data_3KNC # _entry.id 3KNC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KNC pdb_00003knc 10.2210/pdb3knc/pdb NDB NA0360 ? ? RCSB RCSB056206 ? ? WWPDB D_1000056206 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-02-01 4 'Structure model' 1 3 2017-11-01 5 'Structure model' 1 4 2021-10-13 6 'Structure model' 1 5 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Other 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' 6 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' pdbx_struct_conn_angle 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site 8 6 'Structure model' chem_comp_atom 9 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.value' 7 5 'Structure model' '_struct_conn.pdbx_dist_value' 8 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 10 5 'Structure model' '_struct_ref_seq.db_align_beg' 11 5 'Structure model' '_struct_ref_seq.db_align_end' 12 5 'Structure model' '_struct_ref_seq_dif.details' 13 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 14 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 15 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3KNC _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-11-12 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ovaere, M.' 1 'Van Meervelt, L.' 2 # _citation.id primary _citation.title 'The Crystal Structure of the CeNA:RNA Hybrid ce(GCGTAGCG):r(CGCUACGC).' _citation.journal_abbrev Chemistry _citation.journal_volume 17 _citation.page_first 7823 _citation.page_last 7830 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 0947-6539 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21618623 _citation.pdbx_database_id_DOI 10.1002/chem.201003594 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ovaere, M.' 1 ? primary 'Herdewijn, P.' 2 ? primary 'Van Meervelt, L.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*(XGR)P*(XCR)P*(XGR)P*(XTR)P*(XAR)P*(XGR)P*(XCR)P*(XGR)P*(XGR))-3'" 2887.177 1 ? ? ? CeNA 2 polymer syn "5'-R(*CP*GP*CP*UP*AP*CP*GP*C)-3'" 2501.553 1 ? ? ? RNA 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 water nat water 18.015 47 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(XGR)(XCR)(XGR)(XTR)(XAR)(XGR)(XCR)(XGR)(XGR)' GCGTNGCGG A ? 2 polyribonucleotide no no CGCUACGC CGCUACGC B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 XGR n 1 2 XCR n 1 3 XGR n 1 4 XTR n 1 5 XAR n 1 6 XGR n 1 7 XCR n 1 8 XGR n 1 9 XGR n 2 1 C n 2 2 G n 2 3 C n 2 4 U n 2 5 A n 2 6 C n 2 7 G n 2 8 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'The CeNA strand was synthesized.' 2 1 sample ? ? ? ? ? 'The RNA strand was synthesized.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 XAR 'DNA linking' . '[(1R,4S,6S)-4-(6-AMINO-9H-PURIN-9-YL)-6-HYDROXYCYCLOHEX-2-EN-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C12 H16 N5 O5 P' 341.260 XCR 'DNA linking' n '[(1R,4S,6S)-4-(4-amino-2-oxopyrimidin-1(2H)-yl)-6-hydroxycyclohex-2-en-1-yl]methyl dihydrogen phosphate' ? 'C11 H16 N3 O6 P' 317.235 XGR 'DNA linking' n '[(1R,4S,6S)-4-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-6-hydroxycyclohex-2-en-1-yl]methyl dihydrogen phosphate' ? 'C12 H16 N5 O6 P' 357.259 XTR 'DNA linking' n '[(1R,4S,6S)-6-hydroxy-4-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)cyclohex-2-en-1-yl]methyl dihydrogen phosphate' ? 'C12 H17 N2 O7 P' 332.246 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 XGR 1 1 1 XGR XGR A . n A 1 2 XCR 2 2 2 XCR XCR A . n A 1 3 XGR 3 3 3 XGR XGR A . n A 1 4 XTR 4 4 4 XTR XTR A . n A 1 5 XAR 5 5 5 XAR XAR A . n A 1 6 XGR 6 6 6 XGR XGR A . n A 1 7 XCR 7 7 7 XCR XCR A . n A 1 8 XGR 8 8 8 XGR XGR A . n A 1 9 XGR 9 9 9 XGR XGR A . n B 2 1 C 1 1 1 C C B . n B 2 2 G 2 2 2 G G B . n B 2 3 C 3 3 3 C C B . n B 2 4 U 4 4 4 U U B . n B 2 5 A 5 5 5 A A B . n B 2 6 C 6 6 6 C C B . n B 2 7 G 7 7 7 G G B . n B 2 8 C 8 8 8 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 100 100 MG MG A . D 3 MG 1 200 200 MG MG A . E 4 HOH 1 14 14 HOH HOH A . E 4 HOH 2 15 15 HOH HOH A . E 4 HOH 3 17 17 HOH HOH A . E 4 HOH 4 20 20 HOH HOH A . E 4 HOH 5 22 22 HOH HOH A . E 4 HOH 6 23 23 HOH HOH A . E 4 HOH 7 24 24 HOH HOH A . E 4 HOH 8 25 25 HOH HOH A . E 4 HOH 9 28 28 HOH HOH A . E 4 HOH 10 33 33 HOH HOH A . E 4 HOH 11 34 34 HOH HOH A . E 4 HOH 12 35 35 HOH HOH A . E 4 HOH 13 101 101 HOH HOH A . E 4 HOH 14 102 102 HOH HOH A . E 4 HOH 15 103 103 HOH HOH A . E 4 HOH 16 104 104 HOH HOH A . E 4 HOH 17 105 105 HOH HOH A . E 4 HOH 18 106 106 HOH HOH A . E 4 HOH 19 107 1 HOH HOH A . E 4 HOH 20 108 3 HOH HOH A . E 4 HOH 21 109 4 HOH HOH A . E 4 HOH 22 110 7 HOH HOH A . E 4 HOH 23 111 8 HOH HOH A . E 4 HOH 24 201 201 HOH HOH A . E 4 HOH 25 202 202 HOH HOH A . E 4 HOH 26 203 203 HOH HOH A . E 4 HOH 27 204 204 HOH HOH A . E 4 HOH 28 205 205 HOH HOH A . E 4 HOH 29 206 206 HOH HOH A . F 4 HOH 1 9 9 HOH HOH B . F 4 HOH 2 10 10 HOH HOH B . F 4 HOH 3 11 11 HOH HOH B . F 4 HOH 4 12 12 HOH HOH B . F 4 HOH 5 13 13 HOH HOH B . F 4 HOH 6 14 2 HOH HOH B . F 4 HOH 7 15 5 HOH HOH B . F 4 HOH 8 16 16 HOH HOH B . F 4 HOH 9 17 6 HOH HOH B . F 4 HOH 10 18 18 HOH HOH B . F 4 HOH 11 19 19 HOH HOH B . F 4 HOH 12 21 21 HOH HOH B . F 4 HOH 13 26 26 HOH HOH B . F 4 HOH 14 27 27 HOH HOH B . F 4 HOH 15 29 29 HOH HOH B . F 4 HOH 16 30 30 HOH HOH B . F 4 HOH 17 31 31 HOH HOH B . F 4 HOH 18 32 32 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A XGR 9 ? N1 ? A XGR 9 N1 2 1 Y 1 A XGR 9 ? C2 ? A XGR 9 C2 3 1 Y 1 A XGR 9 ? N2 ? A XGR 9 N2 4 1 Y 1 A XGR 9 ? N3 ? A XGR 9 N3 5 1 Y 1 A XGR 9 ? C4 ? A XGR 9 C4 6 1 Y 1 A XGR 9 ? C5 ? A XGR 9 C5 7 1 Y 1 A XGR 9 ? C6 ? A XGR 9 C6 8 1 Y 1 A XGR 9 ? O6 ? A XGR 9 O6 9 1 Y 1 A XGR 9 ? N7 ? A XGR 9 N7 10 1 Y 1 A XGR 9 ? C8 ? A XGR 9 C8 11 1 Y 1 A XGR 9 ? N9 ? A XGR 9 N9 12 1 Y 1 A XGR 9 ? "C1'" ? A XGR 9 "C1'" 13 1 Y 1 A XGR 9 ? "C2'" ? A XGR 9 "C2'" 14 1 Y 1 A XGR 9 ? "C3'" ? A XGR 9 "C3'" 15 1 Y 1 A XGR 9 ? "O3'" ? A XGR 9 "O3'" 16 1 Y 1 A XGR 9 ? "C4'" ? A XGR 9 "C4'" 17 1 Y 1 A XGR 9 ? "C5'" ? A XGR 9 "C5'" 18 1 Y 1 A XGR 9 ? "C6'" ? A XGR 9 "C6'" 19 1 Y 1 A XGR 9 ? "C7'" ? A XGR 9 "C7'" # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 2 SCALA 3.3.9 2008/10/21 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 PHASER 2.1.4 'Thu Nov 13 11:40:59 2008' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? # _cell.length_a 41.919 _cell.length_b 41.919 _cell.length_c 68.444 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3KNC _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.entry_id 3KNC _symmetry.Int_Tables_number 154 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3KNC _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.22 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 61.82 _exptl_crystal.description 'The structure factor file contains Friedel pairs' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.pdbx_details '0.2M Magnesium formate, VAPOR DIFFUSION, HANGING DROP, temperature 289K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Magnesium formate' ? ? ? 1 2 2 'Magnesium formate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-09-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.pdbx_wavelength_list 1.0000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06DA # _reflns.entry_id 3KNC _reflns.d_resolution_high 2.50 _reflns.d_resolution_low 36.3 _reflns.number_all 2460 _reflns.number_obs 2575 _reflns.pdbx_Rsym_value 0.048 _reflns.pdbx_redundancy 9.400 _reflns.percent_possible_obs 98.