0.012051
0.006958
0.000000
0.000000
0.013916
0.000000
0.000000
0.000000
0.009830
0.00000
0.00000
0.00000
Ferreira, R.S.
Eidam, O.
Shoichet, B.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
82.978
82.978
101.733
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C17 H16 Br N3 O2
374.232
N-[2-(1H-benzimidazol-2-yl)ethyl]-2-(2-bromophenoxy)acetamide
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C2 H6 O2 S2
126.198
S-methyl methanesulfonothioate
S-Methyl methanethiosulfonate
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
BR
Y
76
N
C
Y
77
N
C
Y
78
N
C
Y
79
N
C
Y
80
N
C
Y
81
N
C
Y
82
N
C
Y
83
N
C
N
84
N
C
N
85
N
C
N
86
N
C
Y
87
N
N
N
88
N
N
Y
89
N
N
N
90
N
O
N
91
N
C
Y
92
N
C
Y
93
N
C
Y
94
N
C
Y
95
N
C
Y
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
R
C
N
115
N
C
N
116
N
O
N
117
N
C
N
118
N
S
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
C
N
128
N
O
N
129
N
C
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
C
N
143
N
C
N
144
N
O
N
145
N
N
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
N
C
Y
191
N
C
Y
192
N
N
Y
193
N
C
Y
194
N
C
Y
195
N
N
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
S
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
S
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
R
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
N
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
N
426
N
C
N
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
S
N
441
N
S
N
442
N
C
N
443
N
O
N
444
N
O
N
445
N
C
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
Y
72
N
doub
Y
73
N
sing
N
74
N
sing
Y
75
N
doub
N
76
N
sing
Y
77
N
doub
Y
78
N
sing
N
79
N
sing
Y
80
N
doub
N
81
N
sing
Y
82
N
sing
N
83
N
sing
Y
84
N
sing
N
85
N
sing
Y
86
N
sing
N
87
N
sing
Y
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
Y
101
N
sing
Y
102
N
sing
N
103
N
sing
N
104
N
sing
Y
105
N
doub
Y
106
N
sing
N
107
N
sing
Y
108
N
doub
Y
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
Y
190
N
sing
Y
191
N
doub
Y
192
N
doub
N
193
N
sing
Y
194
N
sing
N
195
N
sing
Y
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
doub
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
53
4891
4905
10.1021/jm100488w
20540517
Complementarity between a docking and a high-throughput screen in discovering new cruzain inhibitors.
2010
10.2210/pdb3kku/pdb
pdb_00003kku
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
ADSC QUANTUM 315r
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
8.3.1
ALS
1.0
SYNCHROTRON
ALS BEAMLINE 8.3.1
22715.133
Cruzipain
3.4.22.51
1
man
polymer
374.232
N-[2-(1H-benzimidazol-2-yl)ethyl]-2-(2-bromophenoxy)acetamide
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
10
syn
non-polymer
126.198
S-methyl methanesulfonothioate
1
syn
non-polymer
18.015
water
310
nat
water
Cruzaine, Major cysteine proteinase
