0.011836
0.000000
0.000000
0.000000
0.011836
0.000000
0.000000
0.000000
0.011836
0.00000
0.00000
0.00000
De Jonge, N.
Buts, L.
Loris, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
84.487
84.487
84.487
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
S
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
R
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
N
337
N
O
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
N
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
285
5606
5613
10.1074/jbc.M109.068429
19959472
Structural and thermodynamic characterization of vibrio fischeri CCDB
2010
DK
Acta Crystallogr.,Sect.F
1744-3091
63
356
360
10.1107/S1744309107012092
17401216
Purification and crystallization of Vibrio fischeri CcdB and its complexes with fragments of gyrase and CcdA
2007
10.2210/pdb3jsc/pdb
pdb_00003jsc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2006-10-12
MAR CCD 165 mm
SINGLE WAVELENGTH
M
x-ray
1
0.8162
1.0
X11
EMBL/DESY, HAMBURG
0.8162
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
11879.721
CcdB
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
72
nat
water
no
no
MSQFTLYKNKDKSSAKTYPYFVDVQSDLLDNLNTRLVIPLTPIELLDKKAPSHLCPTIHIDEGDFIMLTQQMTSVPVKIL
SEPVNELSTFRNEIIAAIDFLITGI
MSQFTLYKNKDKSSAKTYPYFVDVQSDLLDNLNTRLVIPLTPIELLDKKAPSHLCPTIHIDEGDFIMLTQQMTSVPVKIL
SEPVNELSTFRNEIIAAIDFLITGI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
tac promotor
sample
ccdB
668
Vibrio fischeri
562
Escherichia coli
B462
plasmid
pKK223-3
1
2.12
41.85
VAPOR DIFFUSION, HANGING DROP
7.0
50mM Tris pH 7.0, 35% PEG 400, 250mM LiSO4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2009-12-01
1
1
2011-07-13
1
2
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CcdB dimer
CcdB dimer
CcdB dimer
CcdB dimer
CcdBVfi structure
RCSB
Y
PDBJ
2009-09-10
REL
REL
SO4
SULFATE ION
HOH
water
1VUB
CcdB from monomer A (1VUB)
PDB
experimental model
SO4
1
2
SO4
SO4
106
A
HOH
1
3
HOH
HOH
107
A
HOH
2
3
HOH
HOH
108
A
HOH
3
3
HOH
HOH
109
A
HOH
4
3
HOH
HOH
110
A
HOH
5
3
HOH
HOH
111
A
HOH
6
3
HOH
HOH
112
A
HOH
7
3
HOH
HOH
113
A
HOH
8
3
HOH
HOH
114
A
HOH
9
3
HOH
HOH
115
A
HOH
10
3
HOH
HOH
116
A
HOH
11
3
HOH
HOH
117
A
HOH
12
3
HOH
HOH
118
A
HOH
13
3
HOH
HOH
119
A
HOH
14
3
HOH
HOH
120
A
HOH
15
3
HOH
HOH
121
A
HOH