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3KNC _refine.ls_d_res_high 2.50 _refine.ls_d_res_low 36.3 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.020 _refine.ls_number_reflns_obs 2574 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'The Friedel pairs were used in phasing' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.187 _refine.ls_R_factor_R_work 0.184 _refine.ls_wR_factor_R_work 0.184 _refine.ls_R_factor_R_free 0.232 _refine.ls_wR_factor_R_free 0.232 _refine.ls_percent_reflns_R_free 4.400 _refine.ls_number_reflns_R_free 114 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 61.046 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 4.490 _refine.aniso_B[2][2] 4.490 _refine.aniso_B[3][3] -6.730 _refine.aniso_B[1][2] 2.240 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.970 _refine.correlation_coeff_Fo_to_Fc_free 0.958 _refine.overall_SU_R_Cruickshank_DPI 0.310 _refine.overall_SU_R_free 0.237 _refine.pdbx_overall_ESU_R 0.310 _refine.pdbx_overall_ESU_R_Free 0.237 _refine.overall_SU_ML 0.190 _refine.overall_SU_B 9.838 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.762 _refine.B_iso_max 83.75 _refine.B_iso_min 37.01 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 341 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 47 _refine_hist.number_atoms_total 390 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 36.3 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 396 0.018 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 617 2.247 2.972 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 63 0.120 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 199 0.010 0.017 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1 0.108 1.500 ? 'X-RAY DIFFRACTION' ? r_scbond_it 392 2.812 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 605 4.317 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.57 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.270 _refine_ls_shell.number_reflns_R_work 169 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.379 _refine_ls_shell.R_factor_R_free 0.733 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 9 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 178 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KNC _struct.title 'Crystal structure of the CeNA-RNA hybrid octamer ce(GCGTAGCG):r(CGCUACGC)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KNC _struct_keywords.text 'cyclohexene, sugar modification, RNA, RNA-CYCLOHEXENE-RNA HYBRID complex' _struct_keywords.pdbx_keywords 'RNA/CYCLOHEXENE-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 PDB 3KNC 3KNC 1 GCGTAGCGG 1 ? 2 PDB 3KNC 3KNC 2 CGCUACGC 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3KNC A 1 ? 9 ? 3KNC 1 ? 9 ? 1 9 2 2 3KNC B 1 ? 8 ? 3KNC 1 ? 8 ? 1 8 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KNC XGR A 1 ? PDB 3KNC C 2 'engineered mutation' 1 1 1 3KNC XCR A 2 ? PDB 3KNC G 3 'engineered mutation' 2 2 1 3KNC XGR A 3 ? PDB 3KNC DT 4 'engineered mutation' 3 3 1 3KNC XTR A 4 ? PDB 3KNC A 5 'engineered mutation' 4 4 1 3KNC XAR A 5 ? PDB 3KNC G 6 'engineered mutation' 5 5 1 3KNC XGR A 6 ? PDB 3KNC C 7 'engineered mutation' 6 6 1 3KNC XCR A 7 ? PDB 3KNC G 8 'engineered mutation' 7 7 1 3KNC XGR A 8 ? PDB 3KNC G 9 'engineered mutation' 8 8 1 3KNC XGR A 9 ? PDB 3KNC G 10 'engineered mutation' 9 9 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1280 ? 1 MORE -34.1 ? 1 'SSA (A^2)' 11444 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'Biological unit is the same as asymmetric unit' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A XTR 4 "O3'" ? ? ? 1_555 A XAR 5 P ? ? A XTR 4 A XAR 5 1_555 ? ? ? ? ? ? ? 1.572 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 100 A HOH 101 1_555 ? ? ? ? ? ? ? 2.136 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 100 A HOH 102 1_555 ? ? ? ? ? ? ? 2.134 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 100 A HOH 103 1_555 ? ? ? ? ? ? ? 2.130 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 100 A HOH 104 1_555 ? ? ? ? ? ? ? 2.146 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 100 A HOH 105 1_555 ? ? ? ? ? ? ? 2.137 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 100 A HOH 106 1_555 ? ? ? ? ? ? ? 2.141 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 200 A HOH 201 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 200 A HOH 202 1_555 ? ? ? ? ? ? ? 2.172 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 200 A HOH 203 1_555 ? ? ? ? ? ? ? 2.176 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 200 A HOH 204 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 200 A HOH 205 1_555 ? ? ? ? ? ? ? 2.164 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 200 A HOH 206 1_555 ? ? ? ? ? ? ? 2.163 ? ? hydrog1 hydrog ? ? A XGR 1 N1 ? ? ? 1_555 B C 8 N3 ? ? A XGR 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A XGR 1 N2 ? ? ? 1_555 B C 8 O2 ? ? A XGR 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A XGR 1 O6 ? ? ? 1_555 B C 8 N4 ? ? A XGR 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A XCR 2 N3 ? ? ? 1_555 B G 7 N1 ? ? A XCR 2 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A XCR 2 N4 ? ? ? 1_555 B G 7 O6 ? ? A XCR 2 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A XCR 2 O2 ? ? ? 1_555 B G 7 N2 ? ? A XCR 2 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A XGR 3 N1 ? ? ? 1_555 B C 6 N3 ? ? A XGR 3 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A XGR 3 N2 ? ? ? 1_555 B C 6 O2 ? ? A XGR 3 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A XGR 3 O6 ? ? ? 1_555 B C 6 N4 ? ? A XGR 3 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A XTR 4 N3 ? ? ? 1_555 B A 5 N1 ? ? A XTR 4 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A XTR 4 O4 ? ? ? 1_555 B A 5 N6 ? ? A XTR 4 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A XGR 6 N1 ? ? ? 1_555 B C 3 N3 ? ? A XGR 6 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A XGR 6 N2 ? ? ? 1_555 B C 3 O2 ? ? A XGR 6 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A XGR 6 O6 ? ? ? 1_555 B C 3 N4 ? ? A XGR 6 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A XCR 7 N3 ? ? ? 1_555 B G 2 N1 ? ? A XCR 7 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A XCR 7 N4 ? ? ? 1_555 B G 2 O6 ? ? A XCR 7 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A XCR 7 O2 ? ? ? 1_555 B G 2 N2 ? ? A XCR 7 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A XGR 8 N1 ? ? ? 1_555 B C 1 N3 ? ? A XGR 8 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A XGR 8 N2 ? ? ? 1_555 B C 1 O2 ? ? A XGR 8 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A XGR 8 O6 ? ? ? 1_555 B C 1 N4 ? ? A XGR 8 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 101 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? A HOH 102 ? 1_555 176.6 ? 2 O ? E HOH . ? A HOH 101 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? A HOH 103 ? 1_555 92.0 ? 3 O ? E HOH . ? A HOH 102 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? A HOH 103 ? 1_555 86.0 ? 4 O ? E HOH . ? A HOH 101 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? A HOH 104 ? 1_555 92.6 ? 5 O ? E HOH . ? A HOH 102 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? A HOH 104 ? 1_555 90.0 ? 6 O ? E HOH . ? A HOH 103 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? A HOH 104 ? 1_555 90.3 ? 7 O ? E HOH . ? A HOH 101 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? A HOH 105 ? 1_555 90.9 ? 8 O ? E HOH . ? A HOH 102 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? A HOH 105 ? 1_555 86.5 ? 9 O ? E HOH . ? A HOH 103 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? A HOH 105 ? 1_555 90.9 ? 10 O ? E HOH . ? A HOH 104 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? A HOH 105 ? 1_555 176.2 ? 11 O ? E HOH . ? A HOH 101 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? A HOH 106 ? 1_555 86.1 ? 12 O ? E HOH . ? A HOH 102 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? A HOH 106 ? 1_555 96.1 ? 13 O ? E HOH . ? A HOH 103 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? A HOH 106 ? 1_555 177.4 ? 14 O ? E HOH . ? A HOH 104 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? A HOH 106 ? 1_555 88.1 ? 15 O ? E HOH . ? A HOH 105 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? A HOH 106 ? 1_555 90.8 ? 16 O ? E HOH . ? A HOH 201 ? 1_555 MG ? D MG . ? A MG 200 ? 1_555 O ? E HOH . ? A HOH 202 ? 1_555 179.4 ? 17 O ? E HOH . ? A HOH 201 ? 