0.018057
0.000000
0.003129
0.000000
0.021801
0.000000
0.000000
0.000000
0.012185
0.00000
0.00000
0.00000
Yoshikawa, A.
Sato, Y.
Mimura, H.
Yamashita, M.
Yamagata, A.
Fukai, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
99.83
90.00
55.380
45.870
83.290
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
Febs Lett.
FEBLAL
0165
0014-5793
583
3317
3322
10.1016/j.febslet.2009.09.028
19766637
Crystal structure of the NEMO ubiquitin-binding domain in complex with Lys 63-linked di-ubiquitin
2009
10.2210/pdb3jsv/pdb
pdb_00003jsv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
90
1
CCD
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
BL41XU
SPring-8
1.000
SYNCHROTRON
SPRING-8 BEAMLINE BL41XU
8604.845
Ubiquitin
K63R
1
man
polymer
8691.918
Ubiquitin
X77D
1
man
polymer
11105.640
NF-kappa-B essential modulator
residues 250-343
2
man
polymer
18.015
water
26
nat
water
NEMO, NF-kappa-B essential modifier, Inhibitor of nuclear factor kappa-B kinase subunit gamma, IkB kinase subunit gamma, I-kappa-B kinase gamma, IKK-gamma, IKKG, IkB kinase-associated protein 1, IKKAP1, mFIP-3
no
no
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG
A
polypeptide(L)
no
no
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGD
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGD
B
polypeptide(L)
no
no
GMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL
QREFNKLKVGCHES
GMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL
QREFNKLKVGCHES
C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
9606
Homo sapiens
562
Escherichia coli
Rosetta(DE3)
plasmid
pET
human
sample
9606
Homo sapiens
562
Escherichia coli
Rosetta(DE3)
plasmid
pET
mouse
sample
Ikbkg, Nemo, NEMO(249-343)
10090
Mus musculus
562
Escherichia coli
Rosetta(DE3)
plasmid
pCold
1
2.64
53.38
VAPOR DIFFUSION, SITTING DROP
7
pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
database_2
struct_conn
struct_ref_seq_dif
repository
Initial release
Version format compliance
Database references
Derived calculations
1
0
2009-10-27
1
1
2011-07-13
1
2
2021-11-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
RCSB
Y
PDBJ
2009-09-11
REL
REL
HOH
water
TIP
1
4
HOH
HOH
77
A
TIP
2
4
HOH
HOH
78
A
TIP
3
4
HOH
HOH
79
A
TIP
6
4
HOH
HOH
80
A
TIP
8
4
HOH
HOH
81
A
TIP
11
4
HOH
HOH
82
A
TIP
12
4
