0.003945
0.000000
0.000000
0.000000
0.003945
0.000000
0.000000
0.000000
0.003945
0.00000
0.00000
0.00000
Argiriadi, M.A.
Talanian, R.V.
Borhani, D.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
96
90.00
90.00
90.00
253.508
253.508
253.508
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C20 H15 N5 O2 S
389.430
6-{5-[(2-aminopyrimidin-4-yl)amino]-2-hydroxyphenyl}-N-methylidene-1-benzothiophene-2-carboxamide
6-(5-(2-aminopyrimidin-4-ylamino)-2-hydroxyphenyl)-N-methylbenzo[b]thiophene-2-carboxamide
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
Y
250
N
C
Y
251
N
N
N
252
N
O
Y
253
N
S
Y
254
N
C
Y
255
N
N
N
256
N
O
Y
257
N
C
N
258
N
N
Y
259
N
C
N
260
N
N
Y
261
N
C
N
262
N
N
Y
263
N
C
Y
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
N
276
N
C
N
277
N
C
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
O
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
R
C
N
352
N
O
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
N
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
N
402
N
O
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
N
N
416
S
C
N
417
N
C
N
418
N
O
N
419
N
C
N
420
N
C
N
421
N
C
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
Y
238
N
doub
Y
239
N
sing
Y
240
N
sing
N
241
N
sing
N
242
N
sing
Y
243
N
sing
Y
244
N
sing
Y
245
N
doub
Y
246
N
sing
N
247
N
sing
N
248
N
doub
Y
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
Y
256
N
doub
Y
257
N
sing
N
258
N
sing
N
259
N
doub
Y
260
N
sing
N
261
N
sing
Y
262
N
sing
Y
263
N
doub
Y
264
N
sing
Y
265
N
doub
N
266
N
sing
N
267
N
sing
Y
268
N
doub
Y
269
N
sing
Y
270
N
sing
N
271
N
sing
Y
272
N
doub
N
273
N
sing
Y
274
N
doub
N
275
N
sing
Y
276
N
sing
Y
277
N
sing
Y
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
Y
294
N
doub
Y
295
N
sing
Y
296
N
sing
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
Y
391
N
doub
Y
392
N
sing
Y
393
N
sing
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
20
330
333
10.1016/j.bmcl.2009.10.102
19919896
2,4-Diaminopyrimidine MK2 inhibitors. Part I: Observation of an unexpected inhibitor binding mode.
2010
10.2210/pdb3ka0/pdb
pdb_00003ka0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2005-09-15
MAR scanner 345 mm plate
Osmic optics (Rigaku USA)
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
OTHER
36987.707
MAP kinase-activated protein kinase 2
2.7.11.1
Kinase Domain
T222E
1
man
polymer
389.430
6-{5-[(2-aminopyrimidin-4-yl)amino]-2-hydroxyphenyl}-N-methylidene-1-benzothiophene-2-carboxamide
1
syn
non-polymer
18.015
water
1
nat
water
MAPK-activated protein kinase 2, MAPKAP kinase 2, MAPKAPK-2, MK2
no
no
HVKSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYEN
LYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLT
DFGFAKETTSHNSLTEPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEF
PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPLHTSRVLKEDKERWEDVKEEMTSALATMRVD
HVKSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYEN
LYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLT
DFGFAKETTSHNSLTEPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEF
PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPLHTSRVLKEDKERWEDVKEEMTSALATMRVD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
MAPKAPK2
9606
Homo sapiens
562
Escherichia coli
Plasmid
pGEX4T-1
1
4.59
73.19
VAPOR DIFFUSION, SITTING DROP
5.5
2M Sodium Malonate
pH 5.5
Anapoe 80 , VAPOR DIFFUSION, SITTING DROP, temperature 291.0K
291.0
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Advisory
Version format compliance
Database references
Derived calculations
Data collection
1
0
2010-01-12
1
1
2011-07-13
1
2
2021-10-13
1
3
2024-02-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2009-10-16
REL
REL
MK3
6-{5-[(2-aminopyrimidin-4-yl)amino]-2-hydroxyphenyl}-N-methylidene-1-benzothiophene-2-carboxamide
HOH
water
MK3
500
2
MK3
MK3
500
A
HOH
1000
3
HOH
HOH
1000
A
HIS
47
n
1
HIS
47
A
VAL
48
n
2
VAL
48
A
LYS
49
n
3
LYS
49
A
SER
50
n
4
SER
50
A
GLY
51
n
5
GLY
51
A
LEU
52
n
6
LEU
52
A
GLN
53
n
7
GLN
53
A
ILE
54
n
8
ILE
54
A
LYS
55
n
9
LYS
55
A
LYS
56
n
10
LYS
56
A
ASN
57
n
11
ASN
57
A
ALA
58
n
12
ALA
58
A
ILE
59
n
13
ILE
59
A
ILE
60
n
14
ILE
60
A
ASP
61
n
15
ASP
61
A
ASP
62
n
16
ASP
62
A
TYR
63
n
17
TYR
63
A
LYS
64
n
18
LYS
64
A
VAL
65
n
19
VAL
65
A
THR
66
n
20
THR
66
A
SER
67
n
21
SER
67
A
GLN
68
n
22
GLN
68
A
VAL
69
n
23
VAL
69
A
LEU
70
n
24
LEU
70
A
GLY
71
n
25
GLY
71
A
LEU
72
n
26
LEU
72
A
GLY
73
n
27
GLY
73
A
ILE
74
n
28
ILE
74
A
ASN
75
n
29
ASN
75
A
GLY
76
n
30
GLY
76
A
LYS
77
n
31
LYS
77
A
VAL
78
n
32
VAL
78
A
LEU
79
n
33
LEU
79
A
GLN
80
n
34
GLN
80
A
ILE
81
n
35
ILE
81
A
PHE
82
n
36
PHE
82
A
ASN
83
n
37
ASN
83
A
LYS
84
n
38
LYS
84
A
ARG
85
n
39
ARG
85
A
THR
86
n
40
THR
86
A
GLN
87
n
41
GLN
87
A
GLU
88
n
42
GLU
88
A
LYS
89
n
43
LYS
89
A
PHE
90
n
44
PHE
90
A
ALA
91
n
45
ALA
91
A
LEU
92
n
46
LEU
92
A
LYS
93
n
47
LYS
93
A
MET
94
n
48
MET
94
A
LEU
95
n
49
LEU
95
A
GLN
96
n
50
GLN
96
A
ASP
97
n
51
ASP
97
A
CYS
98
n
52
CYS
98
A
PRO
99
n
53
PRO
99
A
LYS
100
n
54
LYS
100
A
ALA
101
n
55
ALA
101
A
ARG
102
n
56
ARG
102
A
ARG
103
n
57
ARG
103
A
GLU
104
n
58
GLU
104
A
VAL
105
n
59
VAL
105
A
GLU
106
n
60
GLU
106
A
LEU
107
n
61
LEU
107
A
HIS
108
n
62
HIS
108
A
TRP
109
n
63
TRP
109
A
ARG
110
n
64
ARG
110
A
ALA
111
n
65
ALA
111
A
SER
112
n
66
SER
112
A
GLN
113
n
67
GLN
113
A
CYS
114
n
68
CYS
114
A
PRO
115
n