1_555 MG ? D MG . ? A MG 200 ? 1_555 O ? E HOH . ? A HOH 203 ? 1_555 89.5 ? 18 O ? E HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 200 ? 1_555 O ? E HOH . ? A HOH 203 ? 1_555 90.0 ? 19 O ? E HOH . ? A HOH 201 ? 1_555 MG ? D MG . ? A MG 200 ? 1_555 O ? E HOH . ? A HOH 204 ? 1_555 90.8 ? 20 O ? E HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 200 ? 1_555 O ? E HOH . ? A HOH 204 ? 1_555 88.8 ? 21 O ? E HOH . ? A HOH 203 ? 1_555 MG ? D MG . ? A MG 200 ? 1_555 O ? E HOH . ? A HOH 204 ? 1_555 88.5 ? 22 O ? E HOH . ? A HOH 201 ? 1_555 MG ? D MG . ? A MG 200 ? 1_555 O ? E HOH . ? A HOH 205 ? 1_555 89.1 ? 23 O ? E HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 200 ? 1_555 O ? E HOH . ? A HOH 205 ? 1_555 91.3 ? 24 O ? E HOH . ? A HOH 203 ? 1_555 MG ? D MG . ? A MG 200 ? 1_555 O ? E HOH . ? A HOH 205 ? 1_555 92.6 ? 25 O ? E HOH . ? A HOH 204 ? 1_555 MG ? D MG . ? A MG 200 ? 1_555 O ? E HOH . ? A HOH 205 ? 1_555 178.9 ? 26 O ? E HOH . ? A HOH 201 ? 1_555 MG ? D MG . ? A MG 200 ? 1_555 O ? E HOH . ? A HOH 206 ? 1_555 93.2 ? 27 O ? E HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 200 ? 1_555 O ? E HOH . ? A HOH 206 ? 1_555 87.2 ? 28 O ? E HOH . ? A HOH 203 ? 1_555 MG ? D MG . ? A MG 200 ? 1_555 O ? E HOH . ? A HOH 206 ? 1_555 176.4 ? 29 O ? E HOH . ? A HOH 204 ? 1_555 MG ? D MG . ? A MG 200 ? 1_555 O ? E HOH . ? A HOH 206 ? 1_555 89.0 ? 30 O ? E HOH . ? A HOH 205 ? 1_555 MG ? D MG . ? A MG 200 ? 1_555 O ? E HOH . ? A HOH 206 ? 1_555 89.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 100 ? 6 'BINDING SITE FOR RESIDUE MG A 100' AC2 Software A MG 200 ? 12 'BINDING SITE FOR RESIDUE MG A 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH E . ? HOH A 101 . ? 1_555 ? 2 AC1 6 HOH E . ? HOH A 102 . ? 1_555 ? 3 AC1 6 HOH E . ? HOH A 103 . ? 1_555 ? 4 AC1 6 HOH E . ? HOH A 104 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH A 105 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH A 106 . ? 1_555 ? 7 AC2 12 HOH E . ? HOH A 201 . ? 1_555 ? 8 AC2 12 HOH E . ? HOH A 201 . ? 5_555 ? 9 AC2 12 HOH E . ? HOH A 202 . ? 1_555 ? 10 AC2 12 HOH E . ? HOH A 202 . ? 5_555 ? 11 AC2 12 HOH E . ? HOH A 203 . ? 1_555 ? 12 AC2 12 HOH E . ? HOH A 203 . ? 5_555 ? 13 AC2 12 HOH E . ? HOH A 204 . ? 5_555 ? 14 AC2 12 HOH E . ? HOH A 204 . ? 1_555 ? 15 AC2 12 HOH E . ? HOH A 205 . ? 5_555 ? 16 AC2 12 HOH E . ? HOH A 205 . ? 1_555 ? 17 AC2 12 HOH E . ? HOH A 206 . ? 5_555 ? 18 AC2 12 HOH E . ? HOH A 206 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "C5'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 U _pdbx_validate_rmsd_bond.auth_seq_id_1 4 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C4'" _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 U _pdbx_validate_rmsd_bond.auth_seq_id_2 4 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.465 _pdbx_validate_rmsd_bond.bond_target_value 1.508 _pdbx_validate_rmsd_bond.bond_deviation -0.043 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.007 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A XGR 1 A XGR 1 ? DG ? 2 A XCR 2 A XCR 2 ? DC ? 3 A XGR 3 A XGR 3 ? DG ? 4 A XTR 4 A XTR 4 ? DT ? 5 A XGR 6 A XGR 6 ? DG ? 6 A XCR 7 A XCR 7 ? DC ? 7 A XGR 8 A XGR 8 ? DG ? 8 A XGR 9 A XGR 9 ? DG ? # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id MG _pdbx_struct_special_symmetry.auth_seq_id 200 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id MG _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_phasing_MR.entry_id 3KNC _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 31.370 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 24.900 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 24.900 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 DT OP3 O N N 73 DT P P N N 74 DT OP1 O N N 75 DT OP2 O N N 76 DT "O5'" O N N 77 DT "C5'" C N N 78 DT "C4'" C N R 79 DT "O4'" O N N 80 DT "C3'" C N S 81 DT "O3'" O N N 82 DT "C2'" C N N 83 DT "C1'" C N R 84 DT N1 N N N 85 DT C2 C N N 86 DT O2 O N N 87 DT N3 N N N 88 DT C4 C N N 89 DT O4 O N N 90 DT C5 C N N 91 DT C7 C N N 92 DT C6 C N N 93 DT HOP3 H N N 94 DT HOP2 H N N 95 DT "H5'" H N N 96 DT "H5''" H N N 97 DT "H4'" H N N 98 DT "H3'" H N N 99 DT "HO3'" H N N 100 DT "H2'" H N N 101 DT "H2''" H N N 102 DT "H1'" H N N 103 DT H3 H N N 104 DT H71 H N N 105 DT H72 H N N 106 DT H73 H N N 107 DT H6 H N N 108 G OP3 O N N 109 G P P N N 110 G OP1 O N N 111 G OP2 O N N 112 G "O5'" O N N 113 G "C5'" C N N 114 G "C4'" C N R 115 G "O4'" O N N 116 G "C3'" C N S 117 G "O3'" O N N 118 G "C2'" C N R 119 G "O2'" O N N 120 G "C1'" C N R 121 G N9 N Y N 122 G C8 C Y N 123 G N7 N Y N 124 G C5 C Y N 125 G C6 C N N 126 G O6 O N N 127 G N1 N N N 128 G C2 C N N 129 G N2 N N N 130 G N3 N N N 131 G C4 C Y N 132 G HOP3 H N N 133 G HOP2 H N N 134 G "H5'" H N N 135 G "H5''" H N N 136 G "H4'" H N N 137 G "H3'" H N N 138 G "HO3'" H N N 139 G "H2'" H N N 140 G "HO2'" H N N 141 G "H1'" H N N 142 G H8 H N N 143 G H1 H N N 144 G H21 H N N 145 G H22 H N N 146 HOH O O N N 147 HOH H1 H N N 148 HOH H2 H N N 149 MG MG MG N N 150 U OP3 O N N 151 U P P N N 152 U OP1 O N N 153 U OP2 O N N 154 U "O5'" O N N 155 U "C5'" C N N 156 U "C4'" C N R 157 U "O4'" O N N 158 U "C3'" C N S 159 U "O3'" O N N 160 U "C2'" C N R 161 U "O2'" O N N 162 U "C1'" C N R 163 U N1 N N N 164 U C2 C N N 165 U O2 O N N 166 U N3 N N N 167 U C4 C N N 168 U O4 O N N 169 U C5 C N N 170 U C6 C N N 171 U HOP3 H N N 172 U HOP2 H N N 173 U "H5'" H N N 174 U "H5''" H N N 175 U "H4'" H N N 176 U "H3'" H N N 177 U "HO3'" H N N 178 U "H2'" H N N 179 U "HO2'" H N N 180 U "H1'" H N N 181 U H3 H N N 182 U H5 H N N 183 U H6 H N N 184 XAR O3P O N N 185 XAR O1P O N N 186 XAR P P N N 187 XAR O2P O N N 188 XAR "O5'" O N N 189 XAR "C5'" C N N 190 XAR "C4'" C N R 191 XAR "C3'" C N S 192 XAR "O3'" O N N 193 XAR "C2'" C N N 194 XAR "C1'" C N S 195 XAR "C7'" C N N 196 XAR "C6'" C N N 197 XAR N9 N Y N 198 XAR C8 C Y N 199 XAR N7 N Y N 200 XAR C5 C Y N 201 XAR C4 C Y N 202 XAR N3 N Y N 203 XAR C6 C Y N 204 XAR N6 N N N 205 XAR N1 N Y N 206 XAR C2 C Y N 207 XAR HOP3 H N N 208 XAR HOP2 H N N 209 XAR "H5'1" H N N 210 XAR "H5'2" H N N 211 XAR "H4'" H N N 212 XAR "H3'" H N N 213 XAR H3T H N N 214 XAR "H2'1" H N N 215 XAR "H2'2" H N N 216 XAR "H1'" H N N 217 XAR "H7'" H N N 218 XAR "H6'" H N N 219 XAR H8 H N N 220 XAR HN61 H N N 221 XAR HN62 H N N 222 XAR H2 H N N 223 XCR P P N N 224 XCR N1 N N N 225 XCR C2 C N N 226 XCR O2 O N N 227 XCR N3 N N N 228 XCR C4 C N N 229 XCR N4 N N N 230 XCR C5 C N N 231 XCR C6 C N N 232 XCR "C1'" C N S 233 XCR "C2'" C N N 234 XCR "C3'" C N S 235 XCR "O3'" O N N 236 XCR "C4'" C N R 237 XCR "C5'" C N N 238 XCR "O5'" O N N 239 XCR "C6'" C N N 240 XCR "C7'" C N N 241 XCR OP1 O N N 242 XCR OP2 O N N 243 XCR OP3 O N N 244 XCR HN4 H N N 245 XCR HN4A H N N 246 XCR H5 H N N 247 XCR H6 H N N 248 XCR "H1'" H N N 249 XCR "H2'" H N N 250 XCR "H2'A" H N N 251 XCR "H3'" H N N 252 XCR "HO3'" H N N 253 XCR "H4'" H N N 254 XCR "H5'" H N N 255 XCR "H5'A" H N N 256 XCR "H6'" H N N 257 XCR "H7'" H N N 258 XCR HOP1 H N N 259 XCR HOP3 H N N 260 XGR P P N N 261 XGR N1 N N N 262 XGR C2 C N N 263 XGR N2 N N N 264 XGR N3 N N N 265 XGR C4 C Y N 266 XGR C5 C Y N 267 XGR C6 C N N 268 XGR O6 O N N 269 XGR N7 N Y N 270 XGR C8 C Y N 271 XGR N9 N Y N 272 XGR "C1'" C N S 273 XGR "C2'" C N N 274 XGR "C3'" C N S 275 XGR "O3'" O N N 276 XGR "C4'" C N R 277 XGR "C5'" C N N 278 XGR "O5'" O N N 279 XGR "C6'" C N N 280 XGR "C7'" C N N 281 XGR OP1 O N N 282 XGR OP2 O N N 283 XGR OP3 O N N 284 XGR HN1 H N N 285 XGR HN2 H N N 286 XGR HN2A H N N 287 XGR H8 H N N 288 XGR "H1'" H N N 289 XGR "H2'" H N N 290 XGR "H2'A" H N N 291 XGR "H3'" H N N 292 XGR "HO3'" H N N 293 XGR "H4'" H N N 294 XGR "H5'" H N N 295 XGR "H5'A" H N N 296 XGR "H6'" H N N 297 XGR "H7'" H N N 298 XGR HOP1 H N N 299 XGR HOP3 H N N 300 XTR OP3 O N N 301 XTR "C4'" C N R 302 XTR "C7'" C N N 303 XTR "C6'" C N N 304 XTR "C1'" C N S 305 XTR O4 O N N 306 XTR C4 C N N 307 XTR C5 C N N 