HOH
HOH
83
A
TIP
13
4
HOH
HOH
84
A
TIP
14
4
HOH
HOH
85
A
TIP
15
4
HOH
HOH
86
A
TIP
16
4
HOH
HOH
87
A
TIP
17
4
HOH
HOH
88
A
TIP
18
4
HOH
HOH
89
A
TIP
20
4
HOH
HOH
90
A
TIP
22
4
HOH
HOH
91
A
TIP
23
4
HOH
HOH
92
A
TIP
26
4
HOH
HOH
93
A
TIP
5
4
HOH
HOH
78
B
TIP
7
4
HOH
HOH
79
B
TIP
24
4
HOH
HOH
80
B
TIP
4
4
HOH
HOH
4
C
TIP
9
4
HOH
HOH
9
C
TIP
21
4
HOH
HOH
21
C
TIP
10
4
HOH
HOH
10
D
TIP
19
4
HOH
HOH
19
D
TIP
25
4
HOH
HOH
25
D
MET
1
n
1
MET
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
VAL
5
n
5
VAL
5
A
LYS
6
n
6
LYS
6
A
THR
7
n
7
THR
7
A
LEU
8
n
8
LEU
8
A
THR
9
n
9
THR
9
A
GLY
10
n
10
GLY
10
A
LYS
11
n
11
LYS
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
THR
14
n
14
THR
14
A
LEU
15
n
15
LEU
15
A
GLU
16
n
16
GLU
16
A
VAL
17
n
17
VAL
17
A
GLU
18
n
18
GLU
18
A
PRO
19
n
19
PRO
19
A
SER
20
n
20
SER
20
A
ASP
21
n
21
ASP
21
A
THR
22
n
22
THR
22
A
ILE
23
n
23
ILE
23
A
GLU
24
n
24
GLU
24
A
ASN
25
n
25
ASN
25
A
VAL
26
n
26
VAL
26
A
LYS
27
n
27
LYS
27
A
ALA
28
n
28
ALA
28
A
LYS
29
n
29
LYS
29
A
ILE
30
n
30
ILE
30
A
GLN
31
n
31
GLN
31
A
ASP
32
n
32
ASP
32
A
LYS
33
n
33
LYS
33
A
GLU
34
n
34
GLU
34
A
GLY
35
n
35
GLY
35
A
ILE
36
n
36
ILE
36
A
PRO
37
n
37
PRO
37
A
PRO
38
n
38
PRO
38
A
ASP
39
n
39
ASP
39
A
GLN
40
n
40
GLN
40
A
GLN
41
n
41
GLN
41
A
ARG
42
n
42
ARG
42
A
LEU
43
n
43
LEU
43
A
ILE
44
n
44
ILE
44
A
PHE
45
n
45
PHE
45
A
ALA
46
n
46
ALA
46
A
GLY
47
n
47
GLY
47
A
LYS
48
n
48
LYS
48
A
GLN
49
n
49
GLN
49
A
LEU
50
n
50
LEU
50
A
GLU
51
n
51
GLU
51
A
ASP
52
n
52
ASP
52
A
GLY
53
n
53
GLY
53
A
ARG
54
n
54
ARG
54
A
THR
55
n
55
THR
55
A
LEU
56
n
56
LEU
56
A
SER
57
n
57
SER
57
A
ASP
58
n
58
ASP
58
A
TYR
59
n
59
TYR
59
A
ASN
60
n
60
ASN
60
A
ILE
61
n
61
ILE
61
A
GLN
62
n
62
GLN
62
A
ARG
63
n
63
ARG
63
A
GLU
64
n
64
GLU
64
A
SER
65
n
65
SER
65
A
THR
66
n
66
THR
66
A
LEU
67
n
67
LEU
67
A
HIS
68
n
68
HIS
68
A
LEU
69
n
69
LEU
69
A
VAL
70
n
70
VAL
70
A
LEU
71
n
71
LEU
71
A
ARG
72
n
72
ARG
72
A
LEU
73
n
73
LEU
73
A
ARG
74
n
74
ARG
74
A
GLY
75
n
75
GLY
75
A
GLY
76
n
76
GLY
76
A
MET
1
n
1
MET
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
PHE
4
n
4
PHE
4
B
VAL
5
n
5
VAL
5
B
LYS
6
n
6
LYS
6
B
THR
7
n
7
THR
7
B
LEU
8
n
8
LEU
8
B
THR
9
n
9
THR
9
B
GLY
10
n
10
GLY
10
B
LYS
11
n
11
LYS
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
THR
