0.017699
0.000000
0.000000
0.000000
0.013870
0.000000
0.000000
0.000000
0.012903
0.00000
0.00000
0.00000
Sheriff, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
56.500
72.100
77.500
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C28 H21 F3 N6 O4 S
594.564
6-(2'-(METHYLSULFONYL)BIPHENYL-4-YL)-1-(3-(5-OXO-4,5-DIHYDRO-1H-1,2,4-TRIAZOL-3-YL)PHENYL)-3-(TRIFLUOROMETHYL)-5,6-DIHYDRO-1H-PYRAZOLO[3,4-C]PYRIDIN-7(4H)-ONE
non-polymer
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
Y
205
N
C
Y
206
N
C
Y
207
N
C
Y
208
N
C
Y
209
N
C
Y
210
N
C
Y
211
N
C
Y
212
N
C
Y
213
N
C
Y
214
N
C
Y
215
N
C
Y
216
N
C
Y
217
N
C
Y
218
N
C
Y
219
N
C
Y
220
N
C
Y
221
N
C
Y
222
N
C
Y
223
N
C
Y
224
N
C
Y
225
N
C
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
C
Y
233
N
N
N
234
N
N
Y
235
N
N
N
236
N
N
N
237
N
N
N
238
N
N
N
239
N
O
N
240
N
O
N
241
N
O
N
242
N
O
N
243
N
F
N
244
N
F
N
245
N
F
N
246
N
S
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
N
N
269
S
C
N
270
N
C
N
271
N
O
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
N
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
C
N
299
N
S
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
NA
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
C
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
R
C
N
373
N
O
N
374
N
C
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
N
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
N
423
N
O
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
N
N
437
S
C
N
438
N
C
N
439
N
O
N
440
N
C
N
441
N
C
N
442
N
C
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
Y
194
N
doub
Y
195
N
sing
Y
196
N
sing
Y
197
N
doub
Y
198
N
sing
Y
199
N
doub
Y
200
N
doub
Y
201
N
sing
Y
202
N
sing
Y
203
N
doub
Y
204
N
sing
Y
205
N
doub
Y
206
N
sing
Y
207
N
doub
Y
208
N
doub
Y
209
N
doub
Y
210
N
sing
Y
211
N
sing
Y
212
N
sing
N
213
N
sing
Y
214
N
doub
Y
215
N
sing
N
216
N
sing
Y
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
Y
221
N
sing
N
222
N
sing
Y
223
N
doub
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
Y
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
Y
316
N
doub
Y
317
N
sing
Y
318
N
sing
N
319
N
sing
Y
320
N
doub
N
321
N
sing
Y
322
N
doub
N
323
N
sing
Y
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
Y
385
N
doub
Y
386
N
sing
Y
387
N
sing
N
388
N
sing
Y
389
N
doub
Y
390
N
sing
Y
391
N
sing
N
392
N
sing
Y
393
N
sing
Y
394
N
doub
N
395
N
sing
Y
396
N
doub
N
397
N
sing
Y
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
Y
413
N
doub
Y
414
N
sing
Y
415
N
sing
N
416
N
sing
Y
417
N
doub
N
418
N
sing
Y
419
N
doub
N
420
N
sing
Y
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
20
1373
1377
10.1016/j.bmcl.2010.01.011
20100660
Phenyltriazolinones as potent factor Xa inhibitors.
2010
10.2210/pdb3kqc/pdb
pdb_00003kqc
100.000000
1
CCD
2009-06-03
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
1.0809
1.0
X29A
NSLS
1.0809
SYNCHROTRON
NSLS BEAMLINE X29A
26447.104
factor Xa heavy chain
3.4.21.6
residues 235-468 of factor X uncleaved sequence
1
nat
polymer
5589.234
factor Xa light chain
3.4.21.6
residues 127-178 of factor X uncleaved sequence
1
nat
polymer
594.564
6-(2'-(METHYLSULFONYL)BIPHENYL-4-YL)-1-(3-(5-OXO-4,5-DIHYDRO-1H-1,2,4-TRIAZOL-3-YL)PHENYL)-3-(TRIFLUOROMETHYL)-5,6-DIHYDRO-1H-PYRAZOLO[3,4-C]PYRIDIN-7(4H)-ONE
1
syn
non-polymer
22.990
SODIUM ION
2
syn
non-polymer
18.015
water
113
nat
water
no
no
IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF
TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS
SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKT
IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF
TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS
SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKT
A
polypeptide(L)
no
no
KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE
KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE
L
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
PROTEOLYTIC CLEAVAGE PRODUCT
sample
9606
Homo sapiens
human
PROTEOLYTIC CLEAVAGE PRODUCT
sample
9606
Homo sapiens
1
2.46
50.07
VAPOR DIFFUSION, HANGING DROP
5.500000
200 mM NaOAc (pH 5.5), 18% PEG 6000, pH 5.500000, vapor diffusion, hanging drop, temperature 277K, VAPOR DIFFUSION, HANGING DROP
277
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Data collection
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-02-23
1
1
2011-07-13
1
2
2019-07-17
1
3
2023-09-06
_software.contact_author
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2009-11-17
REL
REL
LGK
6-(2'-(METHYLSULFONYL)BIPHENYL-4-YL)-1-(3-(5-OXO-4,5-DIHYDRO-1H-1,2,4-TRIAZOL-3-YL)PHENYL)-3-(TRIFLUOROMETHYL)-5,6-DIHYDRO-1H-PYRAZOLO[3,4-C]PYRIDIN-7(4H)-ONE
NA
SODIUM ION
HOH
water
AUTHORS STATE THAT THE MATERIAL IS PROTEOLYTIC CLEAVAGE PRODUCT. IT IS DIFFICULT TO KNOW EXACTLY WHAT WAS CRYSTALLIZED.