69
PRO
115
A
HIS
116
n
70
HIS
116
A
ILE
117
n
71
ILE
117
A
VAL
118
n
72
VAL
118
A
ARG
119
n
73
ARG
119
A
ILE
120
n
74
ILE
120
A
VAL
121
n
75
VAL
121
A
ASP
122
n
76
ASP
122
A
VAL
123
n
77
VAL
123
A
TYR
124
n
78
TYR
124
A
GLU
125
n
79
GLU
125
A
ASN
126
n
80
ASN
126
A
LEU
127
n
81
LEU
127
A
TYR
128
n
82
TYR
128
A
ALA
129
n
83
ALA
129
A
GLY
130
n
84
GLY
130
A
ARG
131
n
85
ARG
131
A
LYS
132
n
86
LYS
132
A
CYS
133
n
87
CYS
133
A
LEU
134
n
88
LEU
134
A
LEU
135
n
89
LEU
135
A
ILE
136
n
90
ILE
136
A
VAL
137
n
91
VAL
137
A
MET
138
n
92
MET
138
A
GLU
139
n
93
GLU
139
A
CYS
140
n
94
CYS
140
A
LEU
141
n
95
LEU
141
A
ASP
142
n
96
ASP
142
A
GLY
143
n
97
GLY
143
A
GLY
144
n
98
GLY
144
A
GLU
145
n
99
GLU
145
A
LEU
146
n
100
LEU
146
A
PHE
147
n
101
PHE
147
A
SER
148
n
102
SER
148
A
ARG
149
n
103
ARG
149
A
ILE
150
n
104
ILE
150
A
GLN
151
n
105
GLN
151
A
ASP
152
n
106
ASP
152
A
n
107
153
A
n
108
154
A
n
109
155
A
n
110
156
A
n
111
157
A
n
112
158
A
THR
159
n
113
THR
159
A
GLU
160
n
114
GLU
160
A
ARG
161
n
115
ARG
161
A
GLU
162
n
116
GLU
162
A
ALA
163
n
117
ALA
163
A
SER
164
n
118
SER
164
A
GLU
165
n
119
GLU
165
A
ILE
166
n
120
ILE
166
A
MET
167
n
121
MET
167
A
LYS
168
n
122
LYS
168
A
SER
169
n
123
SER
169
A
ILE
170
n
124
ILE
170
A
GLY
171
n
125
GLY
171
A
GLU
172
n
126
GLU
172
A
ALA
173
n
127
ALA
173
A
ILE
174
n
128
ILE
174
A
GLN
175
n
129
GLN
175
A
TYR
176
n
130
TYR
176
A
LEU
177
n
131
LEU
177
A
HIS
178
n
132
HIS
178
A
SER
179
n
133
SER
179
A
ILE
180
n
134
ILE
180
A
ASN
181
n
135
ASN
181
A
ILE
182
n
136
ILE
182
A
ALA
183
n
137
ALA
183
A
HIS
184
n
138
HIS
184
A
ARG
185
n
139
ARG
185
A
ASP
186
n
140
ASP
186
A
VAL
187
n
141
VAL
187
A
LYS
188
n
142
LYS
188
A
PRO
189
n
143
PRO
189
A
GLU
190
n
144
GLU
190
A
ASN
191
n
145
ASN
191
A
LEU
192
n
146
LEU
192
A
LEU
193
n
147
LEU
193
A
TYR
194
n
148
TYR
194
A
THR
195
n
149
THR
195
A
SER
196
n
150
SER
196
A
LYS
197
n
151
LYS
197
A
ARG
198
n
152
ARG
198
A
PRO
199
n
153
PRO
199
A
ASN
200
n
154
ASN
200
A
ALA
201
n
155
ALA
201
A
ILE
202
n
156
ILE
202
A
LEU
203
n
157
LEU
203
A
LYS
204
n
158
LYS
204
A
LEU
205
n
159
LEU
205
A
THR
206
n
160
THR
206
A
ASP
207
n
161
ASP
207
A
PHE
208
n
162
PHE
208
A
GLY
209
n
163
GLY
209
A
PHE
210
n
164
PHE
210
A
ALA
211
n
165
ALA
211
A
LYS
212
n
166
LYS
212
A
GLU
213
n
167
GLU
213
A
THR
214
n
168
THR
214
A
n
169
215
A
n
170
216
A
n
171
217
A
n
172
218
A
n
173
219
A
n
174
220
A
n
175
221
A
n
176
222
A
n
177
223
A
n
178
224
A
n
179
225
A
n
180
226
A
n
181
227
A
n
182
228
A
n
183
229
A
n
184
230
A
n
185
231
A
n
186
232
A
n
187
233
A
n
188
234
A
n
189
235
A
n
190
236
A
n
191
237
A
n
192
238
A
LYS
239
n
193
LYS
239
A
TYR
240
n
194
TYR
240
A
ASP
241
n
195
ASP
241
A
LYS
242