308 XTR C5M C N N 309 XTR C6 C N N 310 XTR N3 N N N 311 XTR C2 C N N 312 XTR O2 O N N 313 XTR N1 N N N 314 XTR "C2'" C N N 315 XTR "C3'" C N S 316 XTR P P N N 317 XTR OP1 O N N 318 XTR OP2 O N N 319 XTR "O5'" O N N 320 XTR "C5'" C N N 321 XTR "O3'" O N N 322 XTR HOP3 H N N 323 XTR "H4'" H N N 324 XTR "H7'" H N N 325 XTR "H6'" H N N 326 XTR "H1'" H N N 327 XTR H5M H N N 328 XTR H5MA H N N 329 XTR H5MB H N N 330 XTR H6 H N N 331 XTR HN3 H N N 332 XTR "H2'" H N N 333 XTR "H2'A" H N N 334 XTR "H3'" H N N 335 XTR "H5'" H N N 336 XTR "H5'A" H N N 337 XTR "HO3'" H N N 338 XTR HOP2 H N N 339 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DT OP3 P sing N N 76 DT OP3 HOP3 sing N N 77 DT P OP1 doub N N 78 DT P OP2 sing N N 79 DT P "O5'" sing N N 80 DT OP2 HOP2 sing N N 81 DT "O5'" "C5'" sing N N 82 DT "C5'" "C4'" sing N N 83 DT "C5'" "H5'" sing N N 84 DT "C5'" "H5''" sing N N 85 DT "C4'" "O4'" sing N N 86 DT "C4'" "C3'" sing N N 87 DT "C4'" "H4'" sing N N 88 DT "O4'" "C1'" sing N N 89 DT "C3'" "O3'" sing N N 90 DT "C3'" "C2'" sing N N 91 DT "C3'" "H3'" sing N N 92 DT "O3'" "HO3'" sing N N 93 DT "C2'" "C1'" sing N N 94 DT "C2'" "H2'" sing N N 95 DT "C2'" "H2''" sing N N 96 DT "C1'" N1 sing N N 97 DT "C1'" "H1'" sing N N 98 DT N1 C2 sing N N 99 DT N1 C6 sing N N 100 DT C2 O2 doub N N 101 DT C2 N3 sing N N 102 DT N3 C4 sing N N 103 DT N3 H3 sing N N 104 DT C4 O4 doub N N 105 DT C4 C5 sing N N 106 DT C5 C7 sing N N 107 DT C5 C6 doub N N 108 DT C7 H71 sing N N 109 DT C7 H72 sing N N 110 DT C7 H73 sing N N 111 DT C6 H6 sing N N 112 G OP3 P sing N N 113 G OP3 HOP3 sing N N 114 G P OP1 doub N N 115 G P OP2 sing N N 116 G P "O5'" sing N N 117 G OP2 HOP2 sing N N 118 G "O5'" "C5'" sing N N 119 G "C5'" "C4'" sing N N 120 G "C5'" "H5'" sing N N 121 G "C5'" "H5''" sing N N 122 G "C4'" "O4'" sing N N 123 G "C4'" "C3'" sing N N 124 G "C4'" "H4'" sing N N 125 G "O4'" "C1'" sing N N 126 G "C3'" "O3'" sing N N 127 G "C3'" "C2'" sing N N 128 G "C3'" "H3'" sing N N 129 G "O3'" "HO3'" sing N N 130 G "C2'" "O2'" sing N N 131 G "C2'" "C1'" sing N N 132 G "C2'" "H2'" sing N N 133 G "O2'" "HO2'" sing N N 134 G "C1'" N9 sing N N 135 G "C1'" "H1'" sing N N 136 G N9 C8 sing Y N 137 G N9 C4 sing Y N 138 G C8 N7 doub Y N 139 G C8 H8 sing N N 140 G N7 C5 sing Y N 141 G C5 C6 sing N N 142 G C5 C4 doub Y N 143 G C6 O6 doub N N 144 G C6 N1 sing N N 145 G N1 C2 sing N N 146 G N1 H1 sing N N 147 G C2 N2 sing N N 148 G C2 N3 doub N N 149 G N2 H21 sing N N 150 G N2 H22 sing N N 151 G N3 C4 sing N N 152 HOH O H1 sing N N 153 HOH O H2 sing N N 154 U OP3 P sing N N 155 U OP3 HOP3 sing N N 156 U P OP1 doub N N 157 U P OP2 sing N N 158 U P "O5'" sing N N 159 U OP2 HOP2 sing N N 160 U "O5'" "C5'" sing N N 161 U "C5'" "C4'" sing N N 162 U "C5'" "H5'" sing N N 163 U "C5'" "H5''" sing N N 164 U "C4'" "O4'" sing N N 165 U "C4'" "C3'" sing N N 166 U "C4'" "H4'" sing N N 167 U "O4'" "C1'" sing N N 168 U "C3'" "O3'" sing N N 169 U "C3'" "C2'" sing N N 170 U "C3'" "H3'" sing N N 171 U "O3'" "HO3'" sing N N 172 U "C2'" "O2'" sing N N 173 U "C2'" "C1'" sing N N 174 U "C2'" "H2'" sing N N 175 U "O2'" "HO2'" sing N N 176 U "C1'" N1 sing N N 177 U "C1'" "H1'" sing N N 178 U N1 C2 sing N N 179 U N1 C6 sing N N 180 U C2 O2 doub N N 181 U C2 N3 sing N N 182 U N3 C4 sing N N 183 U N3 H3 sing N N 184 U C4 O4 doub N N 185 U C4 C5 sing N N 186 U C5 C6 doub N N 187 U C5 H5 sing N N 188 U C6 H6 sing N N 189 XAR O3P P sing N N 190 XAR O3P HOP3 sing N N 191 XAR O1P P doub N N 192 XAR P O2P sing N N 193 XAR P "O5'" sing N N 194 XAR O2P HOP2 sing N N 195 XAR "O5'" "C5'" sing N N 196 XAR "C5'" "C4'" sing N N 197 XAR "C5'" "H5'1" sing N N 198 XAR "C5'" "H5'2" sing N N 199 XAR "C4'" "C6'" sing N N 200 XAR "C4'" "C3'" sing N N 201 XAR "C4'" "H4'" sing N N 202 XAR "C3'" "O3'" sing N N 203 XAR "C3'" "C2'" sing N N 204 XAR "C3'" "H3'" sing N N 205 XAR "O3'" H3T sing N N 206 XAR "C2'" "C1'" sing N N 207 XAR "C2'" "H2'1" sing N N 208 XAR "C2'" "H2'2" sing N N 209 XAR "C1'" "C7'" sing N N 210 XAR "C1'" N9 sing N N 211 XAR "C1'" "H1'" sing N N 212 XAR "C7'" "C6'" doub N N 213 XAR "C7'" "H7'" sing N N 214 XAR "C6'" "H6'" sing N N 215 XAR N9 C8 sing Y N 216 XAR N9 C4 sing Y N 217 XAR C8 N7 doub Y N 218 XAR C8 H8 sing N N 219 XAR N7 C5 sing Y N 220 XAR C5 C4 doub Y N 221 XAR C5 C6 sing Y N 222 XAR C4 N3 sing Y N 223 XAR N3 C2 doub Y N 224 XAR C6 N1 doub Y N 225 XAR C6 N6 sing N N 226 XAR N6 HN61 sing N N 227 XAR N6 HN62 sing N N 228 XAR N1 C2 sing Y N 229 XAR C2 H2 sing N N 230 XCR OP2 P doub N N 231 XCR "O5'" P sing N N 232 XCR OP3 P sing N N 233 XCR P OP1 sing N N 234 XCR C2 N1 sing N N 235 XCR N1 C6 sing N N 236 XCR N1 "C1'" sing N N 237 XCR N3 C2 sing N N 238 XCR O2 C2 doub N N 239 XCR N3 C4 doub N N 240 XCR N4 C4 sing N N 241 XCR C4 C5 sing N N 242 XCR N4 HN4 sing N N 243 XCR N4 HN4A sing N N 244 XCR C5 C6 doub N N 245 XCR C5 H5 sing N N 246 XCR C6 H6 sing N N 247 XCR "C1'" "C7'" sing N N 248 XCR "C1'" "C2'" sing N N 249 XCR "C1'" "H1'" sing N N 250 XCR "C2'" "C3'" sing N N 251 XCR "C2'" "H2'" sing N N 252 XCR "C2'" "H2'A" sing N N 253 XCR "C3'" "C4'" sing N N 254 XCR "C3'" "O3'" sing N N 255 XCR "C3'" "H3'" sing N N 256 XCR "O3'" "HO3'" sing N N 257 XCR "C6'" "C4'" sing N N 258 XCR "C4'" "C5'" sing N N 259 XCR "C4'" "H4'" sing N N 260 XCR "O5'" "C5'" sing N N 261 XCR "C5'" "H5'" sing N N 262 XCR "C5'" "H5'A" sing N N 263 XCR "C7'" "C6'" doub N N 264 XCR "C6'" "H6'" sing N N 265 XCR "C7'" "H7'" sing N N 266 XCR OP1 HOP1 sing N N 267 XCR OP3 HOP3 sing N N 268 XGR "O5'" P sing N N 269 XGR OP2 P doub N N 270 XGR OP3 P sing N N 271 XGR P OP1 sing N N 272 XGR C2 N1 sing N N 273 XGR N1 C6 sing N N 274 XGR N1 HN1 sing N N 275 XGR N2 C2 sing N N 276 XGR C2 N3 doub N N 277 XGR N2 HN2 sing N N 278 XGR N2 HN2A sing N N 279 XGR N3 C4 sing N N 280 XGR C4 C5 doub Y N 281 XGR C4 N9 sing Y N 282 XGR C6 C5 sing N N 283 XGR C5 N7 sing Y N 284 XGR O6 C6 doub N N 285 XGR N7 C8 doub Y N 286 XGR N9 C8 sing Y N 287 XGR C8 H8 sing N N 288 XGR N9 "C1'" sing N N 289 XGR "C1'" "C7'" sing N N 290 XGR "C1'" "C2'" sing N N 291 XGR "C1'" "H1'" sing N N 292 XGR "C2'" "C3'" sing N N 293 XGR "C2'" "H2'" sing N N 294 XGR "C2'" "H2'A" sing N N 295 XGR "C3'" "C4'" sing N N 296 XGR "C3'" "O3'" sing N N 297 XGR "C3'" "H3'" sing N N 298 XGR "O3'" "HO3'" sing N N 299 XGR "C6'" "C4'" sing N N 300 XGR "C4'" "C5'" sing N N 301 XGR "C4'" "H4'" sing N N 302 XGR "O5'" "C5'" sing N N 303 XGR "C5'" "H5'" sing N N 304 XGR "C5'" "H5'A" sing N N 305 XGR "C7'" "C6'" doub N N 306 XGR "C6'" "H6'" sing N N 307 XGR "C7'" "H7'" sing N N 308 XGR OP1 HOP1 sing N N 309 XGR OP3 HOP3 sing N N 310 XTR OP3 HOP3 sing N N 311 XTR "C4'" "C6'" sing N N 312 XTR "C4'" "H4'" sing N N 313 XTR "C7'" "C6'" doub N N 314 XTR "C7'" "H7'" sing N N 315 XTR "C6'" "H6'" sing N N 316 XTR "C1'" "C7'" sing N N 317 XTR "C1'" N1 sing N N 318 XTR "C1'" "H1'" sing N N 319 XTR C4 O4 doub N N 320 XTR C5 C4 sing N N 321 XTR C5 C5M sing N N 322 XTR C5M H5M sing N N 323 XTR C5M H5MA sing N N 324 XTR C5M H5MB sing N N 325 XTR C6 C5 doub N N 326 XTR C6 H6 sing N N 327 XTR N3 C4 sing N N 328 XTR N3 HN3 sing N N 329 XTR C2 N3 sing N N 330 XTR O2 C2 doub N N 331 XTR N1 C6 sing N N 332 XTR N1 C2 sing N N 333 XTR "C2'" "C1'" sing N N 334 XTR "C2'" "C3'" sing N N 335 XTR "C2'" "H2'" sing N N 336 XTR "C2'" "H2'A" sing N N 337 XTR "C3'" "C4'" sing N N 338 XTR "C3'" "H3'" sing N N 339 XTR P OP3 sing N N 340 XTR P OP1 doub N N 341 XTR OP2 P sing N N 342 XTR "O5'" P sing N N 343 XTR "C5'" "C4'" sing N N 344 XTR "C5'" "O5'" sing N N 345 XTR "C5'" "H5'" sing N N 346 XTR "C5'" "H5'A" sing N N 347 XTR "O3'" "C3'" sing N N 348 XTR "O3'" "HO3'" sing N N 349 XTR OP2 HOP2 sing N N 350 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3KNC 'double helix' 3KNC 'a-form double helix' 3KNC 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A XGR 1 1_555 B C 8 1_555 0.061 -0.125 0.545 1.753 -12.277 1.052 1 A_XGR1:C8_B A 1 ? B 8 ? 