3FFG
PDB entry 3FFG, FACTOR XA
PDB
experimental model
LGK
301
3
LGK
LGK
301
A
NA
302
4
NA
NA
302
A
NA
303
4
NA
NA
303
A
HOH
401
5
HOH
HOH
401
A
HOH
402
5
HOH
HOH
402
A
HOH
403
5
HOH
HOH
403
A
HOH
404
5
HOH
HOH
404
A
HOH
405
5
HOH
HOH
405
A
HOH
406
5
HOH
HOH
406
A
HOH
407
5
HOH
HOH
407
A
HOH
408
5
HOH
HOH
408
A
HOH
409
5
HOH
HOH
409
A
HOH
410
5
HOH
HOH
410
A
HOH
411
5
HOH
HOH
411
A
HOH
412
5
HOH
HOH
412
A
HOH
413
5
HOH
HOH
413
A
HOH
414
5
HOH
HOH
414
A
HOH
415
5
HOH
HOH
415
A
HOH
416
5
HOH
HOH
416
A
HOH
417
5
HOH
HOH
417
A
HOH
418
5
HOH
HOH
418
A
HOH
419
5
HOH
HOH
419
A
HOH
420
5
HOH
HOH
420
A
HOH
421
5
HOH
HOH
421
A
HOH
422
5
HOH
HOH
422
A
HOH
423
5
HOH
HOH
423
A
HOH
424
5
HOH
HOH
424
A
HOH
425
5
HOH
HOH
425
A
HOH
426
5
HOH
HOH
426
A
HOH
427
5
HOH
HOH
427
A
HOH
428
5
HOH
HOH
428
A
HOH
429
5
HOH
HOH
429
A
HOH
430
5
HOH
HOH
430
A
HOH
431
5
HOH
HOH
431
A
HOH
432
5
HOH
HOH
432
A
HOH
433
5
HOH
HOH
433
A
HOH
434
5
HOH
HOH
434
A
HOH
435
5
HOH
HOH
435
A
HOH
436
5
HOH
HOH
436
A
HOH
437
5
HOH
HOH
437
A
HOH
438
5
HOH
HOH
438
A
HOH
439
5
HOH
HOH
439
A
HOH
440
5
HOH
HOH
440
A
HOH
441
5
HOH
HOH
441
A
HOH
442
5
HOH
HOH
442
A
HOH
443
5
HOH
HOH
443
A
HOH
444
5
HOH
HOH
444
A
HOH
445
5
HOH
HOH
445
A
HOH
446
5
HOH
HOH
446
A
HOH
447
5
HOH
HOH
447
A
HOH
448
5
HOH
HOH
448
A
HOH
449
5
HOH
HOH
449
A
HOH
450
5
HOH
HOH
450
A
HOH
451
5
HOH
HOH
451
A
HOH
452
5
HOH
HOH
452
A
HOH
453
5
HOH
HOH
453
A
HOH
454
5
HOH
HOH
454
A
HOH
455
5
HOH
HOH
455
A
HOH
456
5
HOH
HOH
456
A
HOH
457
5
HOH
HOH
457
A
HOH
458
5
HOH
HOH
458
A
HOH
459
5
HOH
HOH
459
A
HOH
460
5
HOH
HOH
460
A
HOH
461
5
HOH
HOH
461
A
HOH
462
5
HOH
HOH
462
A
HOH
463
5
HOH
HOH
463
A
HOH
464
5
HOH
HOH
464
A
HOH
465
5
HOH
HOH
465
A
HOH
466
5
HOH
HOH
466
A
HOH
467
5
HOH
HOH
467
A
HOH
468
5
HOH
HOH
468
A
HOH
469
5
HOH
HOH
469
A
HOH
470
5
HOH
HOH
470
A
HOH
471
5
HOH
HOH
471
A
HOH
472
5
HOH
HOH
472
A
HOH
473
5
HOH
HOH
473
A
HOH
474
5
HOH
HOH
474
A
HOH
475
5
HOH
HOH
475
A
HOH
476
5
HOH
HOH
476
A
HOH
477
5
HOH
HOH
477
A
HOH
478
5
HOH
HOH
478
A
HOH
479
5
HOH