no
no
APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENN
GAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQL
DHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVVG
APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENN
GAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQL
DHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVVG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
5693
Trypanosoma cruzi
562
Escherichia coli
1
2.23
44.73
VAPOR DIFFUSION, HANGING DROP
8.5
0.1 M Tris pH 8.5, 2.0 M NH4H2PO4, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_unobs_or_zero_occ_atoms
struct_conn
struct_site
repository
Initial release
Version format compliance
Advisory
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-07-07
1
1
2011-07-13
1
2
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2009-11-06
REL
REL
B95
N-[2-(1H-benzimidazol-2-yl)ethyl]-2-(2-bromophenoxy)acetamide
EDO
1,2-ETHANEDIOL
Z22
S-methyl methanesulfonothioate
HOH
water
3I06
PDB
experimental model
B95
216
2
B95
B95
216
A
EDO
401
3
EDO
EDO
401
A
EDO
402
3
EDO
EDO
402
A
EDO
403
3
EDO
EDO
403
A
EDO
404
3
EDO
EDO
404
A
EDO
405
3
EDO
EDO
405
A
EDO
406
3
EDO
EDO
406
A
EDO
407
3
EDO
EDO
407
A
EDO
408
3
EDO
EDO
408
A
EDO
409
3
EDO
EDO
409
A
EDO
410
3
EDO
EDO
410
A
Z22
217
4
Z22
Z22
217
A
HOH
218
5
HOH
HOH
218
A
HOH
219
5
HOH
HOH
219
A
HOH
220
5
HOH
HOH
220
A
HOH
221
5
HOH
HOH
221
A
HOH
222
5
HOH
HOH
222
A
HOH
223
5
HOH
HOH
223
A
HOH
224
5
HOH
HOH
224
A
HOH
225
5
HOH
HOH
225
A
HOH
226
5
HOH
HOH
226
A
HOH
227
5
HOH
HOH
227
A
HOH
228
5
HOH
HOH
228
A
HOH
229
5
HOH
HOH
229
A
HOH
230
5
HOH
HOH
230
A
HOH
231
5
HOH
HOH
231
A
HOH
232
5
HOH
HOH
232
A
HOH
233
5
HOH
HOH
233
A
HOH
234
5
HOH
HOH
234
A
HOH
235
5
HOH
HOH
235
A
HOH
236
5
HOH
HOH
236
A
HOH
237
5
HOH
HOH
237
A
HOH
238
5
HOH
HOH
238
A
HOH
239
5
HOH
HOH
239
A
HOH
240
5
HOH
HOH
240
A
HOH
241
5
HOH
HOH
241
A
HOH
242
5
HOH
HOH
242
A
HOH
243
5
HOH
HOH
243
A
HOH
244
5
HOH
HOH
244
A
HOH
245
5
HOH
HOH
245
A
HOH
246
5
HOH
HOH
246
A
HOH
247
5
HOH
HOH
247
A
HOH
248
5
HOH
HOH
248
A
HOH
249
5
HOH
HOH
249
A
HOH
250
5
HOH
HOH
250
A
HOH
251
5
HOH
HOH
251
A
HOH
252
5
HOH
HOH
252
A
HOH
253
5
HOH
HOH
253
A
HOH
254
5
HOH
HOH
254
A
HOH
255
5
HOH
HOH
255
A
HOH
256
5
HOH
HOH
256
A
HOH
257
5
HOH
HOH
257
A
HOH
258
5
HOH
HOH
258
A
HOH
259
5
HOH
HOH
259
A
HOH
260
5
HOH
HOH
260
A
HOH
261
5
HOH
HOH
261
A
HOH
262
5
HOH
HOH
262
A
HOH
263
5
HOH
HOH
263
A
HOH
264
5
HOH
HOH
264
A
HOH
265
5
HOH
HOH
265
A
HOH
266
5
HOH
HOH
266
A
HOH
267
5
HOH
HOH
267
A
HOH
268
5
HOH
HOH
268
A
HOH
269
5
HOH
HOH
269
A
HOH
270
5
HOH
HOH
270
A
HOH
271
5
HOH
HOH
271
A
HOH
272
5
HOH
HOH
272
A
HOH
273
5
HOH
HOH
273
A
HOH
274
5
HOH
HOH
274
A
HOH
275
5
HOH
HOH
275
A
HOH
276
5
HOH
HOH
276
A
HOH
277
5
HOH
HOH
277
A
HOH
278
5
HOH
HOH
278
A
HOH
279
5
HOH
HOH
279
A
HOH
280
5
HOH
HOH
