0.019037
0.010991
0.000000
0.000000
0.021982
0.000000
0.000000
0.000000
0.012583
0.00000
0.00000
0.00000
Szwagierczak, A.
Antonenka, U.
Popowicz, G.M.
Sitar, T.
Holak, T.A.
Rakin, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
52.530
52.530
79.470
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
N
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
284
31664
31671
10.1074/jbc.M109.059261
19737930
Structures of the arm-type binding domains of HPI and HAI7 integrases
2009
10.2210/pdb3ju0/pdb
pdb_00003ju0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirror
CCD
2009-07-17
MARMOSAIC 225 mm CCD
diamond
SINGLE WAVELENGTH
M
x-ray
1
1.0015
1.0
X10SA
SLS
1.0015
SYNCHROTRON
SLS BEAMLINE X10SA
12528.367
Phage integrase
Arm-type binding domain, UNP residues 1-100
1
man
polymer
18.015
water
129
nat
water
no
no
MSLTDSKVKNAKSLEKEYKLTDGFGMHLLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLAAGID
PSAKKQADNKTIQEKRNNTRLEHHHHHH
MSLTDSKVKNAKSLEKEYKLTDGFGMHLLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLAAGID
PSAKKQADNKTIQEKRNNTRLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Pectobacterium atrosepticum
sample
intB, ECA1679
29471
Pectobacterium atrosepticum
562
Escherichia coli
BL21(DE3)
plasmid
pET21
1
2.53
51.31
VAPOR DIFFUSION, SITTING DROP
6.3
0.1M MES, pH6.3, 2.8M ammonium sulphate, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Version format compliance
Database references
Refinement description
Data collection
Database references
Refinement description
1
0
2009-10-06
1
1
2011-07-13
1
2
2013-01-16
1
3
2017-11-01
1
4
2023-11-01
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Arm-type binding domain of HPI Integrase
RCSB
Y
PDBJ
2009-09-14
REL
REL
HOH
water
3JTZ
PDB ENTRY 3JTZ
PDB
experimental model
HOH
109
2
HOH
HOH
109
A
HOH
110
2
HOH
HOH
110
A
HOH
111
2
HOH
HOH
111
A
HOH
112
2
HOH
HOH
112
A
HOH
113
2
HOH
HOH
113
A
HOH
114
2
HOH
HOH
114
A
HOH
115
2
HOH
HOH
115
A
HOH
116
2
HOH
HOH
116
A
HOH
117
2
HOH
HOH
117
A
HOH
118
2
HOH
HOH
118
A
HOH
119
2
HOH
HOH
119
A
HOH
120
2
HOH
HOH
120
A
HOH
121
2
HOH
HOH
121
A
HOH
122
2
HOH
HOH
122
A
HOH
123
2
HOH
HOH
123
A
HOH
124
2
HOH
