0.023385
0.000000
0.000000
0.000000
0.023385
0.000000
0.000000
0.000000
0.015206
0.00000
0.00000
0.00000
Pandey, N.
Mirza, Z.
Vikram, G.
Singh, N.
Bhushan, A.
Kaur, P.
Srinivasan, A.
Sharma, S.
Singh, T.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
42.762
42.762
65.765
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
To be Published
0353
Crystal structure of the complex formed between Phospholipase A2 with beta-amyloid fragment, Lys-Gly-Ala-Ile-Ile-Gly-Leu-Met at 1.8 A resolution
10.2210/pdb3jti/pdb
pdb_00003jti
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
Mirror
IMAGE PLATE
2008-04-19
MARRESEARCH
Graphite
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
13128.515
Phospholipase A2 isoform 3
3.1.1.4
1
nat
polymer
803.046
octapeptide from Amyloid beta A4 protein
UNP residues 699-706
1
syn
polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
95
nat
water
Phosphatidylcholine 2-acylhydrolase
P3(40)
no
no
NLYQFKNMIQCTVPSRSWADFADYGCYCGKGGSGTPVDDLDRCCQTHDNCYNEAENISGCRPYFKTYSYECTQGTLTCKG
DNNACAASVCDCDRLAAICFAGAPYNDANYNIDLKARCN
NLYQFKNMIQCTVPSRSWADFADYGCYCGKGGSGTPVDDLDRCCQTHDNCYNEAENISGCRPYFKTYSYECTQGTLTCKG
DNNACAASVCDCDRLAAICFAGAPYNDANYNIDLKARCN
A
polypeptide(L)
no
no
KGAIIGLM
KGAIIGLM
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Andaman cobra
sample
195058
Naja sagittifera
1
2.16
43.00
VAPOR DIFFUSION, HANGING DROP
6.0
10MM SODIUM PHOSPHATE, 1mM CACL2, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
290
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-07-21
1
1
2011-07-13
1
2
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
complex with heptapeptide
RCSB
Y
PDBJ
2009-09-12
REL
REL
CA
CALCIUM ION
HOH
water
THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED.
9606
human
HOMO SAPIENS
sample
IN CHAIN A, RESIDUE NUMBER 16 IS SIMPLY SKIPPED.
THE AUTHORS BELIEVE THAT THE SEQRES IS CORRECT AND THESE
MUTATIONS ARE PRESENT IN THE DEPOSITED SEQUENCE.
3GCI
PDB ENTRY 3GCI
PDB
experimental model
CA
201
3
CA
CA
201
A
HOH
202
4
HOH
HOH
202
A
HOH
203
4
HOH
HOH
203
A
HOH
204
4
HOH