280
A
HOH
281
5
HOH
HOH
281
A
HOH
282
5
HOH
HOH
282
A
HOH
283
5
HOH
HOH
283
A
HOH
284
5
HOH
HOH
284
A
HOH
285
5
HOH
HOH
285
A
HOH
286
5
HOH
HOH
286
A
HOH
287
5
HOH
HOH
287
A
HOH
288
5
HOH
HOH
288
A
HOH
289
5
HOH
HOH
289
A
HOH
290
5
HOH
HOH
290
A
HOH
291
5
HOH
HOH
291
A
HOH
292
5
HOH
HOH
292
A
HOH
293
5
HOH
HOH
293
A
HOH
294
5
HOH
HOH
294
A
HOH
295
5
HOH
HOH
295
A
HOH
296
5
HOH
HOH
296
A
HOH
297
5
HOH
HOH
297
A
HOH
298
5
HOH
HOH
298
A
HOH
299
5
HOH
HOH
299
A
HOH
300
5
HOH
HOH
300
A
HOH
301
5
HOH
HOH
301
A
HOH
302
5
HOH
HOH
302
A
HOH
303
5
HOH
HOH
303
A
HOH
304
5
HOH
HOH
304
A
HOH
305
5
HOH
HOH
305
A
HOH
306
5
HOH
HOH
306
A
HOH
307
5
HOH
HOH
307
A
HOH
308
5
HOH
HOH
308
A
HOH
309
5
HOH
HOH
309
A
HOH
310
5
HOH
HOH
310
A
HOH
311
5
HOH
HOH
311
A
HOH
312
5
HOH
HOH
312
A
HOH
313
5
HOH
HOH
313
A
HOH
314
5
HOH
HOH
314
A
HOH
315
5
HOH
HOH
315
A
HOH
316
5
HOH
HOH
316
A
HOH
317
5
HOH
HOH
317
A
HOH
318
5
HOH
HOH
318
A
HOH
319
5
HOH
HOH
319
A
HOH
320
5
HOH
HOH
320
A
HOH
321
5
HOH
HOH
321
A
HOH
322
5
HOH
HOH
322
A
HOH
323
5
HOH
HOH
323
A
HOH
324
5
HOH
HOH
324
A
HOH
325
5
HOH
HOH
325
A
HOH
326
5
HOH
HOH
326
A
HOH
327
5
HOH
HOH
327
A
HOH
328
5
HOH
HOH
328
A
HOH
329
5
HOH
HOH
329
A
HOH
330
5
HOH
HOH
330
A
HOH
331
5
HOH
HOH
331
A
HOH
332
5
HOH
HOH
332
A
HOH
333
5
HOH
HOH
333
A
HOH
334
5
HOH
HOH
334
A
HOH
335
5
HOH
HOH
335
A
HOH
336
5
HOH
HOH
336
A
HOH
337
5
HOH
HOH
337
A
HOH
338
5
HOH
HOH
338
A
HOH
339
5
HOH
HOH
339
A
HOH
340
5
HOH
HOH
340
A
HOH
341
5
HOH
HOH
341
A
HOH
342
5
HOH
HOH
342
A
HOH
343
5
HOH
HOH
343
A
HOH
344
5
HOH
HOH
344
A
HOH
345
5
HOH
HOH
345
A
HOH
346
5
HOH
HOH
346
A
HOH
347
5
HOH
HOH
347
A
HOH
348
5
HOH
HOH
348
A
HOH
349
5
HOH
HOH
349
A
HOH
350
5
HOH
HOH
350
A
HOH
351
5
HOH
HOH
351
A
HOH
352
5
HOH
HOH
352
A
HOH
353
5
HOH
HOH
353
A
HOH
354
5
HOH
HOH
354
A
HOH
355
5
HOH
HOH
355
A
HOH
356
5
HOH
HOH
356
A
HOH
357
5
HOH
HOH
357
A
HOH
358
5
HOH
HOH
358
A
HOH
359
5
HOH
HOH
359
A
HOH
360
5
HOH
HOH
360
A
HOH
361
5
HOH
HOH
361
A
HOH
362
5
HOH
HOH
362
A
HOH
363
5
HOH
HOH
363
A
HOH
364
5
HOH
HOH
364
A
HOH
365
5
HOH
HOH
365
A
HOH
366
5
HOH
HOH
366
A
HOH
367
5
HOH
HOH
367
A
HOH
368
5
HOH
HOH
368
A
HOH
369
5
HOH
HOH
369
A
HOH
370
5
HOH
HOH
370
A
HOH
371
5
HOH
HOH
371
A
HOH
372
5
HOH
HOH
372
A
HOH
373
5
HOH
HOH
373
A
HOH
374
5
HOH
HOH
374
A
HOH
375
5
HOH
HOH
375
A
HOH
376
5
HOH
HOH
376
A
HOH
377
5
HOH
HOH
377
A
HOH
378
5
HOH
HOH
378
A
HOH
379
5
HOH
HOH
379
A
HOH
380
5
HOH
HOH
380
A
HOH
381
5
HOH
HOH
381
A
HOH
382
5
HOH
HOH
382
A
HOH
383
5
HOH
HOH
383
A
HOH
384
5
HOH
HOH
384
A
HOH
385
5
HOH
HOH
385
A
HOH
386
5
HOH
HOH
386
A
HOH
387
5
HOH
HOH
387
A
HOH
388
5
HOH
HOH
388
A
HOH
389
5
HOH
HOH
389
A
HOH
390
5
HOH
HOH
390
A
HOH
391
5
HOH
HOH
391
A
HOH
392
5
HOH
HOH
392
A
HOH
393
5
HOH
HOH
393
A
HOH
394
5
HOH
HOH
394
A
HOH
395
5
HOH
HOH
395
A
HOH
396
5
HOH
HOH
396
A
HOH
397
5
HOH