19 1 1 A XCR 2 1_555 B G 7 1_555 0.005 -0.244 0.521 -5.102 -12.505 1.030 2 A_XCR2:G7_B A 2 ? B 7 ? 19 1 1 A XGR 3 1_555 B C 6 1_555 -0.165 0.080 0.317 -9.561 -14.167 5.729 3 A_XGR3:C6_B A 3 ? B 6 ? 19 1 1 A XTR 4 1_555 B A 5 1_555 0.375 -0.121 0.439 -8.304 -13.046 -2.908 4 A_XTR4:A5_B A 4 ? B 5 ? 20 1 1 A XGR 6 1_555 B C 3 1_555 -0.063 -0.279 -0.065 -2.720 -11.560 -5.217 5 A_XGR6:C3_B A 6 ? B 3 ? 19 1 1 A XCR 7 1_555 B G 2 1_555 -0.466 -0.086 0.191 -3.273 -10.283 0.859 6 A_XCR7:G2_B A 7 ? B 2 ? 19 1 1 A XGR 8 1_555 B C 1 1_555 -0.473 0.018 -0.252 -9.236 -15.039 5.307 7 A_XGR8:C1_B A 8 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A XGR 1 1_555 B C 8 1_555 A XCR 2 1_555 B G 7 1_555 -0.159 -2.349 3.270 -1.344 3.054 35.098 -4.319 0.069 3.065 5.050 2.222 35.251 1 AA_XGR1XCR2:G7C8_BB A 1 ? B 8 ? A 2 ? B 7 ? 1 A XCR 2 1_555 B G 7 1_555 A XGR 3 1_555 B C 6 1_555 -0.151 -1.941 3.125 2.134 8.686 30.917 -4.865 0.607 2.487 15.881 -3.901 32.155 2 AA_XCR2XGR3:C6G7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A XGR 3 1_555 B C 6 1_555 A XTR 4 1_555 B A 5 1_555 -0.415 -1.691 3.143 1.632 6.416 35.729 -3.532 0.874 2.787 10.348 -2.631 36.317 3 AA_XGR3XTR4:A5C6_BB A 3 ? B 6 ? A 4 ? B 5 ? 1 A XTR 4 1_555 B A 5 1_555 A XGR 6 1_555 B C 3 1_555 0.181 -3.741 5.819 3.937 28.602 59.744 -5.281 0.086 3.873 27.077 -3.727 65.770 4 AA_XTR4XGR6:C3A5_BB A 4 ? B 5 ? A 6 ? B 3 ? 1 A XGR 6 1_555 B C 3 1_555 A XCR 7 1_555 B G 2 1_555 0.957 -2.249 3.382 1.749 5.223 28.518 -5.613 -1.531 2.983 10.479 -3.508 29.035 5 AA_XGR6XCR7:G2C3_BB A 6 ? B 3 ? A 7 ? B 2 ? 1 A XCR 7 1_555 B G 2 1_555 A XGR 8 1_555 B C 1 1_555 -0.250 -2.222 3.246 1.636 13.860 29.913 -5.921 0.678 2.029 25.197 -2.974 32.941 6 AA_XCR7XGR8:C1G2_BB A 7 ? B 2 ? A 8 ? B 1 ? # _atom_sites.entry_id 3KNC _atom_sites.fract_transf_matrix[1][1] 0.023856 _atom_sites.fract_transf_matrix[1][2] 0.013773 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027546 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014610 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 . XGR A 1 1 ? 15.217 -13.830 -2.098 1.00 49.22 ? 1 XGR A N1 1 HETATM 2 C C2 . XGR A 1 1 ? 14.996 -14.919 -1.316 1.00 48.32 ? 1 XGR A C2 1 HETATM 3 N N2 . XGR A 1 1 ? 15.852 -15.950 -1.453 1.00 49.38 ? 1 XGR A N2 1 HETATM 4 N N3 . XGR A 1 1 ? 13.983 -14.984 -0.471 1.00 50.70 ? 1 XGR A N3 1 HETATM 5 C C4 . XGR A 1 1 ? 13.211 -13.874 -0.438 1.00 52.42 ? 1 XGR A C4 1 HETATM 6 C C5 . XGR A 1 1 ? 13.374 -12.752 -1.182 1.00 51.19 ? 1 XGR A C5 1 HETATM 7 C C6 . XGR A 1 1 ? 14.433 -12.686 -2.087 1.00 50.38 ? 1 XGR A C6 1 HETATM 8 O O6 . XGR A 1 1 ? 14.719 -11.745 -2.823 1.00 54.08 ? 1 XGR A O6 1 HETATM 9 N N7 . XGR A 1 1 ? 12.394 -11.816 -0.902 1.00 53.93 ? 1 XGR A N7 1 HETATM 10 C C8 . XGR A 1 1 ? 11.641 -12.400 -0.008 1.00 54.29 ? 1 XGR A C8 1 HETATM 11 N N9 . XGR A 1 1 ? 12.078 -13.643 0.342 1.00 55.93 ? 1 XGR A N9 1 HETATM 12 C "C1'" . XGR A 1 1 ? 11.445 -14.513 1.332 1.00 58.70 ? 1 XGR A "C1'" 1 HETATM 13 C "C2'" . XGR A 1 1 ? 11.997 -14.342 2.753 1.00 60.71 ? 1 XGR A "C2'" 1 HETATM 14 C "C3'" . XGR A 1 1 ? 11.470 -13.073 3.433 1.00 63.73 ? 1 XGR A "C3'" 1 HETATM 15 O "O3'" . XGR A 1 1 ? 11.949 -12.968 4.744 1.00 62.65 ? 1 XGR A "O3'" 1 HETATM 16 C "C4'" . XGR A 1 1 ? 9.965 -13.072 3.555 1.00 68.56 ? 1 XGR A "C4'" 1 HETATM 17 C "C5'" . XGR A 1 1 ? 9.471 -11.645 3.819 1.00 73.28 ? 1 XGR A "C5'" 1 HETATM 18 O "O5'" . XGR A 1 1 ? 8.857 -11.065 2.659 1.00 76.22 ? 1 XGR A "O5'" 1 HETATM 19 C "C6'" . XGR A 1 1 ? 9.321 -13.612 2.306 1.00 66.78 ? 1 XGR A "C6'" 1 HETATM 20 C "C7'" . XGR A 1 1 ? 9.976 -14.226 1.337 1.00 62.16 ? 1 XGR A "C7'" 1 HETATM 21 P P . XCR A 1 2 ? 13.493 -12.749 5.018 1.00 63.70 ? 2 XCR A P 1 HETATM 22 N N1 . XCR A 1 2 ? 17.201 -14.312 1.160 1.00 58.19 ? 2 XCR A N1 1 HETATM 23 C C2 . XCR A 1 2 ? 18.156 -13.936 0.190 1.00 57.53 ? 2 XCR A C2 1 HETATM 24 O O2 . XCR A 1 2 ? 19.105 -14.698 -0.102 1.00 61.35 ? 2 XCR A O2 1 HETATM 25 N N3 . XCR A 1 2 ? 18.025 -12.727 -0.422 1.00 53.53 ? 2 XCR A N3 1 HETATM 26 C C4 . XCR A 1 2 ? 17.009 -11.903 -0.135 1.00 54.60 ? 2 XCR A C4 1 HETATM 27 N N4 . XCR A 1 2 ? 16.920 -10.725 -0.793 1.00 54.32 ? 2 XCR A N4 1 HETATM 28 C C5 . XCR A 1 2 ? 16.027 -12.255 0.831 1.00 55.40 ? 2 XCR A C5 1 HETATM 29 C C6 . XCR A 1 2 ? 16.171 -13.443 1.432 1.00 58.02 ? 2 XCR A C6 1 HETATM 30 C "C1'" . XCR A 1 2 ? 17.280 -15.646 1.905 1.00 61.13 ? 2 XCR A "C1'" 1 HETATM 31 C "C2'" . XCR A 1 2 ? 18.148 -15.604 3.177 1.00 62.98 ? 2 XCR A "C2'" 1 HETATM 32 C "C3'" . XCR A 1 2 ? 17.508 -14.784 4.324 1.00 62.18 ? 2 XCR A "C3'" 1 HETATM 33 O "O3'" . XCR A 1 2 ? 18.344 -14.793 5.478 1.00 63.44 ? 2 XCR A "O3'" 1 HETATM 34 C "C4'" . XCR A 1 2 ? 16.187 -15.361 4.753 1.00 59.37 ? 2 XCR A "C4'" 1 HETATM 35 C "C5'" . XCR A 1 2 ? 15.384 -14.292 5.401 1.00 55.89 ? 2 XCR A "C5'" 1 HETATM 36 O "O5'" . XCR A 1 2 ? 14.211 -14.101 4.665 1.00 58.85 ? 2 XCR A "O5'" 1 HETATM 37 C "C6'" . XCR A 1 2 ? 15.435 -15.961 3.593 1.00 61.20 ? 2 XCR A "C6'" 1 HETATM 38 C "C7'" . XCR A 1 2 ? 15.909 -16.103 2.355 1.00 60.48 ? 2 XCR A "C7'" 1 HETATM 39 O OP1 . XCR A 1 2 ? 13.677 -12.567 6.468 1.00 69.13 ? 2 XCR A OP1 1 HETATM 40 O OP2 . XCR A 1 2 ? 13.888 -11.727 4.033 1.00 66.16 ? 2 XCR A OP2 1 HETATM 41 P P . XGR A 1 3 ? 19.180 -13.509 5.869 1.00 62.48 ? 3 XGR A P 1 HETATM 42 N N1 . XGR A 1 3 ? 22.005 -9.662 -1.190 1.00 46.91 ? 3 XGR A N1 1 HETATM 43 C C2 . XGR A 1 3 ? 23.031 -10.553 -1.265 1.00 51.10 ? 3 XGR A C2 1 HETATM 44 N N2 . XGR A 1 3 ? 23.992 -10.289 -2.182 1.00 54.36 ? 3 XGR A N2 1 HETATM 45 N N3 . XGR A 1 3 ? 23.126 -11.625 -0.502 1.00 49.00 ? 3 XGR A N3 1 HETATM 46 C C4 . XGR A 1 3 ? 22.105 -11.735 0.353 1.00 48.98 ? 3 XGR A C4 1 HETATM 47 C C5 . XGR A 1 3 ? 21.039 -10.901 0.482 1.00 45.34 ? 3 XGR A C5 1 HETATM 48 C C6 . XGR A 1 3 ? 20.952 -9.773 -0.335 1.00 46.72 ? 3 XGR A C6 1 HETATM 49 O O6 . XGR A 1 3 ? 20.075 -8.904 -0.373 1.00 52.70 ? 3 XGR A O6 1 HETATM 50 N N7 . XGR A 1 3 ? 20.174 -11.359 1.469 1.00 48.54 ? 3 XGR A N7 1 HETATM 51 C C8 . XGR A 1 3 ? 20.747 -12.460 1.910 1.00 51.98 ? 3 XGR A C8 1 HETATM 52 N N9 . XGR A 1 3 ? 21.937 -12.764 1.285 1.00 55.07 ? 3 XGR A N9 1 HETATM 53 C "C1'" . XGR A 1 3 ? 22.849 -13.925 1.523 1.00 60.04 ? 3 XGR A "C1'" 1 HETATM 54 C "C2'" . XGR A 1 3 ? 23.781 -13.706 2.714 1.00 62.30 ? 3 XGR A "C2'" 1 HETATM 55 C "C3'" . XGR A 1 3 ? 23.048 -13.700 4.058 1.00 61.95 ? 3 XGR A "C3'" 1 HETATM 56 O "O3'" . XGR A 1 3 ? 24.050 -13.573 5.040 1.00 64.66 ? 3 XGR A "O3'" 1 HETATM 57 C "C4'" . XGR A 1 3 ? 22.376 -15.051 4.302 1.00 63.44 ? 3 XGR A "C4'" 1 HETATM 58 C "C5'" . XGR A 1 3 ? 21.202 -14.989 5.274 1.00 59.34 ? 3 XGR A "C5'" 1 HETATM 59 O "O5'" . XGR A 1 3 ? 20.564 -13.745 5.131 1.00 58.56 ? 3 XGR A "O5'" 1 HETATM 60 C "C6'" . XGR A 1 3 ? 21.905 -15.695 3.010 1.00 66.22 ? 3 XGR A "C6'" 1 HETATM 61 C "C7'" . XGR A 1 3 ? 22.106 -15.206 1.786 1.00 63.29 ? 3 XGR A "C7'" 1 HETATM 62 O OP1 . XGR A 1 3 ? 19.555 -13.613 7.289 1.00 69.68 ? 3 XGR A OP1 1 HETATM 63 O OP2 . XGR A 1 3 ? 18.496 -12.322 5.300 1.00 62.47 ? 3 XGR A OP2 1 HETATM 64 C "C4'" . XTR A 1 4 ? 27.668 -11.206 3.220 1.00 63.14 ? 4 XTR A "C4'" 1 HETATM 65 C "C7'" . XTR A 1 4 ? 26.476 -11.073 0.982 1.00 59.27 ? 4 XTR A "C7'" 1 HETATM 66 C "C6'" . XTR A 1 4 ? 26.947 -11.776 2.013 1.00 64.09 ? 4 XTR A "C6'" 1 HETATM 67 C "C1'" . XTR A 1 4 ? 26.584 -9.584 0.802 1.00 57.16 ? 4 XTR A "C1'" 1 HETATM 68 O O4 . XTR A 1 4 ? 21.735 -7.231 1.679 1.00 54.71 ? 4 XTR A O4 1 HETATM 69 C C4 . XTR A 1 4 ? 22.819 -7.767 1.496 1.00 48.66 ? 4 XTR A C4 1 HETATM 70 C C5 . XTR A 1 4 ? 23.265 -8.856 2.284 1.00 44.25 ? 4 XTR A C5 1 HETATM 71 C C5M . XTR A 1 4 ? 22.412 -9.385 3.380 1.00 43.01 ? 4 XTR A C5M 1 HETATM 72 C C6 . XTR A 1 4 ? 24.441 -9.395 2.033 1.00 46.58 ? 4 XTR A C6 1 HETATM 73 N N3 . XTR A 1 4 ? 23.681 -7.355 0.526 1.00 50.34 ? 4 XTR A N3 1 HETATM 74 C C2 . XTR A 1 4 ? 24.892 -7.894 0.253 1.00 49.42 ? 4 XTR A C2 1 HETATM 75 O O2 . XTR A 1 4 ? 25.580 -7.456 -0.641 1.00 53.50 ? 4 XTR A O2 1 HETATM 76 N N1 . XTR A 1 4 ? 