HOH
204
A
HOH
205
4
HOH
HOH
205
A
HOH
206
4
HOH
HOH
206
A
HOH
207
4
HOH
HOH
207
A
HOH
208
4
HOH
HOH
208
A
HOH
209
4
HOH
HOH
209
A
HOH
210
4
HOH
HOH
210
A
HOH
212
4
HOH
HOH
212
A
HOH
213
4
HOH
HOH
213
A
HOH
214
4
HOH
HOH
214
A
HOH
215
4
HOH
HOH
215
A
HOH
217
4
HOH
HOH
217
A
HOH
218
4
HOH
HOH
218
A
HOH
219
4
HOH
HOH
219
A
HOH
220
4
HOH
HOH
220
A
HOH
221
4
HOH
HOH
221
A
HOH
222
4
HOH
HOH
222
A
HOH
223
4
HOH
HOH
223
A
HOH
224
4
HOH
HOH
224
A
HOH
225
4
HOH
HOH
225
A
HOH
226
4
HOH
HOH
226
A
HOH
227
4
HOH
HOH
227
A
HOH
228
4
HOH
HOH
228
A
HOH
229
4
HOH
HOH
229
A
HOH
230
4
HOH
HOH
230
A
HOH
231
4
HOH
HOH
231
A
HOH
232
4
HOH
HOH
232
A
HOH
233
4
HOH
HOH
233
A
HOH
234
4
HOH
HOH
234
A
HOH
235
4
HOH
HOH
235
A
HOH
236
4
HOH
HOH
236
A
HOH
237
4
HOH
HOH
237
A
HOH
238
4
HOH
HOH
238
A
HOH
239
4
HOH
HOH
239
A
HOH
240
4
HOH
HOH
240
A
HOH
241
4
HOH
HOH
241
A
HOH
242
4
HOH
HOH
242
A
HOH
243
4
HOH
HOH
243
A
HOH
245
4
HOH
HOH
245
A
HOH
246
4
HOH
HOH
246
A
HOH
247
4
HOH
HOH
247
A
HOH
248
4
HOH
HOH
248
A
HOH
249
4
HOH
HOH
249
A
HOH
250
4
HOH
HOH
250
A
HOH
251
4
HOH
HOH
251
A
HOH
252
4
HOH
HOH
252
A
HOH
254
4
HOH
HOH
254
A
HOH
255
4
HOH
HOH
255
A
HOH
257
4
HOH
HOH
257
A
HOH
258
4
HOH
HOH
258
A
HOH
259
4
HOH
HOH
259
A
HOH
260
4
HOH
HOH
260
A
HOH
261
4
HOH
HOH
261
A
HOH
262
4
HOH
HOH
262
A
HOH
263
4
HOH
HOH
263
A
HOH
264
4
HOH
HOH
264
A
HOH
265
4
HOH
HOH
265
A
HOH
266
4
HOH
HOH
266
A
HOH
267
4
HOH
HOH
267
A
HOH
268
4
HOH
HOH
268
A
HOH
269
4
HOH
HOH
269
A
HOH
270
4
HOH
HOH
270
A
HOH
271
4
HOH
HOH
271
A
HOH
272
4
HOH
HOH
272
A
HOH
273
4
HOH
HOH
273
A
HOH
274
4
HOH
HOH
274
A
HOH
275
4
HOH
HOH
275
A
HOH
276
4
HOH
HOH
276
A
HOH
277
4
HOH
HOH
277
A
HOH
278
4
HOH
HOH
278
A
HOH
280
4
HOH
HOH
280
A
HOH
281
4
HOH
HOH
281
A
HOH
282
4
HOH
HOH
282
A
HOH
283
4
HOH
HOH
283
A
HOH
284
4
HOH
HOH
284
A
HOH
285
4
HOH
HOH
285
A
HOH
286
4
HOH
HOH
286
A
HOH
289
4
HOH
HOH
289
A
HOH
290
4
HOH
HOH
290
A
HOH
292
4
HOH
HOH
292
A
HOH
293
4
HOH
HOH
293
A
HOH
294
4
HOH
HOH
294
A
HOH
295
4
HOH
HOH
295
A
HOH
296
4
HOH
HOH
296
A
HOH
297
4
HOH
HOH
297
A
HOH
298
4
HOH
HOH
298
A