HOH
397
A
HOH
398
5
HOH
HOH
398
A
HOH
399
5
HOH
HOH
399
A
HOH
400
5
HOH
HOH
400
A
HOH
411
5
HOH
HOH
411
A
HOH
412
5
HOH
HOH
412
A
HOH
413
5
HOH
HOH
413
A
HOH
414
5
HOH
HOH
414
A
HOH
415
5
HOH
HOH
415
A
HOH
416
5
HOH
HOH
416
A
HOH
417
5
HOH
HOH
417
A
HOH
418
5
HOH
HOH
418
A
HOH
419
5
HOH
HOH
419
A
HOH
420
5
HOH
HOH
420
A
HOH
421
5
HOH
HOH
421
A
HOH
422
5
HOH
HOH
422
A
HOH
423
5
HOH
HOH
423
A
HOH
424
5
HOH
HOH
424
A
HOH
425
5
HOH
HOH
425
A
HOH
426
5
HOH
HOH
426
A
HOH
427
5
HOH
HOH
427
A
HOH
428
5
HOH
HOH
428
A
HOH
429
5
HOH
HOH
429
A
HOH
430
5
HOH
HOH
430
A
HOH
431
5
HOH
HOH
431
A
HOH
432
5
HOH
HOH
432
A
HOH
433
5
HOH
HOH
433
A
HOH
434
5
HOH
HOH
434
A
HOH
435
5
HOH
HOH
435
A
HOH
436
5
HOH
HOH
436
A
HOH
437
5
HOH
HOH
437
A
HOH
438
5
HOH
HOH
438
A
HOH
439
5
HOH
HOH
439
A
HOH
440
5
HOH
HOH
440
A
HOH
441
5
HOH
HOH
441
A
HOH
442
5
HOH
HOH
442
A
HOH
443
5
HOH
HOH
443
A
HOH
444
5
HOH
HOH
444
A
HOH
445
5
HOH
HOH
445
A
HOH
446
5
HOH
HOH
446
A
HOH
447
5
HOH
HOH
447
A
HOH
448
5
HOH
HOH
448
A
HOH
449
5
HOH
HOH
449
A
HOH
450
5
HOH
HOH
450
A
HOH
451
5
HOH
HOH
451
A
HOH
452
5
HOH
HOH
452
A
HOH
453
5
HOH
HOH
453
A
HOH
454
5
HOH
HOH
454
A
HOH
455
5
HOH
HOH
455
A
HOH
456
5
HOH
HOH
456
A
HOH
457
5
HOH
HOH
457
A
HOH
458
5
HOH
HOH
458
A
HOH
459
5
HOH
HOH
459
A
HOH
460
5
HOH
HOH
460
A
HOH
461
5
HOH
HOH
461
A
HOH
462
5
HOH
HOH
462
A
HOH
463
5
HOH
HOH
463
A
HOH
464
5
HOH
HOH
464
A
HOH
465
5
HOH
HOH
465
A
HOH
466
5
HOH
HOH
466
A
HOH
467
5
HOH
HOH
467
A
HOH
468
5
HOH
HOH
468
A
HOH
469
5
HOH
HOH
469
A
HOH
470
5
HOH
HOH
470
A
HOH
471
5
HOH
HOH
471
A
HOH
472
5
HOH
HOH
472
A
HOH
473
5
HOH
HOH
473
A
HOH
474
5
HOH
HOH
474
A
HOH
475
5
HOH
HOH
475
A
HOH
476
5
HOH
HOH
476
A
HOH
477
5
HOH
HOH
477
A
HOH
478
5
HOH
HOH
478
A
HOH
479
5
HOH
HOH
479
A
HOH
480
5
HOH
HOH
480
A
HOH
481
5
HOH
HOH
481
A
HOH
482
5
HOH
HOH
482
A
HOH
483
5
HOH
HOH
483
A
HOH
484
5
HOH
HOH
484
A
HOH
485
5
HOH
HOH
485
A
HOH
486
5
HOH
HOH
486
A
HOH
487
5
HOH
HOH
487
A
HOH
488
5
HOH
HOH
488
A
HOH
489
5
HOH
HOH
489
A
HOH
490
5
HOH
HOH
490
A
HOH
491
5
HOH
HOH
491
A
HOH
492
5
HOH
HOH
492
A
HOH
493
5
HOH
HOH
493
A
HOH
494
5
HOH
HOH
494
A
HOH
495
5
HOH
HOH
495
A
HOH
496
5
HOH
HOH
496
A
HOH
497
5
HOH
HOH
497
A
HOH
498
5
HOH
HOH
498
A
HOH
499
5
HOH
HOH
499
A
HOH
500
5
HOH
HOH
500
A
HOH
501
5
HOH
HOH
501
A
HOH
502
5
HOH
HOH
502
A
HOH
503
5
HOH
HOH
503
A
HOH
504
5
HOH
HOH
504
A
HOH
505
5
HOH
HOH
505
A
HOH
506
5
HOH
HOH
506
A
HOH
507
5
HOH
HOH
507
A
HOH
508
5
HOH
HOH
508
A
HOH
509
5
HOH
HOH
509
A
HOH
510
5
HOH
HOH
510
A
HOH
511
5
HOH
HOH
511
A
HOH
512
5
HOH
HOH
512
A
HOH
513
5
HOH
HOH
513
A
HOH
514
5
HOH
HOH
514
A
HOH
515
5
HOH
HOH
515
A
HOH
516
5
HOH
HOH
516
A
HOH
517
5
HOH
HOH
517
A
HOH
518
5
HOH
HOH
518
A
HOH
519
5
HOH
HOH
519
A
HOH
520
5
HOH
HOH
520
A
HOH
521
5
HOH
HOH
521
A
HOH
522
5
HOH
HOH
522
A
HOH
523
5
HOH
HOH
523
A
HOH
524
5