n
196
LYS
242
A
SER
243
n
197
SER
243
A
CYS
244
n
198
CYS
244
A
ASP
245
n
199
ASP
245
A
MET
246
n
200
MET
246
A
TRP
247
n
201
TRP
247
A
SER
248
n
202
SER
248
A
LEU
249
n
203
LEU
249
A
GLY
250
n
204
GLY
250
A
VAL
251
n
205
VAL
251
A
ILE
252
n
206
ILE
252
A
MET
253
n
207
MET
253
A
TYR
254
n
208
TYR
254
A
ILE
255
n
209
ILE
255
A
LEU
256
n
210
LEU
256
A
LEU
257
n
211
LEU
257
A
CYS
258
n
212
CYS
258
A
GLY
259
n
213
GLY
259
A
TYR
260
n
214
TYR
260
A
PRO
261
n
215
PRO
261
A
PRO
262
n
216
PRO
262
A
PHE
263
n
217
PHE
263
A
TYR
264
n
218
TYR
264
A
n
219
265
A
n
220
266
A
n
221
267
A
n
222
268
A
n
223
269
A
n
224
270
A
n
225
271
A
n
226
272
A
n
227
273
A
GLY
274
n
228
GLY
274
A
MET
275
n
229
MET
275
A
LYS
276
n
230
LYS
276
A
THR
277
n
231
THR
277
A
ARG
278
n
232
ARG
278
A
ILE
279
n
233
ILE
279
A
ARG
280
n
234
ARG
280
A
MET
281
n
235
MET
281
A
GLY
282
n
236
GLY
282
A
GLN
283
n
237
GLN
283
A
TYR
284
n
238
TYR
284
A
GLU
285
n
239
GLU
285
A
PHE
286
n
240
PHE
286
A
PRO
287
n
241
PRO
287
A
ASN
288
n
242
ASN
288
A
PRO
289
n
243
PRO
289
A
GLU
290
n
244
GLU
290
A
TRP
291
n
245
TRP
291
A
SER
292
n
246
SER
292
A
GLU
293
n
247
GLU
293
A
VAL
294
n
248
VAL
294
A
SER
295
n
249
SER
295
A
GLU
296
n
250
GLU
296
A
GLU
297
n
251
GLU
297
A
VAL
298
n
252
VAL
298
A
LYS
299
n
253
LYS
299
A
MET
300
n
254
MET
300
A
LEU
301
n
255
LEU
301
A
ILE
302
n
256
ILE
302
A
ARG
303
n
257
ARG
303
A
ASN
304
n
258
ASN
304
A
LEU
305
n
259
LEU
305
A
LEU
306
n
260
LEU
306
A
LYS
307
n
261
LYS
307
A
THR
308
n
262
THR
308
A
GLU
309
n
263
GLU
309
A
PRO
310
n
264
PRO
310
A
THR
311
n
265
THR
311
A
GLN
312
n
266
GLN
312
A
ARG
313
n
267
ARG
313
A
MET
314
n
268
MET
314
A
THR
315
n
269
THR
315
A
ILE
316
n
270
ILE
316
A
THR
317
n
271
THR
317
A
GLU
318
n
272
GLU
318
A
PHE
319
n
273
PHE
319
A
MET
320
n
274
MET
320
A
ASN
321
n
275
ASN
321
A
HIS
322
n
276
HIS
322
A
PRO
323
n
277
PRO
323
A
TRP
324
n
278
TRP
324
A
ILE
325
n
279
ILE
325
A
MET
326
n
280
MET
326
A
GLN
327
n
281
GLN
327
A
SER
328
n
282
SER
328
A
THR
329
n
283
THR
329
A
LYS
330
n
284
LYS
330
A
VAL
331
n
285
VAL
331
A
PRO
332
n
286
PRO
332
A
GLN
333
n
287
GLN
333
A
THR
334
n
288
THR
334
A
PRO
335
n
289
PRO
335
A
LEU
336
n
290
LEU
336
A
HIS
337
n
291
HIS
337
A
THR
338
n
292
THR
338
A
SER
339
n
293
SER
339
A
ARG
340
n
294
ARG
340
A
VAL
341
n
295
VAL
341
A
LEU
342
n
296
LEU
342
A
LYS
343
n
297
LYS
343
A
GLU
344
n
298
GLU
344
A
ASP
345
n
299
ASP
345
A
LYS
346
n
300
LYS
346
A
GLU
347
n
301
GLU
347
A
ARG
348
n
302
ARG
348
A
TRP
349
n
303
TRP
349
A
GLU
350
n
304
GLU
350
A
ASP
351
n
305
ASP
351
A
VAL
352
n
306
VAL
352
A
LYS
353
n
307
LYS
353
A
GLU
354
n
308
GLU
354
A
GLU
355
n
309
GLU
355
A
MET
356
n
310
MET
356
A
THR
357
