0.006503
0.003754
0.000000
0.000000
0.007509
0.000000
0.000000
0.000000
0.005939
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.000
90.000
120.000
153.782
153.782
168.378
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C3 H5 N2 1
69.085
IMIDAZOLE
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H14 O2
118.174
(4R)-2-METHYLPENTANE-2,4-DIOL
non-polymer
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
To be published
0353
Crystal structure of putative peptidase (NP_348812.1) from CLOSTRIDIUM ACETOBUTYLICUM at 2.37 A resolution
10.2210/pdb3k9t/pdb
pdb_00003k9t
100
1
Flat collimating mirror, toroid focusing mirror
CCD
2009-07-31
MARMOSAIC 325 mm CCD
Double crystal monochromator
MAD
M
x-ray
1
0.91837
1.0
0.97911
1.0
BL9-2
SSRL
0.91837,0.97911
SYNCHROTRON
SSRL BEAMLINE BL9-2
50586.395
putative peptidase
P309S
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
35.453
CHLORIDE ION
2
syn
non-polymer
69.085
IMIDAZOLE
1
syn
non-polymer
118.174
(4R)-2-METHYLPENTANE-2,4-DIOL
4
syn
non-polymer
18.015
water
221
nat
water
Protein containing aminopeptidase domain
no
yes
G(MSE)EEINKYIQNSSETGGEIYNLIEELFPICRSITGNGVRKT(MSE)DIIRKHIPLEIHEVKSGTKVFDWTVPKEWN
IKDAYVRNSKGEKVIDFKENNLHV(MSE)SYSVPVHKT(MSE)TLDELKPYLHTIPGNKDRIPYLTSYYKENWGFSLTQN
KFDELCDDDYEVVIDSSLEDGSLTYGEYYIRGELEEEILLTTYTCHPS(MSE)CNDNLSGVALITFIAKALSKLKTKYSY
RFLFAPETIGSITWLSRNEDKLKNIK(MSE)GLVATCVGDAGIKNYKRTKFGDAEIDKIVEKVL(MSE)HCGSEYYVADF
FPWGSDERQFSSPGINLSVGSL(MSE)RSCYGFDGYHTSADNLCY(MSE)NKDGLADSYKTYLEVIYTIENNRTYLNLNP
KCEPQLGKRGIYR(MSE)IGGGSDYPFDEFA(MSE)FWVLN(MSE)SDGKNSLLDIAYKSG(MSE)EFRRIKYAADALYR
VELLKLV
GMEEINKYIQNSSETGGEIYNLIEELFPICRSITGNGVRKTMDIIRKHIPLEIHEVKSGTKVFDWTVPKEWNIKDAYVRN
SKGEKVIDFKENNLHVMSYSVPVHKTMTLDELKPYLHTIPGNKDRIPYLTSYYKENWGFSLTQNKFDELCDDDYEVVIDS
SLEDGSLTYGEYYIRGELEEEILLTTYTCHPSMCNDNLSGVALITFIAKALSKLKTKYSYRFLFAPETIGSITWLSRNED
KLKNIKMGLVATCVGDAGIKNYKRTKFGDAEIDKIVEKVLMHCGSEYYVADFFPWGSDERQFSSPGINLSVGSLMRSCYG
FDGYHTSADNLCYMNKDGLADSYKTYLEVIYTIENNRTYLNLNPKCEPQLGKRGIYRMIGGGSDYPFDEFAMFWVLNMSD
GKNSLLDIAYKSGMEFRRIKYAADALYRVELLKLV
A
393080
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
CA_C2195
1488
Clostridium acetobutylicum
562
Escherichia Coli
HK100
Plasmid
SpeedET
1
3.79
67.52
VAPOR DIFFUSION, SITTING DROP
8.0
0.2000M MgCl2, 40.0000% MPD, 0.1M Imidazole pH 8.0, Additive: 0.006M Zinc Chloride, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
pdbx_struct_assembly_auth_evidence
software
software
struct_conn
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Advisory
Version format compliance
Author supporting evidence
Refinement description
Data collection
Derived calculations
Refinement description
Database references
Derived calculations
1
0
2009-11-10
1
1
2011-07-13
1
2
2017-10-25
1
3
2019-07-17
1
4
2023-02-01
_software.classification
_software.name
_software.classification
_software.contact_author
_software.contact_author_email
_software.language
_software.location
_software.name
_software.type
_software.version
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2009-10-16
REL
REL
ZN
ZINC ION
CL
CHLORIDE ION
IMD
IMIDAZOLE
MRD
(4R)-2-METHYLPENTANE-2,4-DIOL
HOH
water
THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DNA SEQUENCING OF THE CLONED CONSTRUCT SHOWS A SERINE AT POSITION 309 INSTEAD OF A PROLINE. THE SERINE AT POSITION 309 IS SUPPORTED BY THE ELECTRON DENSITY.
ZN
1
2
ZN
ZN
435
A
CL
2
3
CL
CL
436
A
CL
3
3
CL
CL
437
A
IMD
4
4
IMD
IMD
438
A
MRD
5
5
MRD
MRD
439
A
MRD
6
5
MRD
MRD
440
A
MRD
7
5
MRD
MRD
441
A
MRD
8
5
MRD
MRD
442
A
HOH
9
6
HOH
HOH
443
A
HOH
10
6
HOH
HOH
444
A
HOH
11
6
HOH
HOH
445
A
HOH
12
6
HOH
HOH
446
A
HOH
13
6
HOH
HOH
447
A
HOH
14
6
HOH
HOH
448
A
HOH
15
6
HOH
HOH
449
A
HOH
16
6
HOH
HOH
450
A
HOH
17
6
HOH
HOH
451
A
HOH
18
6
HOH
HOH
452
A
HOH
19
6
HOH
HOH
453
A
HOH
20
6
HOH
HOH
454
A
HOH
21
6
HOH
HOH
455
A
HOH