16
3
HOH
HOH
122
A
HOH
17
3
HOH
HOH
123
A
HOH
18
3
HOH
HOH
124
A
HOH
19
3
HOH
HOH
125
A
HOH
20
3
HOH
HOH
126
A
HOH
22
3
HOH
HOH
127
A
HOH
24
3
HOH
HOH
128
A
HOH
26
3
HOH
HOH
129
A
HOH
27
3
HOH
HOH
130
A
HOH
28
3
HOH
HOH
131
A
HOH
29
3
HOH
HOH
132
A
HOH
30
3
HOH
HOH
133
A
HOH
31
3
HOH
HOH
134
A
HOH
32
3
HOH
HOH
135
A
HOH
33
3
HOH
HOH
136
A
HOH
34
3
HOH
HOH
137
A
HOH
35
3
HOH
HOH
138
A
HOH
36
3
HOH
HOH
139
A
HOH
37
3
HOH
HOH
140
A
HOH
38
3
HOH
HOH
141
A
HOH
39
3
HOH
HOH
142
A
HOH
40
3
HOH
HOH
143
A
HOH
41
3
HOH
HOH
144
A
HOH
42
3
HOH
HOH
145
A
HOH
43
3
HOH
HOH
146
A
HOH
44
3
HOH
HOH
147
A
HOH
45
3
HOH
HOH
148
A
HOH
46
3
HOH
HOH
149
A
HOH
47
3
HOH
HOH
150
A
HOH
48
3
HOH
HOH
151
A
HOH
49
3
HOH
HOH
152
A
HOH
50
3
HOH
HOH
153
A
HOH
51
3
HOH
HOH
154
A
HOH
52
3
HOH
HOH
155
A
HOH
53
3
HOH
HOH
156
A
HOH
54
3
HOH
HOH
157
A
HOH
55
3
HOH
HOH
158
A
HOH
56
3
HOH
HOH
159
A
HOH
57
3
HOH
HOH
160
A
HOH
58
3
HOH
HOH
161
A
HOH
59
3
HOH
HOH
162
A
HOH
60
3
HOH
HOH
163
A
HOH
61
3
HOH
HOH
164
A
HOH
62
3
HOH
HOH
165
A
HOH
63
3
HOH
HOH
166
A
HOH
64
3
HOH
HOH
167
A
HOH
65
3
HOH
HOH
168
A
HOH
66
3
HOH
HOH
169
A
HOH
67
3
HOH
HOH
170
A
HOH
68
3
HOH
HOH
171
A
HOH
69
3
HOH
HOH
172
A
HOH
70
3
HOH
HOH
173
A
HOH
71
3
HOH
HOH
174
A
HOH
72
3
HOH
HOH
175
A
HOH
73
3
HOH
HOH
176
A
HOH
74
3
HOH
HOH
177
A
HOH
75
3
HOH
HOH
178
A
n
1
1
A
SER
2
n
2
SER
2
A
GLN
3
n
3
GLN
3
A
PHE
4
n
4
PHE
4
A
THR
5
n
5
THR
5
A
LEU
6
n
6
LEU
6
A
TYR
7
n
7
TYR
7
A
LYS
8
n
8
LYS
8
A
ASN
9
n
9
ASN
9
A
LYS
10
n
10
LYS
10
A
ASP
11
n
11
ASP
11
A
LYS
12
n
12
LYS
12
A
SER
13
n
13
SER
13
A
SER
14
n
14
SER
14
A
ALA
15
n
15
ALA
15
A
LYS
16
n
16
LYS
16
A
THR
17
n
17
THR
17
A
TYR
18
n
18
TYR
18
A
PRO
19
n
19
PRO
19
A
TYR
20
n
20
TYR
20
A
PHE
21
n
21
PHE
21
A
VAL
22
n
22
VAL
22
A
ASP
23
n
23
ASP
23
A
VAL
24
n
24
VAL
24
A
GLN
25
n
25
GLN
25
A
SER
26
n
26
SER
26
A
ASP
27
n
27
ASP
27
A
LEU
28
n
28
LEU
28
A
LEU
29
n
29
LEU
29
A
ASP
30
n
30
ASP
30
A
ASN
31
n
31
ASN
31
A
LEU
32
n
32
LEU
32
A
ASN
33
n
33
ASN
33
A
THR
34
n
34
THR
34
A
ARG
35
n
35
ARG
35
A
LEU
36
n
36
LEU
36
A
VAL
37
n
37
VAL
37
A
ILE
38
n
38
ILE
38
A
PRO
39
n
39
PRO
39
A
LEU
40
n
40
LEU
40
A
THR
41
n
41
THR
41
A
PRO
42
n
42
PRO
42
A
ILE
43
n
43
ILE
43
A
GLU
44
n
44
GLU
44
A
LEU
45
n
45
LEU
45
A
n
46
46
A
n
47
47
A
n
48
48
A
n
49
49