n
311
THR
357
A
SER
358
n
312
SER
358
A
ALA
359
n
313
ALA
359
A
LEU
360
n
314
LEU
360
A
ALA
361
n
315
ALA
361
A
THR
362
n
316
THR
362
A
MET
363
n
317
MET
363
A
ARG
364
n
318
ARG
364
A
n
319
365
A
n
320
366
A
1.0254
0.0085
0.1055
1.5513
0.5181
7.9386
-0.1129
-0.0550
0.0509
-0.0222
0.0326
-0.2669
0.1032
0.9530
0.0803
-0.1745
-0.0381
0.0464
0.0667
0.0614
-0.0366
refined
230.0250
84.4010
192.5240
X-RAY DIFFRACTION
A
47
A
138
X-RAY DIFFRACTION
1
A
139
A
364
X-RAY DIFFRACTION
1
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
55
A
N
LYS
9
A
O
GLU
125
A
O
GLU
79
A
N
VAL
121
A
N
VAL
75
A
O
VAL
137
A
O
VAL
91
A
O
MET
138
A
O
MET
92
A
N
ALA
91
A
N
ALA
45
A
O
LEU
92
A
O
LEU
46
A
N
LEU
79
A
N
LEU
33
A
O
PHE
82
A
O
PHE
36
A
N
LYS
64
A
N
LYS
18
A
N
ALA
183
A
N
ALA
137
A
O
LYS
212
A
O
LYS
166
A
N
LEU
193
A
N
LEU
147
A
O
LYS
204
A
O
LYS
158
1
A
ARG
153
A
ARG
107
1
Y
1
A
GLY
154
A
GLY
108
1
Y
1
A
ASP
155
A
ASP
109
1
Y
1
A
GLN
156
A
GLN
110
1
Y
1
A
ALA
157
A
ALA
111
1
Y
1
A
PHE
158
A
PHE
112
1
Y
1
A
THR
215
A
THR
169
1
Y
1
A
SER
216
A
SER
170
1
Y
1
A
HIS
217
A
HIS
171
1
Y
1
A
ASN
218
A
ASN
172
1
Y
1
A
SER
219
A
SER
173
1
Y
1
A
LEU
220
A
LEU
174
1
Y
1
A
THR
221
A
THR
175
1
Y
1
A
GLU
222
A
GLU
176
1
Y
1
A
PRO
223
A
PRO
177
1
Y
1
A
CYS
224
A
CYS
178
1
Y
1
A
TYR
225
A
TYR
179
1
Y
1
A
THR
226
A
THR
180
1
Y
1
A
PRO
227
A
PRO
181
1
Y
1
A
TYR
228
A
TYR
182
1
Y
1
A
TYR
229
A
TYR
183
1
Y
1
A
VAL
230
A
VAL
184
1
Y
1
A
ALA
231
A
ALA
185
1
Y
1
A
PRO
232
A
PRO
186
1
Y
1
A
GLU
233
A
GLU
187
1
Y
1
A
VAL
234
A
VAL
188
1
Y
1
A
LEU
235
A
LEU
189
1
Y
1
A
GLY
236
A
GLY
190
1
Y
1
A
PRO
237
A
PRO
191
1
Y
1
A
GLU
238
A
GLU
192
1
Y
1
A
SER
265
A
SER
219
1
Y
1
A
ASN
266
A
ASN
220
1
Y
1
A
HIS
267
A
HIS
221
1
Y
1
A
GLY
268
A
GLY
222
1
Y
1
A
LEU
269
A
LEU
223
1
Y
1
A
ALA
270
A
ALA
224
1
Y
1
A
ILE
271
A
ILE
225
1
Y
1
A
SER
272
A
SER
226
1
Y
1
A
PRO
273
A
PRO
227
1
Y
1
A
VAL
365
A
VAL
319
1
Y
1
A
ASP
366
A
ASP
320
1
Y
1
A
ILE
60
-69.13
1.16
1
A
ASN
75
-101.67
56.03
1
A
GLN
87
76.43
-6.06
1
A
ASP
186
-143.27
44.25
1
A
ASP
207
64.42
97.77
1
A
CYS
258
-144.42
-27.10
1
A
LYS
307
-38.99
130.71
1
A
GLN
327
-109.02
79.82
1
A
LYS
330
-168.89
4.00
1
A
GLN
333
-70.65
23.77
1
A
GLU
347
96.64
-39.21
62.424
0.923
0.895
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.26500
0.22974
0.23157
2.90
19.86
796
15103
5.0
99.76
24.975
0.226
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.425
0.306
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.90
19.86
1
2306
28
0
2277
0.014
0.022
2351
1.563
1.983
3164
5.416
5.000
275
39.101
23.905
105
20.003
15.000
457
18.197
15.000
17
0.098
0.200
345
0.004
0.020
1772
0.241
0.200
1064
0.322
0.200
1609
0.137
0.200
71