HOH
299
4
HOH
HOH
299
A
HOH
300
4
HOH
HOH
300
A
HOH
301
4
HOH
HOH
301
A
HOH
302
4
HOH
HOH
302
A
HOH
303
4
HOH
HOH
303
A
HOH
279
4
HOH
HOH
279
B
HOH
305
4
HOH
HOH
305
B
ASN
1
n
1
ASN
1
A
LEU
2
n
2
LEU
2
A
TYR
3
n
3
TYR
3
A
GLN
4
n
4
GLN
4
A
PHE
5
n
5
PHE
5
A
LYS
6
n
6
LYS
6
A
ASN
7
n
7
ASN
7
A
MET
8
n
8
MET
8
A
ILE
9
n
9
ILE
9
A
GLN
10
n
10
GLN
10
A
CYS
11
n
11
CYS
11
A
THR
12
n
12
THR
12
A
VAL
13
n
13
VAL
13
A
PRO
14
n
14
PRO
14
A
SER
15
n
15
SER
15
A
ARG
17
n
16
ARG
17
A
SER
18
n
17
SER
18
A
TRP
19
n
18
TRP
19
A
ALA
20
n
19
ALA
20
A
ASP
21
n
20
ASP
21
A
PHE
22
n
21
PHE
22
A
ALA
23
n
22
ALA
23
A
ASP
24
n
23
ASP
24
A
TYR
25
n
24
TYR
25
A
GLY
26
n
25
GLY
26
A
CYS
27
n
26
CYS
27
A
TYR
28
n
27
TYR
28
A
CYS
29
n
28
CYS
29
A
GLY
30
n
29
GLY
30
A
LYS
31
n
30
LYS
31
A
GLY
32
n
31
GLY
32
A
GLY
33
n
32
GLY
33
A
SER
34
n
33
SER
34
A
GLY
35
n
34
GLY
35
A
THR
36
n
35
THR
36
A
PRO
37
n
36
PRO
37
A
VAL
38
n
37
VAL
38
A
ASP
39
n
38
ASP
39
A
ASP
40
n
39
ASP
40
A
LEU
41
n
40
LEU
41
A
ASP
42
n
41
ASP
42
A
ARG
43
n
42
ARG
43
A
CYS
44
n
43
CYS
44
A
CYS
45
n
44
CYS
45
A
GLN
46
n
45
GLN
46
A
THR
47
n
46
THR
47
A
HIS
48
n
47
HIS
48
A
ASP
49
n
48
ASP
49
A
ASN
50
n
49
ASN
50
A
CYS
51
n
50
CYS
51
A
TYR
52
n
51
TYR
52
A
ASN
53
n
52
ASN
53
A
GLU
54
n
53
GLU
54
A
ALA
55
n
54
ALA
55
A
GLU
56
n
55
GLU
56
A
ASN
57
n
56
ASN
57
A
ILE
58
n
57
ILE
58
A
SER
59
n
58
SER
59
A
GLY
60
n
59
GLY
60
A
CYS
61
n
60
CYS
61
A
ARG
62
n
61
ARG
62
A
PRO
63
n
62
PRO
63
A
TYR
64
n
63
TYR
64
A
PHE
65
n
64
PHE
65
A
LYS
66
n
65
LYS
66
A
THR
67
n
66
THR
67
A
TYR
68
n
67
TYR
68
A
SER
69
n
68
SER
69
A
TYR
70
n
69
TYR
70
A
GLU
71
n
70
GLU
71
A
CYS
72
n
71
CYS
72
A
THR
73
n
72
THR
73
A
GLN
74
n
73
GLN
74
A
GLY
75
n
74
GLY
75
A
THR
76
n
75
THR
76
A
LEU
77
n
76
LEU
77
A
THR
78
n
77
THR
78
A
CYS
79
n
78
CYS
79
A
LYS
80
n
79
LYS
80
A
GLY
81
n
80
GLY
81
A
ASP
82
n
81
ASP
82
A
ASN
83
n
82
ASN
83
A
ASN
84
n
83
ASN
84
A
ALA
85
n
84
ALA
85
A
CYS
86
n
85
CYS
86
A
ALA
87
n
86
ALA
87
A
ALA
88
n
87
ALA
88
A
SER
89
n
88
SER
89
A
VAL
90
n
89
VAL
90
A
CYS
91
n
90
CYS
91
A
ASP
92
n
91
ASP
92
A