A
n
50
50
A
n
51
51
A
n
52
52
A
n
53
53
A
LEU
54
n
54
LEU
54
A
CYS
55
n
55
CYS
55
A
PRO
56
n
56
PRO
56
A
THR
57
n
57
THR
57
A
ILE
58
n
58
ILE
58
A
HIS
59
n
59
HIS
59
A
ILE
60
n
60
ILE
60
A
ASP
61
n
61
ASP
61
A
GLU
62
n
62
GLU
62
A
GLY
63
n
63
GLY
63
A
ASP
64
n
64
ASP
64
A
PHE
65
n
65
PHE
65
A
ILE
66
n
66
ILE
66
A
MET
67
n
67
MET
67
A
LEU
68
n
68
LEU
68
A
THR
69
n
69
THR
69
A
GLN
70
n
70
GLN
70
A
GLN
71
n
71
GLN
71
A
MET
72
n
72
MET
72
A
THR
73
n
73
THR
73
A
SER
74
n
74
SER
74
A
VAL
75
n
75
VAL
75
A
PRO
76
n
76
PRO
76
A
VAL
77
n
77
VAL
77
A
LYS
78
n
78
LYS
78
A
ILE
79
n
79
ILE
79
A
LEU
80
n
80
LEU
80
A
SER
81
n
81
SER
81
A
GLU
82
n
82
GLU
82
A
PRO
83
n
83
PRO
83
A
VAL
84
n
84
VAL
84
A
ASN
85
n
85
ASN
85
A
GLU
86
n
86
GLU
86
A
LEU
87
n
87
LEU
87
A
SER
88
n
88
SER
88
A
THR
89
n
89
THR
89
A
PHE
90
n
90
PHE
90
A
ARG
91
n
91
ARG
91
A
ASN
92
n
92
ASN
92
A
GLU
93
n
93
GLU
93
A
ILE
94
n
94
ILE
94
A
ILE
95
n
95
ILE
95
A
ALA
96
n
96
ALA
96
A
ALA
97
n
97
ALA
97
A
ILE
98
n
98
ILE
98
A
ASP
99
n
99
ASP
99
A
PHE
100
n
100
PHE
100
A
LEU
101
n
101
LEU
101
A
ILE
102
n
102
ILE
102
A
THR
103
n
103
THR
103
A
GLY
104
n
104
GLY
104
A
ILE
105
n
105
ILE
105
A
author_and_software_defined_assembly
PISA
2
dimeric
2010
-38
9190
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
15_455
-x-1/2,y,-z
crystal symmetry operation
-42.2435000000
0.0000000000
0.0000000000
A
N
ILE
58
A
N
ILE
58
A
O
PHE
65
A
O
PHE
65
A
O
ILE
66
A
O
ILE
66
A
N
THR
41
A
N
THR
41
A
N
VAL
37
A
N
VAL
37
A
O
THR
73
A
O
THR
73
A
N
ILE
58
A
N
ILE
58
A
O
PHE
65
A
O
PHE
65
A
O
ILE
66
A
O
ILE
66
A
N
THR
41
A
N
THR
41
A
O
ILE
38
A
O
ILE
38
A
N
VAL
22
A
N
VAL
22
A
O
PHE
21
A
O
PHE
21
A
N
TYR
7
A
N
TYR
7
A
N
LEU
6
A
N
LEU
6
A
O
VAL
84
A
O
VAL
84
1
A
CD
LYS
8
A
CD
LYS
8
1
Y
1
A
CE
LYS
8
A
CE
LYS
8
1
Y
1
A
NZ
LYS
8
A
NZ
LYS
8
1
Y
1
A
NZ
LYS
10
A
NZ
LYS
10
1
Y
1
A
CE
LYS
12
A
CE
LYS
12
1
Y
1
A
NZ
LYS
12
A
NZ
LYS
12
1
Y
1
A
CD
LYS
16
A
CD
LYS
16
1
Y
1
A
CE
LYS
16
A
CE
LYS
16
1
Y
1
A
NZ
LYS
16
A
NZ
LYS
16
1
Y
1
A
OE1
GLN
70
A
OE1
GLN
70
1
Y
1
A
CE
LYS
78
A
CE
LYS
78
1
Y
1
A
NZ
LYS
78
A
NZ
LYS
78
1
Y
1
A
CG
GLU
82
A
CG
GLU
82
1
Y
1
A
CD
GLU
82
A
CD
GLU
82
1
Y
1
A
OE1
GLU
82
A
OE1
GLU
82
1
Y
1
A
OE2
GLU
82
A
OE2
GLU
82
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
LEU
46
A
LEU
46