14
n
14
THR
14
B
LEU
15
n
15
LEU
15
B
GLU
16
n
16
GLU
16
B
VAL
17
n
17
VAL
17
B
GLU
18
n
18
GLU
18
B
PRO
19
n
19
PRO
19
B
SER
20
n
20
SER
20
B
ASP
21
n
21
ASP
21
B
THR
22
n
22
THR
22
B
ILE
23
n
23
ILE
23
B
GLU
24
n
24
GLU
24
B
ASN
25
n
25
ASN
25
B
VAL
26
n
26
VAL
26
B
LYS
27
n
27
LYS
27
B
ALA
28
n
28
ALA
28
B
LYS
29
n
29
LYS
29
B
ILE
30
n
30
ILE
30
B
GLN
31
n
31
GLN
31
B
ASP
32
n
32
ASP
32
B
LYS
33
n
33
LYS
33
B
GLU
34
n
34
GLU
34
B
GLY
35
n
35
GLY
35
B
ILE
36
n
36
ILE
36
B
PRO
37
n
37
PRO
37
B
PRO
38
n
38
PRO
38
B
ASP
39
n
39
ASP
39
B
GLN
40
n
40
GLN
40
B
GLN
41
n
41
GLN
41
B
ARG
42
n
42
ARG
42
B
LEU
43
n
43
LEU
43
B
ILE
44
n
44
ILE
44
B
PHE
45
n
45
PHE
45
B
ALA
46
n
46
ALA
46
B
GLY
47
n
47
GLY
47
B
LYS
48
n
48
LYS
48
B
GLN
49
n
49
GLN
49
B
LEU
50
n
50
LEU
50
B
GLU
51
n
51
GLU
51
B
ASP
52
n
52
ASP
52
B
GLY
53
n
53
GLY
53
B
ARG
54
n
54
ARG
54
B
THR
55
n
55
THR
55
B
LEU
56
n
56
LEU
56
B
SER
57
n
57
SER
57
B
ASP
58
n
58
ASP
58
B
TYR
59
n
59
TYR
59
B
ASN
60
n
60
ASN
60
B
ILE
61
n
61
ILE
61
B
GLN
62
n
62
GLN
62
B
LYS
63
n
63
LYS
63
B
GLU
64
n
64
GLU
64
B
SER
65
n
65
SER
65
B
THR
66
n
66
THR
66
B
LEU
67
n
67
LEU
67
B
HIS
68
n
68
HIS
68
B
LEU
69
n
69
LEU
69
B
VAL
70
n
70
VAL
70
B
LEU
71
n
71
LEU
71
B
ARG
72
n
72
ARG
72
B
LEU
73
n
73
LEU
73
B
ARG
74
n
74
ARG
74
B
GLY
75
n
75
GLY
75
B
GLY
76
n
76
GLY
76
B
ASP
77
n
77
ASP
77
B
n
1
250
C
n
2
251
C
GLN
252
n
3
GLN
252
C
LEU
253
n
4
LEU
253
C
GLU
254
n
5
GLU
254
C
ASP
255
n
6
ASP
255
C
LEU
256
n
7
LEU
256
C
ARG
257
n
8
ARG
257
C
GLN
258
n
9
GLN
258
C
GLN
259
n
10
GLN
259
C
LEU
260
n
11
LEU
260
C
GLN
261
n
12
GLN
261
C
GLN
262
n
13
GLN
262
C
ALA
263
n
14
ALA
263
C
GLU
264
n
15
GLU
264
C
GLU
265
n
16
GLU
265
C
ALA
266
n
17
ALA
266
C
LEU
267
n
18
LEU
267
C
VAL
268
n
19
VAL
268
C
ALA
269
n
20
ALA
269
C
LYS
270
n
21
LYS
270
C
GLN
271
n
22
GLN
271
C
GLU
272
n
23
GLU
272
C
LEU
273
n
24
LEU
273
C
ILE
274
n
25
ILE
274
C
ASP
275
n
26
ASP
275
C
LYS
276
n
27
LYS
276
C
LEU
277
n
28
LEU
277
C
LYS
278
n
29
LYS
278
C
GLU
279
n
30
GLU
279
C
GLU
280
n
31
GLU
280
C
ALA
281
n
32
ALA
281
C
GLU
282
n
33
GLU
282
C
GLN
283
n
34
GLN
283
C
HIS
284
n
35
HIS
284
C
LYS
285
n
36
LYS
285
C
ILE
286
n
37
ILE
286
C
VAL
287
n
38
VAL
287
C
MET
288
n
39
MET
288
C
GLU
289
n
40
GLU
289
C
THR
290
n
41
THR
290
C
VAL
291
n
42
VAL