CYS
93
n
92
CYS
93
A
ASP
94
n
93
ASP
94
A
ARG
95
n
94
ARG
95
A
LEU
96
n
95
LEU
96
A
ALA
97
n
96
ALA
97
A
ALA
98
n
97
ALA
98
A
ILE
99
n
98
ILE
99
A
CYS
100
n
99
CYS
100
A
PHE
101
n
100
PHE
101
A
ALA
102
n
101
ALA
102
A
GLY
103
n
102
GLY
103
A
ALA
104
n
103
ALA
104
A
PRO
105
n
104
PRO
105
A
TYR
106
n
105
TYR
106
A
ASN
107
n
106
ASN
107
A
ASP
108
n
107
ASP
108
A
ALA
109
n
108
ALA
109
A
ASN
110
n
109
ASN
110
A
TYR
111
n
110
TYR
111
A
ASN
112
n
111
ASN
112
A
ILE
113
n
112
ILE
113
A
ASP
114
n
113
ASP
114
A
LEU
115
n
114
LEU
115
A
LYS
116
n
115
LYS
116
A
ALA
117
n
116
ALA
117
A
ARG
118
n
117
ARG
118
A
CYS
119
n
118
CYS
119
A
ASN
120
n
119
ASN
120
A
LYS
1
n
1
LYS
1
B
GLY
2
n
2
GLY
2
B
ALA
3
n
3
ALA
3
B
ILE
4
n
4
ILE
4
B
ILE
5
n
5
ILE
5
B
GLY
6
n
6
GLY
6
B
LEU
7
n
7
LEU
7
B
MET
8
n
8
MET
8
B
author_and_software_defined_assembly
PISA
2
dimeric
990
-8
6820
A
TYR
28
A
O
TYR
27
1_555
A
CA
201
C
CA
CA
1_555
A
GLY
30
A
O
GLY
29
1_555
85.4
A
TYR
28
A
O
TYR
27
1_555
A
CA
201
C
CA
CA
1_555
A
GLY
32
A
O
GLY
31
1_555
78.4
A
GLY
30
A
O
GLY
29
1_555
A
CA
201
C
CA
CA
1_555
A
GLY
32
A
O
GLY
31
1_555
84.4
A
TYR
28
A
O
TYR
27
1_555
A
CA
201
C
CA
CA
1_555
A
ASP
49
A
OD2
ASP
48
1_555
64.8
A
GLY
30
A
O
GLY
29
1_555
A
CA
201
C
CA
CA
1_555
A
ASP
49
A
OD2
ASP
48
1_555
150.1
A
GLY
32
A
O
GLY
31
1_555
A
CA
201
C
CA
CA
1_555
A
ASP
49
A
OD2
ASP
48
1_555
88.0
A
TYR
28
A
O
TYR
27
1_555
A
CA
201
C
CA
CA
1_555
A
ASP
49
A
OD1
ASP
48
1_555
82.2
A
GLY
30
A
O
GLY
29
1_555
A
CA
201
C
CA
CA
1_555
A
ASP
49
A
OD1
ASP
48
1_555
134.2
A
GLY
32
A
O
GLY
31
1_555
A
CA
201
C
CA
CA
1_555
A
ASP
49
A
OD1
ASP
48
1_555
134.8
A
ASP
49
A
OD2
ASP
48
1_555
A
CA
201
C
CA
CA
1_555
A
ASP
49
A
OD1
ASP
48
1_555
46.8
A
TYR
28
A
O
TYR
27
1_555
A
CA
201
C
CA
CA
1_555
A
HOH
221
D
O
HOH
1_555
115.2
A
GLY
30
A
O
GLY
29
1_555
A
CA
201
C
CA
CA
1_555
A
HOH
221
D
O
HOH
1_555
148.5
A
GLY
32
A
O
GLY
31
1_555
A
CA
201
C
CA
CA
1_555
A
HOH
221
D
O
HOH
1_555
77.4
A
ASP
49
A
OD2
ASP
48
1_555
A
CA
201
C
CA
CA
1_555
A
HOH
221
D
O
HOH
1_555
55.3
A
ASP
49
A
OD1
ASP
48
1_555
A
CA
201
C
CA
CA
1_555
A
HOH