22
6
HOH
HOH
456
A
HOH
23
6
HOH
HOH
457
A
HOH
24
6
HOH
HOH
458
A
HOH
25
6
HOH
HOH
459
A
HOH
26
6
HOH
HOH
460
A
HOH
27
6
HOH
HOH
461
A
HOH
28
6
HOH
HOH
462
A
HOH
29
6
HOH
HOH
463
A
HOH
30
6
HOH
HOH
464
A
HOH
31
6
HOH
HOH
465
A
HOH
32
6
HOH
HOH
466
A
HOH
33
6
HOH
HOH
467
A
HOH
34
6
HOH
HOH
468
A
HOH
35
6
HOH
HOH
469
A
HOH
36
6
HOH
HOH
470
A
HOH
37
6
HOH
HOH
471
A
HOH
38
6
HOH
HOH
472
A
HOH
39
6
HOH
HOH
473
A
HOH
40
6
HOH
HOH
474
A
HOH
41
6
HOH
HOH
475
A
HOH
42
6
HOH
HOH
476
A
HOH
43
6
HOH
HOH
477
A
HOH
44
6
HOH
HOH
478
A
HOH
45
6
HOH
HOH
479
A
HOH
46
6
HOH
HOH
480
A
HOH
47
6
HOH
HOH
481
A
HOH
48
6
HOH
HOH
482
A
HOH
49
6
HOH
HOH
483
A
HOH
50
6
HOH
HOH
484
A
HOH
51
6
HOH
HOH
485
A
HOH
52
6
HOH
HOH
486
A
HOH
53
6
HOH
HOH
487
A
HOH
54
6
HOH
HOH
488
A
HOH
55
6
HOH
HOH
489
A
HOH
56
6
HOH
HOH
490
A
HOH
57
6
HOH
HOH
491
A
HOH
58
6
HOH
HOH
492
A
HOH
59
6
HOH
HOH
493
A
HOH
60
6
HOH
HOH
494
A
HOH
61
6
HOH
HOH
495
A
HOH
62
6
HOH
HOH
496
A
HOH
63
6
HOH
HOH
497
A
HOH
64
6
HOH
HOH
498
A
HOH
65
6
HOH
HOH
499
A
HOH
66
6
HOH
HOH
500
A
HOH
67
6
HOH
HOH
501
A
HOH
68
6
HOH
HOH
502
A
HOH
69
6
HOH
HOH
503
A
HOH
70
6
HOH
HOH
504
A
HOH
71
6
HOH
HOH
505
A
HOH
72
6
HOH
HOH
506
A
HOH
73
6
HOH
HOH
507
A
HOH
74
6
HOH
HOH
508
A
HOH
75
6
HOH
HOH
509
A
HOH
76
6
HOH
HOH
510
A
HOH
77
6
HOH
HOH
511
A
HOH
78
6
HOH
HOH
512
A
HOH
79
6
HOH
HOH
513
A
HOH
80
6
HOH
HOH
514
A
HOH
81
6
HOH
HOH
515
A
HOH
82
6
HOH
HOH
516
A
HOH
83
6
HOH
HOH
517
A
HOH
84
6
HOH
HOH
518
A
HOH
85
6
HOH
HOH
519
A
HOH
86
6
HOH
HOH
520
A
HOH
87
6
HOH
HOH
521
A
HOH
88
6
HOH
HOH
522
A
HOH
89
6
HOH
HOH
523
A
HOH
90
6
HOH
HOH
524
A
HOH
91
6
HOH
HOH
525
A
HOH
92
6
HOH
HOH
526
A
HOH
93
6
HOH
HOH
527
A
HOH
94
6
HOH
HOH
528
A
HOH
95
6
HOH
HOH
529
A
HOH
96
6
HOH
HOH
530
A
HOH
97
6
HOH
HOH
531
A
HOH
98
6
HOH
HOH
532
A
HOH
99
6
HOH
HOH
533
A
HOH
100
6
HOH
HOH
534
A
HOH
101
6
HOH
HOH
535
A
HOH
102
6
HOH
HOH
536
A
HOH
103
6
HOH
HOH
537
A
HOH
104
6
HOH
HOH
538
A
HOH
105
6
HOH
HOH
539
A
HOH
106
6
HOH
HOH
540
A
HOH
107
6
HOH
HOH
541
A
HOH
108
6
HOH
HOH
542
A
HOH
109
6
HOH
HOH
543
A
HOH
110
6
HOH
HOH
544
A
HOH
111
6
HOH
HOH
545
A
HOH
112
6
HOH
HOH
546
A
HOH
113
6
HOH
HOH
547
A
HOH
114
6
HOH
HOH
548
A
HOH
115
6
HOH
HOH
549
A
HOH
116
6
HOH
HOH
550
A
HOH
117
6
HOH
HOH
551
A
HOH
118
6
HOH
HOH
552
A
HOH
119
6
HOH
HOH
553
A
HOH
120
6
HOH
HOH
554
A
HOH
121
6
HOH
HOH
555
A
HOH
122
6
HOH
HOH
556
A
HOH
123
6
HOH
HOH
557
A
HOH
124
6
HOH
HOH
558
A
HOH
125
6
HOH
HOH
559
A
HOH
126
6
HOH
HOH
560
A
HOH
127
6
HOH
HOH
561
A
HOH
128
6
HOH
HOH
562
A
HOH
129
6
HOH
HOH
563
A
HOH
130
6
HOH
HOH
564
A
HOH
131
6
HOH
HOH
565
A
HOH
132
6
HOH
HOH
566
A
HOH
133
6
HOH
HOH
567
A
HOH
134
6
HOH
HOH
568
A
HOH
135
6
HOH
HOH
569
A
HOH
136
6
HOH
HOH
570
A
HOH
137
6
HOH
HOH
571
A
HOH
138
6
HOH
HOH
572
A
HOH
139
6
HOH
HOH
573
A
HOH
140
6
HOH
HOH
574
A
HOH
141
6
HOH
HOH
575
A
HOH
142
6
HOH
HOH
576
A
HOH
143
6
HOH
HOH
577
A
HOH
144
6
HOH
HOH
578
A
HOH
145
6
HOH
HOH
579
A
HOH
146
6
HOH
HOH
580
A
HOH
147
6
HOH
HOH
581
A
HOH
148
6
HOH
HOH
582
A
HOH
149
6
HOH
HOH
583
A
HOH
150
6
HOH
HOH
584
A
HOH
151
6
HOH
HOH
585
A
HOH
152
6
HOH
HOH
586
A
HOH
153
6
HOH
HOH
587
A
HOH
154
6
HOH
HOH
588
A
HOH
155
6
HOH
HOH
589
A
HOH
156
6
HOH
HOH
590
A
HOH
157
6
HOH
HOH
591
A
HOH
158
6
HOH
HOH
592
A
HOH
159
6
HOH
HOH
593
A
HOH
160
6
HOH
HOH
594
A
HOH
161
6
HOH
HOH
595
A
HOH
162
6
HOH
HOH
596
A
HOH
163
6
HOH
HOH
597
A
HOH
164
6
HOH
HOH
598
A
HOH
165
6
HOH
HOH
599
A
HOH
166
6
HOH
HOH
600
A
HOH
167
6
HOH
HOH
601
A
HOH
168
6
HOH
HOH
602
A
HOH
169
6
HOH
HOH
603
A
HOH
170
6
HOH
HOH
604
A
HOH
171
6
HOH
HOH
605
A
HOH
172
6
HOH
HOH
606
A
HOH
173
6
HOH
HOH
607
A
HOH
174
6
HOH
HOH
608
A
HOH
175
6
HOH
HOH
609
A
HOH
176
6
HOH
HOH
610
A
HOH
177
6
HOH
HOH
611
A
HOH
178
6
HOH
HOH
612
A
HOH
179
6
HOH
HOH
613
A
HOH
180
6
HOH
HOH
614
A
HOH
181
6
HOH
HOH
615
A
HOH
182
6
HOH
HOH
616