HOH
124
A
HOH
125
2
HOH
HOH
125
A
HOH
126
2
HOH
HOH
126
A
HOH
127
2
HOH
HOH
127
A
HOH
128
2
HOH
HOH
128
A
HOH
129
2
HOH
HOH
129
A
HOH
130
2
HOH
HOH
130
A
HOH
1
2
HOH
HOH
131
A
HOH
2
2
HOH
HOH
132
A
HOH
3
2
HOH
HOH
133
A
HOH
4
2
HOH
HOH
134
A
HOH
5
2
HOH
HOH
135
A
HOH
6
2
HOH
HOH
136
A
HOH
7
2
HOH
HOH
137
A
HOH
8
2
HOH
HOH
138
A
HOH
9
2
HOH
HOH
139
A
HOH
10
2
HOH
HOH
140
A
HOH
11
2
HOH
HOH
141
A
HOH
12
2
HOH
HOH
142
A
HOH
13
2
HOH
HOH
143
A
HOH
14
2
HOH
HOH
144
A
HOH
15
2
HOH
HOH
145
A
HOH
16
2
HOH
HOH
146
A
HOH
17
2
HOH
HOH
147
A
HOH
18
2
HOH
HOH
148
A
HOH
19
2
HOH
HOH
149
A
HOH
20
2
HOH
HOH
150
A
HOH
21
2
HOH
HOH
151
A
HOH
22
2
HOH
HOH
152
A
HOH
23
2
HOH
HOH
153
A
HOH
24
2
HOH
HOH
154
A
HOH
25
2
HOH
HOH
155
A
HOH
26
2
HOH
HOH
156
A
HOH
27
2
HOH
HOH
157
A
HOH
28
2
HOH
HOH
158
A
HOH
29
2
HOH
HOH
159
A
HOH
30
2
HOH
HOH
160
A
HOH
31
2
HOH
HOH
161
A
HOH
32
2
HOH
HOH
162
A
HOH
33
2
HOH
HOH
163
A
HOH
34
2
HOH
HOH
164
A
HOH
35
2
HOH
HOH
165
A
HOH
36
2
HOH
HOH
166
A
HOH
37
2
HOH
HOH
167
A
HOH
38
2
HOH
HOH
168
A
HOH
39
2
HOH
HOH
169
A
HOH
40
2
HOH
HOH
170
A
HOH
41
2
HOH
HOH
171
A
HOH
42
2
HOH
HOH
172
A
HOH
43
2
HOH
HOH
173
A
HOH
44
2
HOH
HOH
174
A
HOH
45
2
HOH
HOH
175
A
HOH
46
2
HOH
HOH
176
A
HOH
47
2
HOH
HOH
177
A
HOH
48
2
HOH
HOH
178
A
HOH
49
2
HOH
HOH
179
A
HOH
50
2
HOH
HOH
180
A
HOH
51
2
HOH
HOH
181
A
HOH
52
2
HOH
HOH
182
A
HOH
53
2
HOH
HOH
183
A
HOH
54
2
HOH
HOH
184
A
HOH
55
2
HOH
HOH
185
A
HOH
56
2
HOH
HOH
186
A
HOH
57
2
HOH
HOH
187
A
HOH
58
2
HOH
HOH
188
A
HOH
59
2
HOH
HOH
189
A
HOH
60
2
HOH
HOH
190
A
HOH
61
2
HOH
HOH
191
A
HOH
62
2
HOH
HOH
192
A
HOH
63
2
HOH
HOH
193
A
HOH
64
2
HOH
HOH
194
A
HOH
65
2
HOH
HOH
195
A
HOH
66
2
HOH
HOH
196
A
HOH
67
2
HOH
HOH
197
A
HOH
68
2
HOH
HOH
198
A
HOH
69
2
HOH
HOH
199
A
HOH
70
2
HOH
HOH
200
A
HOH
71
2
HOH
HOH
201
A
HOH
72
2
HOH
HOH
202
A
HOH
73
2
HOH
HOH
203
A
HOH
74
2
HOH
HOH
204
A
HOH
75
2
HOH
HOH
205
A
HOH
76
2
HOH
HOH
206
A
HOH
77
2
HOH
HOH
207
A
HOH
78
2
HOH
HOH
208
A
HOH
79
2
HOH
HOH
209
A
HOH
80
2
HOH
HOH
210
A
HOH
81
2
HOH
HOH
211
A
HOH
82
2
HOH
HOH
212
A
HOH
83
2
HOH
HOH
213
A
HOH
84
2
HOH
HOH
214
A
HOH
85
2
HOH
HOH
215
A
HOH
87
2
HOH
HOH
216
A
HOH
88