291
C
PRO
292
n
43
PRO
292
C
VAL
293
n
44
VAL
293
C
LEU
294
n
45
LEU
294
C
LYS
295
n
46
LYS
295
C
ALA
296
n
47
ALA
296
C
GLN
297
n
48
GLN
297
C
ALA
298
n
49
ALA
298
C
ASP
299
n
50
ASP
299
C
ILE
300
n
51
ILE
300
C
TYR
301
n
52
TYR
301
C
LYS
302
n
53
LYS
302
C
ALA
303
n
54
ALA
303
C
ASP
304
n
55
ASP
304
C
PHE
305
n
56
PHE
305
C
GLN
306
n
57
GLN
306
C
ALA
307
n
58
ALA
307
C
GLU
308
n
59
GLU
308
C
ARG
309
n
60
ARG
309
C
HIS
310
n
61
HIS
310
C
ALA
311
n
62
ALA
311
C
ARG
312
n
63
ARG
312
C
GLU
313
n
64
GLU
313
C
LYS
314
n
65
LYS
314
C
LEU
315
n
66
LEU
315
C
VAL
316
n
67
VAL
316
C
GLU
317
n
68
GLU
317
C
LYS
318
n
69
LYS
318
C
LYS
319
n
70
LYS
319
C
GLU
320
n
71
GLU
320
C
TYR
321
n
72
TYR
321
C
LEU
322
n
73
LEU
322
C
GLN
323
n
74
GLN
323
C
GLU
324
n
75
GLU
324
C
GLN
325
n
76
GLN
325
C
LEU
326
n
77
LEU
326
C
GLU
327
n
78
GLU
327
C
GLN
328
n
79
GLN
328
C
LEU
329
n
80
LEU
329
C
GLN
330
n
81
GLN
330
C
ARG
331
n
82
ARG
331
C
GLU
332
n
83
GLU
332
C
PHE
333
n
84
PHE
333
C
ASN
334
n
85
ASN
334
C
n
86
335
C
n
87
336
C
n
88
337
C
n
89
338
C
n
90
339
C
n
91
340
C
n
92
341
C
n
93
342
C
n
94
343
C
n
1
250
D
n
2
251
D
n
3
252
D
n
4
253
D
n
5
254
D
n
6
255
D
LEU
256
n
7
LEU
256
D
ARG
257
n
8
ARG
257
D
GLN
258
n
9
GLN
258
D
GLN
259
n
10
GLN
259
D
LEU
260
n
11
LEU
260
D
GLN
261
n
12
GLN
261
D
GLN
262
n
13
GLN
262
D
ALA
263
n
14
ALA
263
D
GLU
264
n
15
GLU
264
D
GLU
265
n
16
GLU
265
D
ALA
266
n
17
ALA
266
D
LEU
267
n
18
LEU
267
D
VAL
268
n
19
VAL
268
D
ALA
269
n
20
ALA
269
D
LYS
270
n
21
LYS
270
D
GLN
271
n
22
GLN
271
D
GLU
272
n
23
GLU
272
D
LEU
273
n
24
LEU
273
D
ILE
274
n
25
ILE
274
D
ASP
275
n
26
ASP
275
D
LYS
276
n
27
LYS
276
D
LEU
277
n
28
LEU
277
D
LYS
278
n
29
LYS
278
D
GLU
279
n
30
GLU
279
D
GLU
280
n
31
GLU
280
D
ALA
281
n
32
ALA
281
D
GLU
282
n
33
GLU
282
D
GLN
283
n
34
GLN
283
D
HIS
284
n
35
HIS
284
D
LYS
285
n
36
LYS
285
D
ILE
286
n
37
ILE
286
D
VAL
287
n
38
VAL
287
D
MET
288
n
39
MET
288
D
GLU
289
n
40
GLU
289
D
THR
290
n
41
THR
290
D
VAL
291
n
42
VAL
291
D
PRO
292
n
43
PRO
292
D
VAL
293
n
44
VAL
293
D
LEU
294
n
45
LEU
294
D
LYS
295
n
46
LYS
295
D
ALA
296
n
47
ALA
296
D
GLN
297
n
48
GLN
297
D
ALA
298
n
49
ALA
298
D
ASP
299
n
50
ASP
299
D
ILE
300
n
51
ILE
300
D
TYR
301
n
52
TYR
301
D
LYS
302
n
53
LYS
302
D
ALA
303
n
54
ALA
303
D
ASP
304
n
55
