0.026865
0.000000
0.000000
0.000000
0.014528
0.000000
0.000000
0.000000
0.010824
0.00000
0.00000
0.00000
Schonbrunn, E.
Phan, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
37.223
68.832
92.391
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
285
2174
2183
10.1074/jbc.M109.073056
19910468
Structure-based design of high affinity peptides inhibiting the interaction of p53 with MDM2 and MDMX.
2010
10.2210/pdb3jzr/pdb
pdb_00003jzr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
93
1
mirrors
IMAGE PLATE
RIGAKU RAXIS HTC
mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU MICROMAX-007 HF
12592.401
E3 ubiquitin-protein ligase Mdm2
6.3.2.-
1
man
polymer
1519.677
pDI6W peptide (12mer)
1
syn
polymer
18.015
water
116
nat
water
p53-binding protein Mdm2, Oncoprotein Mdm2, Double minute 2 protein, Hdm2
no
no
GSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKE
HRKIYTMIYRNLVVVNQQESSDSGTSVSEN
GSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKE
HRKIYTMIYRNLVVVNQQESSDSGTSVSEN
A
polypeptide(L)
no
no
LTFEHWWAQLTS
LTFEHWWAQLTS
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
MDM2
9606
Homo sapiens
562
Escherichia coli
BL21-Gold (DE3) pLysS
plasmid
pGEX2T
1
2.10
41.34
VAPOR DIFFUSION, HANGING DROP
8.0
2.2 M DL-Malic acid, 100 mM Tris HCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
292
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Version format compliance
Data collection
Database references
Refinement description
1
0
2009-11-10
1
1
2011-07-13
1
2
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
MDMX liganded with pDI
MDMX liganded with pDI6W
MDMX liganded with pDIQ
RCSB
Y
RCSB
2009-09-24
REL
REL
HOH
water
1T4F
pdb entry 1T4F
PDB
experimental model
WAT
1
3
HOH
HOH
1
A
WAT
3
3
HOH
HOH
3
A
WAT
4
3
HOH
HOH
4
A
WAT
5
3
HOH
HOH
5
A
WAT
8
3
HOH
HOH
8
A
WAT
10
3
HOH
HOH
10
A
WAT
11
3
HOH
HOH
11
A
WAT
12
3
HOH
HOH
12
A
WAT
15
3
HOH
HOH
15
A
WAT
18
3
HOH
HOH
126
A
WAT
19
3
HOH
HOH
127
A
WAT
20
3
HOH
HOH
128
A
WAT
21
3
HOH
HOH
129
A
WAT
23
3
HOH
HOH
130
A
WAT
24
3
HOH
HOH
131
A
WAT
25
3
HOH
HOH
132
A
WAT
26
3
HOH
HOH
133
A
WAT
27
3
HOH
HOH
134
A
WAT
28
3
HOH
HOH
135
A
WAT
29
3
HOH
HOH
136
A
WAT
30
3
HOH
HOH
137
A
WAT
31
3
HOH
HOH
138
A
WAT
32
3
HOH
HOH
139
A
WAT
33
3