A
HOH
183
6
HOH
HOH
617
A
HOH
184
6
HOH
HOH
618
A
HOH
185
6
HOH
HOH
619
A
HOH
186
6
HOH
HOH
620
A
HOH
187
6
HOH
HOH
621
A
HOH
188
6
HOH
HOH
622
A
HOH
189
6
HOH
HOH
623
A
HOH
190
6
HOH
HOH
624
A
HOH
191
6
HOH
HOH
625
A
HOH
192
6
HOH
HOH
626
A
HOH
193
6
HOH
HOH
627
A
HOH
194
6
HOH
HOH
628
A
HOH
195
6
HOH
HOH
629
A
HOH
196
6
HOH
HOH
630
A
HOH
197
6
HOH
HOH
631
A
HOH
198
6
HOH
HOH
632
A
HOH
199
6
HOH
HOH
633
A
HOH
200
6
HOH
HOH
634
A
HOH
201
6
HOH
HOH
635
A
HOH
202
6
HOH
HOH
636
A
HOH
203
6
HOH
HOH
637
A
HOH
204
6
HOH
HOH
638
A
HOH
205
6
HOH
HOH
639
A
HOH
206
6
HOH
HOH
640
A
HOH
207
6
HOH
HOH
641
A
HOH
208
6
HOH
HOH
642
A
HOH
209
6
HOH
HOH
643
A
HOH
210
6
HOH
HOH
644
A
HOH
211
6
HOH
HOH
645
A
HOH
212
6
HOH
HOH
646
A
HOH
213
6
HOH
HOH
647
A
HOH
214
6
HOH
HOH
648
A
HOH
215
6
HOH
HOH
649
A
HOH
216
6
HOH
HOH
650
A
HOH
217
6
HOH
HOH
651
A
HOH
218
6
HOH
HOH
652
A
HOH
219
6
HOH
HOH
653
A
HOH
220
6
HOH
HOH
654
A
HOH
221
6
HOH
HOH
655
A
HOH
222
6
HOH
HOH
656
A
HOH
223
6
HOH
HOH
657
A
HOH
224
6
HOH
HOH
658
A
HOH
225
6
HOH
HOH
659
A
HOH
226
6
HOH
HOH
660
A
HOH
227
6
HOH
HOH
661
A
HOH
228
6
HOH
HOH
662
A
HOH
229
6
HOH
HOH
663
A
GLY
0
n
1
GLY
0
A
MSE
1
n
2
MSE
1
A
GLU
2
n
3
GLU
2
A
GLU
3
n
4
GLU
3
A
ILE
4
n
5
ILE
4
A
ASN
5
n
6
ASN
5
A
LYS
6
n
7
LYS
6
A
TYR
7
n
8
TYR
7
A
ILE
8
n
9
ILE
8
A
GLN
9
n
10
GLN
9
A
ASN
10
n
11
ASN
10
A
SER
11
n
12
SER
11
A
SER
12
n
13
SER
12
A
GLU
13
n
14
GLU
13
A
THR
14
n
15
THR
14
A
GLY
15
n
16
GLY
15
A
GLY
16
n
17
GLY
16
A
GLU
17
n
18
GLU
17
A
ILE
18
n
19
ILE
18
A
TYR
19
n
20
TYR
19
A
ASN
20
n
21
ASN
20
A
LEU
21
n
22
LEU
21
A
ILE
22
n
23
ILE
22
A
GLU
23
n
24
GLU
23
A
GLU
24
n
25
GLU
24
A
LEU
25
n
26
LEU
25
A
PHE
26
n
27
PHE
26
A
PRO
27
n
28
PRO
27
A
ILE
28
n
29
ILE
28
A
CYS
29
n
30
CYS
29
A
ARG
30
n
31
ARG
30
A
SER
31
n
32
SER
31
A
ILE
32
n
33
ILE
32
A
THR
33
n
34
THR
33
A
GLY
34
n
35
GLY
34
A
ASN
35
n
36
ASN
35
A
GLY
36
n
37
GLY
36
A
VAL
37
n
38
VAL
37
A
ARG
38
n
39
ARG
38
A
LYS
39
n
40
LYS
39
A
THR
40
n
41
THR
40
A
MSE
41
n
42
MSE
41
A
ASP
42
n
43
ASP
42
A
ILE
43
n
44
ILE
43
A
ILE
44
n
45
ILE
44
A
ARG
45
n
46
ARG
45
A
LYS
46
n
47
LYS
46
A
HIS
47
n
48
HIS
47
A
ILE
48
n
49
ILE
48
A
PRO
49
n
50
PRO
49
A
LEU
50
n
51
LEU
50
A
GLU
51
n
52
GLU
51
A
ILE
52
n
53
ILE
52
A
HIS
53
n
54
HIS
53
A
GLU
54
n
55
GLU
54
A
VAL
55
n
56
VAL
55
A
LYS
56
n
57
LYS
56
A
SER
57
n
58
SER
57
A
GLY
58
n
59
GLY
58
A
THR
59
n
60
THR
59
A
LYS
60
n
61
LYS
60
A
VAL
61
n
62
VAL
61
A
PHE
62
n
63
PHE
62
A
ASP
63
n
64
ASP
63
A
TRP
64
n
65
TRP
64
A
THR
65
n
66
THR
65
A
VAL
66
n
67
VAL
66
A
PRO
67
n
68
PRO
67
A
LYS
68
n
69
LYS
68
A
GLU
69
n
70
GLU
69
A
TRP
70
n
71
TRP
70
A
ASN
71
n
72
ASN
71
A
ILE
72
n
73
ILE
72
A
LYS
73
n
74
LYS
73
A
ASP
74
n
75
ASP
74
A
ALA
75
n
76
ALA
75
A
TYR
76
n
77
TYR
76
A
VAL
77
n
78
VAL
77
A
ARG
78
n
79
ARG
78
A
ASN
79
n
80
ASN
79
A
SER
80
n
81
SER
80
A
LYS
81
n
82
LYS
81
A
GLY
82
n
83
GLY
82
A
GLU
83
n
84
GLU
83
A
LYS
84
n
85
LYS
84
A
VAL
85
n
86
VAL
85
A
ILE
86
n
87
ILE
86
A
ASP
87
n
88
ASP
87
A
PHE
88
n
89
PHE
88
A
LYS
89
n
90
LYS
89
A
GLU
90
n
91
GLU
90
A
ASN
91
n
92
ASN
91
A
ASN
92
n
93
ASN
92
A
LEU
93
n
94
LEU
93
A
HIS
94
n
95
HIS
94
A
VAL
95
n
96
VAL
95
A
MSE
96
n
97
MSE
96
A
SER
97
n
98
SER
97
A
TYR
98
n
99
TYR
98
A
SER
99
n
100
SER
99
A
VAL
100
n
101
VAL
100
A
PRO
101
n
102
PRO
101
A
VAL
102
n
103
VAL
102
A
HIS
103
n
104
HIS
103
A
LYS
104
n
105
LYS
104
A
THR
105
n
106
THR
105
A
MSE
106
n
107
MSE
106
A
THR
107
n
108
THR
107
A
LEU
108
n
109
LEU
108
A
ASP
109
n
110
ASP
109
A
GLU
110
n
111
GLU
110
A
LEU
111
n
112
LEU
111
A
LYS
112
n
113
LYS
112
A
PRO
113
n
114
PRO
113
A
TYR
114
n
115
TYR
114
A
LEU
115
n
116
LEU
115
A
HIS
116
n
117
HIS
116
A
THR
117
n
118
THR
117
A
ILE
118
n
119
ILE
118
A
PRO
119
n
120
PRO
119
A
GLY
120
n
121
GLY
120
A
ASN
121
n
122
ASN
121
A
LYS
122
n
123
LYS
122
A
ASP
123
n
124
ASP
123
A
ARG