2
HOH
HOH
217
A
HOH
89
2
HOH
HOH
218
A
HOH
90
2
HOH
HOH
219
A
HOH
91
2
HOH
HOH
220
A
HOH
92
2
HOH
HOH
221
A
HOH
93
2
HOH
HOH
222
A
HOH
94
2
HOH
HOH
223
A
HOH
95
2
HOH
HOH
224
A
HOH
96
2
HOH
HOH
225
A
HOH
97
2
HOH
HOH
226
A
HOH
98
2
HOH
HOH
227
A
HOH
99
2
HOH
HOH
228
A
HOH
100
2
HOH
HOH
229
A
HOH
101
2
HOH
HOH
230
A
HOH
102
2
HOH
HOH
231
A
HOH
103
2
HOH
HOH
232
A
HOH
104
2
HOH
HOH
233
A
HOH
105
2
HOH
HOH
234
A
HOH
106
2
HOH
HOH
235
A
HOH
107
2
HOH
HOH
236
A
HOH
108
2
HOH
HOH
237
A
n
1
1
A
SER
2
n
2
SER
2
A
LEU
3
n
3
LEU
3
A
THR
4
n
4
THR
4
A
ASP
5
n
5
ASP
5
A
SER
6
n
6
SER
6
A
LYS
7
n
7
LYS
7
A
VAL
8
n
8
VAL
8
A
LYS
9
n
9
LYS
9
A
ASN
10
n
10
ASN
10
A
ALA
11
n
11
ALA
11
A
LYS
12
n
12
LYS
12
A
SER
13
n
13
SER
13
A
LEU
14
n
14
LEU
14
A
GLU
15
n
15
GLU
15
A
LYS
16
n
16
LYS
16
A
GLU
17
n
17
GLU
17
A
TYR
18
n
18
TYR
18
A
LYS
19
n
19
LYS
19
A
LEU
20
n
20
LEU
20
A
THR
21
n
21
THR
21
A
ASP
22
n
22
ASP
22
A
GLY
23
n
23
GLY
23
A
PHE
24
n
24
PHE
24
A
GLY
25
n
25
GLY
25
A
MET
26
n
26
MET
26
A
HIS
27
n
27
HIS
27
A
LEU
28
n
28
LEU
28
A
LEU
29
n
29
LEU
29
A
VAL
30
n
30
VAL
30
A
HIS
31
n
31
HIS
31
A
PRO
32
n
32
PRO
32
A
ASN
33
n
33
ASN
33
A
GLY
34
n
34
GLY
34
A
SER
35
n
35
SER
35
A
LYS
36
n
36
LYS
36
A
TYR
37
n
37
TYR
37
A
TRP
38
n
38
TRP
38
A
ARG
39
n
39
ARG
39
A
LEU
40
n
40
LEU
40
A
SER
41
n
41
SER
41
A
TYR
42
n
42
TYR
42
A
ARG
43
n
43
ARG
43
A
PHE
44
n
44
PHE
44
A
GLU
45
n
45
GLU
45
A
LYS
46
n
46
LYS
46
A
LYS
47
n
47
LYS
47
A
GLN
48
n
48
GLN
48
A
ARG
49
n
49
ARG
49
A
LEU
50
n
50
LEU
50
A
LEU
51
n
51
LEU
51
A
ALA
52
n
52
ALA
52
A
LEU
53
n
53
LEU
53
A
GLY
54
n
54
GLY
54
A
VAL
55
n
55
VAL
55
A
TYR
56
n
56
TYR
56
A
PRO
57
n
57
PRO
57
A
ALA
58
n
58
ALA
58
A
VAL
59
n
59
VAL
59
A
SER
60
n
60
SER
60
A
LEU
61
n
61
LEU
61
A
ALA
62
n
62
ALA
62
A
ASP
63
n
63
ASP
63
A
ALA
64
n
64
ALA
64
A
ARG
65
n
65
ARG
65
A
GLN
66
n
66
GLN
66
A
ARG
67
n
67
ARG
67
A
ARG
68
n
68
ARG
68
A
ASP
69
n
69
ASP
69
A
GLU
70
n
70
GLU
70
A
ALA
71
n
71
ALA
71
A
LYS
72
n
72
LYS
72
A
LYS
73
n
73
LYS
73
A
LEU
74
n
74
LEU
74
A
LEU
75
n
75
LEU
75
A
ALA
76
n
76
ALA
76
A
ALA
77
n
77
ALA
77
A
GLY
78
n
78
GLY
78
A
ILE
79
n
79
ILE
79
A
ASP
80
n
80
ASP
80
A