25.265 -8.941 1.036 1.00 50.50 ? 4 XTR A N1 1 HETATM 77 C "C2'" . XTR A 1 4 ? 27.651 -9.087 1.767 1.00 60.89 ? 4 XTR A "C2'" 1 HETATM 78 C "C3'" . XTR A 1 4 ? 27.544 -9.691 3.174 1.00 63.14 ? 4 XTR A "C3'" 1 HETATM 79 P P . XTR A 1 4 ? 24.684 -12.199 5.550 1.00 65.66 ? 4 XTR A P 1 HETATM 80 O OP1 . XTR A 1 4 ? 25.573 -12.582 6.652 1.00 69.90 ? 4 XTR A OP1 1 HETATM 81 O OP2 . XTR A 1 4 ? 23.631 -11.184 5.731 1.00 62.83 ? 4 XTR A OP2 1 HETATM 82 O "O5'" . XTR A 1 4 ? 25.654 -11.678 4.412 1.00 63.45 ? 4 XTR A "O5'" 1 HETATM 83 C "C5'" . XTR A 1 4 ? 27.061 -11.798 4.482 1.00 61.48 ? 4 XTR A "C5'" 1 HETATM 84 O "O3'" . XTR A 1 4 ? 28.534 -9.109 3.989 1.00 64.70 ? 4 XTR A "O3'" 1 HETATM 85 O O1P . XAR A 1 5 ? 26.741 -7.837 5.186 1.00 64.19 ? 5 XAR A O1P 1 HETATM 86 P P . XAR A 1 5 ? 28.185 -7.962 5.006 1.00 62.43 ? 5 XAR A P 1 HETATM 87 O O2P . XAR A 1 5 ? 29.136 -8.196 6.092 1.00 63.69 ? 5 XAR A O2P 1 HETATM 88 O "O5'" . XAR A 1 5 ? 28.569 -6.677 4.167 1.00 60.21 ? 5 XAR A "O5'" 1 HETATM 89 C "C5'" . XAR A 1 5 ? 29.915 -6.421 3.827 1.00 59.46 ? 5 XAR A "C5'" 1 HETATM 90 C "C4'" . XAR A 1 5 ? 29.977 -5.353 2.763 1.00 58.51 ? 5 XAR A "C4'" 1 HETATM 91 C "C3'" . XAR A 1 5 ? 29.102 -4.190 3.169 1.00 57.68 ? 5 XAR A "C3'" 1 HETATM 92 O "O3'" . XAR A 1 5 ? 29.868 -3.430 4.071 1.00 60.15 ? 5 XAR A "O3'" 1 HETATM 93 C "C2'" . XAR A 1 5 ? 28.692 -3.325 1.979 1.00 56.39 ? 5 XAR A "C2'" 1 HETATM 94 C "C1'" . XAR A 1 5 ? 27.822 -4.127 1.001 1.00 55.19 ? 5 XAR A "C1'" 1 HETATM 95 C "C7'" . XAR A 1 5 ? 28.506 -5.450 0.764 1.00 58.64 ? 5 XAR A "C7'" 1 HETATM 96 C "C6'" . XAR A 1 5 ? 29.462 -5.984 1.514 1.00 59.26 ? 5 XAR A "C6'" 1 HETATM 97 N N9 . XAR A 1 5 ? 26.439 -4.327 1.491 1.00 53.08 ? 5 XAR A N9 1 HETATM 98 C C8 . XAR A 1 5 ? 25.998 -5.188 2.462 1.00 50.20 ? 5 XAR A C8 1 HETATM 99 N N7 . XAR A 1 5 ? 24.711 -5.097 2.684 1.00 49.76 ? 5 XAR A N7 1 HETATM 100 C C5 . XAR A 1 5 ? 24.272 -4.134 1.797 1.00 47.85 ? 5 XAR A C5 1 HETATM 101 C C4 . XAR A 1 5 ? 25.311 -3.654 1.062 1.00 49.70 ? 5 XAR A C4 1 HETATM 102 N N3 . XAR A 1 5 ? 25.245 -2.712 0.108 1.00 52.67 ? 5 XAR A N3 1 HETATM 103 C C6 . XAR A 1 5 ? 23.009 -3.588 1.524 1.00 49.73 ? 5 XAR A C6 1 HETATM 104 N N6 . XAR A 1 5 ? 21.893 -3.947 2.143 1.00 51.52 ? 5 XAR A N6 1 HETATM 105 N N1 . XAR A 1 5 ? 22.900 -2.643 0.586 1.00 50.81 ? 5 XAR A N1 1 HETATM 106 C C2 . XAR A 1 5 ? 24.001 -2.268 -0.058 1.00 50.50 ? 5 XAR A C2 1 HETATM 107 P P . XGR A 1 6 ? 29.207 -2.611 5.254 1.00 57.89 ? 6 XGR A P 1 HETATM 108 N N1 . XGR A 1 6 ? 20.986 0.095 2.821 1.00 45.96 ? 6 XGR A N1 1 HETATM 109 C C2 . XGR A 1 6 ? 21.622 1.125 2.203 1.00 43.12 ? 6 XGR A C2 1 HETATM 110 N N2 . XGR A 1 6 ? 20.849 2.049 1.660 1.00 44.61 ? 6 XGR A N2 1 HETATM 111 N N3 . XGR A 1 6 ? 22.914 1.241 2.151 1.00 42.73 ? 6 XGR A N3 1 HETATM 112 C C4 . XGR A 1 6 ? 23.528 0.208 2.757 1.00 45.71 ? 6 XGR A C4 1 HETATM 113 C C5 . XGR A 1 6 ? 22.990 -0.871 3.359 1.00 43.83 ? 6 XGR A C5 1 HETATM 114 C C6 . XGR A 1 6 ? 21.615 -0.977 3.417 1.00 46.16 ? 6 XGR A C6 1 HETATM 115 O O6 . XGR A 1 6 ? 20.950 -1.877 3.934 1.00 50.05 ? 6 XGR A O6 1 HETATM 116 N N7 . XGR A 1 6 ? 23.965 -1.714 3.870 1.00 48.12 ? 6 XGR A N7 1 HETATM 117 C C8 . XGR A 1 6 ? 25.088 -1.148 3.551 1.00 49.05 ? 6 XGR A C8 1 HETATM 118 N N9 . XGR A 1 6 ? 24.896 0.032 2.870 1.00 52.05 ? 6 XGR A N9 1 HETATM 119 C "C1'" . XGR A 1 6 ? 25.921 0.946 2.370 1.00 54.85 ? 6 XGR A "C1'" 1 HETATM 120 C "C2'" . XGR A 1 6 ? 26.304 1.903 3.513 1.00 55.95 ? 6 XGR A "C2'" 1 HETATM 121 C "C3'" . XGR A 1 6 ? 27.231 1.252 4.542 1.00 55.21 ? 6 XGR A "C3'" 1 HETATM 122 O "O3'" . XGR A 1 6 ? 27.619 2.179 5.527 1.00 56.40 ? 6 XGR A "O3'" 1 HETATM 123 C "C4'" . XGR A 1 6 ? 28.511 0.872 3.891 1.00 54.22 ? 6 XGR A "C4'" 1 HETATM 124 C "C5'" . XGR A 1 6 ? 29.182 -0.089 4.816 1.00 53.84 ? 6 XGR A "C5'" 1 HETATM 125 O "O5'" . XGR A 1 6 ? 28.695 -1.349 4.471 1.00 52.70 ? 6 XGR A "O5'" 1 HETATM 126 C "C6'" . XGR A 1 6 ? 28.239 0.143 2.610 1.00 56.74 ? 6 XGR A "C6'" 1 HETATM 127 C "C7'" . XGR A 1 6 ? 27.109 0.161 1.929 1.00 54.52 ? 6 XGR A "C7'" 1 HETATM 128 O OP1 . XGR A 1 6 ? 30.251 -2.106 6.151 1.00 62.02 ? 6 XGR A OP1 1 HETATM 129 O OP2 . XGR A 1 6 ? 28.068 -3.373 5.765 1.00 58.36 ? 6 XGR A OP2 1 HETATM 130 P P . XCR A 1 7 ? 27.031 2.071 6.977 1.00 52.44 ? 7 XCR A P 1 HETATM 131 N N1 . XCR A 1 7 ? 21.657 2.552 5.695 1.00 54.05 ? 7 XCR A N1 1 HETATM 132 C C2 . XCR A 1 7 ? 20.309 2.218 5.756 1.00 54.89 ? 7 XCR A C2 1 HETATM 133 O O2 . XCR A 1 7 ? 19.471 3.031 5.349 1.00 57.26 ? 7 XCR A O2 1 HETATM 134 N N3 . XCR A 1 7 ? 19.971 1.019 6.270 1.00 53.86 ? 7 XCR A N3 1 HETATM 135 C C4 . XCR A 1 7 ? 20.924 0.193 6.714 1.00 54.66 ? 7 XCR A C4 1 HETATM 136 N N4 . XCR A 1 7 ? 20.601 -0.999 7.229 1.00 57.50 ? 7 XCR A N4 1 HETATM 137 C C5 . XCR A 1 7 ? 22.275 0.521 6.668 1.00 51.51 ? 7 XCR A C5 1 HETATM 138 C C6 . XCR A 1 7 ? 22.582 1.691 6.161 1.00 52.77 ? 7 XCR A C6 1 HETATM 139 C "C1'" . XCR A 1 7 ? 22.094 3.870 5.152 1.00 54.29 ? 7 XCR A "C1'" 1 HETATM 140 C "C2'" . XCR A 1 7 ? 22.201 4.887 6.303 1.00 56.58 ? 7 XCR A "C2'" 1 HETATM 141 C "C3'" . XCR A 1 7 ? 23.453 4.729 7.163 1.00 54.42 ? 7 XCR A "C3'" 1 HETATM 142 O "O3'" . XCR A 1 7 ? 23.451 5.707 8.190 1.00 56.81 ? 7 XCR A "O3'" 1 HETATM 143 C "C4'" . XCR A 1 7 ? 24.692 4.944 6.305 1.00 54.18 ? 7 XCR A "C4'" 1 HETATM 144 C "C5'" . XCR A 1 7 ? 25.899 4.356 7.003 1.00 52.44 ? 7 XCR A "C5'" 1 HETATM 145 O "O5'" . XCR A 1 7 ? 25.773 2.964 6.937 1.00 52.07 ? 7 XCR A "O5'" 1 HETATM 146 C "C6'" . XCR A 1 7 ? 24.571 4.248 4.970 1.00 55.85 ? 7 XCR A "C6'" 1 HETATM 147 C "C7'" . XCR A 1 7 ? 23.438 3.762 4.462 1.00 56.00 ? 7 XCR A "C7'" 1 HETATM 148 O OP1 . XCR A 1 7 ? 27.954 2.735 7.871 1.00 58.40 ? 7 XCR A OP1 1 HETATM 149 O OP2 . XCR A 1 7 ? 26.539 0.707 7.130 1.00 52.60 ? 7 XCR A OP2 1 HETATM 150 P P . XGR A 1 8 ? 22.631 5.525 9.531 1.00 55.58 ? 8 XGR A P 1 HETATM 151 N N1 . XGR A 1 8 ? 15.761 0.258 9.690 1.00 63.24 ? 8 XGR A N1 1 HETATM 152 C C2 . XGR A 1 8 ? 14.955 1.335 9.393 1.00 62.35 ? 8 XGR A C2 1 HETATM 153 N N2 . XGR A 1 8 ? 13.654 1.103 9.455 1.00 64.20 ? 8 XGR A N2 1 HETATM 154 N N3 . XGR A 1 8 ? 15.398 2.547 9.076 1.00 60.34 ? 8 XGR A N3 1 HETATM 155 C C4 . XGR A 1 8 ? 16.755 2.586 9.053 1.00 57.26 ? 8 XGR A C4 1 HETATM 156 C C5 . XGR A 1 8 ? 17.641 1.566 9.320 1.00 57.38 ? 8 XGR A C5 1 HETATM 157 C C6 . XGR A 1 8 ? 17.168 0.284 9.681 1.00 61.96 ? 8 XGR A C6 1 HETATM 158 O O6 . XGR A 1 8 ? 17.854 -0.739 9.964 1.00 61.70 ? 8 XGR A O6 1 HETATM 159 N N7 . XGR A 1 8 ? 18.942 1.997 9.184 1.00 55.20 ? 8 XGR A N7 1 HETATM 160 C C8 . XGR A 1 8 ? 18.828 3.241 8.845 1.00 53.66 ? 8 XGR A C8 1 HETATM 161 N N9 . XGR A 1 8 ? 17.547 3.672 8.754 1.00 54.33 ? 8 XGR A N9 1 HETATM 162 C "C1'" . XGR A 1 8 ? 17.148 5.001 8.346 1.00 56.79 ? 8 XGR A "C1'" 1 HETATM 163 C "C2'" . XGR A 1 8 ? 16.975 5.975 9.510 1.00 58.81 ? 8 XGR A "C2'" 1 HETATM 164 C "C3'" . XGR A 1 8 ? 18.307 6.450 10.080 1.00 58.49 ? 8 XGR A "C3'" 1 HETATM 165 O "O3'" . XGR A 1 8 ? 18.043 7.361 11.122 1.00 61.33 ? 8 XGR A "O3'" 1 HETATM 166 C "C4'" . XGR A 1 8 ? 19.176 7.144 9.043 1.00 54.84 ? 8 XGR A "C4'" 1 HETATM 167 C "C5'" . XGR A 1 8 ? 20.615 7.174 9.515 1.00 53.16 ? 8 XGR A "C5'" 1 HETATM 168 O "O5'" . XGR A 1 8 ? 21.182 5.953 9.122 1.00 54.32 ? 8 XGR A "O5'" 1 HETATM 169 C "C6'" . XGR A 1 8 ? 19.103 6.414 7.732 1.00 55.32 ? 8 XGR A "C6'" 1 HETATM 170 C "C7'" . XGR A 1 8 ? 18.220 5.479 7.409 1.00 54.86 ? 8 XGR A "C7'" 1 HETATM 171 O OP1 . XGR A 1 8 ? 23.021 6.551 10.483 1.00 55.87 ? 8 XGR A OP1 1 HETATM 172 O OP2 . XGR A 1 8 ? 22.556 4.085 9.781 1.00 55.96 ? 8 XGR A OP2 1 HETATM 173 P P . XGR A 1 9 ? 18.449 6.941 12.593 1.00 61.45 ? 9 XGR A P 1 HETATM 174 O "O5'" . XGR A 1 9 ? 17.934 8.242 13.377 1.00 63.46 ? 9 XGR A "O5'" 1 HETATM 175 O OP1 . XGR A 1 9 ? 19.913 6.876 12.749 1.00 58.41 ? 9 XGR A OP1 1 HETATM 176 O OP2 . XGR A 1 9 ? 17.513 5.881 12.958 1.00 62.25 ? 9 XGR A OP2 1 ATOM 177 O "O5'" . C B 2 1 ? 