0.009269 0.000000 0.000087 0.000000 0.018957 0.000000 0.000000 0.000000 0.028218 0.00000 0.00000 0.00000 He, Y.-X. Kang, Y. Zhang, W.J. Yu, J. Ma, G. Zhou, C.-Z. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.54 90.00 107.890 52.750 35.440 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N S N 305 N O N 306 N O N 307 N O N 308 N O N 309 N N N 310 S C N 311 N C N 312 N O N 313 R C N 314 N O N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N N Y 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C N 364 N O N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C N 382 N C N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N sing N 328 N sing Y 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing To be Published 0353 Crystal structure of the E95K mutant of the Indian Hedgehog N-terminal signalling domain 10.2210/pdb3k7h/pdb pdb_00003k7h 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2006-07-10 MAR scanner 345 mm plate SINGLE WAVELENGTH M x-ray 1 1.54178 1.0 1.54178 ROTATING ANODE RIGAKU MICROMAX-007 HF 21115.699 Indian hedgehog protein Indian hedgehog protein N-product E95K 1 man polymer 65.409 ZINC ION 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 182 nat water IHH, HHG-2 no no MRGSHHHHHHGSCGPGRVVGSRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEK NTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGF DWVYYESKAHVHCSVKSEHSAAAKTGG MRGSHHHHHHGSCGPGRVVGSRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEK NTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGF DWVYYESKAHVHCSVKSEHSAAAKTGG B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample IHH 9606 Homo sapiens 562 Escherichia coli Rosseta plasmid pET28a 1 2.39 48.49 VAPOR DIFFUSION, HANGING DROP 6.5 0.1M sodium cacodylate, pH 6.5, 30% PEG 8000, 0.2M (NH4)2SO4, VAPOR DIFFUSION, HANGING DROP, temperature 289K 289 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2011-01-26 1 1 2011-07-13 1 2 2023-11-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id the Indian Hedgehog N-terminal signalling domain, wild type the E131K mutant of the Indian Hedgehog N-terminal signalling domain the D100E mutant of the Indian Hedgehog N-terminal signalling domain RCSB Y PDBJ 2009-10-13 REL REL ZN ZINC ION SO4 SULFATE ION HOH water 1VHH PDB ENTRY 1VHH PDB experimental model ZN 1001 2 ZN ZN 1001 B SO4 1 3 SO4 SO4 1 B HOH 2 4 HOH HOH 2 B HOH 3 4 HOH HOH 3 B HOH 4 4 HOH HOH 4 B HOH 5 4 HOH HOH 5 B HOH 6 4 HOH HOH 6 B HOH 7 4 HOH HOH 7 B HOH 8 4 HOH HOH 8 B HOH 9 4 HOH HOH 9 B HOH 10 4 HOH HOH 10 B HOH 11 4 HOH HOH 11 B HOH 12 4 HOH HOH 12 B HOH 13 4 HOH HOH 13 B HOH 14 4 HOH HOH 14 