PRO
81
n
81
PRO
81
A
SER
82
n
82
SER
82
A
ALA
83
n
83
ALA
83
A
LYS
84
n
84
LYS
84
A
LYS
85
n
85
LYS
85
A
GLN
86
n
86
GLN
86
A
ALA
87
n
87
ALA
87
A
ASP
88
n
88
ASP
88
A
ASN
89
n
89
ASN
89
A
LYS
90
n
90
LYS
90
A
THR
91
n
91
THR
91
A
ILE
92
n
92
ILE
92
A
GLN
93
n
93
GLN
93
A
GLU
94
n
94
GLU
94
A
LYS
95
n
95
LYS
95
A
ARG
96
n
96
ARG
96
A
n
97
97
A
n
98
98
A
n
99
99
A
n
100
100
A
n
101
101
A
n
102
102
A
n
103
103
A
n
104
104
A
n
105
105
A
n
106
106
A
n
107
107
A
n
108
108
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
18
A
N
TYR
18
A
O
VAL
30
A
O
VAL
30
A
N
LEU
29
A
N
LEU
29
A
O
TYR
37
A
O
TYR
37
A
N
TYR
42
A
N
TYR
42
A
O
ARG
49
A
O
ARG
49
1
A
CE
LYS
7
A
CE
LYS
7
1
Y
1
A
NZ
LYS
7
A
NZ
LYS
7
1
Y
1
A
CE
LYS
16
A
CE
LYS
16
1
Y
1
A
NZ
LYS
16
A
NZ
LYS
16
1
Y
1
A
CD
LYS
46
A
CD
LYS
46
1
Y
1
A
CE
LYS
46
A
CE
LYS
46
1
Y
1
A
NZ
LYS
46
A
NZ
LYS
46
1
Y
1
A
CE
LYS
47
A
CE
LYS
47
1
Y
1
A
NZ
LYS
47
A
NZ
LYS
47
1
Y
1
A
CZ
ARG
49
A
CZ
ARG
49
1
Y
1
A
NH1
ARG
49
A
NH1
ARG
49
1
Y
1
A
NH2
ARG
49
A
NH2
ARG
49
1
Y
1
A
CD
LYS
90
A
CD
LYS
90
1
Y
1
A
CE
LYS
90
A
CE
LYS
90
1
Y
1
A
NZ
LYS
90
A
NZ
LYS
90
1
Y
1
A
CG
GLN
93
A
CG
GLN
93
1
Y
1
A
CD
GLN
93
A
CD
GLN
93
1
Y
1
A
OE1
GLN
93
A
OE1
GLN
93
1
Y
1
A
NE2
GLN
93
A
NE2
GLN
93
1
Y
1
A
CE
LYS
95
A
CE
LYS
95
1
Y
1
A
NZ
LYS
95
A
NZ
LYS
95
1
Y
1
A
NE
ARG
96
A
NE
ARG
96
1
Y
1
A
CZ
ARG
96
A
CZ
ARG
96
1
Y
1
A
NH1
ARG
96
A
NH1
ARG
96
1
Y
1
A
NH2
ARG
96
A
NH2
ARG
96
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
ASN
97
A
ASN
97
1
Y
1
A
ASN
98
A
ASN
98
1
Y
1
A
THR
99
A
THR
99
1
Y
1
A
ARG
100
A
ARG
100
1
Y
1
A
LEU
101
A
LEU
101
1
Y
1
A
GLU
102
A
GLU
102
1
Y
1
A
HIS
103
A
HIS
103
1
Y
1
A
HIS
104
A
HIS
104
1
Y
1
A
HIS
105
A
HIS
105
1
Y
1
A
HIS
106
A
HIS
106
1
Y
1
A
HIS
107
A
HIS
107
1
Y
1
A
HIS
108
A
HIS
108
1
Y
1
A
A
O
O
HOH
HOH
129
229
2.10
1
A
A
NZ
O
LYS
HOH
12
129
2.11
1
A
A
NH2
O
ARG
HOH
39
235
2.11
1
A
A
GLU
LYS
45
46
-41.39
1
6.17
0.50
120.30
126.47
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
39
39
39
N
1
-9.03
0.50
120.30
111.27
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
39
39
39
N
1
-14.06
2.30
111.70
97.64
A
A
A
CD
CE
NZ
LYS
LYS
LYS
73
73
73
N
1