124
n
125
ARG
124
A
ILE
125
n
126
ILE
125
A
PRO
126
n
127
PRO
126
A
TYR
127
n
128
TYR
127
A
LEU
128
n
129
LEU
128
A
THR
129
n
130
THR
129
A
SER
130
n
131
SER
130
A
TYR
131
n
132
TYR
131
A
TYR
132
n
133
TYR
132
A
LYS
133
n
134
LYS
133
A
GLU
134
n
135
GLU
134
A
ASN
135
n
136
ASN
135
A
TRP
136
n
137
TRP
136
A
GLY
137
n
138
GLY
137
A
PHE
138
n
139
PHE
138
A
SER
139
n
140
SER
139
A
LEU
140
n
141
LEU
140
A
THR
141
n
142
THR
141
A
GLN
142
n
143
GLN
142
A
ASN
143
n
144
ASN
143
A
LYS
144
n
145
LYS
144
A
PHE
145
n
146
PHE
145
A
ASP
146
n
147
ASP
146
A
GLU
147
n
148
GLU
147
A
LEU
148
n
149
LEU
148
A
CYS
149
n
150
CYS
149
A
ASP
150
n
151
ASP
150
A
ASP
151
n
152
ASP
151
A
ASP
152
n
153
ASP
152
A
TYR
153
n
154
TYR
153
A
GLU
154
n
155
GLU
154
A
VAL
155
n
156
VAL
155
A
VAL
156
n
157
VAL
156
A
ILE
157
n
158
ILE
157
A
ASP
158
n
159
ASP
158
A
SER
159
n
160
SER
159
A
SER
160
n
161
SER
160
A
LEU
161
n
162
LEU
161
A
GLU
162
n
163
GLU
162
A
ASP
163
n
164
ASP
163
A
GLY
164
n
165
GLY
164
A
SER
165
n
166
SER
165
A
LEU
166
n
167
LEU
166
A
THR
167
n
168
THR
167
A
TYR
168
n
169
TYR
168
A
GLY
169
n
170
GLY
169
A
GLU
170
n
171
GLU
170
A
TYR
171
n
172
TYR
171
A
TYR
172
n
173
TYR
172
A
ILE
173
n
174
ILE
173
A
ARG
174
n
175
ARG
174
A
GLY
175
n
176
GLY
175
A
GLU
176
n
177
GLU
176
A
LEU
177
n
178
LEU
177
A
GLU
178
n
179
GLU
178
A
GLU
179
n
180
GLU
179
A
GLU
180
n
181
GLU
180
A
ILE
181
n
182
ILE
181
A
LEU
182
n
183
LEU
182
A
LEU
183
n
184
LEU
183
A
THR
184
n
185
THR
184
A
THR
185
n
186
THR
185
A
TYR
186
n
187
TYR
186
A
THR
187
n
188
THR
187
A
CYS
188
n
189
CYS
188
A
HIS
189
n
190
HIS
189
A
PRO
190
n
191
PRO
190
A
SER
191
n
192
SER
191
A
MSE
192
n
193
MSE
192
A
CYS
193
n
194
CYS
193
A
ASN
194
n
195
ASN
194
A
ASP
195
n
196
ASP
195
A
ASN
196
n
197
ASN
196
A
LEU
197
n
198
LEU
197
A
SER
198
n
199
SER
198
A
GLY
199
n
200
GLY
199
A
VAL
200
n
201
VAL
200
A
ALA
201
n
202
ALA
201
A
LEU
202
n
203
LEU
202
A
ILE
203
n
204
ILE
203
A
THR
204
n
205
THR
204
A
PHE
205
n
206
PHE
205
A
ILE
206
n
207
ILE
206
A
ALA
207
n
208
ALA
207
A
LYS
208
n
209
LYS
208
A
ALA
209
n
210
ALA
209
A
LEU
210
n
211
LEU
210
A
SER
211
n
212
SER
211
A
LYS
212
n
213
LYS
212
A
LEU
213
n
214
LEU
213
A
LYS
214
n
215
LYS
214
A
THR
215
n
216
THR
215
A
LYS
216
n
217
LYS
216
A
TYR
217
n
218
TYR
217
A
SER
218
n
219
SER
218
A
TYR
219
n
220
TYR
219
A
ARG
220
n
221
ARG
220
A
PHE
221
n
222
PHE
221
A
LEU
222
n
223
LEU
222
A
PHE
223
n
224
PHE
223
A
ALA
224
n
225
ALA
224
A
PRO
225
n
226
PRO
225
A
GLU
226
n
227
GLU
226
A
THR
227
n
228
THR
227
A
ILE
228
n
229
ILE
228
A
GLY
229
n
230
GLY
229
A
SER
230
n
231
SER
230
A
ILE
231
n
232
ILE
231
A
THR
232
n
233
THR
232
A
TRP
233
n
234
TRP
233
A
LEU
234
n
235
LEU
234
A
SER
235
n
236
SER
235
A
ARG
236
n
237
ARG
236
A
ASN
237
n
238
ASN
237
A
GLU
238
n
239
GLU
238
A
ASP
239
n
240
ASP
239
A
LYS
240
n
241
LYS
240
A
LEU
241
n
242
LEU
241
A
LYS
242
n
243
LYS
242
A
ASN
243
n
244
ASN
243
A
ILE
244
n
245
ILE
244
A
LYS
245
n
246
LYS
245
A
MSE
246
n
247
MSE
246
A
GLY
247
n
248
GLY
247
A
LEU
248
n
249
LEU
248
A
VAL
249
n
250
VAL
249
A
ALA
250
n
251
ALA
250
A
THR
251
n
252
THR
251
A
CYS
252
n
253
CYS
252
A
VAL
253
n
254
VAL
253
A
GLY
254
n
255
GLY
254
A
ASP
255
n
256
ASP
255
A
ALA
256
n
257
ALA
256
A
GLY
257
n
258
GLY
257
A
ILE
258
n
259
ILE
258
A
LYS
259
n
260
LYS
259
A
ASN
260
n
261
ASN
260
A
TYR
261
n
262
TYR
261
A
LYS
262
n
263
LYS
262
A
ARG
263
n
264
ARG
263
A
THR
264
n
265
THR
264
A
LYS
265
n
266
LYS
265
A
PHE
266
n
267
PHE
266
A
GLY
267
n
268
GLY
267
A
ASP
268
n
269
ASP
268
A
ALA
269
n
270
ALA
269
A
GLU
270
n
271
GLU
270
A
ILE
271
n
272
ILE
271
A
ASP
272
n
273
ASP
272
A
LYS
273
n
274
LYS
273
A
ILE
274
n
275
ILE
274
A
VAL
275
n
276
VAL
275
A
GLU
276
n
277
GLU
276
A
LYS
277
n
278
LYS
277
A
VAL
278
n
279
VAL
278
A
LEU
279
n
280
LEU
279
A
MSE
280
n
281
MSE
280
A
HIS
281
n
282
HIS