B HOH 15 4 HOH HOH 15 B HOH 1 4 HOH HOH 203 B HOH 16 4 HOH HOH 204 B HOH 17 4 HOH HOH 205 B HOH 18 4 HOH HOH 206 B HOH 19 4 HOH HOH 207 B HOH 20 4 HOH HOH 208 B HOH 21 4 HOH HOH 209 B HOH 22 4 HOH HOH 210 B HOH 23 4 HOH HOH 211 B HOH 24 4 HOH HOH 212 B HOH 25 4 HOH HOH 213 B HOH 26 4 HOH HOH 214 B HOH 27 4 HOH HOH 215 B HOH 28 4 HOH HOH 216 B HOH 29 4 HOH HOH 217 B HOH 30 4 HOH HOH 218 B HOH 31 4 HOH HOH 219 B HOH 32 4 HOH HOH 220 B HOH 33 4 HOH HOH 221 B HOH 34 4 HOH HOH 222 B HOH 35 4 HOH HOH 223 B HOH 36 4 HOH HOH 224 B HOH 37 4 HOH HOH 225 B HOH 38 4 HOH HOH 226 B HOH 39 4 HOH HOH 227 B HOH 40 4 HOH HOH 228 B HOH 41 4 HOH HOH 229 B HOH 42 4 HOH HOH 230 B HOH 43 4 HOH HOH 231 B HOH 44 4 HOH HOH 232 B HOH 45 4 HOH HOH 233 B HOH 46 4 HOH HOH 234 B HOH 47 4 HOH HOH 235 B HOH 49 4 HOH HOH 236 B HOH 50 4 HOH HOH 237 B HOH 51 4 HOH HOH 238 B HOH 52 4 HOH HOH 239 B HOH 53 4 HOH HOH 240 B HOH 54 4 HOH HOH 241 B HOH 55 4 HOH HOH 242 B HOH 56 4 HOH HOH 243 B HOH 57 4 HOH HOH 244 B HOH 58 4 HOH HOH 245 B HOH 59 4 HOH HOH 246 B HOH 60 4 HOH HOH 247 B HOH 61 4 HOH HOH 248 B HOH 62 4 HOH HOH 249 B HOH 63 4 HOH HOH 250 B HOH 64 4 HOH HOH 251 B HOH 65 4 HOH HOH 252 B HOH 66 4 HOH HOH 253 B HOH 67 4 HOH HOH 254 B HOH 68 4 HOH HOH 255 B HOH 69 4 HOH HOH 256 B HOH 70 4 HOH HOH 257 B HOH 71 4 HOH HOH 258 B HOH 72 4 HOH HOH 259 B HOH 73 4 HOH HOH 260 B HOH 74 4 HOH HOH 261 B HOH 75 4 HOH HOH 262 B HOH 76 4 HOH HOH 263 B HOH 77 4 HOH HOH 264 B HOH 78 4 HOH HOH 265 B HOH 79 4 HOH HOH 266 B HOH 80 4 HOH HOH 267 B HOH 81 4 HOH HOH 268 B HOH 82 4 HOH HOH 269 B HOH 83 4 HOH HOH 270 B HOH 84 4 HOH HOH 271 B HOH 85 4 HOH HOH 272 B HOH 86 4 HOH HOH 273 B HOH 87 4 HOH HOH 274 B HOH 88 4 HOH HOH 275 B HOH 89 4 HOH HOH 276 B HOH 90 4 HOH HOH 277 B HOH 91 4 HOH HOH 278 B HOH 92 4 HOH HOH 279 B HOH 93 4 HOH HOH 280 B HOH 94 4 HOH HOH 281 B HOH 95 4 HOH HOH 282 B HOH 96 4 HOH HOH 283 B HOH 97 4 HOH HOH 284 B HOH 98 4 HOH HOH 285 B HOH 99 4 HOH HOH 286 B HOH 100 4 HOH HOH 287 B HOH 102 4 HOH HOH 288 B HOH 103 4 HOH HOH 289 B HOH 104 4 HOH HOH 290 B HOH 105 4 HOH HOH 291 B HOH 106 4 HOH HOH 292 B HOH 107 4 HOH HOH 293 B HOH 108 4 HOH HOH 294 B HOH 109 4 HOH HOH 295 B HOH 110 4 HOH HOH 296 B HOH 111 4 HOH HOH 297 B HOH 112 4 HOH HOH 298 B HOH 113 4 HOH HOH 299 B HOH 114 4 HOH HOH 300 B HOH 115 4 HOH HOH 301 B HOH 116 4 HOH HOH 302 B HOH 117 4 HOH HOH 303 B HOH 118 4 HOH HOH 304 B HOH 119 4 HOH HOH 305 B HOH 120 4 HOH HOH 306 B HOH 121 4 HOH HOH 307 B HOH 122 4 HOH HOH 308 B HOH 123 4 HOH HOH 309 B HOH 124 4 HOH HOH 310 B HOH 125 4 HOH HOH 311 B HOH 126 4 HOH HOH 312 B HOH 127 4 HOH HOH 313 B HOH 128 4 HOH