0.022999
0.000000
0.000000
0.000000
0.010679
0.000000
0.000000
0.000000
0.006425
0.000000
0.000000
0.000000
Stella, S.
Cascio, D.
Johnson, R.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
43.480
93.640
155.630
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
N
C
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
Y
90
N
C
N
91
N
N
Y
92
N
N
Y
93
N
C
Y
94
N
N
Y
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
O
N
111
N
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
C
N
116
R
C
N
117
N
O
N
118
S
C
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
N
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
C
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
P
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
C
N
150
R
C
N
151
N
O
N
152
S
C
N
153
N
O
N
154
N
C
N
155
R
C
Y
156
N
N
Y
157
N
C
Y
158
N
N
Y
159
N
C
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
C
N
164
N
N
N
165
N
N
Y
166
N
C
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
O
N
189
S
C
N
190
N
O
N
191
N
C
N
192
R
C
N
193
N
N
N
194
N
C
N
195
N
O
N
196
N
N
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
N
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
O
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
S
C
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
C
N
321
N
N
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
C
N
344
N
S
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
N
386
N
C
N
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
N
403
N
O
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
R
C
N
417
N
O
N
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
N
N
430
S
C
N
431
N
C
N
432
N
O
N
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
N
440
N
O
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
N
N
454
S
C
N
455
N
C
N
456
N
O
N
457
N
C
N
458
N
C
N
459
N
C
N
460
N
O
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
Y
93
N
sing
Y
94
N
sing
Y
95
N
doub
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
doub
N
102
N
sing
N
103
N
sing
Y
104
N
sing
Y
105
N
doub
N
106
N
sing
Y
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
Y
166
N
sing
Y
167
N
sing
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
doub
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
Y
432
N
doub
Y
433
N
sing
Y
434
N
sing
N
435
N
sing
Y
436
N
doub
N
437
N
sing
Y
438
N
doub
N
439
N
sing
Y
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
doub
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
US
Genes Dev.
GEDEEP
2056
0890-9369
24
814
826
10.1101/gad.1900610
20395367
The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
2010
10.2210/pdb3jrc/pdb
pdb_00003jrc
100
1
CCD
2007-01-01
ADSC QUANTUM 315
Si (111)
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
8.2.2
ALS
1.000
SYNCHROTRON
ALS BEAMLINE 8.2.2
11252.918
DNA-binding protein fis
2
man
polymer
8361.404
DNA (27-MER)
1
syn
polymer
8228.350
DNA (27-MER)
1
syn
polymer
18.015
water
2
nat
water
no
no
MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALM
MGINRGTLRKKLKKYGMN
MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALM
MGINRGTLRKKLKKYGMN
A,B
polypeptide(L)
no
no
(DA)(DA)(DA)(DT)(DT)(DT)(DG)(DT)(DT)(DT)(DG)(DG)(DG)(DC)(DG)(DC)(DT)(DG)(DA)(DG)
(DC)(DA)(DA)(DA)(DT)(DT)(DT)
AAATTTGTTTGGGCGCTGAGCAAATTT
C
polydeoxyribonucleotide
no
no
(DA)(DA)(DA)(DT)(DT)(DT)(DG)(DC)(DT)(DC)(DA)(DG)(DC)(DG)(DC)(DC)(DC)(DA)(DA)(DA)
(DC)(DA)(DA)(DA)(DT)(DT)(DT)
AAATTTGCTCAGCGCCCAAACAAATTT
D
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
K-12
sample
fis, b3261, JW3229
83333
Escherichia coli
469008
Escherichia coli
BL21(DE3)
plasmid
pET11a
1
4.05
69.64
VAPOR DIFFUSION, HANGING DROP
8.5
0.25 M Sodium citrate, 0.1 M TRIS-HCl pH 8.5, 40% PEG 400, vapor diffusion, hanging drop, temperature 277K
277
12.392
1
20
C
1
D
27
-4.853
C_DA1:DT27_D
1
-5.388
-1.134
0.237
-0.238
9.995
1
20
C
2
D
26
5.587
C_DA2:DT26_D
2
-15.189
-0.526
0.096
0.084
8.626
1
20
C
3
D
25
1.204
C_DA3:DT25_D
3
-12.982
-0.179
0.553
-0.194
1.851
1
20
C
4
D
24
1.848
C_DT4:DA24_D
4
-14.930
0.371
0.730
-0.084
-8.270
1
20
C
5
D
23
-0.890
C_DT5:DA23_D
5
-18.579
0.205
0.767
-0.149
-15.433
1
20
C
6
D
22
-3.991
C_DT6:DA22_D
6
-17.651
0.451
0.660
-0.436
5.379
1
19
C
7
D
21
0.728
C_DG7:DC21_D
7
-7.460
-0.755
0.806
-0.482
-12.536
1
20
C
8
D
20
-1.475
C_DT8:DA20_D
8
-14.051
0.100
0.409
-0.093
-8.325
1
20
C
9
D
19
-1.401
C_DT9:DA19_D
9
-3.857
-0.180
0.547
0.094
-5.753
1
20
C
10
D
18
1.089
C_DT10:DA18_D
10
-9.045
0.202
-0.273
0.121
17.005
1
C
11
D
17
18.405
C_DG11:DC17_D
11
-12.735
0.442
0.295
0.320
9.486
1
19
C
12
D
16
2.742
C_DG12:DC16_D
12
-4.184
-0.170
0.464
0.049
10.584
1
19
C
13
D
15
0.615
C_DG13:DC15_D
13
-8.679
-0.790
0.179
-0.411
8.417
1
19
C
14
D
14
4.805
C_DC14:DG14_D
14
-22.901
-0.067
0.093
-0.189
-14.530
1
19
C
15
D
13
-2.125
C_DG15:DC13_D
15
-9.666
-0.918
-0.181
-0.532
-7.853
1
19
C
16
D
12
-6.581
C_DC16:DG12_D
16
-4.118
0.019
0.454
-0.225
-11.969
1
20
C
17
D
11
6.793
C_DT17:DA11_D
17
-17.975
-0.088
0.520
0.065
-9.991
1
19
C
18
D
10
2.681
C_DG18:DC10_D
18
-14.303
-0.338
-1.365
-0.257
-1.212
1
20
C
19
D
9
1.464
C_DA19:DT9_D
19
-7.269
-0.669
-0.106
-0.236
6.563
1
19
C
20
D
8
8.583
C_DG20:DC8_D
20
5.590
-1.448
0.478
-0.322
-7.670
1
19
C
21
D
7
6.054
C_DC21:DG7_D
21
2.665
1.180
1.055
-0.451
19.068
1
C
22
D
6
2.798
C_DA22:DT6_D
22
-18.434
-0.877
0.830
-0.031
10.005
1
20
C
23
D
5
2.087
C_DA23:DT5_D
23
-19.866
-0.348
0.334
0.166
4.363
1
20
C
24
D
4
-0.581
C_DA24:DT4_D
24
-20.264
0.062
-0.064
0.021
-0.733
1
20
C
25
D
3
-1.167
C_DT25:DA3_D
25
-20.492
0.499
-0.102
-0.242
-7.222
1
20
C
26
D
2
1.111
C_DT26:DA2_D
26
-13.638
-0.184
-0.064
-0.100
-11.631
1
C
27
D
1
2.509
C_DT27:DA1_D
27
-13.055
1.163
0.786
-0.054
3.252
42.179
C
C
1
2
-5.809
D
D
27
26
3.246
-4.170
0.236
-0.130
CC_DA1DA2:DT26DT27_DD
1
3.383
-4.712
41.851
0.248
0.019
3.115
40.242
C
C
2
3
-10.281
D
D
26
25
3.168
-7.028
0.065
-0.086
CC_DA2DA3:DT25DT26_DD
2
-4.122
6.030
39.442
0.648
-0.548
3.478
38.235
C
C
3
4
-6.148
D
D
25
24
3.422
-4.019