1
Y
1
A
ASP
47
A
ASP
47
1
Y
1
A
LYS
48
A
LYS
48
1
Y
1
A
LYS
49
A
LYS
49
1
Y
1
A
ALA
50
A
ALA
50
1
Y
1
A
PRO
51
A
PRO
51
1
Y
1
A
SER
52
A
SER
52
1
Y
1
A
HIS
53
A
HIS
53
1
Y
1
A
A
O
O
HOH
HOH
111
141
1.90
1_555
24_555
1
A
SER
81
-68.31
-178.60
48.82
17.692
7.50
0.000
0.000
0.000
0.000
-0.000
0.000
0.2022
0.1724
0.1739
1.500
19.914
815
15409
16224
16224
5.02
100.00
1.00
0.29
0.880
0.17
random
1
individual atomic B factors
THROUGHOUT
1.35
0
MOLECULAR REPLACEMENT
18.650
0.90
1.11
CcdB from monomer A (1VUB)
ML
FLAT BULK SOLVENT MODEL
94.461
0.454
1.500
19.914
72
851
5
0
774
0.009
797
1.330
1100
15.107
295
0.100
141
0.006
138
0.2383
0.1790
1.5941
142
2541
100.00
0.2141
0.1674
1.7171
124
2537
100.00
0.1898
0.1651
1.8898
138
2540
100.00
0.1862
0.1567
2.1629
133
2581
100.00
0.1937
0.1591
2.7239
136
2561
100.00
0.2054
0.1829
19.9155
142
2649
100.00
14.550
1.5
19.914
3JSC
16225
16225
0
-3
0.047
0.047
1
34.2
18.89
100.0
0.176
1.50
1.55
12.1
1589
0.176
18.9
100
data collection
MAR345dtb
phasing
PHASER
refinement
PHENIX
(phenix.refine)
data reduction
DENZO
data scaling
SCALEPACK
CcdBVfi-FormI-pH7.0
1
N
N
2
N
N
3
N
N
A
ASP
11
A
ASP
11
HELX_P
A
LYS
16
A
LYS
16
1
1
6
A
SER
26
A
SER
26
HELX_P
A
ASP
30
A
ASP
30
5
2
5
A
THR
69
A
THR
69
HELX_P
A
MET
72
A
MET
72
5
3
4
A
PHE
90
A
PHE
90
HELX_P
A
GLY
104
A
GLY
104
1
4
15
TOXIN
ALPHA+BETA, SH3 domain, Toxin
Q84B82_VIBFI
UNP
1
1
Q84B82
MSQFTLYKNKDKSSAKTYPYFVDVQSDLLDNLNTRLVIPLTPIELLDKKAPSHLCPTIHIDEGDFIMLTQQMTSVPVKIL
SEPVNELSTFRNEIIAAIDFLITGI
1
105
3JSC
1
105
Q84B82
A
1
1
105
4
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
57
A
THR
57
A
ILE
60
A
ILE
60
A
GLY
63
A
GLY
63
A
MET
67
A
MET
67
A
THR
34
A
THR
34
A
PRO
42
A
PRO
42
A
THR
73
A
THR
73
A
PRO
76
A
PRO
76
A
THR
57
A
THR
57
A
ILE
60
A
ILE
60
A
GLY
63
A
GLY
63
A
MET
67
A
MET
67
A
THR
34
A
THR
34
A
PRO
42
A
PRO
42
A
TYR
20
A
TYR
20
A
ASP
23
A
ASP
23
A
THR
5
A
THR
5
A
ASN
9
A
ASN
9
A
LEU
80
A
LEU
80
A
GLU
86
A
GLU
86
BINDING SITE FOR RESIDUE SO4 A 106
A
SO4
106
Software
10
A
SER
2
A
SER
2
10
1_555
A
TYR
7
A
TYR
7
10
1_555
A
ASP
30
A
ASP
30
10
1_555
A
ARG
35
A
ARG
35
10
1_555
A
ASN
92
A
ASN
92
10
9_555
A
HOH
116
C
HOH
10
1_555
A
HOH
132
C
HOH
10
9_555
A
HOH
140
C
HOH
10
1_555
A
HOH
161
C
HOH
10
1_555
A
HOH
169
C
HOH
10
1_555
199
I 21 3