221
D
O
HOH
1_555
74.7
A
TYR
28
A
O
TYR
27
1_555
A
CA
201
C
CA
CA
1_555
B
LEU
7
B
O
LEU
7
1_555
132.3
A
GLY
30
A
O
GLY
29
1_555
A
CA
201
C
CA
CA
1_555
B
LEU
7
B
O
LEU
7
1_555
71.7
A
GLY
32
A
O
GLY
31
1_555
A
CA
201
C
CA
CA
1_555
B
LEU
7
B
O
LEU
7
1_555
137.1
A
ASP
49
A
OD2
ASP
48
1_555
A
CA
201
C
CA
CA
1_555
B
LEU
7
B
O
LEU
7
1_555
129.4
A
ASP
49
A
OD1
ASP
48
1_555
A
CA
201
C
CA
CA
1_555
B
LEU
7
B
O
LEU
7
1_555
84.8
A
HOH
221
D
O
HOH
1_555
A
CA
201
C
CA
CA
1_555
B
LEU
7
B
O
LEU
7
1_555
105.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
25
A
N
TYR
24
A
O
CYS
29
A
O
CYS
28
A
N
GLU
71
A
N
GLU
70
A
O
THR
78
A
O
THR
77
1
B
B
GLY
ALA
2
3
-137.62
1
-9.82
1.60
122.70
112.88
A
A
A
O
C
N
SER
SER
ARG
15
15
17
Y
1
22.30
2.50
121.70
144.00
B
B
B
C
N
CA
GLY
ALA
ALA
2
3
3
Y
1
A
SER
15
-71.80
43.32
1
A
ARG
17
178.61
135.66
1
B
ALA
3
-115.90
-72.16
1
B
ILE
4
-154.33
-158.51
1
B
ILE
5
-142.43
-65.65
34.703
-0.23
0.00
0.00
-0.23
0.00
0.46
0.962
0.951
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.21019
0.17097
0.17291
1.80
35.85
522
10374
10374
4.8
98.42
2.662
0.083
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.131
0.124
0.80
0.80
1.40
PDB ENTRY 3GCI
MAXIMUM LIKELIHOOD
MASK
1.80
35.85
95
1059
1
0
963
0.024
0.022
987
1.980
1.936
1337
6.680
5.000
124
33.683
24.898
49
16.432
15.000
150
17.208
15.000
5
0.139
0.200
138
0.010
0.021
769
1.393
1.500
625
2.725
2.000
989
4.133
3.000
362
6.370
4.500
348
0.535
0.342
1.844
27
761
20
96.33
1.8
42.8
3JTI
10374
10374
0.0
0.0
0.042
1
14.4
98.4
1.76
1.8
3.0
0.164
96.8
data collection
HKL-2000
phasing
AMoRE
refinement
REFMAC
5.5.0072
data reduction
DENZO
data scaling
SCALEPACK
Crystal structure of the complex formed between Phospholipase A2 with beta-amyloid fragment, Lys-Gly-Ala-Ile-Ile-Gly-Leu-Met at 1.8 A resolution
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
ASN
1
A
ASN
1
HELX_P
A
VAL
13
A
VAL
13
1
1
13
A
SER
18
A
SER
17
HELX_P
A
PHE
22
A
PHE
21
5
2
5
A
ASP
39
A
ASP
38
HELX_P
A
GLU
56
A
GLU
55
1
3
18
A
ASN
84
A
ASN
83
HELX_P
A
ALA
104
A
ALA
103
1
4
21
A
ASN
107
A
ASN