ASP
304
D
PHE
305
n
56
PHE
305
D
GLN
306
n
57
GLN
306
D
ALA
307
n
58
ALA
307
D
GLU
308
n
59
GLU
308
D
ARG
309
n
60
ARG
309
D
HIS
310
n
61
HIS
310
D
ALA
311
n
62
ALA
311
D
ARG
312
n
63
ARG
312
D
GLU
313
n
64
GLU
313
D
LYS
314
n
65
LYS
314
D
LEU
315
n
66
LEU
315
D
VAL
316
n
67
VAL
316
D
GLU
317
n
68
GLU
317
D
LYS
318
n
69
LYS
318
D
LYS
319
n
70
LYS
319
D
GLU
320
n
71
GLU
320
D
TYR
321
n
72
TYR
321
D
LEU
322
n
73
LEU
322
D
GLN
323
n
74
GLN
323
D
GLU
324
n
75
GLU
324
D
GLN
325
n
76
GLN
325
D
LEU
326
n
77
LEU
326
D
GLU
327
n
78
GLU
327
D
GLN
328
n
79
GLN
328
D
LEU
329
n
80
LEU
329
D
GLN
330
n
81
GLN
330
D
ARG
331
n
82
ARG
331
D
GLU
332
n
83
GLU
332
D
PHE
333
n
84
PHE
333
D
ASN
334
n
85
ASN
334
D
LYS
335
n
86
LYS
335
D
LEU
336
n
87
LEU
336
D
LYS
337
n
88
LYS
337
D
VAL
338
n
89
VAL
338
D
GLY
339
n
90
GLY
339
D
CYS
340
n
91
CYS
340
D
HIS
341
n
92
HIS
341
D
n
93
342
D
n
94
343
D
author_and_software_defined_assembly
PISA
4
tetrameric
6880
-68.0
19800
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
15
A
O
LEU
15
A
N
ILE
3
A
N
ILE
3
A
N
LYS
6
A
N
LYS
6
A
O
LEU
69
A
O
LEU
69
A
O
HIS
68
A
O
HIS
68
A
N
ILE
44
A
N
ILE
44
A
N
PHE
45
A
N
PHE
45
A
O
LYS
48
A
O
LYS
48
B
O
ILE
13
B
O
ILE
13
B
N
VAL
5
B
N
VAL
5
B
N
PHE
4
B
N
PHE
4
B
O
LEU
67
B
O
LEU
67
B
O
HIS
68
B
O
HIS
68
B
N
ILE
44
B
N
ILE
44
B
N
PHE
45
B
N
PHE
45
B
O
LYS
48
B
O
LYS
48
1
C
GLY
250
C
GLY
1
1
Y
1
C
MET
251
C
MET
2
1
Y
1
C
LYS
335
C
LYS
86
1
Y
1
C
LEU
336
C
LEU
87
1
Y
1
C
LYS
337
C
LYS
88
1
Y
1
C
VAL
338
C
VAL
89
1
Y
1
C
GLY
339
C
GLY
90
1
Y
1
C
CYS
340
C
CYS
91
1
Y
1
C
HIS
341
C
HIS
92
1
Y
1
C
GLU
342
C
GLU
93
1
Y
1
C
SER
343
C
SER
94
1
Y
1
D
GLY
250
D
GLY
1
1
Y
1
D
MET
251
D
MET
2
1
Y
1
D
GLN
252
D
GLN
3
1
Y
1
D
LEU
253
D
LEU
4
1
Y
1
D
GLU
254
D
GLU
5
1
Y
1
D
ASP
255
D
ASP
6
1
Y
1
D
GLU
342
D
GLU
93
1
Y
1
D
SER
343
D
SER
94
1
Y
1
B
PRO
19
-53.69
3.49
1
B
ARG
54
-52.25
177.26
1
B
GLN
62
-66.28
-172.87
1
B
ARG
74
-43.35
-82.84
1
C
PHE
333
-49.93
-72.49
1
D
GLU
264
-79.77
-72.65
1
D
GLU
289
-69.06
0.36
1
D
LEU
315
-65.11
2.76
protein_rep.param
protein.top
water_rep.param
water.top
82.1
-27.11
0.00
-6.73
-9.47
0.00
36.58
BULK SOLVENT MODEL USED
0.294
0.013
0.250
0.250
2.70
49.50
549
10739
5.1
92.9
RANDOM
110720.23
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
Engh & Huber