HOH
HOH
524
A
HOH
525
5
HOH
HOH
525
A
HOH
526
5
HOH
HOH
526
A
HOH
527
5
HOH
HOH
527
A
HOH
528
5
HOH
HOH
528
A
HOH
529
5
HOH
HOH
529
A
HOH
530
5
HOH
HOH
530
A
HOH
531
5
HOH
HOH
531
A
HOH
532
5
HOH
HOH
532
A
HOH
533
5
HOH
HOH
533
A
HOH
534
5
HOH
HOH
534
A
HOH
535
5
HOH
HOH
535
A
HOH
536
5
HOH
HOH
536
A
HOH
537
5
HOH
HOH
537
A
ALA
1
n
1
ALA
1
A
PRO
2
n
2
PRO
2
A
ALA
3
n
3
ALA
3
A
ALA
4
n
4
ALA
4
A
VAL
5
n
5
VAL
5
A
ASP
6
n
6
ASP
6
A
TRP
7
n
7
TRP
7
A
ARG
8
n
8
ARG
8
A
ALA
9
n
9
ALA
9
A
ARG
10
n
10
ARG
10
A
GLY
11
n
11
GLY
11
A
ALA
12
n
12
ALA
12
A
VAL
13
n
13
VAL
13
A
THR
14
n
14
THR
14
A
ALA
15
n
15
ALA
15
A
VAL
16
n
16
VAL
16
A
LYS
17
n
17
LYS
17
A
ASP
18
n
18
ASP
18
A
GLN
19
n
19
GLN
19
A
GLY
20
n
20
GLY
20
A
GLN
21
n
21
GLN
21
A
CYS
22
n
22
CYS
22
A
GLY
23
n
23
GLY
23
A
SER
24
n
24
SER
24
A
CYS
25
n
25
CYS
25
A
TRP
26
n
26
TRP
26
A
ALA
27
n
27
ALA
27
A
PHE
28
n
28
PHE
28
A
SER
29
n
29
SER
29
A
ALA
30
n
30
ALA
30
A
ILE
31
n
31
ILE
31
A
GLY
32
n
32
GLY
32
A
ASN
33
n
33
ASN
33
A
VAL
34
n
34
VAL
34
A
GLU
35
n
35
GLU
35
A
CYS
36
n
36
CYS
36
A
GLN
37
n
37
GLN
37
A
TRP
38
n
38
TRP
38
A
PHE
39
n
39
PHE
39
A
LEU
40
n
40
LEU
40
A
ALA
41
n
41
ALA
41
A
GLY
42
n
42
GLY
42
A
HIS
43
n
43
HIS
43
A
PRO
44
n
44
PRO
44
A
LEU
45
n
45
LEU
45
A
THR
46
n
46
THR
46
A
ASN
47
n
47
ASN
47
A
LEU
48
n
48
LEU
48
A
SER
49
n
49
SER
49
A
GLU
50
n
50
GLU
50
A
GLN
51
n
51
GLN
51
A
MET
52
n
52
MET
52
A
LEU
53
n
53
LEU
53
A
VAL
54
n
54
VAL
54
A
SER
55
n
55
SER
55
A
CYS
56
n
56
CYS
56
A
ASP
57
n
57
ASP
57
A
LYS
58
n
58
LYS
58
A
THR
59
n
59
THR
59
A
ASP
60
n
60
ASP
60
A
SER
61
n
61
SER
61
A
GLY
62
n
62
GLY
62
A
CYS
63
n
63
CYS
63
A
SER
64
n
64
SER
64
A
GLY
65
n
65
GLY
65
A
GLY
66
n
66
GLY
66
A
LEU
67
n
67
LEU
67
A
MET
68
n
68
MET
68
A
ASN
69
n
69
ASN
69
A
ASN
70
n
70
ASN
70
A
ALA
71
n
71
ALA
71
A
PHE
72
n
72
PHE
72
A
GLU
73
n
73
GLU
73
A
TRP
74
n
74
TRP
74
A
ILE
75
n
75
ILE
75
A
VAL
76
n
76
VAL
76
A
GLN
77
n
77
GLN
77
A
GLU
78
n
78
GLU
78
A
ASN
79
n
79
ASN
79
A
ASN
80
n
80
ASN
80
A
GLY
81
n
81
GLY
81
A
ALA
82
n
82
ALA
82
A
VAL
83
n
83
VAL
83
A
TYR
84
n
84
TYR
84
A
THR
85
n
85
THR
85
A
GLU
86
n
86
GLU
86
A
ASP
87
n
87
ASP
87
A
SER
88
n
88
SER
88
A
TYR
89
n
89
TYR
89
A
PRO
90
n
90
PRO
90
A
TYR
91
n
91
TYR
91
A
ALA
92
n
92
ALA
92
A
SER
93
n
93
SER
93
A
GLY
94
n
94
GLY
94
A
GLU
95
n
95
GLU
95
A
GLY
96
n
96
GLY
96
A
ILE
97
n
97
ILE
97
A
SER
98
n
98
SER
98
A
PRO
99
n
99
PRO
99
A
PRO
100
n
100
PRO
100
A
CYS
101
n
101
CYS
101
A
THR
102
n
102
THR
102
A
THR
103
n
103
THR
103
A
SER
104
n
104
SER
104
A
GLY
105
n
105
GLY
105
A
HIS
106
n
106
HIS
106
A
THR
107
n
107
THR
107
A
VAL
108
n
108
VAL
108
A
GLY
109
n
109
GLY
109
A
ALA
110
n
110
ALA
110
A
THR
111
n
111
THR
111
A
ILE
112
n
112
ILE
112
A
THR
113
n
113
THR
113
A
GLY
114
n
114
GLY
114
A
HIS
115
n
115
HIS
115
A
VAL
116
n
116
VAL
116
A
GLU
117
n
117
GLU
117