106
HELX_P
A
TYR
111
A
TYR
110
5
5
5
A
ASP
114
A
ASP
113
HELX_P
A
CYS
119
A
CYS
118
1
6
6
disulf
2.064
A
CYS
11
A
SG
CYS
11
1_555
A
CYS
72
A
SG
CYS
71
1_555
disulf
1.996
A
CYS
27
A
SG
CYS
26
1_555
A
CYS
119
A
SG
CYS
118
1_555
disulf
2.065
A
CYS
29
A
SG
CYS
28
1_555
A
CYS
45
A
SG
CYS
44
1_555
disulf
2.062
A
CYS
44
A
SG
CYS
43
1_555
A
CYS
100
A
SG
CYS
99
1_555
disulf
2.078
A
CYS
51
A
SG
CYS
50
1_555
A
CYS
93
A
SG
CYS
92
1_555
disulf
2.011
A
CYS
61
A
SG
CYS
60
1_555
A
CYS
86
A
SG
CYS
85
1_555
disulf
2.075
A
CYS
79
A
SG
CYS
78
1_555
A
CYS
91
A
SG
CYS
90
1_555
metalc
2.642
A
TYR
28
A
O
TYR
27
1_555
A
CA
201
C
CA
CA
1_555
metalc
2.520
A
GLY
30
A
O
GLY
29
1_555
A
CA
201
C
CA
CA
1_555
metalc
2.292
A
GLY
32
A
O
GLY
31
1_555
A
CA
201
C
CA
CA
1_555
metalc
2.649
A
ASP
49
A
OD2
ASP
48
1_555
A
CA
201
C
CA
CA
1_555
metalc
2.829
A
ASP
49
A
OD1
ASP
48
1_555
A
CA
201
C
CA
CA
1_555
metalc
2.789
A
CA
201
C
CA
CA
1_555
A
HOH
221
D
O
HOH
1_555
metalc
2.399
A
CA
201
C
CA
CA
1_555
B
LEU
7
B
O
LEU
7
1_555
HYDROLASE
PHOSPHOLIPASE A2, HEPTAPEPTIDE, AMYLOID BETA, HYDROLASE, LIPID DEGRADATION, Disulfide bond, Metal-binding, Secreted, Amyloid, Amyloidosis, Protease inhibitor, Proteoglycan, Serine protease inhibitor
B
ILE
4
B
ILE
4
1
B
ILE
5
B
ILE
5
-6.98
B
GLY
6
B
GLY
6
1
B
LEU
7
B
LEU
7
-18.64
PA23_NAJSG
UNP
1
8
P60045
NLYQFKNMIQCTVPSRSWQDFADYGCYCGKGGSGTPVDDLDRCCQVHDNCYNEAENISGCRPYFKTYSYECTQGTLTCKG
DNNACAASVCDCDRLAAICFAGAPYNDANYNIDLKARCN
A4_HUMAN
UNP
2
699
P05067
KGAIIGLM
8
126
3JTI
1
120
P60045
A
1
1
119
699
706
3JTI
1
8
P05067
B
2
1
8
1
GLN
SEE REMARK 999
ALA
20
3JTI
A
P60045
UNP
26
19
1
VAL
SEE REMARK 999
THR
47
3JTI
A
P60045
UNP
53
46
2
2
anti-parallel
anti-parallel
A
ASP
24
A
ASP
23
A
TYR
25
A
TYR
24
A
CYS
29
A
CYS
28
A
GLY
30
A
GLY
29
A
TYR
70
A
TYR
69
A
THR
73
A
THR
72
A
THR
76
A
THR
75
A
CYS
79
A
CYS
78
BINDING SITE FOR RESIDUE CA A 201
A
CA
201
Software
7
A
TYR
28
A
TYR
27
7
1_555
A
GLY
30
A
GLY
29
7
1_555
A
GLY
32
A
GLY
31
7
1_555
A
ASP
49
A
ASP
48
7
1_555
A
HOH
221
D
HOH
7
1_555
B
LEU
7
B
LEU
7
7
1_555
B
MET
8
B
MET
8
7
1_555
76
P 41