HOH
HOH
140
A
WAT
34
3
HOH
HOH
141
A
WAT
35
3
HOH
HOH
142
A
WAT
36
3
HOH
HOH
143
A
WAT
37
3
HOH
HOH
144
A
WAT
38
3
HOH
HOH
145
A
WAT
39
3
HOH
HOH
146
A
WAT
40
3
HOH
HOH
147
A
WAT
41
3
HOH
HOH
148
A
WAT
42
3
HOH
HOH
149
A
WAT
43
3
HOH
HOH
150
A
WAT
44
3
HOH
HOH
151
A
WAT
46
3
HOH
HOH
152
A
WAT
47
3
HOH
HOH
153
A
WAT
48
3
HOH
HOH
154
A
WAT
49
3
HOH
HOH
155
A
WAT
52
3
HOH
HOH
156
A
WAT
53
3
HOH
HOH
157
A
WAT
54
3
HOH
HOH
158
A
WAT
56
3
HOH
HOH
159
A
WAT
57
3
HOH
HOH
160
A
WAT
58
3
HOH
HOH
161
A
WAT
60
3
HOH
HOH
162
A
WAT
61
3
HOH
HOH
163
A
WAT
63
3
HOH
HOH
164
A
WAT
64
3
HOH
HOH
165
A
WAT
65
3
HOH
HOH
166
A
WAT
66
3
HOH
HOH
167
A
WAT
69
3
HOH
HOH
168
A
WAT
70
3
HOH
HOH
169
A
WAT
71
3
HOH
HOH
170
A
WAT
72
3
HOH
HOH
171
A
WAT
73
3
HOH
HOH
172
A
WAT
74
3
HOH
HOH
173
A
WAT
75
3
HOH
HOH
174
A
WAT
76
3
HOH
HOH
175
A
WAT
77
3
HOH
HOH
176
A
WAT
79
3
HOH
HOH
177
A
WAT
80
3
HOH
HOH
178
A
WAT
82
3
HOH
HOH
179
A
WAT
83
3
HOH
HOH
180
A
WAT
84
3
HOH
HOH
181
A
WAT
85
3
HOH
HOH
182
A
WAT
87
3
HOH
HOH
183
A
WAT
88
3
HOH
HOH
184
A
WAT
89
3
HOH
HOH
185
A
WAT
91
3
HOH
HOH
186
A
WAT
94
3
HOH
HOH
187
A
WAT
95
3
HOH
HOH
188
A
WAT
96
3
HOH
HOH
189
A
WAT
97
3
HOH
HOH
190
A
WAT
98
3
HOH
HOH
191
A
WAT
99
3
HOH
HOH
192
A
WAT
100
3
HOH
HOH
193
A
WAT
102
3
HOH
HOH
194
A
WAT
104
3
HOH
HOH
195
A
WAT
105
3
HOH
HOH
196
A
WAT
106
3
HOH
HOH
197
A
WAT
107
3
HOH
HOH
198
A
WAT
109
3
HOH
HOH
199
A
WAT
110
3
HOH
HOH
200
A
WAT
111
3
HOH
HOH
201
A
WAT
112
3
HOH
HOH
202
A
WAT
113
3
HOH
HOH
203
A
WAT
114
3
HOH
HOH
204
A
WAT
115
3
HOH
HOH
205
A
WAT
2
3
HOH
HOH
2
P
WAT
6
3
HOH
HOH
6
P
WAT
7
3
HOH
HOH
7
P
WAT
9
3
HOH
HOH
9
P
WAT
13
3
HOH
HOH
13
P
WAT
14
3
HOH
HOH
14
P
WAT
16
3
HOH
HOH
16
P
WAT
17
3
HOH
HOH
29
P
WAT
22
3
HOH
HOH
30
P
WAT
45
3
HOH
HOH
45
P
WAT
50
3
HOH
HOH
50
P
WAT
51
3
HOH
HOH
51
P
WAT
55
3
HOH
HOH
55
P
WAT
59
3
HOH
HOH
59
P
WAT
62
3
HOH
HOH
62
P
WAT
67
3
HOH
HOH
67
P
WAT
68
3
HOH
HOH
68
P
WAT
78
3
HOH
HOH
78
P
WAT
81
3
HOH
HOH
81
P
WAT
86
3
HOH
HOH
86
P
WAT
90
3
HOH
HOH
90
P
WAT
92
3
HOH
HOH
92
P
WAT
93
3
HOH
HOH
93
P
WAT
101
3
HOH
HOH
101
P
WAT
103
3
HOH
HOH
103
P
WAT
108
3
HOH
HOH
108
P
WAT
116
3
HOH
HOH
116
P
GLY
16
n
1
GLY
16
A
SER
17
n
2
SER
17
A
GLN
18
n
3
GLN
18
A
ILE
19
n
4
ILE
19
A
PRO
20
n
5
PRO
20
A
ALA
21
n
6