A
LEU
118
n
118
LEU
118
A
PRO
119
n
119
PRO
119
A
GLN
120
n
120
GLN
120
A
ASP
121
n
121
ASP
121
A
GLU
122
n
122
GLU
122
A
ALA
123
n
123
ALA
123
A
GLN
124
n
124
GLN
124
A
ILE
125
n
125
ILE
125
A
ALA
126
n
126
ALA
126
A
ALA
127
n
127
ALA
127
A
TRP
128
n
128
TRP
128
A
LEU
129
n
129
LEU
129
A
ALA
130
n
130
ALA
130
A
VAL
131
n
131
VAL
131
A
ASN
132
n
132
ASN
132
A
GLY
133
n
133
GLY
133
A
PRO
134
n
134
PRO
134
A
VAL
135
n
135
VAL
135
A
ALA
136
n
136
ALA
136
A
VAL
137
n
137
VAL
137
A
ALA
138
n
138
ALA
138
A
VAL
139
n
139
VAL
139
A
ASP
140
n
140
ASP
140
A
ALA
141
n
141
ALA
141
A
SER
142
n
142
SER
142
A
SER
143
n
143
SER
143
A
TRP
144
n
144
TRP
144
A
MET
145
n
145
MET
145
A
THR
146
n
146
THR
146
A
TYR
147
n
147
TYR
147
A
THR
148
n
148
THR
148
A
GLY
149
n
149
GLY
149
A
GLY
150
n
150
GLY
150
A
VAL
151
n
151
VAL
151
A
MET
152
n
152
MET
152
A
THR
153
n
153
THR
153
A
SER
154
n
154
SER
154
A
CYS
155
n
155
CYS
155
A
VAL
156
n
156
VAL
156
A
SER
157
n
157
SER
157
A
GLU
158
n
158
GLU
158
A
GLN
159
n
159
GLN
159
A
LEU
160
n
160
LEU
160
A
ASP
161
n
161
ASP
161
A
HIS
162
n
162
HIS
162
A
GLY
163
n
163
GLY
163
A
VAL
164
n
164
VAL
164
A
LEU
165
n
165
LEU
165
A
LEU
166
n
166
LEU
166
A
VAL
167
n
167
VAL
167
A
GLY
168
n
168
GLY
168
A
TYR
169
n
169
TYR
169
A
ASN
170
n
170
ASN
170
A
ASP
171
n
171
ASP
171
A
SER
172
n
172
SER
172
A
ALA
173
n
173
ALA
173
A
ALA
174
n
174
ALA
174
A
VAL
175
n
175
VAL
175
A
PRO
176
n
176
PRO
176
A
TYR
177
n
177
TYR
177
A
TRP
178
n
178
TRP
178
A
ILE
179
n
179
ILE
179
A
ILE
180
n
180
ILE
180
A
LYS
181
n
181
LYS
181
A
ASN
182
n
182
ASN
182
A
SER
183
n
183
SER
183
A
TRP
184
n
184
TRP
184
A
THR
185
n
185
THR
185
A
THR
186
n
186
THR
186
A
GLN
187
n
187
GLN
187
A
TRP
188
n
188
TRP
188
A
GLY
189
n
189
GLY
189
A
GLU
190
n
190
GLU
190
A
GLU
191
n
191
GLU
191
A
GLY
192
n
192
GLY
192
A
TYR
193
n
193
TYR
193
A
ILE
194
n
194
ILE
194
A
ARG
195
n
195
ARG
195
A
ILE
196
n
196
ILE
196
A
ALA
197
n
197
ALA
197
A
LYS
198
n
198
LYS
198
A
GLY
199
n
199
GLY
199
A
SER
200
n
200
SER
200
A
ASN
201
n
201
ASN
201
A
GLN
202
n
202
GLN
202
A
CYS
203
n
203
CYS
203
A
LEU
204
n
204
LEU
204
A
VAL
205
n
205
VAL
205
A
LYS
206
n
206
LYS
206
A
GLU
207
n
207
GLU
207
A
GLU
208
n
208
GLU
208
A
ALA
209
n
209
ALA
209
A
SER
210
n
210
SER
210
A
SER
211
n
211
SER
211
A
ALA
212
n
212
ALA
212
A
VAL
213
n
213
VAL
213
A
VAL
214
n
214
VAL
214
A
GLY
215
n
215
GLY
215
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
5
A
N
VAL
5
A
O
TYR
169
A
O
TYR
169
A
O
LEU
166
A
O
LEU
166
A
N
VAL
135
A
N
VAL
135
A
N
ALA
136
A
N
ALA
136
A
O
SER
210
A
O
SER
210
A
O
SER
211
A
O
SER
211
A
N
VAL
116
A
N
VAL
116
A
O
GLY
109
A
O
GLY
109
A
N
VAL
83
A
N
VAL
83
A
N
VAL
5
A
N
VAL
5
A
O
TYR
169
A
O
TYR
169
A
N
LEU
165
A
N
LEU
165
A
O
LYS
181
A
O
LYS
181
A
N
TRP
178
A
N
TRP
178
A
O
ILE
196
A
O
ILE
196
A
O
ALA
197
A
O
ALA
197
A
N
MET