0.183
-0.856
CC_DA3DT4:DA24DT25_DD
3
-1.925
2.946
37.984
-0.772
-0.535
3.431
35.797
C
C
4
5
-1.501
D
D
24
23
3.416
-0.922
-0.033
-0.655
CC_DT4DT5:DA23DA24_DD
4
0.570
-0.927
35.781
-0.927
0.139
3.369
39.797
C
C
5
6
-5.013
D
D
23
22
3.357
-3.408
-0.328
-0.266
CC_DT5DT6:DA22DA23_DD
5
-0.099
0.145
39.656
0.015
0.470
2.648
26.826
C
C
6
7
-4.146
D
D
22
21
2.785
-1.914
0.616
0.029
CC_DT6DG7:DC21DA22_DD
6
-4.199
9.095
26.433
0.475
-2.235
3.696
34.297
C
C
7
8
6.076
D
D
21
20
3.787
3.569
0.145
-0.626
CC_DG7DT8:DA20DC21_DD
7
4.049
-6.893
33.882
-1.707
0.485
2.779
31.107
C
C
8
9
18.852
D
D
20
19
3.254
9.936
-0.113
-0.968
CC_DT8DT9:DA19DA20_DD
8
1.669
-3.167
29.468
-3.608
0.513
2.872
37.445
C
C
9
10
10.131
D
D
19
18
3.078
6.424
-0.012
-0.547
CC_DT9DT10:DA18DA19_DD
9
8.142
-12.839
36.029
-1.636
1.011
3.001
34.617
C
C
10
11
17.705
D
D
18
17
2.925
10.362
0.888
1.083
CC_DT10DG11:DC17DA18_DD
10
-3.793
6.480
32.862
0.333
-2.037
3.530
31.283
C
C
11
12
-2.807
D
D
17
16
3.340
-1.506
-1.427
-0.118
CC_DG11DG12:DC16DC17_DD
11
-5.207
9.703
30.822
0.084
1.605
3.317
30.760
C
C
12
13
0.940
D
D
16
15
3.313
0.498
0.261
-0.355
CC_DG12DG13:DC15DC16_DD
12
2.927
-5.526
30.620
-0.767
0.089
3.313
45.020
C
C
13
14
-5.872
D
D
15
14
3.392
-4.484
0.206
0.739
CC_DG13DC14:DG14DC15_DD
13
3.825
-5.009
44.652
1.380
0.085
3.918
39.272
C
C
14
15
4.188
D
D
14
13
3.873
2.812
-0.179
0.838
CC_DC14DG15:DC13DG14_DD
14
0.669
-0.997
39.170
0.848
0.361
3.279
37.903
C
C
15
16
-10.682
D
D
13
12
3.278
-6.864
-0.681
0.098
CC_DG15DC16:DG12DC13_DD
15
-7.127
11.092
36.635
1.049
0.117
3.190
35.433
C
C
16
17
4.936
D
D
12
11
3.194
2.998
1.142
-0.860
CC_DC16DT17:DA11DG12_DD
16
2.756
-4.537
35.205
-1.844
-1.480
3.389
39.027
C
C
17
18
22.379
D
D
11
10
3.399
14.150
0.137
1.356
CC_DT17DG18:DC10DA11_DD
17
16.575
-26.214
32.574
0.082
2.078
2.692
30.833
C
C
18
19
14.065
D
D
10
9
3.025
7.158
-0.165
-0.076
CC_DG18DA19:DT9DC10_DD
18
-13.609
26.742
26.807
-1.451
-2.179
2.997
26.710
C
C
19
20
1.298
D
D
9
8
3.150
0.597
0.709
-0.789
CC_DA19DG20:DC8DT9_DD
19
-3.900
8.471
26.423
-1.856
-2.495
3.463
44.154
C
C
20
21
12.565
D
D
8
7
3.670
9.368
0.154
-0.512
CC_DG20DC21:DG7DC8_DD
20
-4.020
5.393
43.018
-1.652
-0.622
2.275
28.484
C
C
21
22
3.345
D
D
7
6
2.415
1.633
-0.389
-0.012
CC_DC21DA22:DT6DG7_DD
21
6.089
-12.475
27.792
-0.295
1.802
3.414
38.610
C
C
22
23
-5.676
D
D
6
5
3.424
-3.739
0.053
-0.238
CC_DA22DA23:DT5DT6_DD
22
4.676
-7.099
38.160
0.124
0.525
3.360
37.899
C
C
23
24
-1.410
D
D
5
4
3.364
-0.915
-0.207
-0.447
CC_DA23DA24:DT4DT5_DD
23
1.912
-2.945
37.842
-0.568
0.570
3.369
37.333
C
C
24
25
-4.659
D
D
4
3
3.338
-2.979
0.108
-0.509
CC_DA24DT25:DA3DT4_DD
24
1.160
-1.815
37.200
-0.391
-0.011
3.290
34.773
C
C
25
26
-0.193
D
D
3
2
3.287
-0.115
-0.190
-0.387
CC_DT25DT26:DA2DA3_DD
25
-0.174
0.290
34.773
-0.630
0.290
3.403
45.235
C
C
26
27
-8.773
D
D
2
1
3.456
-6.695
0.185
-0.408
CC_DT26DT27:DA1DA2_DD
26
-7.727
10.124
44.124
0.104
-0.972
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Advisory
