z
P
Q8E919
UNP
304
1
expression tag
HIS
305
3J1Z
P
Q8E919
UNP
305
1
expression tag
HIS
306
3J1Z
P
Q8E919
UNP
306
2
expression tag
HIS
593
3J1Z
Q
Q8E919
UNP
297
2
expression tag
HIS
594
3J1Z
Q
Q8E919
UNP
298
2
expression tag
HIS
595
3J1Z
Q
Q8E919
UNP
299
2
expression tag
HIS
596
3J1Z
Q
Q8E919
UNP
300
2
expression tag
HIS
597
3J1Z
Q
Q8E919
UNP
301
2
expression tag
HIS
598
3J1Z
Q
Q8E919
UNP
302
2
expression tag
HIS
599
3J1Z
Q
Q8E919
UNP
303
2
expression tag
HIS
600
3J1Z
Q
Q8E919
UNP
304
2
expression tag
HIS
601
3J1Z
Q
Q8E919
UNP
305
2
expression tag
HIS
602
3J1Z
Q
Q8E919
UNP
306
3
2
3
anti-parallel
parallel
parallel
anti-parallel
parallel
P
ARG
239
A
ARG
239
P
ALA
241
A
ALA
241
P
THR
244
A
THR
244
P
PHE
249
A
PHE
249
P
GLU
281
A
GLU
281
P
ILE
284
A
ILE
284
P
GLU
252
A
GLU
252
P
LEU
253
A
LEU
253
P
ASP
287
A
ASP
287
P
PRO
288
A
PRO
288
Q
ARG
533
B
ARG
237
Q
GLN
536
B
GLN
240
Q
VAL
541
B
VAL
245
Q
PHE
545
B
PHE
249
Q
GLU
577
B
GLU
281
Q
ILE
580
B
ILE
284
1
P 1