152
A
N
MET
152
1
A
HOH
266
N
HOH
1
A
HOH
278
N
HOH
1
A
HOH
372
N
HOH
1
A
HOH
422
N
HOH
1
A
HOH
537
N
HOH
1
A
ASP
161
-151.25
-0.44
1
A
THR
185
71.01
168.53
0.1440
0.1147
0.1162
1.280
30.668
2725
53676
5.08
53.11
0.30
1
1.91
MOLECULAR REPLACEMENT
0.90
1.11
3I06
ML
FLAT BULK SOLVENT MODEL
61.849
0.368
1.280
30.668
310
1967
65
0
1592
0.013
1771
1.491
2417
19.089
614
0.096
261
0.009
314
0.1316
0.0777
1.3030
143
2610
52.00
0.1300
0.0810
1.3281
141
2644
52.00
0.1348
0.0762
1.3552
129
2660
52.00
0.1165
0.0784
1.3847
129
2644
52.00
0.1298
0.0820
1.4169
155
2622
52.00
0.1248
0.0895
1.4523
156
2648
52.00
0.1351
0.0842
1.4916
129
2644
52.00
0.1266
0.0837
1.5354
133
2659
53.00
0.1298
0.0862
1.5850
159
2623
53.00
0.1227
0.0910
1.6417
136
2676
53.00
0.1182
0.0986
1.7074
150
2656
53.00
0.1373
0.1004
1.7851
138
2668
53.00
0.1316
0.0979
1.8792
144
2686
53.00
0.1268
0.0978
1.9969
154
2686
53.00
0.1347
0.1052
2.1510
141
2697
53.00
0.1431
0.1112
2.3674
141
2700
54.00
0.1671
0.1318
2.7098
142
2748
54.00
0.1486
0.1322
3.4134
158
2766
55.00
0.1527
0.1368
30.6766
147
2914
57.00
7.93
1.28
50
3KKU
59354
0.092
1
78
11.5
99.9
0.186
1.28
1.33
29.3
5282
11
100
phasing
PHASER
refinement
PHENIX
(phenix.refine)
data reduction
MOSFLM
data scaling
HKL-2000
Cruzain in complex with a non-covalent ligand
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
A
ARG
8
A
ARG
8
HELX_P
A
GLY
11
A
GLY
11
5
1
4
A
SER
24
A
SER
24
HELX_P
A
ALA
41
A
ALA
41
1
2
18
A
SER
49
A
SER
49
HELX_P
A
ASP
57
A
ASP
57
1
3
9
A
SER
61
A
SER
61
HELX_P
A
GLY
65
A
GLY
65
5
4
5
A
LEU
67
A
LEU
67
HELX_P
A
ASN
79
A
ASN
79
1
5
13
A
ASP
121
A
ASP
121
HELX_P
A
GLY
133
A
GLY
133
1
6
13
A
ASN
201
A
ASN
201
HELX_P
A
VAL
205
A
VAL
205
5
7
5
disulf
2.042
A
CYS
22
A
SG
CYS
22
1_555
A
CYS
63
A
SG
CYS
63
1_555
disulf
2.082
A
CYS
56
A
SG
CYS
56
1_555
A
CYS
101
A
SG
CYS
101
1_555
disulf
2.073
A
CYS
155
A
SG
CYS
155
1_555
A
CYS
203
A
SG
CYS
203
1_555
covale
2.022
one
B
A
CYS
25
A
SG
CYS
25
1_555
A
Z22
217
M
S
Z22
1_555
HYDROLASE
Autocatalytic cleavage, Glycoprotein, Protease, Thiol protease, Zymogen, HYDROLASE
CYSP_TRYCR
UNP
1
123
P25779
APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENN
GAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQL
DHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVVG
123
337
3KKU
1
215
P25779
A
1
1
215
6
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
ALA
4
A
ALA
4
A
ASP
6
A
ASP
6
A
HIS
162
A
HIS
162
A
ASN
170
A
ASN
170
A
VAL
135
A
VAL
135
A
VAL
139
A
VAL
139
A
ALA
209
A
ALA
209
A
VAL
214
A
VAL
214
A
VAL
108
A
VAL
108
A
GLU
117
A
GLU
117
A
ALA
82
A
ALA
82
A
TYR
84
A
TYR
84
A
ALA
4
A
ALA
4
A
ASP
6
A
ASP
6
A
HIS
162
A
HIS
162
A
ASN
170
A
ASN
170
A
TYR
177
A
TYR
177
A
LYS
181
A
LYS
181
A
TYR
193
A
TYR
193
A
ALA
197
A
ALA
197
A
VAL
151
A
VAL
151
A
MET
152
A
MET
152
BINDING SITE FOR RESIDUE B95 A 216