Source and taxonomy
Version format compliance
Refinement description
Data collection
Database references
Refinement description
1
0
2010-04-28
1
1
2011-07-13
1
2
2017-11-01
1
3
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2009-09-08
REL
REL
HOH
water
3IV5
PDB
experimental model
HOH
1
4
HOH
HOH
99
A
HOH
2
4
HOH
HOH
28
C
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
ALA
8
n
8
SER
8
A
ASP
9
n
9
ASP
9
A
ALA
10
n
10
VAL
10
A
LEU
11
n
11
LEU
11
A
THR
12
n
12
THR
12
A
VAL
13
n
13
VAL
13
A
SER
14
n
14
SER
14
A
THR
15
n
15
THR
15
A
VAL
16
n
16
VAL
16
A
ASN
17
n
17
ASN
17
A
SER
18
n
18
SER
18
A
GLN
19
n
19
GLN
19
A
ASP
20
n
20
ASP
20
A
GLN
21
n
21
GLN
21
A
VAL
22
n
22
VAL
22
A
THR
23
n
23
THR
23
A
GLN
24
n
24
GLN
24
A
LYS
25
n
25
LYS
25
A
PRO
26
n
26
PRO
26
A
LEU
27
n
27
LEU
27
A
ARG
28
n
28
ARG
28
A
ASP
29
n
29
ASP
29
A
SER
30
n
30
SER
30
A
VAL
31
n
31
VAL
31
A
LYS
32
n
32
LYS
32
A
GLN
33
n
33
GLN
33
A
ALA
34
n
34
ALA
34
A
LEU
35
n
35
LEU
35
A
LYS
36
n
36
LYS
36
A
ASN
37
n
37
ASN
37
A
TYR
38
n
38
TYR
38
A
PHE
39
n
39
PHE
39
A
ALA
40
n
40
ALA
40
A
GLN
41
n
41
GLN
41
A
LEU
42
n
42
LEU
42
A
ASN
43
n
43
ASN
43
A
GLY
44
n
44
GLY
44
A
GLN
45
n
45
GLN
45
A
ASP
46
n
46
ASP
46
A
VAL
47
n
47
VAL
47
A
ASN
48
n
48
ASN
48
A
ASP
49
n
49
ASP
49
A
LEU
50
n
50
LEU
50
A
TYR
51
n
51
TYR
51
A
GLU
52
n
52
GLU
52
A
LEU
53
n
53
LEU
53
A
VAL
54
n
54
VAL
54
A
LEU
55
n
55
LEU
55
A
ALA
56
n
56
ALA
56
A
GLU
57
n
57
GLU
57
A
VAL
58
n
58
VAL
58
A
GLU
59
n
59
GLU
59
A
GLN
60
n
60
GLN
60
A
PRO
61
n
61
PRO
61
A
LEU
62
n
62
LEU
62
A
LEU
63
n
63
LEU
63
A
ASP
64
n
64
ASP
64
A
MET
65
n
65
MET
65
A
VAL
66
n
66
VAL
66
A
MET
67
n
67
MET
67
A
GLN
68
n
68
GLN
68
A
TYR
69
n
69
TYR
69
A
THR
70
n
70
THR
70
A
ARG
71
n
71
ARG
71
A
GLY
72
n
72
GLY
72
A
ASN
73
n
73
ASN
73
A
GLN
74
n
74
GLN
74
A
THR
75
n
75
THR
75
A
ARG
76
n
76
ARG
76
A
ALA
77
n
77
ALA
77
A
ALA
78
n
78
ALA
78
A
LEU
79
n
79
LEU
79
A
MET
80
n
80
MET
80
A
MET
81
n
81
MET
81
A
GLY
82
n
82
GLY
82
A
ILE
83
n
83
ILE
83
A
ASN
84
n
84
ASN
84
A
ARG
85
n
85
ARG
85
A
GLY
86
n
86
GLY
86
A
THR
87
n
87
THR
87
A
LEU
88
n
88
LEU
88
A
ARG
89
n
89
ARG
89
A
LYS
90
n
90
LYS
90
A
LYS
91
n
91
LYS
91
A
LEU
92
n
92
LEU
92
A
LYS
93
n
93
LYS
93
A
LYS
94
n
94
LYS
94
A
TYR
95
n
95
TYR
95
A
GLY
96
n
96
GLY
96
A
MET
97
n
97
MET
97
A
ASN
98
n
98
ASN
98
A
MET
1
n
1
MET
1
B
PHE
2
n
2
PHE
2
B
GLU
3
n
3
GLU
3
B
GLN
4
n
4
GLN
4
B
ARG
5
n
5
ARG
5
B
VAL
6
n
6
VAL
6
B
ASN
7
n
7
ASN
7
B
SER
8
n
8
SER
8
B
ASP
9
n
9
ASP
9
B
VAL
10
n
10
VAL
10
B
LEU
11
n
11
LEU
11
B
THR
12
n
12
THR
12
B
VAL
13
n
13
VAL
13
B
SER
14
n
14
SER
14
B
THR
15
n
15
THR
15
B
VAL
16
n
16
VAL
16
B
ASN
17
n
17
ASN
17
B
SER
18
n
18
SER
18
B
GLN
19
n
19
GLN
19
B
ASP
20
n
20
ASP
20
B
GLN
21
n
21
GLN
21
B
VAL
22
n
22
VAL
22
B
THR
23
n
23
THR
23
B
GLN
24
n
24
GLN
24
B
LYS
25
n
25
LYS
25
B
PRO
26
n
26
PRO
26
B
LEU
27
n
27
LEU
27
B
ARG
28
n
28
ARG
28
B
ASP
29
n
29
ASP
29
B
SER
30
n
30
SER
30
B
VAL
31
n
31
VAL
31
B
LYS
32
n
32
LYS
32
B
GLN
33
n
33
GLN
33
B
ALA
34
n
34
ALA
34
B
LEU