FLAT MODEL
49.6733
0.35
0.47
0.39
5.00
0.42
0.53
2.70
49.50
26
2652
0
0
2626
0.007
1.2
20.8
0.73
1.34
1.50
2.26
2.00
2.66
2.00
3.67
2.50
0.363
0.041
0.349
2.87
77
1439
6
5.1
79.4
32.1
2.7
50
3JSV
11492
11492
0
0
0.066
1
14.2
31
98.8
2.7
2.75
3.8
0.216
97.9
data collection
HKL-2000
phasing
MOLREP
refinement
CNS
1.2
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of mouse NEMO CoZi in complex with Lys63-linked di-ubiquitin
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
A
THR
22
A
THR
22
HELX_P
A
GLY
35
A
GLY
35
1
1
14
A
PRO
37
A
PRO
37
HELX_P
A
ASP
39
A
ASP
39
5
2
3
A
LEU
56
A
LEU
56
HELX_P
A
ASN
60
A
ASN
60
5
3
5
B
THR
22
B
THR
22
HELX_P
B
GLY
35
B
GLY
35
1
4
14
B
PRO
37
B
PRO
37
HELX_P
B
ASP
39
B
ASP
39
5
5
3
C
GLN
252
C
GLN
3
HELX_P
C
LYS
318
C
LYS
69
1
6
67
C
GLU
320
C
GLU
71
HELX_P
C
GLU
332
C
GLU
83
1
7
13
D
LEU
256
D
LEU
7
HELX_P
D
GLU
289
D
GLU
40
1
8
34
D
THR
290
D
THR
41
HELX_P
D
LEU
336
D
LEU
87
1
9
47
D
LEU
336
D
LEU
87
HELX_P
D
HIS
341
D
HIS
92
1
10
6
covale
1.332
one
A
GLY
76
A
C
GLY
76
1_555
B
LYS
63
B
NZ
LYS
63
1_555
SIGNALING PROTEIN/TRANSCRIPTION
ubiquitin, coiled-coil, cellular signaling, Cytoplasm, Isopeptide bond, Nucleus, Phosphoprotein, Ubl conjugation, Coiled coil, Disulfide bond, Metal-binding, Transcription, Transcription regulation, Zinc, Zinc-finger, SIGNALING PROTEIN-TRANSCRIPTION COMPLEX
UBIQ_HUMAN
UNP
1
1
P62988
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
UBIQ_HUMAN
UNP
2
1
P62988
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
NEMO_MOUSE
UNP
3
250
O88522
GMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL
QREFNKLKVGCHES
1
76
3JSV
1
76
P62988
A
1
1
76
1
76
3JSV
1
76
P62988
B
2
1
76
250
343
3JSV
250
343
O88522
C
3
1
94
250
343
3JSV
250
343
O88522
D
3
1
94
1
LYS
engineered mutation
ARG
63
3JSV
A
P62988
UNP
63
63
2
engineered mutation
ASP
77
3JSV
B
P62988
UNP
77
5
5
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
THR
12
A
THR
12
A
GLU
16
A
GLU
16
A
GLN
2
A
GLN
2
A
LYS
6
A
LYS
6
A
THR
66
A
THR
66
A
LEU
71
A
LEU
71
A
GLN
41
A
GLN
41
A
PHE
45
A
PHE
45
A
LYS
48
A
LYS
48
A
GLN
49
A
GLN
49
B
THR
12
B
THR
12
B
GLU
16
B
GLU
16
B
GLN
2
B
GLN
2
B
THR
7
B
THR
7
B
THR
66
B
THR
66
B
LEU
71
B
LEU
71
B
GLN
41
B
GLN
41
B
PHE
45
B
PHE
45
B
LYS
48
B
LYS
48
B
GLN
49
B
GLN
49
4
P 1 21 1