A
B95
216
Software
15
BINDING SITE FOR RESIDUE EDO A 401
A
EDO
401
Software
7
BINDING SITE FOR RESIDUE EDO A 402
A
EDO
402
Software
6
BINDING SITE FOR RESIDUE EDO A 403
A
EDO
403
Software
7
BINDING SITE FOR RESIDUE EDO A 404
A
EDO
404
Software
5
BINDING SITE FOR RESIDUE EDO A 405
A
EDO
405
Software
7
BINDING SITE FOR RESIDUE EDO A 406
A
EDO
406
Software
5
BINDING SITE FOR RESIDUE EDO A 407
A
EDO
407
Software
8
BINDING SITE FOR RESIDUE EDO A 408
A
EDO
408
Software
3
BINDING SITE FOR RESIDUE EDO A 409
A
EDO
409
Software
6
BINDING SITE FOR RESIDUE EDO A 410
A
EDO
410
Software
6
BINDING SITE FOR RESIDUE Z22 A 217
A
Z22
217
Software
7
A
GLY
23
A
GLY
23
15
1_555
A
CYS
25
A
CYS
25
15
1_555
A
TRP
26
A
TRP
26
15
1_555
A
GLY
65
A
GLY
65
15
1_555
A
GLY
66
A
GLY
66
15
1_555
A
LEU
67
A
LEU
67
15
1_555
A
MET
68
A
MET
68
15
1_555
A
ALA
138
A
ALA
138
15
1_555
A
GLN
159
A
GLN
159
15
1_555
A
LEU
160
A
LEU
160
15
1_555
A
ASP
161
A
ASP
161
15
1_555
A
HIS
162
A
HIS
162
15
1_555
A
GLY
163
A
GLY
163
15
1_555
A
Z22
217
M
Z22
15
1_555
A
HOH
531
N
HOH
15
1_555
A
ARG
8
A
ARG
8
7
1_555
A
VAL
13
A
VAL
13
7
1_555
A
THR
14
A
THR
14
7
1_555
A
TYR
193
A
TYR
193
7
1_555
A
HOH
232
N
HOH
7
1_555
A
HOH
297
N
HOH
7
1_555
A
HOH
505
N
HOH
7
6_554
A
THR
186
A
THR
186
6
1_555
A
GLN
187
A
GLN
187
6
1_555
A
TRP
188
A
TRP
188
6
1_555
A
GLY
189
A
GLY
189
6
1_555
A
GLU
191
A
GLU
191
6
1_555
A
HOH
319
N
HOH
6
1_555
A
ASP
121
A
ASP
121
7
1_555
A
GLU
122
A
GLU
122
7
1_555
A
ASN
201
A
ASN
201
7
1_555
A
LYS
206
A
LYS
206
7
1_555
A
HOH
229
N
HOH
7
1_555
A
EDO
407
I
EDO
7
1_555
A
HOH
519
N
HOH
7
1_555
A
LYS
17
A
LYS
17
5
1_555
A
ASP
18
A
ASP
18
5
1_555
A
GLU
86
A
GLU
86
5
1_555
A
TYR
91
A
TYR
91
5
1_555
A
HOH
225
N
HOH
5
1_555
A
ASN
79
A
ASN
79
7
1_555
A
ASN
80
A
ASN
80
7
1_555
A
ASN
80
A
ASN
80
7
11_554
A
ALA
82
A
ALA
82
7
1_555
A
TYR
84
A
TYR
84
7
1_555
A
HOH
422
N
HOH
7
11_554
A
HOH
422
N
HOH
7
1_555
A
THR
59
A
THR
59
5
1_555
A
ASN
70
A
ASN
70
5
12_544
A
TRP
74
A
TRP
74
5
1_555
A
GLN
77
A
GLN
77
5
1_555
A
HOH
353
N
HOH
5
1_555
A
GLU
122
A
GLU
122
8
1_555
A
LYS
198
A
LYS
198
8
1_555
A
GLY
199
A
GLY
199
8
1_555
A
HOH
229
N
HOH
8
1_555
A
HOH
340
N
HOH
8
1_555
A
EDO
403
E
EDO
8
1_555
A
HOH
489
N
HOH
8
1_555
A
HOH
518
N
HOH
8
1_555
A
TRP
128
A
TRP
128
3
1_555
A
ASN
132
A
ASN
132
3
1_555
A
HOH
428
N
HOH
3
1_555
A
HIS
43
A
HIS
43
6
11_554
A
PRO
44
A
PRO
44
6
11_554
A
THR
85
A
THR
85
6
1_555
A
THR
107
A
THR
107
6
1_555
A
HOH
421
N
HOH
6
11_554
A
HOH
447
N
HOH
6
11_554
A
THR
14
A
THR
14
6
1_555
A
ALA
15
A
ALA
15
6
1_555
A
LYS
17
A
LYS
17
6
1_555
A
LEU
45
A
LEU
45
6
1_555
A
ASN
47
A
ASN
47
6
1_555
A
HOH
429
N
HOH
6
1_555
A
GLN
19
A
GLN
19
7
1_555
A
CYS
25
A
CYS
25
7
1_555
A
HIS
162
A
HIS
162
7
1_555
A
B95
216
B
B95
7
1_555
A
HOH
273
N
HOH
7
1_555
A
HOH
341
N
HOH
7
1_555
A
HOH
342
N
HOH
7
1_555
179
P 65 2 2