35
n
35
LEU
35
B
LYS
36
n
36
LYS
36
B
ASN
37
n
37
ASN
37
B
TYR
38
n
38
TYR
38
B
PHE
39
n
39
PHE
39
B
ALA
40
n
40
ALA
40
B
GLN
41
n
41
GLN
41
B
LEU
42
n
42
LEU
42
B
ASN
43
n
43
ASN
43
B
GLY
44
n
44
GLY
44
B
GLN
45
n
45
GLN
45
B
ASP
46
n
46
ASP
46
B
VAL
47
n
47
VAL
47
B
ASN
48
n
48
ASN
48
B
ASP
49
n
49
ASP
49
B
LEU
50
n
50
LEU
50
B
TYR
51
n
51
TYR
51
B
GLU
52
n
52
GLU
52
B
LEU
53
n
53
LEU
53
B
VAL
54
n
54
VAL
54
B
LEU
55
n
55
LEU
55
B
ALA
56
n
56
ALA
56
B
GLU
57
n
57
GLU
57
B
VAL
58
n
58
VAL
58
B
GLU
59
n
59
GLU
59
B
GLN
60
n
60
GLN
60
B
PRO
61
n
61
PRO
61
B
LEU
62
n
62
LEU
62
B
LEU
63
n
63
LEU
63
B
ASP
64
n
64
ASP
64
B
MET
65
n
65
MET
65
B
VAL
66
n
66
VAL
66
B
MET
67
n
67
MET
67
B
GLN
68
n
68
GLN
68
B
TYR
69
n
69
TYR
69
B
THR
70
n
70
THR
70
B
ARG
71
n
71
ARG
71
B
GLY
72
n
72
GLY
72
B
ASN
73
n
73
ASN
73
B
GLN
74
n
74
GLN
74
B
THR
75
n
75
THR
75
B
ARG
76
n
76
ARG
76
B
ALA
77
n
77
ALA
77
B
ALA
78
n
78
ALA
78
B
LEU
79
n
79
LEU
79
B
MET
80
n
80
MET
80
B
MET
81
n
81
MET
81
B
GLY
82
n
82
GLY
82
B
ILE
83
n
83
ILE
83
B
ASN
84
n
84
ASN
84
B
ARG
85
n
85
ARG
85
B
GLY
86
n
86
GLY
86
B
THR
87
n
87
THR
87
B
LEU
88
n
88
LEU
88
B
ARG
89
n
89
ARG
89
B
LYS
90
n
90
LYS
90
B
LYS
91
n
91
LYS
91
B
LEU
92
n
92
LEU
92
B
LYS
93
n
93
LYS
93
B
LYS
94
n
94
LYS
94
B
TYR
95
n
95
TYR
95
B
GLY
96
n
96
GLY
96
B
MET
97
n
97
MET
97
B
ASN
98
n
98
ASN
98
B
DA
1
n
1
DA
1
C
DA
2
n
2
DA
2
C
DA
3
n
3
DA
3
C
DT
4
n
4
DT
4
C
DT
5
n
5
DT
5
C
DT
6
n
6
DT
6
C
DG
7
n
7
DG
7
C
DT
8
n
8
DT
8
C
DT
9
n
9
DT
9
C
DT
10
n
10
DT
10
C
DG
11
n
11
DG
11
C
DG
12
n
12
DG
12
C
DG
13
n
13
DG
13
C
DC
14
n
14
DC
14
C
DG
15
n
15
DG
15
C
DC
16
n
16
DC
16
C
DT
17
n
17
DT
17
C
DG
18
n
18
DG
18
C
DA
19
n
19
DA
19
C
DG
20
n
20
DG
20
C
DC
21
n
21
DC
21
C
DA
22
n
22
DA
22
C
DA
23
n
23
DA
23
C
DA
24
n
24
DA
24
C
DT
25
n
25
DT
25
C
DT
26
n
26
DT
26
C
DT
27
n
27
DT
27
C
DA
1
n
1
DA
1
D
DA
2
n
2
DA
2
D
DA
3
n
3
DA
3
D
DT
4
n
4
DT
4
D
DT
5
n
5
DT
5
D
DT
6
n
6
DT
6
D
DG
7
n
7
DG
7
D
DC
8
n
8
DC
8
D
DT
9
n
9
DT
9
D
DC
10
n
10
DC
10
D
DA
11
n
11
DA
11
D
DG
12
n
12
DG
12
D
DC
13
n
13
DC
13
D
DG
14
n
14
DG
14
D
DC
15
n
15
DC
15
D
DC
16
n
16
DC
16
D
DC
17
n
17
DC
17
D
DA
18
n
18
DA
18
D
DA
19
n
19
DA
19
D
DA
20
n
20
DA
20
D
DC
21
n
21
DC
21
D
DA
22
n
22
DA
22
D
DA
23
n
23
DA
23
D
DA
24
n
24
DA
24
D
DT
25
n
25
DT
25
D
DT
26
n
26
DT
26
D
DT
27
n
27
DT
27
D
1.5643
-1.1898
0.0405
5.3492
0.4875
4.6093
-0.1496
-0.2332
-0.0189
0.4528
0.1813
-0.2202
0.7015
0.1092
-0.0317
-0.1580
-0.0257
0.0121
0.0525
-0.0283
-0.2381
refined
12.9980
10.6433
8.7646
X-RAY DIFFRACTION
3.3301
0.7535
0.0705
5.6122
0.0218
4.0911
-0.0016
-0.2988
-0.0025
0.1235
0.0115
0.0334
0.3470
-0.0473
-0.0099
-0.2580
-0.0094
0.0233
-0.0139
-0.0106
-0.2356
refined
9.8895
11.0945
2.0211
X-RAY DIFFRACTION
1.3443
0.1768
2.9287
0.7590
0.7678
7.4739
0.7700
-0.0846
-0.8704
0.2719
0.3857
0.0644
1.8980
0.4254
-1.1557
0.6502
0.0463
-0.0798
0.2939
0.0638
0.1004
refined
11.6810
-10.1914
5.1350
X-RAY DIFFRACTION
1.1217
0.2108
2.5552
0.4227
0.8636
10.6481
0.6152