11.436 -7.160 9.721 1.00 80.15 ? 1 C B "O5'" 1 ATOM 178 C "C5'" . C B 2 1 ? 10.333 -6.852 10.550 1.00 78.89 ? 1 C B "C5'" 1 ATOM 179 C "C4'" . C B 2 1 ? 9.813 -5.446 10.305 1.00 79.27 ? 1 C B "C4'" 1 ATOM 180 O "O4'" . C B 2 1 ? 10.345 -4.557 11.339 1.00 78.98 ? 1 C B "O4'" 1 ATOM 181 C "C3'" . C B 2 1 ? 10.207 -4.785 8.975 1.00 78.02 ? 1 C B "C3'" 1 ATOM 182 O "O3'" . C B 2 1 ? 9.310 -5.005 7.920 1.00 77.95 ? 1 C B "O3'" 1 ATOM 183 C "C2'" . C B 2 1 ? 10.212 -3.314 9.339 1.00 76.69 ? 1 C B "C2'" 1 ATOM 184 O "O2'" . C B 2 1 ? 8.913 -2.775 9.330 1.00 75.01 ? 1 C B "O2'" 1 ATOM 185 C "C1'" . C B 2 1 ? 10.856 -3.373 10.732 1.00 76.94 ? 1 C B "C1'" 1 ATOM 186 N N1 . C B 2 1 ? 12.382 -3.460 10.598 1.00 74.71 ? 1 C B N1 1 ATOM 187 C C2 . C B 2 1 ? 13.158 -2.298 10.517 1.00 72.86 ? 1 C B C2 1 ATOM 188 O O2 . C B 2 1 ? 12.628 -1.190 10.613 1.00 73.14 ? 1 C B O2 1 ATOM 189 N N3 . C B 2 1 ? 14.492 -2.418 10.374 1.00 71.54 ? 1 C B N3 1 ATOM 190 C C4 . C B 2 1 ? 15.046 -3.616 10.285 1.00 68.63 ? 1 C B C4 1 ATOM 191 N N4 . C B 2 1 ? 16.350 -3.666 10.123 1.00 67.58 ? 1 C B N4 1 ATOM 192 C C5 . C B 2 1 ? 14.301 -4.808 10.327 1.00 69.50 ? 1 C B C5 1 ATOM 193 C C6 . C B 2 1 ? 12.990 -4.684 10.490 1.00 72.97 ? 1 C B C6 1 ATOM 194 P P . G B 2 2 ? 9.956 -5.258 6.480 1.00 79.86 ? 2 G B P 1 ATOM 195 O OP1 . G B 2 2 ? 8.857 -5.594 5.578 1.00 82.06 ? 2 G B OP1 1 ATOM 196 O OP2 . G B 2 2 ? 11.126 -6.173 6.570 1.00 77.58 ? 2 G B OP2 1 ATOM 197 O "O5'" . G B 2 2 ? 10.477 -3.813 6.067 1.00 77.67 ? 2 G B "O5'" 1 ATOM 198 C "C5'" . G B 2 2 ? 9.609 -2.694 6.041 1.00 73.96 ? 2 G B "C5'" 1 ATOM 199 C "C4'" . G B 2 2 ? 10.346 -1.425 5.621 1.00 70.57 ? 2 G B "C4'" 1 ATOM 200 O "O4'" . G B 2 2 ? 11.169 -0.959 6.724 1.00 71.88 ? 2 G B "O4'" 1 ATOM 201 C "C3'" . G B 2 2 ? 11.321 -1.511 4.456 1.00 67.66 ? 2 G B "C3'" 1 ATOM 202 O "O3'" . G B 2 2 ? 10.614 -1.373 3.297 1.00 64.35 ? 2 G B "O3'" 1 ATOM 203 C "C2'" . G B 2 2 ? 12.073 -0.228 4.721 1.00 68.74 ? 2 G B "C2'" 1 ATOM 204 O "O2'" . G B 2 2 ? 11.255 0.893 4.480 1.00 71.73 ? 2 G B "O2'" 1 ATOM 205 C "C1'" . G B 2 2 ? 12.327 -0.340 6.213 1.00 68.01 ? 2 G B "C1'" 1 ATOM 206 N N9 . G B 2 2 ? 13.515 -1.134 6.503 1.00 64.03 ? 2 G B N9 1 ATOM 207 C C8 . G B 2 2 ? 13.622 -2.461 6.812 1.00 61.87 ? 2 G B C8 1 ATOM 208 N N7 . G B 2 2 ? 14.850 -2.861 6.972 1.00 59.95 ? 2 G B N7 1 ATOM 209 C C5 . G B 2 2 ? 15.598 -1.724 6.764 1.00 58.64 ? 2 G B C5 1 ATOM 210 C C6 . G B 2 2 ? 16.985 -1.538 6.801 1.00 59.09 ? 2 G B C6 1 ATOM 211 O O6 . G B 2 2 ? 17.869 -2.381 7.058 1.00 58.39 ? 2 G B O6 1 ATOM 212 N N1 . G B 2 2 ? 17.325 -0.224 6.480 1.00 59.71 ? 2 G B N1 1 ATOM 213 C C2 . G B 2 2 ? 16.437 0.773 6.170 1.00 61.05 ? 2 G B C2 1 ATOM 214 N N2 . G B 2 2 ? 16.939 1.975 5.886 1.00 61.13 ? 2 G B N2 1 ATOM 215 N N3 . G B 2 2 ? 15.135 0.616 6.168 1.00 61.95 ? 2 G B N3 1 ATOM 216 C C4 . G B 2 2 ? 14.796 -0.660 6.466 1.00 62.11 ? 2 G B C4 1 ATOM 217 P P . C B 2 3 ? 11.198 -1.627 1.835 1.00 65.02 ? 3 C B P 1 ATOM 218 O OP1 . C B 2 3 ? 10.057 -1.307 0.990 1.00 71.30 ? 3 C B OP1 1 ATOM 219 O OP2 . C B 2 3 ? 11.850 -2.930 1.655 1.00 59.37 ? 3 C B OP2 1 ATOM 220 O "O5'" . C B 2 3 ? 12.251 -0.450 1.623 1.00 68.89 ? 3 C B "O5'" 1 ATOM 221 C "C5'" . C B 2 3 ? 11.819 0.908 1.415 1.00 68.82 ? 3 C B "C5'" 1 ATOM 222 C "C4'" . C B 2 3 ? 13.011 1.801 1.082 1.00 68.38 ? 3 C B "C4'" 1 ATOM 223 O "O4'" . C B 2 3 ? 13.842 1.983 2.253 1.00 68.23 ? 3 C B "O4'" 1 ATOM 224 C "C3'" . C B 2 3 ? 14.002 1.256 0.061 1.00 67.47 ? 3 C B "C3'" 1 ATOM 225 O "O3'" . C B 2 3 ? 13.541 1.466 -1.224 1.00 61.97 ? 3 C B "O3'" 1 ATOM 226 C "C2'" . C B 2 3 ? 15.170 2.186 0.349 1.00 68.91 ? 3 C B "C2'" 1 ATOM 227 O "O2'" . C B 2 3 ? 14.918 3.524 -0.044 1.00 70.94 ? 3 C B "O2'" 1 ATOM 228 C "C1'" . C B 2 3 ? 15.202 2.089 1.870 1.00 66.12 ? 3 C B "C1'" 1 ATOM 229 N N1 . C B 2 3 ? 16.030 0.927 2.362 1.00 61.63 ? 3 C B N1 1 ATOM 230 C C2 . C B 2 3 ? 17.434 1.040 2.438 1.00 62.41 ? 3 C B C2 1 ATOM 231 O O2 . C B 2 3 ? 17.978 2.109 2.141 1.00 65.33 ? 3 C B O2 1 ATOM 232 N N3 . C B 2 3 ? 18.178 -0.022 2.850 1.00 59.19 ? 3 C B N3 1 ATOM 233 C C4 . C B 2 3 ? 17.560 -1.140 3.195 1.00 56.23 ? 3 C B C4 1 ATOM 234 N N4 . C B 2 3 ? 18.307 -2.139 3.609 1.00 56.32 ? 3 C B N4 1 ATOM 235 C C5 . C B 2 3 ? 16.159 -1.294 3.127 1.00 54.95 ? 3 C B C5 1 ATOM 236 C C6 . C B 2 3 ? 15.442 -0.245 2.704 1.00 58.93 ? 3 C B C6 1 ATOM 237 P P . U B 2 4 ? 13.970 0.553 -2.439 1.00 62.13 ? 4 U B P 1 ATOM 238 O OP1 . U B 2 4 ? 13.186 1.160 -3.524 1.00 67.29 ? 4 U B OP1 1 ATOM 239 O OP2 . U B 2 4 ? 13.966 -0.871 -2.143 1.00 59.75 ? 4 U B OP2 1 ATOM 240 O "O5'" . U B 2 4 ? 15.473 0.812 -2.774 1.00 62.71 ? 4 U B "O5'" 1 ATOM 241 C "C5'" . U B 2 4 ? 15.869 2.106 -3.120 1.00 64.60 ? 4 U B "C5'" 1 ATOM 242 C "C4'" . U B 2 4 ? 17.294 2.139 -3.458 1.00 60.63 ? 4 U B "C4'" 1 ATOM 243 O "O4'" . U B 2 4 ? 17.966 2.089 -2.173 1.00 61.20 ? 4 U B "O4'" 1 ATOM 244 C "C3'" . U B 2 4 ? 17.813 0.903 -4.081 1.00 62.02 ? 4 U B "C3'" 1 ATOM 245 O "O3'" . U B 2 4 ? 17.313 0.808 -5.408 1.00 62.23 ? 4 U B "O3'" 1 ATOM 246 C "C2'" . U B 2 4 ? 19.301 0.978 -3.768 1.00 60.87 ? 4 U B "C2'" 1 ATOM 247 O "O2'" . U B 2 4 ? 20.041 1.817 -4.623 1.00 63.71 ? 4 U B "O2'" 1 ATOM 248 C "C1'" . U B 2 4 ? 19.209 1.446 -2.305 1.00 58.24 ? 4 U B "C1'" 1 ATOM 249 N N1 . U B 2 4 ? 19.244 0.270 -1.401 1.00 55.42 ? 4 U B N1 1 ATOM 250 C C2 . U B 2 4 ? 20.439 -0.329 -1.182 1.00 55.77 ? 4 U B C2 1 ATOM 251 O O2 . U B 2 4 ? 21.458 0.080 -1.618 1.00 63.80 ? 4 U B O2 1 ATOM 252 N N3 . U B 2 4 ? 20.470 -1.429 -0.421 1.00 53.66 ? 4 U B N3 1 ATOM 253 C C4 . U B 2 4 ? 19.415 -2.037 0.147 1.00 52.72 ? 4 U B C4 1 ATOM 254 O O4 . U B 2 4 ? 19.644 -3.036 0.806 1.00 53.74 ? 4 U B O4 1 ATOM 255 C C5 . U B 2 4 ? 18.159 -1.407 -0.122 1.00 52.24 ? 4 U B C5 1 ATOM 256 C C6 . U B 2 4 ? 18.116 -0.299 -0.880 1.00 55.47 ? 4 U B C6 1 ATOM 257 P P . A B 2 5 ? 17.759 -0.327 -6.436 1.00 59.64 ? 5 A B P 1 ATOM 258 O OP1 . A B 2 5 ? 17.240 0.105 -7.729 1.00 63.38 ? 5 A B OP1 1 ATOM 259 O OP2 . A B 2 5 ? 17.406 -1.647 -5.939 1.00 62.28 ? 5 A B OP2 1 ATOM 260 O "O5'" . A B 2 5 ? 19.326 -0.266 -6.460 1.00 56.45 ? 5 A B "O5'" 1 ATOM 261 C "C5'" . A B 2 5 ? 19.948 -0.966 -7.519 1.00 56.12 ? 5 A B "C5'" 1 ATOM 262 C "C4'" . A B 2 5 ? 21.383 -1.132 -7.189 1.00 58.44 ? 5 A B "C4'" 1 ATOM 263 O "O4'" . A B 2 5 ? 21.566 -0.823 -5.800 1.00 61.56 ? 5 A B "O4'" 1 ATOM 264 C "C3'" . A B 2 5 ? 21.890 -2.514 -7.297 1.00 63.36 ? 5 A B "C3'" 1 ATOM 265 O "O3'" . A B 2 5 ? 22.196 -2.763 -8.598 1.00 66.92 ? 5 A B "O3'" 1 ATOM 266 C "C2'" . A B 2 5 ? 23.023 -2.624 -6.317 1.00 62.68 ? 5 A B "C2'" 1 ATOM 267 O "O2'" . A B 2 5 ? 24.232 -2.172 -6.821 1.00 66.68 ? 5 A B "O2'" 1 ATOM 268 C "C1'" . A B 2 5 ? 22.483 -1.743 -5.208 1.00 61.15 ? 5 A B "C1'" 1 ATOM 269 N N9 . A B 2 5 ? 21.826 -2.560 -4.170 1.00 57.92 ? 5 A B N9 1 ATOM 270 C C8 . A B 2 5 ? 20.495 -2.570 -3.821 1.00 57.00 ? 5 A B C8 1 ATOM 271 N N7 . A B 2 5 ? 20.208 -3.426 -2.859 1.00 56.85 ? 5 A B N7 1 ATOM 272 C C5 . A B 2 5 ? 21.444 -4.006 -2.563 1.00 53.42 ? 5 A B C5 1 ATOM 273 C C6 . A B 2 5 ? 21.834 -4.972 -1.642 1.00 51.97 ? 5 A B C6 1 ATOM 274 N N6 . A B 2 5 ? 20.973 -5.544 -0.818 1.00 54.35 ? 5 A B N6 1 ATOM 275 N N1 . A B 2 5 ? 23.119 -5.342 -1.571 1.00 51.83 ? 5 A B N1 1 ATOM 276 C C2 . A B 2 5 ? 23.962 -4.762 -2.401 1.00 53.98 ? 5 A B C2 1 ATOM 277 N N3 . A B 2 5 ? 23.723 -3.829 -3.323 1.00 55.53 ? 5 A B N3 1 ATOM 278 C C4 . A B 2 5 ? 22.433 -3.491 -3.353 1.00 54.47 ? 5 A B C4 1 ATOM 279 P P . C B 2 6 ? 21.284 -3.838 -9.359 1.00 70.77 ? 6 C B P 1 ATOM 280 O OP1 . C B 2 6 ? 21.364 -3.518 -10.794 1.00 76.42 ? 6 C B OP1 1 ATOM 281 O OP2 . C B 2 6 ? 19.918 -3.995 -8.804 1.00 66.81 ? 6 C B OP2 1 ATOM 282 O "O5'" . C B 2 6 ? 22.206 -5.099 -9.038 1.00 70.06 ? 6 C B "O5'" 1 ATOM 283 C "C5'" . C B 2 6 ? 23.587 -4.953 -9.270 1.00 71.43 ? 6 C B "C5'" 1 ATOM 284 C "C4'" . C B 2 6 ? 24.396 -5.946 -8.477 1.00 72.48 ? 6 C B "C4'" 1 ATOM 285 O "O4'" . C B 2 6 ? 24.367 -5.524 -7.103 1.00 72.12 ? 