ALA
21
A
SER
22
n
7
SER
22
A
GLU
23
n
8
GLU
23
A
GLN
24
n
9
GLN
24
A
GLU
25
n
10
GLU
25
A
THR
26
n
11
THR
26
A
LEU
27
n
12
LEU
27
A
VAL
28
n
13
VAL
28
A
ARG
29
n
14
ARG
29
A
PRO
30
n
15
PRO
30
A
LYS
31
n
16
LYS
31
A
PRO
32
n
17
PRO
32
A
LEU
33
n
18
LEU
33
A
LEU
34
n
19
LEU
34
A
LEU
35
n
20
LEU
35
A
LYS
36
n
21
LYS
36
A
LEU
37
n
22
LEU
37
A
LEU
38
n
23
LEU
38
A
LYS
39
n
24
LYS
39
A
SER
40
n
25
SER
40
A
VAL
41
n
26
VAL
41
A
GLY
42
n
27
GLY
42
A
ALA
43
n
28
ALA
43
A
GLN
44
n
29
GLN
44
A
LYS
45
n
30
LYS
45
A
ASP
46
n
31
ASP
46
A
THR
47
n
32
THR
47
A
TYR
48
n
33
TYR
48
A
THR
49
n
34
THR
49
A
MET
50
n
35
MET
50
A
LYS
51
n
36
LYS
51
A
GLU
52
n
37
GLU
52
A
VAL
53
n
38
VAL
53
A
LEU
54
n
39
LEU
54
A
PHE
55
n
40
PHE
55
A
TYR
56
n
41
TYR
56
A
LEU
57
n
42
LEU
57
A
GLY
58
n
43
GLY
58
A
GLN
59
n
44
GLN
59
A
TYR
60
n
45
TYR
60
A
ILE
61
n
46
ILE
61
A
MET
62
n
47
MET
62
A
THR
63
n
48
THR
63
A
LYS
64
n
49
LYS
64
A
ARG
65
n
50
ARG
65
A
LEU
66
n
51
LEU
66
A
TYR
67
n
52
TYR
67
A
ASP
68
n
53
ASP
68
A
GLU
69
n
54
GLU
69
A
LYS
70
n
55
LYS
70
A
GLN
71
n
56
GLN
71
A
GLN
72
n
57
GLN
72
A
HIS
73
n
58
HIS
73
A
ILE
74
n
59
ILE
74
A
VAL
75
n
60
VAL
75
A
TYR
76
n
61
TYR
76
A
CYS
77
n
62
CYS
77
A
SER
78
n
63
SER
78
A
ASN
79
n
64
ASN
79
A
ASP
80
n
65
ASP
80
A
LEU
81
n
66
LEU
81
A
LEU
82
n
67
LEU
82
A
GLY
83
n
68
GLY
83
A
ASP
84
n
69
ASP
84
A
LEU
85
n
70
LEU
85
A
PHE
86
n
71
PHE
86
A
GLY
87
n
72
GLY
87
A
VAL
88
n
73
VAL
88
A
PRO
89
n
74
PRO
89
A
SER
90
n
75
SER
90
A
PHE
91
n
76
PHE
91
A
SER
92
n
77
SER
92
A
VAL
93
n
78
VAL
93
A
LYS
94
n
79
LYS
94
A
GLU
95
n
80
GLU
95
A
HIS
96
n
81
HIS
96
A
ARG
97
n
82
ARG
97
A
LYS
98
n
83
LYS
98
A
ILE
99
n
84
ILE
99
A
TYR
100
n
85
TYR
100
A
THR
101
n
86
THR
101
A
MET
102
n
87
MET
102
A
ILE
103
n
88
ILE
103
A
TYR
104
n
89
TYR
104
A
ARG
105
n
90
ARG
105
A
ASN
106
n
91
ASN
106
A
LEU
107
n
92
LEU
107
A
VAL
108
n
93
VAL
108
A
VAL
109
n
94
VAL
109
A
VAL
110
n
95
VAL
110
A
ASN
111
n
96
ASN
111
A
GLN
112
n
97
GLN
112
A
n
98
113
A
n
99
114
A
n
100
115
A
n
101
116
A
n
102
117
A
n
103
118
A
n
104
119
A
n
105
120
A
n
106
121
A
n
107
122
A
n
108
123
A
n
109
124
A
n
110
125
A
LEU
17
n
1
LEU
17
P
THR
18
n
2
THR
18
P
PHE
19
n
3
PHE
19
P
GLU
20
n
4
GLU
20
P
HIS
21
n
5
HIS
21
P
TRP
22
n
6
TRP
22
P
TRP
23
n
7
TRP