-0.0848
-0.8449
0.2257
0.3870
-0.0149
1.9384
0.0740
-1.0023
0.6623
0.0394
-0.1218
0.1858
-0.0528
0.0694
refined
10.7747
-10.1587
5.6939
X-RAY DIFFRACTION
A
8
A
98
X-RAY DIFFRACTION
1
B
1
B
98
X-RAY DIFFRACTION
2
C
1
C
27
X-RAY DIFFRACTION
3
D
1
D
27
X-RAY DIFFRACTION
4
author_and_software_defined_assembly
PISA
4
tetrameric
8710
-64
19150
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
15
A
N
THR
15
A
O
THR
23
A
O
THR
23
B
N
THR
15
B
N
THR
15
B
O
THR
23
B
O
THR
23
1
A
OG
SER
8
A
OG
SER
8
1
Y
1
A
CG1
VAL
10
A
CG1
VAL
10
1
Y
1
A
CG2
VAL
10
A
CG2
VAL
10
1
Y
1
B
O
VAL
10
B
O
VAL
10
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
PHE
2
A
PHE
2
1
Y
1
A
GLU
3
A
GLU
3
1
Y
1
A
GLN
4
A
GLN
4
1
Y
1
A
ARG
5
A
ARG
5
1
Y
1
A
VAL
6
A
VAL
6
1
Y
1
A
ASN
7
A
ASN
7
1
Y
1
5.54
0.30
108.30
113.84
C
C
C
O4'
C1'
N9
DA
DA
DA
1
1
1
N
1
8.69
1.20
119.70
128.39
C
C
C
C3'
O3'
P
DA
DA
DA
1
1
2
Y
1
6.50
0.30
108.30
114.80
C
C
C
O4'
C1'
N9
DG
DG
DG
7
7
7
N
1
1.91
0.30
108.30
110.21
C
C
C
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
2.78
0.30
108.30
111.08
C
C
C
O4'
C1'
N1
DT
DT
DT
9
9
9
N
1
3.92
0.30
108.30
112.22
C
C
C
O4'
C1'
N9
DG
DG
DG
13
13
13
N
1
1.87
0.30
108.30
110.17
C
C
C
O4'
C1'
N1
DC
DC
DC
14
14
14
N
1
10.76
1.20
119.70
130.46
C
C
C
C3'
O3'
P
DC
DC
DG
14
14
15
Y
1
3.00
0.30
108.30
111.30
C
C
C
O4'
C1'
N1
DC
DC
DC
16
16
16
N
1
1.99
0.30
108.30
110.29
C
C
C
O4'
C1'
N9
DA
DA
DA
19
19
19
N
1
1.94
0.30
108.30
110.24
D
D
D
O4'
C1'
N9
DA
DA
DA
1
1
1
N
1
2.33
0.30
108.30
110.63
D
D
D
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
2.42
0.30
108.30
110.72
D
D
D
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
7.50
1.20
119.70
127.20
D
D
D
C3'
O3'
P
DG
DG
DC
12
12
13
Y
1
2.87
0.30
108.30
111.17
D
D
D
O4'
C1'
N1
DC
DC
DC
13
13
13
N
1
2.56
0.30
108.30
110.86
D
D
D
O4'
C1'
N1
DC
DC
DC
21
21
21
N
1
A
ASP
9
-160.37
108.27
1
B
THR
23
-102.45
-169.47
1
B
ASP
49
-151.17
6.74
1
B
MET
97
-108.32
50.35
69.92
63.353
53.67
0.941
0.909
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.270
0.230
0.232
3.080
80.320
488
10306
4.700
83.290
1.00
1.00
0.367
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.463
0.800
0.800
1.400
3IV5
MAXIMUM LIKELIHOOD
MASK
3.080
80.320
2
2604
0
1101
1501
0.007
0.022
2748
0.009
0.020
1520
1.215
2.471
3936
0.971
3.000
3777
5.252
5.000
187
39.028
25.600
75
18.037
15.000
301
19.213
15.000
11
0.052
0.200
449
0.003
0.020
2211
0.001
0.020
274
0.191
0.200
610
0.199
0.200
1697
0.200
0.200
1222
0.081
0.200
1090
0.122
0.200
45
0.099
0.200
11
0.137
0.200
28
0.152
0.200
5
0.355
1.500
1232
0.024
1.500
382
0.249
2.000
1506
0.514
3.000
2383
0.627
4.500
2430
0.297
0.332
3.161
3
78
81
20
9.180
3.100
90.000
3JRC
11654
0.144
1.565
1
8.400
8.000
93.100
0.626
3.10
3.21
735
1.242
1
4.50
61.20
0.435
3.21
3.34
965
1.414
1
5.40
78.50
0.418
3.34
3.49
1124
1.477
1
6.30
92.10
0.417
3.49
3.68
1214
1.305
1
7.90
98.00
0.334
3.68
3.91
1222
1.355
1
8.80
99.80
0.254
3.91
4.21
1224
1.452
1
9.10
100.00
0.175
4.21
4.63
1252
1.590