0.168
0.200
30
0.041
0.200
2
1.031
1.500
1424
1.231
2.000
2258
2.321
3.000
1055
3.354
4.500
906
0.280
0.267
2.974
46
1068
20
100.00
2.9
50.0
3KA0
16005
15117
2
2
0.093
1
10.9
8.2
86.2
2.90
3.00
3.71
0.574
1
8.5
data collection
HKL-2000
phasing
MOLREP
refinement
REFMAC
5.2.0019
data reduction
HKL-2000
data scaling
HKL-2000
MK2 complex with inhibitor 6-(5-(2-aminopyrimidin-4-ylamino)-2-hydroxyphenyl)-N-methylbenzo[b]thiophene-2-carboxamide
1
N
N
2
N
N
3
N
N
A
ALA
58
A
ALA
12
HELX_P
A
ASP
61
A
ASP
15
5
1
4
A
THR
66
A
THR
20
HELX_P
A
LEU
72
A
LEU
26
1
2
7
A
CYS
98
A
CYS
52
HELX_P
A
SER
112
A
SER
66
1
3
15
A
GLU
145
A
GLU
99
HELX_P
A
GLN
151
A
GLN
105
1
4
7
A
THR
159
A
THR
113
HELX_P
A
ILE
180
A
ILE
134
1
5
22
A
LYS
188
A
LYS
142
HELX_P
A
GLU
190
A
GLU
144
5
6
3
A
LYS
239
A
LYS
193
HELX_P
A
GLY
259
A
GLY
213
1
7
21
A
GLY
274
A
GLY
228
HELX_P
A
GLY
282
A
GLY
236
1
8
9
A
SER
295
A
SER
249
HELX_P
A
LEU
306
A
LEU
260
1
9
12
A
GLU
309
A
GLU
263
HELX_P
A
ARG
313
A
ARG
267
5
10
5
A
THR
315
A
THR
269
HELX_P
A
ASN
321
A
ASN
275
1
11
7
A
HIS
322
A
HIS
276
HELX_P
A
GLN
327
A
GLN
281
1
12
6
A
HIS
337
A
HIS
291
HELX_P
A
ASP
345
A
ASP
299
1
13
9
A
ARG
348
A
ARG
302
HELX_P
A
ARG
364
A
ARG
318
1
14
17
TRANSFERASE
MAPKAP-K2, MK2, TNFalpha, diaminopyrimidine, ATP-binding, Kinase, Nucleotide-binding, Phosphoprotein, Serine/threonine-protein kinase, Transferase
A
ASN
288
A
ASN
242
1
A
PRO
289
A
PRO
243
8.87
MAPK2_HUMAN
UNP
1
47
P49137
HVKSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYEN
LYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLT
DFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEF
PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPLHTSRVLKEDKERWEDVKEEMTSALATMRVD
47
366
3KA0
47
366
P49137
A
1
1
320
1
THR
engineered mutation
GLU
222
3KA0
A
P49137
UNP
222
176
6
2
2
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
54
A
ILE
8
A
LYS
55
A
LYS
9
A
ILE
120
A
ILE
74
A
TYR
128
A
TYR
82
A
ARG
131
A
ARG
85
A
GLU
139
A
GLU
93
A
LYS
89
A
LYS
43
A
GLN
96
A
GLN
50
A
LEU
79
A
LEU
33
A
ASN
83
A
ASN
37
A
TYR
63
A
TYR
17
A
LYS
64
A
LYS
18
A
ILE
182
A
ILE
136
A
ALA
183
A
ALA
137
A
LYS
212
A
LYS
166
A
GLU
213
A
GLU
167
A
LEU
192
A
LEU
146
A
TYR
194
A
TYR
148
A
LEU
203
A
LEU
157
A
LEU
205
A
LEU
159
BINDING SITE FOR RESIDUE MK3 A 500
A
MK3
500
Software
13
A
VAL
78
A
VAL
32
13
1_555
A
GLN
80
A
GLN
34
13
1_555
A
LYS
89
A
LYS
43
13
1_555
A
ALA
91
A
ALA
45
13
1_555
A
LYS
93
A
LYS
47
13
1_555
A
MET
138
A
MET
92
13
1_555
A
GLU
139
A
GLU
93
13
1_555
A
CYS
140
A
CYS
94
13
1_555
A
LEU
141
A
LEU
95
13
1_555
A
ASP
142
A
ASP
96
13
1_555
A
THR
206
A
THR
160
13
1_555
A
ASP
207
A
ASP
161
13
1_555
A
HOH
1000
C
HOH
13
1_555
210
F 41 3 2