HOH 314 B HOH 129 4 HOH HOH 315 B HOH 130 4 HOH HOH 316 B HOH 131 4 HOH HOH 317 B HOH 132 4 HOH HOH 318 B HOH 133 4 HOH HOH 319 B HOH 134 4 HOH HOH 320 B HOH 135 4 HOH HOH 321 B HOH 136 4 HOH HOH 322 B HOH 137 4 HOH HOH 323 B HOH 138 4 HOH HOH 324 B HOH 139 4 HOH HOH 325 B HOH 140 4 HOH HOH 326 B HOH 141 4 HOH HOH 327 B HOH 142 4 HOH HOH 328 B HOH 143 4 HOH HOH 329 B HOH 144 4 HOH HOH 330 B HOH 145 4 HOH HOH 331 B HOH 146 4 HOH HOH 332 B HOH 147 4 HOH HOH 333 B HOH 148 4 HOH HOH 334 B HOH 149 4 HOH HOH 335 B HOH 150 4 HOH HOH 336 B HOH 151 4 HOH HOH 337 B HOH 152 4 HOH HOH 338 B HOH 153 4 HOH HOH 339 B HOH 154 4 HOH HOH 340 B HOH 155 4 HOH HOH 341 B HOH 156 4 HOH HOH 342 B HOH 157 4 HOH HOH 343 B HOH 158 4 HOH HOH 344 B HOH 159 4 HOH HOH 345 B HOH 160 4 HOH HOH 346 B HOH 161 4 HOH HOH 347 B HOH 163 4 HOH HOH 348 B HOH 164 4 HOH HOH 349 B HOH 165 4 HOH HOH 350 B HOH 166 4 HOH HOH 351 B HOH 167 4 HOH HOH 352 B HOH 168 4 HOH HOH 353 B HOH 169 4 HOH HOH 354 B HOH 170 4 HOH HOH 355 B HOH 171 4 HOH HOH 356 B HOH 172 4 HOH HOH 357 B HOH 173 4 HOH HOH 358 B HOH 174 4 HOH HOH 359 B HOH 175 4 HOH HOH 360 B HOH 176 4 HOH HOH 361 B HOH 177 4 HOH HOH 362 B HOH 178 4 HOH HOH 363 B HOH 179 4 HOH HOH 364 B HOH 180 4 HOH HOH 365 B HOH 181 4 HOH HOH 366 B HOH 182 4 HOH HOH 367 B HOH 184 4 HOH HOH 368 B HOH 185 4 HOH HOH 369 B HOH 186 4 HOH HOH 370 B n 1 16 B n 2 17 B n 3 18 B n 4 19 B n 5 20 B n 6 21 B n 7 22 B n 8 23 B n 9 24 B n 10 25 B n 11 26 B n 12 27 B n 13 28 B n 14 29 B n 15 30 B n 16 31 B n 17 32 B n 18 33 B n 19 34 B n 20 35 B n 21 36 B n 22 37 B n 23 38 B n 24 39 B n 25 40 B PRO 41 n 26 PRO 41 B ARG 42 n 27 ARG 42 B LYS 43 n 28 LYS 43 B LEU 44 n 29 LEU 44 B VAL 45 n 30 VAL 45 B PRO 46 n 31 PRO 46 B LEU 47 n 32 LEU 47 B ALA 48 n 33 ALA 48 B TYR 49 n 34 TYR 49 B LYS 50 n 35 LYS 50 B GLN 51 n 36 GLN 51 B PHE 52 n 37 PHE 52 B SER 53 n 38 SER 53 B PRO 54 n 39 PRO 54 B ASN 55 n 40 ASN 55 B VAL 56 n 41 VAL 56 B PRO 57 n 42 PRO 57 B GLU 58 n 43 GLU 58 B LYS 59 n 44 LYS 59 B THR 60 n 45 THR 60 B LEU 61 n 46 LEU 61 B GLY 62 n 47 GLY 62 B ALA 63 n 48 ALA 63 B SER 64 n 49 SER 64 B GLY 65 n 50 GLY 65 B ARG 66 n 51 ARG 66 B TYR 67 n 52 TYR 67 B GLU 68 n 53 GLU 68 B GLY 69 n 54 GLY 69 B LYS 70 n 55 LYS 70 B ILE 71 n 56 ILE 71 B ALA 72 n 57 ALA 72 B ARG 73 n 58 ARG 73 B SER 74 n 59 SER 74 B SER 75 n 60 SER 75 B GLU 76 n 61 GLU 76 B ARG 77 n 62 ARG 77 B PHE 78 n 63 PHE 78 B LYS 79 n 64 LYS 79 B GLU 80 n 65 GLU 80 B LEU 81 n 66 LEU 81 B THR 82 n 67 THR 82 B PRO 83 n 68 PRO 83 B ASN 84 n 69 ASN 84 B TYR 85 n 70 TYR 85 B ASN 86 n 71 ASN 86 B PRO 87 n 72 PRO 87 B ASP 88 n 73 ASP 88 B ILE 89 n 74 