A
A
CZ
NH1
ARG
ARG
39
39
0.100
0.013
1.326
1.426
N
1
A
A
CG
CD
LYS
LYS
72
72
-0.212
0.034
1.520
1.308
N
1
A
LEU
14
-116.56
-163.94
23.278
0.35
0.17
0.00
0.35
0.00
-0.52
0.968
0.935
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.21211
0.14757
0.15065
1.60
6.00
750
16471
14113
5.0
92.28
2.630
0.044
RANDOM
1
THROUGHOUT
2
MOLECULAR REPLACEMENT
0.091
0.088
0.80
0.80
1.40
PDB ENTRY 3JTZ
MAXIMUM LIKELIHOOD
MASK
1.60
6.00
129
866
0
0
737
0.025
0.022
749
0.002
0.020
699
2.051
1.977
1006
0.814
3.000
1623
19.108
5.000
94
23.512
23.871
31
16.217
15.000
141
17.330
15.000
5
0.120
0.200
111
0.010
0.020
822
0.000
0.020
146
2.420
1.500
472
1.163
1.500
194
3.695
2.000
749
4.916
3.000
277
7.255
4.500
257
2.458
3.000
1448
11.306
3.000
129
5.754
3.000
1436
0.149
0.084
1.639
41
812
20
74.30
1.6
6.0
3JU0
16471
15089
2
2
0.027
1
30.67
91.6
0.107
1.6
1.7
9.31
1
76
data collection
MAR345
phasing
MOLREP
refinement
REFMAC
5.5.0066
data reduction
XDS
data scaling
XSCALE
Structure of the arm-type binding domain of HAI7 integrase
1
N
N
2
N
N
A
THR
4
A
THR
4
HELX_P
A
ALA
11
A
ALA
11
1
1
8
A
SER
60
A
SER
60
HELX_P
A
ALA
77
A
ALA
77
1
2
18
A
ASP
80
A
ASP
80
HELX_P
A
LYS
84
A
LYS
84
5
3
5
A
LYS
85
A
LYS
85
HELX_P
A
ASN
89
A
ASN
89
5
4
5
A
THR
91
A
THR
91
HELX_P
A
ARG
96
A
ARG
96
1
5
6
DNA BINDING PROTEIN
four stranded beta-sheet, DNA BINDING PROTEIN
A
TYR
56
A
TYR
56
1
A
PRO
57
A
PRO
57
9.92
Q6D6K1_ERWCT
UNP
1
1
Q6D6K1
MSLTDSKVKNAKSLEKEYKLTDGFGMHLLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLAAGID
PSAKKQADNKTIQEKRNNTR
1
100
3JU0
1
100
Q6D6K1
A
1
1
100
1
expression tag
LEU
101
3JU0
A
Q6D6K1
UNP
101
1
expression tag
GLU
102
3JU0
A
Q6D6K1
UNP
102
1
expression tag
HIS
103
3JU0
A
Q6D6K1
UNP
103
1
expression tag
HIS
104
3JU0
A
Q6D6K1
UNP
104
1
expression tag
HIS
105
3JU0
A
Q6D6K1
UNP
105
1
expression tag
HIS
106
3JU0
A
Q6D6K1
UNP
106
1
expression tag
HIS
107
3JU0
A
Q6D6K1
UNP
107
1
expression tag
HIS
108
3JU0
A
Q6D6K1
UNP
108
4
anti-parallel
anti-parallel
anti-parallel
A
TYR
18
A
TYR
18
A
GLY
23
A
GLY
23
A
MET
26
A
MET
26
A
VAL
30
A
VAL
30
A
LYS
36
A
LYS
36
A
PHE
44
A
PHE
44
A
LYS
47
A
LYS
47
A
TYR
56
A
TYR
56
170
P 65