1
8.90
100.00
0.149
4.63
5.30
1261
1.566
1
8.30
100.00
0.141
5.30
6.68
1275
1.723
1
7.80
99.90
0.094
6.68
90.00
1382
2.010
1
10.30
99.40
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.2.0019
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.005
phasing
PHASER
Crystal structure of Fis bound to 27 bp DNA F29 containing 5 G/Cs at center
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
biological unit is the same as asymmetric unit
A
LEU
27
A
LEU
27
HELX_P
A
LEU
42
A
LEU
42
1
1
16
A
ASP
49
A
ASP
49
HELX_P
A
THR
70
A
THR
70
1
2
22
A
ASN
73
A
ASN
73
HELX_P
A
MET
81
A
MET
81
1
3
9
A
ASN
84
A
ASN
84
HELX_P
A
TYR
95
A
TYR
95
1
4
12
B
VAL
6
B
VAL
6
HELX_P
B
VAL
10
B
VAL
10
5
5
5
B
LEU
27
B
LEU
27
HELX_P
B
LEU
42
B
LEU
42
1
6
16
B
ASP
49
B
ASP
49
HELX_P
B
THR
70
B
THR
70
1
7
22
B
ASN
73
B
ASN
73
HELX_P
B
GLY
82
B
GLY
82
1
8
10
B
ASN
84
B
ASN
84
HELX_P
B
TYR
95
B
TYR
95
1
9
12
hydrog
WATSON-CRICK
C
DA
1
C
N1
DA
1
1_555
D
DT
27
D
N3
DT
27
1_555
hydrog
WATSON-CRICK
C
DA
1
C
N6
DA
1
1_555
D
DT
27
D
O4
DT
27
1_555
hydrog
WATSON-CRICK
C
DA
2
C
N1
DA
2
1_555
D
DT
26
D
N3
DT
26
1_555
hydrog
WATSON-CRICK
C
DA
2
C
N6
DA
2
1_555
D
DT
26
D
O4
DT
26
1_555
hydrog
WATSON-CRICK
C
DA
3
C
N1
DA
3
1_555
D
DT
25
D
N3
DT
25
1_555
hydrog
WATSON-CRICK
C
DA
3
C
N6
DA
3
1_555
D
DT
25
D
O4
DT
25
1_555
hydrog
WATSON-CRICK
C
DT
4
C
N3
DT
4
1_555
D
DA
24
D
N1
DA
24
1_555
hydrog
WATSON-CRICK
C
DT
4
C
O4
DT
4
1_555
D
DA
24
D
N6
DA
24
1_555
hydrog
WATSON-CRICK
C
DT
5
C
N3
DT
5
1_555
D
DA
23
D
N1
DA
23
1_555
hydrog
WATSON-CRICK
C
DT
5
C
O4
DT
5
1_555
D
DA
23
D
N6
DA
23
1_555
hydrog
DT-DC MISPAIR
C
DT
6
C
O4
DT
6
1_555
D
DC
21
D
N4
DC
21
1_555
hydrog
WATSON-CRICK
C
DT
6
C
N3
DT
6
1_555
D
DA
22
D
N1
DA
22
1_555
hydrog
WATSON-CRICK
C
DT
6
C
O4
DT
6
1_555
D
DA
22
D
N6
DA
22
1_555
hydrog
WATSON-CRICK
C
DG
7
C
N1
DG
7
1_555
D
DC
21
D
N3
DC
21
1_555
hydrog
WATSON-CRICK
C
DG
7
C
N2
DG
7
1_555
D
DC
21
D
O2
DC
21
1_555
hydrog
WATSON-CRICK
C
DG
7
C
O6
DG
7
1_555
D
DC
21
D
N4
DC
21
1_555
hydrog
WATSON-CRICK
C
DT
8
C
N3
DT
8
1_555
D
DA
20
D
N1
DA
20
1_555
hydrog
WATSON-CRICK
C
DT
8
C
O4
DT
8
1_555
D
DA
20
D
N6
DA
20
1_555
hydrog
WATSON-CRICK
C
DT
9
C
N3
DT
9
1_555
D
DA
19
D
N1
DA
19
1_555
hydrog
WATSON-CRICK
C
DT
9
C
O4
DT
9
1_555
D
DA
19
D
N6
DA
19
1_555
hydrog
WATSON-CRICK
C
DT
10
C
N3
DT
10
1_555
D
DA
18
D
N1
DA
18
1_555
hydrog
WATSON-CRICK
C
DT
10
C
O4
DT
10
1_555
D
DA
18
D
N6
DA
18
1_555
hydrog
DG-DC PAIR
C
DG
11
C
N1
DG
11
1_555
D
DC
17
D
N3
DC
17
1_555
hydrog
WATSON-CRICK
C
DG
12
C
N1
DG
12
1_555
D
DC
16
D
N3
DC
16
1_555
hydrog
WATSON-CRICK
C
DG
12
C
N2
DG
12
1_555
D
DC
16
D
O2
DC
16
1_555
hydrog
WATSON-CRICK
C
DG
12
C
O6
DG
12
1_555
D
DC
16
D
N4
DC
16
1_555
hydrog
WATSON-CRICK
C
DG
13
C
N1
DG
13
1_555
D
DC
15
D
N3
DC
15
1_555
hydrog
WATSON-CRICK
C
DG
13
C
N2
DG
13
1_555
D
DC
15
D
O2
DC
15
1_555
hydrog
WATSON-CRICK
C
DG
13
C
O6
DG
13
1_555
D
DC
15
D
N4
DC
15
1_555
hydrog
WATSON-CRICK
C
DC
14
C
N3
DC
14
1_555
D
DG
14
D
N1
DG
14
1_555
hydrog
WATSON-CRICK