281
A
CYS
282
n
283
CYS
282
A
GLY
283
n
284
GLY
283
A
SER
284
n
285
SER
284
A
GLU
285
n
286
GLU
285
A
TYR
286
n
287
TYR
286
A
TYR
287
n
288
TYR
287
A
VAL
288
n
289
VAL
288
A
ALA
289
n
290
ALA
289
A
ASP
290
n
291
ASP
290
A
PHE
291
n
292
PHE
291
A
PHE
292
n
293
PHE
292
A
PRO
293
n
294
PRO
293
A
TRP
294
n
295
TRP
294
A
GLY
295
n
296
GLY
295
A
SER
296
n
297
SER
296
A
ASP
297
n
298
ASP
297
A
GLU
298
n
299
GLU
298
A
ARG
299
n
300
ARG
299
A
GLN
300
n
301
GLN
300
A
PHE
301
n
302
PHE
301
A
SER
302
n
303
SER
302
A
SER
303
n
304
SER
303
A
PRO
304
n
305
PRO
304
A
GLY
305
n
306
GLY
305
A
ILE
306
n
307
ILE
306
A
ASN
307
n
308
ASN
307
A
LEU
308
n
309
LEU
308
A
SER
309
n
310
SER
309
A
VAL
310
n
311
VAL
310
A
GLY
311
n
312
GLY
311
A
SER
312
n
313
SER
312
A
LEU
313
n
314
LEU
313
A
MSE
314
n
315
MSE
314
A
ARG
315
n
316
ARG
315
A
SER
316
n
317
SER
316
A
CYS
317
n
318
CYS
317
A
TYR
318
n
319
TYR
318
A
GLY
319
n
320
GLY
319
A
PHE
320
n
321
PHE
320
A
ASP
321
n
322
ASP
321
A
GLY
322
n
323
GLY
322
A
TYR
323
n
324
TYR
323
A
HIS
324
n
325
HIS
324
A
THR
325
n
326
THR
325
A
SER
326
n
327
SER
326
A
ALA
327
n
328
ALA
327
A
ASP
328
n
329
ASP
328
A
ASN
329
n
330
ASN
329
A
LEU
330
n
331
LEU
330
A
CYS
331
n
332
CYS
331
A
TYR
332
n
333
TYR
332
A
MSE
333
n
334
MSE
333
A
ASN
334
n
335
ASN
334
A
LYS
335
n
336
LYS
335
A
ASP
336
n
337
ASP
336
A
GLY
337
n
338
GLY
337
A
LEU
338
n
339
LEU
338
A
ALA
339
n
340
ALA
339
A
ASP
340
n
341
ASP
340
A
SER
341
n
342
SER
341
A
TYR
342
n
343
TYR
342
A
LYS
343
n
344
LYS
343
A
THR
344
n
345
THR
344
A
TYR
345
n
346
TYR
345
A
LEU
346
n
347
LEU
346
A
GLU
347
n
348
GLU
347
A
VAL
348
n
349
VAL
348
A
ILE
349
n
350
ILE
349
A
TYR
350
n
351
TYR
350
A
THR
351
n
352
THR
351
A
ILE
352
n
353
ILE
352
A
GLU
353
n
354
GLU
353
A
ASN
354
n
355
ASN
354
A
ASN
355
n
356
ASN
355
A
ARG
356
n
357
ARG
356
A
THR
357
n
358
THR
357
A
TYR
358
n
359
TYR
358
A
LEU
359
n
360
LEU
359
A
ASN
360
n
361
ASN
360
A
LEU
361
n
362
LEU
361
A
ASN
362
n
363
ASN
362
A
PRO
363
n
364
PRO
363
A
LYS
364
n
365
LYS
364
A
CYS
365
n
366
CYS
365
A
GLU
366
n
367
GLU
366
A
PRO
367
n
368
PRO
367
A
GLN
368
n
369
GLN
368
A
LEU
369
n
370
LEU
369
A
GLY
370
n
371
GLY
370
A
LYS
371
n
372
LYS
371
A
ARG
372
n
373
ARG
372
A
GLY
373
n
374
GLY
373
A
n
375
374
A
n
376
375
A
n
377
376
A
n
378
377
A
n
379
378
A
n
380
379
A
n
381
380
A
n
382
381
A
n
383
382
A
n
384
383
A
n
385
384
A
n
386
385
A
n
387
386
A
ASP
387
n
388
ASP
387
A
GLU
388
n
389
GLU
388
A
PHE
389
n
390
PHE
389
A
ALA
390
n
391
ALA
390
A
MSE
391
n
392
MSE
391
A
PHE
392
n
393
PHE
392
A
TRP
393
n
394
TRP
393
A
VAL
394
n
395
VAL
394
A
LEU
395
n
396
LEU
395
A
ASN
396
n
397
ASN
396
A
MSE
397
n
398
MSE
397
A
SER
398
n
399
SER
398
A
ASP
399
n
400
ASP
399
A
GLY
400
n
401
GLY
400
A
LYS
401
n
402
LYS
401
A
ASN
402
n
403
ASN
402
A
SER
403
n
404
SER
403
A
LEU
404
n
405
LEU
404
A
LEU
405
n
406
LEU
405
A
ASP
406
n
407
ASP
406
A
ILE
407
n
408
ILE
407
A
ALA
408
n
409
ALA
408
A
TYR
409
n
410
TYR
409
A
LYS
410
n
411
LYS
410
A
SER
411
n
412
SER
411
A
GLY
412
n
413
GLY
412
A
MSE
413
n
414
MSE
413
A
GLU
414
n
415
GLU
414
A
PHE
415
n
416
PHE
415
A
ARG
416
n
417
ARG
416
A
ARG
417
n
418
ARG
417
A
ILE
418
n
419
ILE
418
A
LYS
419
n
420
LYS
419
A
TYR
420
n
421
TYR
420
A
ALA
421
n
422
ALA
421
A
ALA
422
n
423
ALA
422
A
ASP
423
n
424
ASP
423
A
ALA
424
n
425
ALA
424
A
LEU
425
n
426
LEU
425
A
TYR
426
n
427
TYR
426
A
ARG
427
n
428
ARG
427
A
VAL
428
n
429
VAL
428
A
GLU
429
n
430
GLU
429
A
LEU
430
n
431
LEU
430
A
LEU
431
n
432
LEU
431
A
LYS
432
n
433
LYS
432
A
LEU
433
n
434
LEU
433
A
VAL
434
n
435
VAL
434
A
0.9216
0.1874
-0.0975
0.7499
-0.0631
0.4114
0.0209
0.0462
0.0311
0.0054
0.0275
-0.1023
-0.0296
0.0239
-0.0484
0.0228
0.0107
0.0125
0.0386
-0.0118
0.0327
refined
32.2688
1.6738
64.0806
X-RAY DIFFRACTION
A
0
A
434
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