ILE 89 B ILE 90 n 75 ILE 90 B PHE 91 n 76 PHE 91 B LYS 92 n 77 LYS 92 B ASP 93 n 78 ASP 93 B GLU 94 n 79 GLU 94 B LYS 95 n 80 LYS 95 B ASN 96 n 81 ASN 96 B THR 97 n 82 THR 97 B GLY 98 n 83 GLY 98 B ALA 99 n 84 ALA 99 B ASP 100 n 85 ASP 100 B ARG 101 n 86 ARG 101 B LEU 102 n 87 LEU 102 B MET 103 n 88 MET 103 B THR 104 n 89 THR 104 B GLN 105 n 90 GLN 105 B ARG 106 n 91 ARG 106 B CYS 107 n 92 CYS 107 B LYS 108 n 93 LYS 108 B ASP 109 n 94 ASP 109 B ARG 110 n 95 ARG 110 B LEU 111 n 96 LEU 111 B ASN 112 n 97 ASN 112 B SER 113 n 98 SER 113 B LEU 114 n 99 LEU 114 B ALA 115 n 100 ALA 115 B ILE 116 n 101 ILE 116 B SER 117 n 102 SER 117 B VAL 118 n 103 VAL 118 B MET 119 n 104 MET 119 B ASN 120 n 105 ASN 120 B GLN 121 n 106 GLN 121 B TRP 122 n 107 TRP 122 B PRO 123 n 108 PRO 123 B GLY 124 n 109 GLY 124 B VAL 125 n 110 VAL 125 B LYS 126 n 111 LYS 126 B LEU 127 n 112 LEU 127 B ARG 128 n 113 ARG 128 B VAL 129 n 114 VAL 129 B THR 130 n 115 THR 130 B GLU 131 n 116 GLU 131 B GLY 132 n 117 GLY 132 B TRP 133 n 118 TRP 133 B ASP 134 n 119 ASP 134 B GLU 135 n 120 GLU 135 B ASP 136 n 121 ASP 136 B GLY 137 n 122 GLY 137 B HIS 138 n 123 HIS 138 B HIS 139 n 124 HIS 139 B SER 140 n 125 SER 140 B GLU 141 n 126 GLU 141 B GLU 142 n 127 GLU 142 B SER 143 n 128 SER 143 B LEU 144 n 129 LEU 144 B HIS 145 n 130 HIS 145 B TYR 146 n 131 TYR 146 B GLU 147 n 132 GLU 147 B GLY 148 n 133 GLY 148 B ARG 149 n 134 ARG 149 B ALA 150 n 135 ALA 150 B VAL 151 n 136 VAL 151 B ASP 152 n 137 ASP 152 B ILE 153 n 138 ILE 153 B THR 154 n 139 THR 154 B THR 155 n 140 THR 155 B SER 156 n 141 SER 156 B ASP 157 n 142 ASP 157 B ARG 158 n 143 ARG 158 B ASP 159 n 144 ASP 159 B ARG 160 n 145 ARG 160 B ASN 161 n 146 ASN 161 B LYS 162 n 147 LYS 162 B TYR 163 n 148 TYR 163 B GLY 164 n 149 GLY 164 B LEU 165 n 150 LEU 165 B LEU 166 n 151 LEU 166 B ALA 167 n 152 ALA 167 B ARG 168 n 153 ARG 168 B LEU 169 n 154 LEU 169 B ALA 170 n 155 ALA 170 B VAL 171 n 156 VAL 171 B GLU 172 n 157 GLU 172 B ALA 173 n 158 ALA 173 B GLY 174 n 159 GLY 174 B PHE 175 n 160 PHE 175 B ASP 176 n 161 ASP 176 B TRP 177 n 162 TRP 177 B VAL 178 n 163 VAL 178 B TYR 179 n 164 TYR 179 B TYR 180 n 165 TYR 180 B GLU 181 n 166 GLU 181 B SER 182 n 167 SER 182 B LYS 183 n 168 LYS 183 B ALA 184 n 169 ALA 184 B HIS 185 n 170 HIS 185 B VAL 186 n 171 VAL 186 B HIS 187 n 172 HIS 187 B CYS 188 n 173 CYS 188 B SER 189 n 174 SER 189 B VAL 190 n 175 VAL 190 B LYS 191 n 176 LYS 191 B SER 192 n 177 SER 192 B GLU 193 n 178 GLU 193 B HIS 194 n 179 HIS 194 B SER 195 n 180 SER 195 B ALA 196 n 181 ALA 196 B ALA 197 n 182 ALA 197 B n 183 198 B n 184 199 B n 185 200 B n 186 201 B n 187 202 B