6 C B "O4'" 1 ATOM 286 C "C3'" . C B 2 6 ? 23.835 -7.352 -8.404 1.00 74.25 ? 6 C B "C3'" 1 ATOM 287 O "O3'" . C B 2 6 ? 23.997 -8.089 -9.621 1.00 77.08 ? 6 C B "O3'" 1 ATOM 288 C "C2'" . C B 2 6 ? 24.643 -7.863 -7.215 1.00 73.22 ? 6 C B "C2'" 1 ATOM 289 O "O2'" . C B 2 6 ? 26.002 -8.106 -7.501 1.00 75.40 ? 6 C B "O2'" 1 ATOM 290 C "C1'" . C B 2 6 ? 24.477 -6.673 -6.259 1.00 71.44 ? 6 C B "C1'" 1 ATOM 291 N N1 . C B 2 6 ? 23.214 -6.796 -5.374 1.00 66.46 ? 6 C B N1 1 ATOM 292 C C2 . C B 2 6 ? 23.138 -7.665 -4.268 1.00 61.93 ? 6 C B C2 1 ATOM 293 O O2 . C B 2 6 ? 24.109 -8.342 -3.945 1.00 63.67 ? 6 C B O2 1 ATOM 294 N N3 . C B 2 6 ? 22.013 -7.760 -3.564 1.00 58.70 ? 6 C B N3 1 ATOM 295 C C4 . C B 2 6 ? 20.978 -7.037 -3.931 1.00 63.42 ? 6 C B C4 1 ATOM 296 N N4 . C B 2 6 ? 19.842 -7.135 -3.239 1.00 66.55 ? 6 C B N4 1 ATOM 297 C C5 . C B 2 6 ? 21.016 -6.159 -5.041 1.00 65.31 ? 6 C B C5 1 ATOM 298 C C6 . C B 2 6 ? 22.139 -6.062 -5.727 1.00 64.56 ? 6 C B C6 1 ATOM 299 P P . G B 2 7 ? 23.097 -9.381 -9.971 1.00 80.26 ? 7 G B P 1 ATOM 300 O OP1 . G B 2 7 ? 23.747 -9.932 -11.166 1.00 82.61 ? 7 G B OP1 1 ATOM 301 O OP2 . G B 2 7 ? 21.641 -9.126 -9.913 1.00 78.98 ? 7 G B OP2 1 ATOM 302 O "O5'" . G B 2 7 ? 23.369 -10.435 -8.828 1.00 80.15 ? 7 G B "O5'" 1 ATOM 303 C "C5'" . G B 2 7 ? 24.454 -11.317 -9.023 1.00 78.95 ? 7 G B "C5'" 1 ATOM 304 C "C4'" . G B 2 7 ? 24.497 -12.221 -7.826 1.00 76.56 ? 7 G B "C4'" 1 ATOM 305 O "O4'" . G B 2 7 ? 24.310 -11.358 -6.675 1.00 74.37 ? 7 G B "O4'" 1 ATOM 306 C "C3'" . G B 2 7 ? 23.312 -13.163 -7.703 1.00 75.72 ? 7 G B "C3'" 1 ATOM 307 O "O3'" . G B 2 7 ? 23.421 -14.331 -8.461 1.00 76.92 ? 7 G B "O3'" 1 ATOM 308 C "C2'" . G B 2 7 ? 23.446 -13.438 -6.227 1.00 73.39 ? 7 G B "C2'" 1 ATOM 309 O "O2'" . G B 2 7 ? 24.618 -14.180 -5.927 1.00 74.92 ? 7 G B "O2'" 1 ATOM 310 C "C1'" . G B 2 7 ? 23.589 -12.050 -5.673 1.00 68.20 ? 7 G B "C1'" 1 ATOM 311 N N9 . G B 2 7 ? 22.311 -11.399 -5.398 1.00 60.06 ? 7 G B N9 1 ATOM 312 C C8 . G B 2 7 ? 21.692 -10.322 -6.006 1.00 56.91 ? 7 G B C8 1 ATOM 313 N N7 . G B 2 7 ? 20.538 -10.014 -5.438 1.00 53.91 ? 7 G B N7 1 ATOM 314 C C5 . G B 2 7 ? 20.408 -10.936 -4.401 1.00 51.09 ? 7 G B C5 1 ATOM 315 C C6 . G B 2 7 ? 19.399 -11.114 -3.448 1.00 52.37 ? 7 G B C6 1 ATOM 316 O O6 . G B 2 7 ? 18.355 -10.464 -3.260 1.00 56.84 ? 7 G B O6 1 ATOM 317 N N1 . G B 2 7 ? 19.678 -12.191 -2.619 1.00 54.58 ? 7 G B N1 1 ATOM 318 C C2 . G B 2 7 ? 20.814 -12.993 -2.655 1.00 56.98 ? 7 G B C2 1 ATOM 319 N N2 . G B 2 7 ? 20.908 -14.008 -1.746 1.00 56.44 ? 7 G B N2 1 ATOM 320 N N3 . G B 2 7 ? 21.786 -12.810 -3.535 1.00 54.60 ? 7 G B N3 1 ATOM 321 C C4 . G B 2 7 ? 21.493 -11.781 -4.369 1.00 54.53 ? 7 G B C4 1 ATOM 322 P P . C B 2 8 ? 22.058 -14.895 -9.044 1.00 75.17 ? 8 C B P 1 ATOM 323 O OP1 . C B 2 8 ? 22.522 -15.732 -10.158 1.00 80.05 ? 8 C B OP1 1 ATOM 324 O OP2 . C B 2 8 ? 21.062 -13.798 -9.242 1.00 73.18 ? 8 C B OP2 1 ATOM 325 O "O5'" . C B 2 8 ? 21.526 -15.830 -7.875 1.00 72.24 ? 8 C B "O5'" 1 ATOM 326 C "C5'" . C B 2 8 ? 22.277 -16.938 -7.457 1.00 68.03 ? 8 C B "C5'" 1 ATOM 327 C "C4'" . C B 2 8 ? 21.658 -17.361 -6.155 1.00 65.14 ? 8 C B "C4'" 1 ATOM 328 O "O4'" . C B 2 8 ? 21.244 -16.168 -5.481 1.00 61.09 ? 8 C B "O4'" 1 ATOM 329 C "C3'" . C B 2 8 ? 20.332 -17.992 -6.379 1.00 67.43 ? 8 C B "C3'" 1 ATOM 330 O "O3'" . C B 2 8 ? 20.490 -19.362 -6.717 1.00 74.60 ? 8 C B "O3'" 1 ATOM 331 C "C2'" . C B 2 8 ? 19.627 -17.753 -5.048 1.00 66.25 ? 8 C B "C2'" 1 ATOM 332 O "O2'" . C B 2 8 ? 19.754 -18.778 -4.098 1.00 71.51 ? 8 C B "O2'" 1 ATOM 333 C "C1'" . C B 2 8 ? 20.262 -16.480 -4.548 1.00 59.25 ? 8 C B "C1'" 1 ATOM 334 N N1 . C B 2 8 ? 19.310 -15.423 -4.672 1.00 55.55 ? 8 C B N1 1 ATOM 335 C C2 . C B 2 8 ? 18.177 -15.350 -3.840 1.00 55.26 ? 8 C B C2 1 ATOM 336 O O2 . C B 2 8 ? 18.000 -16.204 -2.953 1.00 60.19 ? 8 C B O2 1 ATOM 337 N N3 . C B 2 8 ? 17.301 -14.326 -4.016 1.00 52.66 ? 8 C B N3 1 ATOM 338 C C4 . C B 2 8 ? 17.503 -13.447 -5.006 1.00 50.93 ? 8 C B C4 1 ATOM 339 N N4 . C B 2 8 ? 16.614 -12.463 -5.190 1.00 49.28 ? 8 C B N4 1 ATOM 340 C C5 . C B 2 8 ? 18.627 -13.541 -5.872 1.00 52.03 ? 8 C B C5 1 ATOM 341 C C6 . C B 2 8 ? 19.505 -14.530 -5.679 1.00 54.21 ? 8 C B C6 1 HETATM 342 MG MG . MG C 3 . ? 22.698 -4.889 6.723 1.00 59.22 ? 100 MG A MG 1 HETATM 343 MG MG . MG D 3 . ? 21.962 0.016 11.400 0.50 37.01 ? 200 MG A MG 1 HETATM 344 O O . HOH E 4 . ? 24.789 -13.187 -1.607 1.00 73.45 ? 14 HOH A O 1 HETATM 345 O O . HOH E 4 . ? 24.515 -8.894 6.414 1.00 80.92 ? 15 HOH A O 1 HETATM 346 O O . HOH E 4 . ? 18.074 -9.566 2.861 1.00 65.21 ? 17 HOH A O 1 HETATM 347 O O . HOH E 4 . ? 10.969 -6.593 1.011 1.00 69.55 ? 20 HOH A O 1 HETATM 348 O O . HOH E 4 . ? 11.450 -9.516 2.775 1.00 79.37 ? 22 HOH A O 1 HETATM 349 O O . HOH E 4 . ? 29.428 0.162 8.657 1.00 64.28 ? 23 HOH A O 1 HETATM 350 O O . HOH E 4 . ? 21.170 3.714 11.778 1.00 72.86 ? 24 HOH A O 1 HETATM 351 O O . HOH E 4 . ? 26.298 -2.054 7.240 1.00 61.53 ? 25 HOH A O 1 HETATM 352 O O . HOH E 4 . ? 21.949 8.226 12.916 1.00 70.24 ? 28 HOH A O 1 HETATM 353 O O . HOH E 4 . ? 24.170 10.715 12.677 1.00 52.75 ? 33 HOH A O 1 HETATM 354 O O . HOH E 4 . ? 28.658 -2.730 10.428 1.00 66.64 ? 34 HOH A O 1 HETATM 355 O O . HOH E 4 . ? 26.495 -4.077 11.153 1.00 63.58 ? 35 HOH A O 1 HETATM 356 O O . HOH E 4 . ? 23.479 -6.267 5.290 1.00 60.24 ? 101 HOH A O 1 HETATM 357 O O . HOH E 4 . ? 21.905 -3.608 8.234 1.00 64.53 ? 102 HOH A O 1 HETATM 358 O O . HOH E 4 . ? 24.084 -5.532 8.207 1.00 64.23 ? 103 HOH A O 1 HETATM 359 O O . HOH E 4 . ? 24.050 -3.337 6.115 1.00 62.75 ? 104 HOH A O 1 HETATM 360 O O . HOH E 4 . ? 21.269 -6.334 7.383 1.00 65.50 ? 105 HOH A O 1 HETATM 361 O O . HOH E 4 . ? 21.376 -4.247 5.166 1.00 64.15 ? 106 HOH A O 1 HETATM 362 O O . HOH E 4 . ? 20.603 -11.540 8.832 1.00 59.98 ? 107 HOH A O 1 HETATM 363 O O . HOH E 4 . ? 19.365 -17.636 -0.159 1.00 69.05 ? 108 HOH A O 1 HETATM 364 O O . HOH E 4 . ? 16.528 10.102 15.363 1.00 60.42 ? 109 HOH A O 1 HETATM 365 O O . HOH E 4 . ? 18.123 11.136 13.492 1.00 60.33 ? 110 HOH A O 1 HETATM 366 O O . HOH E 4 . ? 15.612 -13.288 8.847 1.00 65.01 ? 111 HOH A O 1 HETATM 367 O O . HOH E 4 . ? 22.726 -1.490 12.747 0.50 42.75 ? 201 HOH A O 1 HETATM 368 O O . HOH E 4 . ? 21.216 1.539 10.043 0.50 40.59 ? 202 HOH A O 1 HETATM 369 O O . HOH E 4 . ? 23.760 -0.183 10.190 0.50 40.47 ? 203 HOH A O 1 HETATM 370 O O . HOH E 4 . ? 22.957 1.570 12.522 0.50 42.11 ? 204 HOH A O 1 HETATM 371 O O . HOH E 4 . ? 20.932 -1.537 10.300 0.50 39.30 ? 205 HOH A O 1 HETATM 372 O O . HOH E 4 . ? 20.184 0.350 12.586 0.50 43.09 ? 206 HOH A O 1 HETATM 373 O O . HOH F 4 . ? 13.854 3.325 -6.216 1.00 67.20 ? 9 HOH B O 1 HETATM 374 O O . HOH F 4 . ? 18.411 -8.590 -5.967 1.00 61.06 ? 10 HOH B O 1 HETATM 375 O O . HOH F 4 . ? 21.472 -0.428 -11.087 1.00 76.16 ? 11 HOH B O 1 HETATM 376 O O . HOH F 4 . ? 23.030 -15.941 -1.428 1.00 83.75 ? 12 HOH B O 1 HETATM 377 O O . HOH F 4 . ? 9.871 -0.674 10.386 1.00 80.24 ? 13 HOH B O 1 HETATM 378 O O . HOH F 4 . ? 17.245 -6.725 -5.078 1.00 61.55 ? 14 HOH B O 1 HETATM 379 O O . HOH F 4 . ? 14.689 -5.890 6.561 1.00 72.44 ? 15 HOH B O 1 HETATM 380 O O . HOH F 4 . ? 13.796 -2.861 0.186 1.00 69.00 ? 16 HOH B O 1 HETATM 381 O O . HOH F 4 . ? 18.670 3.890 -6.997 1.00 65.80 ? 17 HOH B O 1 HETATM 382 O O . HOH F 4 . ? 14.255 -6.228 -3.792 1.00 79.83 ? 18 HOH B O 1 HETATM 383 O O . HOH F 4 . ? 10.995 -2.723 -3.119 1.00 68.80 ? 19 HOH B O 1 HETATM 384 O O . HOH F 4 . ? 16.349 -8.275 -3.709 1.00 67.08 ? 21 HOH B O 1 HETATM 385 O O . HOH F 4 . ? 16.765 -10.374 -7.709 1.00 55.87 ? 26 HOH B O 1 HETATM 386 O O . HOH F 4 . ? 16.074 -7.124 4.683 1.00 73.39 ? 27 HOH B O 1 HETATM 387 O O . HOH F 4 . ? 9.144 -0.399 -1.672 1.00 75.53 ? 29 HOH B O 1 HETATM 388 O O . HOH F 4 . ? 14.461 3.331 5.376 1.00 71.63 ? 30 HOH B O 1 HETATM 389 O O . HOH F 4 . ? 12.821 -7.598 6.129 1.00 67.54 ? 31 HOH B O 1 HETATM 390 O O . HOH F 4 . ? 16.027 -7.549 7.297 1.00 72.54 ? 32 HOH B O 1 #