3
trimeric
gel filtration
light scattering
9390
-161
48490
A
HIS
189
A
NE2
HIS
190
1_555
A
ZN
435
B
ZN
ZN
1_555
A
ASP
195
A
OD2
ASP
196
1_555
100.9
A
HIS
189
A
NE2
HIS
190
1_555
A
ZN
435
B
ZN
ZN
1_555
A
HIS
324
A
NE2
HIS
325
1_555
115.8
A
ASP
195
A
OD2
ASP
196
1_555
A
ZN
435
B
ZN
ZN
1_555
A
HIS
324
A
NE2
HIS
325
1_555
95.7
A
HIS
189
A
NE2
HIS
190
1_555
A
ZN
435
B
ZN
ZN
1_555
A
IMD
438
E
N3
IMD
1_555
110.9
A
ASP
195
A
OD2
ASP
196
1_555
A
ZN
435
B
ZN
ZN
1_555
A
IMD
438
E
N3
IMD
1_555
104.1
A
HIS
324
A
NE2
HIS
325
1_555
A
ZN
435
B
ZN
ZN
1_555
A
IMD
438
E
N3
IMD
1_555
124.1
A
MSE
1
SELENOMETHIONINE
A
MSE
2
MET
A
MSE
41
SELENOMETHIONINE
A
MSE
42
MET
A
MSE
96
SELENOMETHIONINE
A
MSE
97
MET
A
MSE
106
SELENOMETHIONINE
A
MSE
107
MET
A
MSE
192
SELENOMETHIONINE
A
MSE
193
MET
A
MSE
246
SELENOMETHIONINE
A
MSE
247
MET
A
MSE
280
SELENOMETHIONINE
A
MSE
281
MET
A
MSE
314
SELENOMETHIONINE
A
MSE
315
MET
A
MSE
333
SELENOMETHIONINE
A
MSE
334
MET
A
MSE
391
SELENOMETHIONINE
A
MSE
392
MET
A
MSE
397
SELENOMETHIONINE
A
MSE
398
MET
A
MSE
413
SELENOMETHIONINE
A
MSE
414
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-y,x-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_555
-x+y,-x,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
53
A
N
HIS
54
A
O
TYR
168
A
O
TYR
169
A
N
GLY
169
A
N
GLY
170
A
O
PHE
223
A
O
PHE
224
A
O
ARG
220
A
O
ARG
221
A
N
LEU
183
A
N
LEU
184
A
N
GLU
180
A
N
GLU
181
A
O
LYS
245
A
O
LYS
246
A
N
VAL
249
A
N
VAL
250
A
O
GLY
311
A
O
GLY
312
A
O
MSE
314
A
O
MSE
315
A
N
ASN
260
A
N
ASN
261
A
N
TYR
261
A
N
TYR
262
A
O
ALA
289
A
O
ALA
290
A
N
VAL
61
A
N
VAL
62
A
O
TRP
64
A
O
TRP
65
A
O
ILE
86
A
O
ILE
87
A
N
VAL
77
A
N
VAL
78
A
N
ARG
78
A
N
ARG
79
A
O
GLU
154
A
O
GLU
155
A
O
TYR
153
A
O
TYR
154
A
N
MSE
106
A
N
MSE
107
A
N
HIS
116
A
N
HIS
117
A
O
PHE
138
A
O
PHE
139
A
O
GLY
400
A
O
GLY
401
A
N
TYR
358
A
N
TYR
359
A
N
LEU
359
A
N
LEU
360
A
O
LYS
432
A
O
LYS
433
1
A
CD
LYS
39
A
CD
LYS
40
1
Y
1
A
CE
LYS
39
A
CE
LYS
40
1
Y
1
A
NZ
LYS
39
A
NZ
LYS
40
1
Y
1
A
CE
LYS
56
A
CE
LYS
57
1
Y
1
A
NZ
LYS
56
A
NZ
LYS
57
1
Y
1
A
CE
LYS
60
A
CE
LYS
61
1
Y
1
A
NZ
LYS
60
A
NZ
LYS
61
1
Y
1
A
CD
LYS
81
A
CD
LYS
82
1
Y
1
A
CE
LYS
81
A
CE
LYS
82
1
Y
1
A
NZ
LYS
81
A
NZ
LYS
82
1
Y
1
A
CE
LYS
89
A
CE
LYS
90
1
Y
1
A
NZ
LYS
89
A
NZ
LYS
90
1
Y
1
A
CG
LYS
133
A
CG
LYS
134
1
Y
1
A
CD
LYS
133
A
CD
LYS
134
1
Y
1
A
CE
LYS
133
A
CE
LYS
134
1
Y
1
A
NZ
LYS
133
A
NZ
LYS
134
1
Y
1
A
CD
LYS
144
A
CD
LYS
145
1
Y
1
A
CE
LYS
144
A
CE
LYS
145
1
Y
1
A
NZ
LYS
144
A
NZ
LYS
145
1
Y
1
A
CD
GLU
147
A
CD
GLU
148
1
Y
1
A
OE1
GLU
147
A
OE1
GLU
148
1
Y
1
A
OE2
GLU
147
A
OE2
GLU
148
1
Y
1
A
ILE
374
A
ILE
375
1
Y
1
A
TYR
375
A
TYR
376
1
Y
1
A
ARG
376
A
ARG
377
1
Y
1
A
MSE
377
A
MSE
378
1
Y
1
A
ILE
378
A
ILE
379
1
Y
1
A
GLY
379
A
GLY
380
1
Y
1
A
GLY
380
A
GLY
381
1
Y
1
A
GLY
381
A
GLY
382
1
Y
1
A
SER
382
A
SER
383
1
Y
1
A
ASP
383
A
ASP
384
1
Y
1
A
TYR
384
A
TYR
385
1
Y
1
A
PRO
385
A
PRO
386
1
Y
1
A
PHE
386
A
PHE
387
1
Y
1
A
A
CB
SG
CYS
CYS
149
149
-0.101
0.016
1.812
1.711
N
1
A
PHE
62
47.64
-127.25
1
A
LYS
84
-68.72
91.03
1
A
SER
130
-150.32
67.37
1
A
PRO
190
-76.56
-127.38
1
A
CYS
193
-91.44
-62.80
1
A
ASN
196
-146.44
48.03
1
A
THR
227
65.77
-76.58
1
A
ASN
237
-140.75
32.62
1
A
PRO
293
-78.95
45.37
1
A
SER
296
-109.93
-158.57
1
A
ARG
315
-103.52
-114.49
1
A
CYS
365
64.00
169.06
384.40
29.498
2.00
-1.300
-0.650
0.000
-1.300
0.000
1.950
0.956
0.935
1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.ZINC (ZN) HAS BEEN MODELED AT THE PUTATIVE ACTIVE SITE BASED ON ITS PRESENCE AS A CO-CRYSTALLIZATION COMPOUND AND ANOMALOUS DIFFERENCE FOURIER MAP. 5.CHLORIDE (CL), IMIDAZOLE (IMD) AND (4R)-2-METHYLPENTANE-2,4-DIOL (MRD) FROM THE CRYSTALLIZATION SOLUTION HAVE BEEN MODELED IN THE SOLVENT STRUCTURE. 6.THE RAMACHANDRAN OUTLIER AT RESIDUE PRO190 IS SUPPORTED BY ELECTRON DENSITY.