23
P
ALA
24
n
8
ALA
24
P
GLN
25
n
9
GLN
25
P
LEU
26
n
10
LEU
26
P
THR
27
n
11
THR
27
P
SER
28
n
12
SER
28
P
author_and_software_defined_assembly
PISA
2
dimeric
1360
-11
6200
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
48
A
O
TYR
33
A
N
VAL
28
A
N
VAL
13
A
N
LEU
27
A
N
LEU
12
A
O
VAL
110
A
O
VAL
95
A
N
VAL
75
A
N
VAL
60
A
O
PHE
91
A
O
PHE
76
1
A
GLN
113
A
GLN
98
1
Y
1
A
GLU
114
A
GLU
99
1
Y
1
A
SER
115
A
SER
100
1
Y
1
A
SER
116
A
SER
101
1
Y
1
A
ASP
117
A
ASP
102
1
Y
1
A
SER
118
A
SER
103
1
Y
1
A
GLY
119
A
GLY
104
1
Y
1
A
THR
120
A
THR
105
1
Y
1
A
SER
121
A
SER
106
1
Y
1
A
VAL
122
A
VAL
107
1
Y
1
A
SER
123
A
SER
108
1
Y
1
A
GLU
124
A
GLU
109
1
Y
1
A
ASN
125
A
ASN
110
1
Y
0.228
0.194
0.194
0.194
2.1
46
528
6950
6950
95.9
random
1
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
pdb entry 1T4F
Engh & Huber
0.28
0.23
5.00
0.23
0.21
2.1
46
116
1017
0
0
901
0.008
1.2
0.278
0.032
0.239
2.23
77
1000
91.6
26.6
2.1
50
3JZR
7261
7261
0
0
0.12
1
30.1
4.4
99.8
0.32
2.1
2.18
8.4
714
4.4
100
data collection
StructureStudio
refinement
CNS
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
Human MDM2 liganded with a 12mer peptide inhibitor (pDI6W)
1
N
N
2
N
N
3
N
N
3
N
N
A
PRO
20
A
PRO
5
HELX_P
A
GLU
25
A
GLU
10
1
1
6
A
LYS
31
A
LYS
16
HELX_P
A
VAL
41
A
VAL
26
1
2
11
A
MET
50
A
MET
35
HELX_P
A
ARG
65
A
ARG
50
1
3
16
A
ASP
80
A
ASP
65
HELX_P
A
GLY
87
A
GLY
72
1
4
8
A
GLU
95
A
GLU
80
HELX_P
A
ARG
105
A
ARG
90
1
5
11
P
THR
18
B
THR
2
HELX_P
P
GLN
25
B
GLN
9
1
6
8
LIGASE
P53-BINDING PROTEIN MDM2, ONCOPROTEIN MDM2, DOUBLE MINUTE 2 PROTEIN, HDM2, Alternative splicing, Cytoplasm, Host-virus interaction, Ligase, Metal-binding, Nucleus, Phosphoprotein, Proto-oncogene, Ubl conjugation, Ubl conjugation pathway, Zinc, Zinc-finger
MDM2_HUMAN
UNP
1
17
Q00987
SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH
RKIYTMIYRNLVVVNQQESSDSGTSVSEN
3JZR
PDB
2
3JZR
17
125
3JZR
17
125
Q00987
A
1
2
110
17
28
3JZR
17
28
3JZR
P
2
1
12
1
expression tag
GLY
16
3JZR
A
Q00987
UNP
1
3
2
anti-parallel
anti-parallel
anti-parallel
A
TYR
48
A
TYR
33
A
THR
49
A
THR
34
A
LEU
27
A
LEU
12
A
PRO
30
A
PRO
15
A
LEU
107
A
LEU
92
A
ASN
111
A
ASN
96
A
ILE
74
A
ILE
59
A
TYR
76
A
TYR
61
A
SER
90
A
SER
75
A
SER
92
A
SER
77
23
I 2 2 2