C
DC
14
C
N4
DC
14
1_555
D
DG
14
D
O6
DG
14
1_555
hydrog
WATSON-CRICK
C
DC
14
C
O2
DC
14
1_555
D
DG
14
D
N2
DG
14
1_555
hydrog
WATSON-CRICK
C
DG
15
C
N1
DG
15
1_555
D
DC
13
D
N3
DC
13
1_555
hydrog
WATSON-CRICK
C
DG
15
C
N2
DG
15
1_555
D
DC
13
D
O2
DC
13
1_555
hydrog
WATSON-CRICK
C
DG
15
C
O6
DG
15
1_555
D
DC
13
D
N4
DC
13
1_555
hydrog
WATSON-CRICK
C
DC
16
C
N3
DC
16
1_555
D
DG
12
D
N1
DG
12
1_555
hydrog
WATSON-CRICK
C
DC
16
C
N4
DC
16
1_555
D
DG
12
D
O6
DG
12
1_555
hydrog
WATSON-CRICK
C
DC
16
C
O2
DC
16
1_555
D
DG
12
D
N2
DG
12
1_555
hydrog
WATSON-CRICK
C
DT
17
C
N3
DT
17
1_555
D
DA
11
D
N1
DA
11
1_555
hydrog
WATSON-CRICK
C
DT
17
C
O4
DT
17
1_555
D
DA
11
D
N6
DA
11
1_555
hydrog
WATSON-CRICK
C
DG
18
C
N1
DG
18
1_555
D
DC
10
D
N3
DC
10
1_555
hydrog
WATSON-CRICK
C
DG
18
C
N2
DG
18
1_555
D
DC
10
D
O2
DC
10
1_555
hydrog
WATSON-CRICK
C
DG
18
C
O6
DG
18
1_555
D
DC
10
D
N4
DC
10
1_555
hydrog
WATSON-CRICK
C
DA
19
C
N1
DA
19
1_555
D
DT
9
D
N3
DT
9
1_555
hydrog
WATSON-CRICK
C
DA
19
C
N6
DA
19
1_555
D
DT
9
D
O4
DT
9
1_555
hydrog
WATSON-CRICK
C
DG
20
C
N1
DG
20
1_555
D
DC
8
D
N3
DC
8
1_555
hydrog
WATSON-CRICK
C
DG
20
C
N2
DG
20
1_555
D
DC
8
D
O2
DC
8
1_555
hydrog
WATSON-CRICK
C
DG
20
C
O6
DG
20
1_555
D
DC
8
D
N4
DC
8
1_555
hydrog
DC-DT MISPAIR
C
DC
21
C
N4
DC
21
1_555
D
DT
6
D
O4
DT
6
1_555
hydrog
WATSON-CRICK
C
DC
21
C
N3
DC
21
1_555
D
DG
7
D
N1
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
21
C
N4
DC
21
1_555
D
DG
7
D
O6
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
21
C
O2
DC
21
1_555
D
DG
7
D
N2
DG
7
1_555
hydrog
DA-DT PAIR
C
DA
22
C
N1
DA
22
1_555
D
DT
6
D
N3
DT
6
1_555
hydrog
WATSON-CRICK
C
DA
23
C
N1
DA
23
1_555
D
DT
5
D
N3
DT
5
1_555
hydrog
WATSON-CRICK
C
DA
23
C
N6
DA
23
1_555
D
DT
5
D
O4
DT
5
1_555
hydrog
WATSON-CRICK
C
DA
24
C
N1
DA
24
1_555
D
DT
4
D
N3
DT
4
1_555
hydrog
WATSON-CRICK
C
DA
24
C
N6
DA
24
1_555
D
DT
4
D
O4
DT
4
1_555
hydrog
WATSON-CRICK
C
DT
25
C
N3
DT
25
1_555
D
DA
3
D
N1
DA
3
1_555
hydrog
WATSON-CRICK
C
DT
25
C
O4
DT
25
1_555
D
DA
3
D
N6
DA
3
1_555
hydrog
WATSON-CRICK
C
DT
26
C
N3
DT
26
1_555
D
DA
2
D
N1
DA
2
1_555
hydrog
WATSON-CRICK
C
DT
26
C
O4
DT
26
1_555
D
DA
2
D
N6
DA
2
1_555
hydrog
DT-DA PAIR
C
DT
27
C
N3
DT
27
1_555
D
DA
1
D
N1
DA
1
1_555
DNA BINDING PROTEIN/DNA
Protein-DNA complex, HTH domain, minor groove compression, DNA bending, indirect recognition, activator, DNA-binding, Transcription, Transcription regulation, DNA BINDING PROTEIN-DNA COMPLEX
B
ASN
43
B
ASN
43
1
B
GLY
44
B
GLY
44
-2.99
FIS_ECOLI
UNP
1
1
P0A6R3
MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALM
MGINRGTLRKKLKKYGMN
3JRC
PDB
2
3JRC
AAATTTGTTTGGGCGCTGAGCAAATTT
3JRC
PDB
3
3JRC
AAATTTGCTCAGCGCCCAAACAAATTT
1
98
3JRC
1
98
P0A6R3
A
1
1
98
1
98
3JRC
1
98
P0A6R3
B
1
1
98
1
27
3JRC
1
27
3JRC
C
2
1
27
1
27
3JRC
1
27
3JRC
D
3
1
27
2
2
anti-parallel
anti-parallel
A
THR
12
A
THR
12
A
VAL
16
A
VAL
16
A
VAL
22
A
VAL
22
A
PRO
26
A
PRO
26
B
THR
12
B
THR
12
B
VAL
16
B
VAL
16
B
VAL
22
B
VAL
22
B
PRO
26
B
PRO
26
19
P 21 21 21