0.212
0.169
0.171
2.370
29.062
1576
31177
5.100
99.980
1.00
0.40
11.776
0.122
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MAD
0.201
0.180
0.800
0.800
1.200
MAXIMUM LIKELIHOOD WITH PHASES
MASK
2.370
29.062
221
3647
40
0
3386
0.015
0.022
3506
0.001
0.020
2373
1.609
1.972
4743
0.934
3.000
5784
5.670
5.000
424
36.367
24.479
163
15.293
15.000
614
20.717
15.000
16
0.091
0.200
518
0.006
0.020
3856
0.001
0.020
716
1.654
3.000
1648
0.419
3.000
677
3.078
5.000
2673
5.741
8.000
1063
7.737
11.000
1000
0.334
0.288
2.431
108
2153
2261
20
99.780
38.179
2.37
29.062
3K9T
31178
0.189
0.189
1
9.000
5.500
99.900
0.010
2.37
2.43
0.8
12651
2267
1.017
1
5.60
100.00
0.010
2.43
2.50
0.8
12501
2234
0.907
1
5.60
100.00
0.010
2.50
2.57
1.0
12116
2175
0.775
1
5.60
100.00
0.010
2.57
2.65
1.1
11775
2106
0.680
1
5.60
100.00
0.010
2.65
2.74
1.3
11386
2039
0.570
1
5.60
100.00
0.010
2.74
2.83
1.6
11049
1977
0.487
1
5.60
100.00
0.010
2.83
2.94
1.9
10596
1897
0.398
1
5.60
100.00
0.010
2.94
3.06
2.3
10293
1845
0.323
1
5.60
100.00
0.010
3.06
3.20
3.0
9886
1777
0.254
1
5.60
100.00
0.010
3.20
3.35
3.7
9328
1681
0.204
1
5.50
100.00
0.010
3.35
3.53
4.6
8952
1617
0.162
1
5.50
100.00
0.010
3.53
3.75
5.7
8490
1533
0.126
1
5.50
100.00
0.010
3.75
4.01
6.5
7882
1431
0.109
1
5.50
100.00
0.010
4.01
4.33
7.4
7413
1343
0.095
1
5.50
100.00
0.010
4.33
4.74
8.6
6864
1244
0.082
1
5.50
100.00
0.010
4.74
5.30
8.2
6179
1128
0.083
1
5.50
100.00
0.010
5.30
6.12
7.6
5372
987
0.091
1
5.40
100.00
0.010
6.12
7.49
8.0
4593
858
0.085
1
5.40
100.00
0.010
7.49
10.60
9.4
3479
669
0.064
1
5.20
100.00
0.010
10.60
29.06
8.6
1780
370
0.064
1
4.80
95.30
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.5.0053
refinement
P.D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
5/04/2004
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.2.5
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data reduction
MOSFLM
phasing
SHELXD
phasing
autoSHARP
Crystal structure of putative peptidase (NP_348812.1) from CLOSTRIDIUM ACETOBUTYLICUM at 2.37 A resolution
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
6
N
N
CRYSTAL PACKING ANALYSIS AND SIZE-EXCLUSION CHROMATOGRAPHY COUPLED WITH STATIC LIGHT SCATTERING SUPPORT THE ASSIGNMENT OF A TRIMER AS THE SIGNIFICANT OLIGOMERIC FORM IN SOLUTION.
A
GLY
0
A
GLY
1
HELX_P
A
GLU
2
A
GLU
3
5
1
3
A
GLU
3
A
GLU
4
HELX_P
A
ASN
10
A
ASN
11
1
2
8
A
ASN
10
A
ASN
11
HELX_P
A
PHE
26
A
PHE
27
1
3
17
A
GLY
34
A
GLY
35
HELX_P
A
ARG
45
A
ARG
46
1
4
12
A
ASN
91
A
ASN
92
HELX_P
A
VAL
95
A
VAL
96
5
5
5
A
LEU
108
A
LEU
109
HELX_P
A
LYS
112
A
LYS
113
1
6
5
A
THR
141
A
THR
142
HELX_P
A
GLU
147
A
GLU
148
1
7
7
A
ASN
196
A
ASN
197
HELX_P
A
SER
211
A
SER
212
1
8
16
A
THR
227
A
THR
228
HELX_P
A
ASN
237
A
ASN
238
1
9
11
A
GLU
238
A
GLU
239
HELX_P
A
LYS
242
A
LYS
243
5
10
5
A
ALA
269
A
ALA
270
HELX_P
A
CYS
282
A
CYS
283
1
11
14
A
ASP
297
A
ASP
298
HELX_P
A
SER
302
A
SER
303
1
12
6
A
ASN
329
A
ASN
330
HELX_P
A
MSE
333
A
MSE
334
5
13
5
A
ASN
334
A
ASN
335
HELX_P
A
ASN
355
A
ASN
356
1
14
22
A
ASP
387
A
ASP
388
HELX_P
A
SER
398
A
SER
399
1
15
12
A
LEU
404
A
LEU
405
HELX_P
A
GLY
412
A
GLY
413
1
16
9
A
GLU
414
A
GLU
415
HELX_P
A
VAL
428
A
VAL
429
1
17
15
disulf
2.039
A
A
A
CYS
331
A
SG
CYS
332
1_555
A
CYS
331
A
SG
CYS
332
5_556
covale
1.345
both
A
GLY
0
A
C
GLY
1
1_555
A
MSE
1
A
N
MSE
2
1_555
covale
1.341
both
A
MSE
1
A
C
MSE
2
1_555
A
GLU
2
A
N
GLU
3
1_555
covale
1.334
both
A
THR
40
A
C
THR
41
1_555
A
MSE
41
A
N
MSE
42
1_555
covale
1.333
both
A
MSE
41
A
C
MSE
42
1_555
A
ASP
42
A
N
ASP
43
1_555
covale
1.333
both
A
VAL
95
A
C
VAL
96
1_555
A
MSE
96
A
N
MSE
97
1_555
covale
1.332
both
A
MSE
96
A
C
MSE
97
1_555
A
SER
97
A
N
SER
98
1_555
covale
1.318
both
A
THR
105
A
C
THR
106
1_555
A
MSE
106
A
N
MSE
107
1_555
covale
1.328
both
A
MSE
106
A
C
MSE
107
1_555
A
THR
107
A
N
THR
108
1_555
covale
1.328
both
A
SER
191
A
C
SER
192
1_555
A
MSE
192
A
N
MSE
193
1_555
covale
1.330
both
A
MSE
192
A
C
MSE
193
1_555
A
CYS
193
A
N
CYS
194
1_555
covale
1.322
both
A
LYS
245
A
C
LYS
246
1_555
A
MSE
246
A
N
MSE
247
1_555
covale
1.321
both
A
MSE
246
A
C
MSE
247