author_and_software_defined_assembly PISA 1 monomeric B HIS 145 A NE2 HIS 130 1_555 B ZN 1001 B ZN ZN 1_555 B ASP 152 A OD1 ASP 137 1_555 106.4 B HIS 145 A NE2 HIS 130 1_555 B ZN 1001 B ZN ZN 1_555 B HIS 187 A ND1 HIS 172 1_555 105.4 B ASP 152 A OD1 ASP 137 1_555 B ZN 1001 B ZN ZN 1_555 B HIS 187 A ND1 HIS 172 1_555 108.1 B HIS 145 A NE2 HIS 130 1_555 B ZN 1001 B ZN ZN 1_555 B HOH 368 D O HOH 1_555 114.2 B ASP 152 A OD1 ASP 137 1_555 B ZN 1001 B ZN ZN 1_555 B HOH 368 D O HOH 1_555 115.0 B HIS 187 A ND1 HIS 172 1_555 B ZN 1001 B ZN ZN 1_555 B HOH 368 D O HOH 1_555 107.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 B N SER 53 A N SER 38 B O VAL 178 A O VAL 163 B N TYR 179 A N TYR 164 B O HIS 187 A O HIS 172 B O CYS 188 A O CYS 173 B N VAL 151 A N VAL 136 B O ASP 152 A O ASP 137 B N GLU 131 A N GLU 116 B O VAL 129 A O VAL 114 B N ILE 90 A N ILE 75 B N THR 82 A N THR 67 B O MET 103 A O MET 88 1 B HOH 207 D HOH 1 B MET 16 A MET 1 1 Y 1 B ARG 17 A ARG 2 1 Y 1 B GLY 18 A GLY 3 1 Y 1 B SER 19 A SER 4 1 Y 1 B HIS 20 A HIS 5 1 Y 1 B HIS 21 A HIS 6 1 Y 1 B HIS 22 A HIS 7 1 Y 1 B HIS 23 A HIS 8 1 Y 1 B HIS 24 A HIS 9 1 Y 1 B HIS 25 A HIS 10 1 Y 1 B GLY 26 A GLY 11 1 Y 1 B SER 27 A SER 12 1 Y 1 B CYS 28 A CYS 13 1 Y 1 B GLY 29 A GLY 14 1 Y 1 B PRO 30 A PRO 15 1 Y 1 B GLY 31 A GLY 16 1 Y 1 B ARG 32 A ARG 17 1 Y 1 B VAL 33 A VAL 18 1 Y 1 B VAL 34 A VAL 19 1 Y 1 B GLY 35 A GLY 20 1 Y 1 B SER 36 A SER 21 1 Y 1 B ARG 37 A ARG 22 1 Y 1 B ARG 38 A ARG 23 1 Y 1 B ARG 39 A ARG 24 1 Y 1 B PRO 40 A PRO 25 1 Y 1 B ALA 198 A ALA 183 1 Y 1 B LYS 199 A LYS 184 1 Y 1 B THR 200 A THR 185 1 Y 1 B GLY 201 A GLY 186 1 Y 1 B GLY 202 A GLY 187 1 Y 1 B LYS 50 77.84 -4.52 1 B LYS 59 -95.67 54.83 1 B ALA 63 -112.08 -117.73 57.33 20.307 12.48 -2.684 -0.000 0.586 -1.778 -0.000 -3.447 0.1978 0.1898 0.1902 1.500 26.971 1603 30188 31791 5.04 99.47 1.00 0.41 0.897 0.15 RANDOM 1 THROUGHOUT 1.37 MOLECULAR REPLACEMENT 17.780 0.90 1.11 PDB ENTRY 1VHH ML FLAT BULK SOLVENT MODEL 42.011 0.433 1.500 26.971 182 1448 6 0 1260 0.005 1294 0.995 1747 17.208 480 0.077 181 0.003 228 0.2807 0.2748 1.5484 157 2699 98.00 0.2578 0.2469 1.6038 116 2703 99.00 0.2357 0.2041 1.6680 141 2733 99.00 0.2009 0.1737 1.7439 113 2745 99.00 0.1992 0.1648 1.8358 151 2721 100.00 0.2050 0.1530 1.9508 153 2757 100.00 0.1711 0.1565 2.1013 152 2745 100.00 0.1816 0.1580 2.3127 144 2759 100.00 0.1990 0.1724 2.6471 164 2744 100.00 0.1720 0.1702 3.3341 160 2769 100.00 0.1601 0.1690 26.9756 152 2813 100.00 17.41 1.50 26.971 3K7H 31798 0.048 1 14.7 3.5 99.5 0.656 1.50 1.58 2.0 4575 3.3 98.4 data collection MAR345dtb phasing MOLREP refinement PHENIX (phenix.refine) data reduction MOSFLM data scaling SCALA Crystal structure of the E95K mutant of the Indian Hedgehog N-terminal signalling domain 1 N N 2 N N 3 N N 4 N N B SER 75 A SER 60 HELX_P B LEU 81 A LEU 66 5 1 7 B GLY 98 A GLY 83 HELX_P B ASP 100 A ASP 85 5 2 3 B THR 104 A THR 89 HELX_P B TRP 122 A TRP 107 1 3 19 B SER 143 A SER 128 HELX_P B GLY 148 A GLY 133 5 4 6 B ASP 159 A ASP 144 HELX_P B ASN 161 A ASN 146 5 5 3 B LYS 162 A LYS 147 HELX_P B ALA 173 A ALA 158 1 6 12 metalc 2.039 B HIS 145 A NE2 HIS 130 1_555 B ZN 1001 B ZN ZN 1_555 metalc 1.975 B ASP 152 A OD1 ASP 137 1_555 B ZN 1001 B ZN ZN 1_555 metalc 2.089 B HIS 187 A ND1 HIS 172 1_555 B ZN 1001 B ZN ZN 1_555 metalc 2.049 B HOH 368 D O HOH 1_555 B ZN 1001 B ZN ZN 1_555 SIGNALING PROTEIN alpha+beta sandwich, Autocatalytic cleavage, Cell membrane, Developmental protein, Disease mutation, Glycoprotein, Hydrolase, Lipoprotein, Membrane, Palmitate, Protease, Secreted, SIGNALING PROTEIN B SER 53 A SER 38 1 B PRO 54 A PRO 39 -3.48 IHH_HUMAN UNP 1 28 Q14623 CGPGRVVGSRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEENTGADRLMTQRC KDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVH CSVKSEHSAAAKTGG 28 202 3K7H 28 202 Q14623 B 1 13 187 1 initiating methionine MET 16 3K7H B Q14623 UNP 1 1 expression tag ARG 17 3K7H B Q14623 UNP 2 1 expression tag GLY 18 3K7H B Q14623 UNP 3 1 expression tag SER 19 3K7H B Q14623 UNP 4 1 expression tag HIS 20 3K7H B Q14623 UNP 5 1 expression tag HIS 21 3K7H B Q14623 UNP 6 1 expression tag HIS 22 3K7H B Q14623 UNP 7 1 expression tag HIS 23 3K7H B Q14623 UNP 8 1 expression tag HIS 24 3K7H B Q14623 UNP 9 1 expression tag HIS 25 3K7H B Q14623 UNP 10 1 expression tag GLY 26 3K7H B Q14623 UNP 11 1 expression tag SER 27 3K7H B Q14623 UNP 12 1 GLU engineered mutation LYS 95 3K7H B Q14623 UNP 95 80 6 2 anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel B PHE 52 A PHE 37 B SER 53 A SER 38 B TRP 177 A TRP 162 B SER 182 A SER 167 B HIS 185 A HIS 170 B SER 189 A SER 174 B ALA 150 A ALA 135 B THR 155 A THR 140 B LEU 127 A LEU 112 B GLU 131 A GLU 116 B ILE 89 A ILE 74 B PHE 91 A PHE 76 B THR 82 A THR 67 B PRO 83 A PRO 68 B LEU 102 A LEU 87 B MET 103 A MET 88 BINDING SITE FOR RESIDUE ZN B 1001 B ZN 1001 Software 5 BINDING SITE FOR RESIDUE SO4 B 1 B SO4 1 Software 7 B HIS 145 A HIS 130 5 1_555 B ASP 152 A ASP 137 5 1_555 B HIS 187 A HIS 172 5 1_555 B ALA 197 A ALA 182 5 4_455 B HOH 368 D HOH 5 1_555 B HOH 13 D HOH 7 1_555 B LYS 92 A LYS 77 7 1_555 B ARG 128 A ARG 113 7 1_555 B THR 130 A THR 115 7 1_555 B ARG 158 A ARG 143 7 1_555 B HOH 205 D HOH 7 1_555 B HOH 234 D HOH 7 1_555 5 C 1 2 1