1_555
A
GLY
247
A
N
GLY
248
1_555
covale
1.329
both
A
LEU
279
A
C
LEU
280
1_555
A
MSE
280
A
N
MSE
281
1_555
covale
1.323
both
A
MSE
280
A
C
MSE
281
1_555
A
HIS
281
A
N
HIS
282
1_555
covale
1.330
both
A
LEU
313
A
C
LEU
314
1_555
A
MSE
314
A
N
MSE
315
1_555
covale
1.326
both
A
MSE
314
A
C
MSE
315
1_555
A
ARG
315
A
N
ARG
316
1_555
covale
1.329
both
A
TYR
332
A
C
TYR
333
1_555
A
MSE
333
A
N
MSE
334
1_555
covale
1.318
both
A
MSE
333
A
C
MSE
334
1_555
A
ASN
334
A
N
ASN
335
1_555
covale
1.320
both
A
ALA
390
A
C
ALA
391
1_555
A
MSE
391
A
N
MSE
392
1_555
covale
1.344
both
A
MSE
391
A
C
MSE
392
1_555
A
PHE
392
A
N
PHE
393
1_555
covale
1.322
both
A
ASN
396
A
C
ASN
397
1_555
A
MSE
397
A
N
MSE
398
1_555
covale
1.330
both
A
MSE
397
A
C
MSE
398
1_555
A
SER
398
A
N
SER
399
1_555
covale
1.326
both
A
GLY
412
A
C
GLY
413
1_555
A
MSE
413
A
N
MSE
414
1_555
covale
1.320
both
A
MSE
413
A
C
MSE
414
1_555
A
GLU
414
A
N
GLU
415
1_555
metalc
2.052
A
HIS
189
A
NE2
HIS
190
1_555
A
ZN
435
B
ZN
ZN
1_555
metalc
1.941
A
ASP
195
A
OD2
ASP
196
1_555
A
ZN
435
B
ZN
ZN
1_555
metalc
2.055
A
HIS
324
A
NE2
HIS
325
1_555
A
ZN
435
B
ZN
ZN
1_555
metalc
2.038
A
ZN
435
B
ZN
ZN
1_555
A
IMD
438
E
N3
IMD
1_555
HYDROLASE
putative peptidase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, Aminopeptidase, HYDROLASE
A
ASP
195
A
ASP
196
1
A
ASN
196
A
ASN
197
2.43
Q97H19_CLOAB
UNP
1
1
Q97H19
MEEINKYIQNSSETGGEIYNLIEELFPICRSITGNGVRKTMDIIRKHIPLEIHEVKSGTKVFDWTVPKEWNIKDAYVRNS
KGEKVIDFKENNLHVMSYSVPVHKTMTLDELKPYLHTIPGNKDRIPYLTSYYKENWGFSLTQNKFDELCDDDYEVVIDSS
LEDGSLTYGEYYIRGELEEEILLTTYTCHPSMCNDNLSGVALITFIAKALSKLKTKYSYRFLFAPETIGSITWLSRNEDK
LKNIKMGLVATCVGDAGIKNYKRTKFGDAEIDKIVEKVLMHCGSEYYVADFFPWGSDERQFSSPGINLPVGSLMRSCYGF
DGYHTSADNLCYMNKDGLADSYKTYLEVIYTIENNRTYLNLNPKCEPQLGKRGIYRMIGGGSDYPFDEFAMFWVLNMSDG
KNSLLDIAYKSGMEFRRIKYAADALYRVELLKLV
1
434
3K9T
1
434
Q97H19
A
1
2
435
1
expression tag
GLY
0
3K9T
A
Q97H19
UNP
1
1
PRO
SEE REMARK 999
SER
309
3K9T
A
Q97H19
UNP
309
310
8
2
4
2
3
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLU
51
A
GLU
52
A
LYS
56
A
LYS
57
A
SER
165
A
SER
166
A
ILE
173
A
ILE
174
A
SER
218
A
SER
219
A
ALA
224
A
ALA
225
A
GLU
180
A
GLU
181
A
TYR
186
A
TYR
187
A
ILE
244
A
ILE
245
A
VAL
249
A
VAL
250
A
VAL
310
A
VAL
311
A
MSE
314
A
MSE
315
A
LYS
259
A
LYS
260
A
LYS
262
A
LYS
263
A
TYR
286
A
TYR
287
A
ALA
289
A
ALA
290
A
LYS
60
A
LYS
61
A
VAL
61
A
VAL
62
A
TRP
64
A
TRP
65
A
THR
65
A
THR
66
A
LYS
84
A
LYS
85
A
ASP
87
A
ASP
88
A
GLU
69
A
GLU
70
A
ARG
78
A
ARG
79
A
ASP
152
A
ASP
153
A
GLU
162
A
GLU
163
A
VAL
102
A
VAL
103
A
THR
107
A
THR
108
A
LEU
115
A
LEU
116
A
HIS
116
A
HIS
117
A
PHE
138
A
PHE
139
A
SER
139
A
SER
140
A
ASP
399
A
ASP
400
A
SER
403
A
SER
404
A
THR
357
A
THR
358
A
ASN
360
A
ASN
361
A
LEU
431
A
LEU
432
A
LEU
433
A
LEU
434
BINDING SITE FOR RESIDUE ZN A 435
A
ZN
435
Software
4
BINDING SITE FOR RESIDUE CL A 436
A
CL
436
Software
3
BINDING SITE FOR RESIDUE CL A 437
A
CL
437
Software
1
BINDING SITE FOR RESIDUE IMD A 438
A
IMD
438
Software
7
BINDING SITE FOR RESIDUE MRD A 440
A
MRD
440
Software
8
BINDING SITE FOR RESIDUE MRD A 441
A
MRD
441
Software
7
BINDING SITE FOR RESIDUE MRD A 442
A
MRD
442
Software
4
A
HIS
189
A
HIS
190
4
1_555
A
ASP
195
A
ASP
196
4
1_555
A
HIS
324
A
HIS
325
4
1_555
A
IMD
438
E
IMD
4
1_555
A
MSE
413
A
MSE
414
3
1_555
A
GLU
414
A
GLU
415
3
1_555
A
ARG
417
A
ARG
418
3
1_555
A
TYR
172
A
TYR
173
1
1_555
A
TYR
186
A
TYR
187
7
1_555
A
HIS
189
A
HIS
190
7
1_555
A
ASP
195
A
ASP
196
7
1_555
A
GLU
226
A
GLU
227
7
1_555
A
GLY
295
A
GLY
296
7
1_555
A
HIS
324
A
HIS
325
7
1_555
A
ZN
435
B
ZN
7
1_555
A
TYR
19
A
TYR
20
8
1_555
A
ASN
329
A
ASN
330
8
5_556
A
LEU
330
A
LEU
331
8
1_555
A
CYS
331
A
CYS
332
8
5_556
A
MSE
333
A
MSE
334
8
1_555
A
LYS
335
A
LYS
336
8
1_555
A
MRD
442
I
MRD
8
1_555
A
HOH
504
J
HOH
8
1_555
A
HIS
47
A
HIS
48
7
1_555
A
HIS
47
A
HIS
48
7
16_545
A
TYR
171
A
TYR
172
7
16_545
A
LYS
208
A
LYS
209
7
1_555
A
SER
211
A
SER
212
7
1_555
A
LYS
212
A
LYS
213
7
16_545
A
LYS
212
A
LYS
213
7
1_555
A
TYR
19
A
TYR
20
4
5_556
A
TYR
19
A
TYR
20
4
1_555
A
LEU
330
A
LEU
331
4
1_555
A
MRD
440
G
MRD
4
1_555
155
H 3 2