HOH
479
A
HOH
480
5
HOH
HOH
480
A
HOH
481
5
HOH
HOH
481
A
HOH
482
5
HOH
HOH
482
A
HOH
483
5
HOH
HOH
483
A
HOH
484
5
HOH
HOH
484
A
HOH
485
5
HOH
HOH
485
A
HOH
486
5
HOH
HOH
486
A
HOH
487
5
HOH
HOH
487
A
HOH
488
5
HOH
HOH
488
A
HOH
489
5
HOH
HOH
489
A
HOH
401
5
HOH
HOH
401
L
HOH
402
5
HOH
HOH
402
L
HOH
403
5
HOH
HOH
403
L
HOH
404
5
HOH
HOH
404
L
HOH
405
5
HOH
HOH
405
L
HOH
406
5
HOH
HOH
406
L
HOH
407
5
HOH
HOH
407
L
HOH
408
5
HOH
HOH
408
L
HOH
409
5
HOH
HOH
409
L
HOH
410
5
HOH
HOH
410
L
HOH
411
5
HOH
HOH
411
L
HOH
412
5
HOH
HOH
412
L
HOH
413
5
HOH
HOH
413
L
HOH
414
5
HOH
HOH
414
L
HOH
415
5
HOH
HOH
415
L
HOH
416
5
HOH
HOH
416
L
HOH
417
5
HOH
HOH
417
L
HOH
418
5
HOH
HOH
418
L
HOH
419
5
HOH
HOH
419
L
HOH
420
5
HOH
HOH
420
L
HOH
421
5
HOH
HOH
421
L
HOH
422
5
HOH
HOH
422
L
HOH
423
5
HOH
HOH
423
L
HOH
424
5
HOH
HOH
424
L
ILE
16
n
1
ILE
16
A
VAL
17
n
2
VAL
17
A
GLY
18
n
3
GLY
18
A
GLY
19
n
4
GLY
19
A
GLN
20
n
5
GLN
20
A
GLU
21
n
6
GLU
21
A
CYS
22
n
7
CYS
22
A
LYS
23
n
8
LYS
23
A
ASP
24
n
9
ASP
24
A
GLY
25
n
10
GLY
25
A
GLU
26
n
11
GLU
26
A
CYS
27
n
12
CYS
27
A
PRO
28
n
13
PRO
28
A
TRP
29
n
14
TRP
29
A
GLN
30
n
15
GLN
30
A
ALA
31
n
16
ALA
31
A
LEU
32
n
17
LEU
32
A
LEU
33
n
18
LEU
33
A
ILE
34
n
19
ILE
34
A
ASN
35
n
20
ASN
35
A
GLU
36
n
21
GLU
36
A
GLU
37
n
22
GLU
37
A
ASN
38
n
23
ASN
38
A
GLU
39
n
24
GLU
39
A
GLY
40
n
25
GLY
40
A
PHE
41
n
26
PHE
41
A
CYS
42
n
27
CYS
42
A
GLY
43
n
28
GLY
43
A
GLY
44
n
29
GLY
44
A
THR
45
n
30
THR
45
A
ILE
46
n
31
ILE
46
A
LEU
47
n
32
LEU
47
A
SER
48
n
33
SER
48
A
GLU
49
n
34
GLU
49
A
PHE
50
n
35
PHE
50
A
TYR
51
n
36
TYR
51
A
ILE
52
n
37
ILE
52
A
LEU
53
n
38
LEU
53
A
THR
54
n
39
THR
54
A
ALA
55
n
40
ALA
55
A
ALA
56
n
41
ALA
56
A
HIS
57
n
42
HIS
57
A
CYS
58
n
43
CYS
58
A
LEU
59
n
44
LEU
59
A
TYR
60
n
45
TYR
60
A
GLN
61
n
46
GLN
61
A
ALA
61
n
47
A
ALA
61
A
LYS
62
n
48
LYS
62
A
ARG
63
n
49
ARG
63
A
PHE
64
n
50
PHE
64
A
LYS
65
n
51
LYS
65
A
VAL
66
n
52
VAL
66
A
ARG
67
n
53
ARG
67
A
VAL
68
n
54
VAL
68
A
GLY
69
n
55
GLY
69
A
ASP
70
n
56
ASP
70
A
ARG
71
n
57
ARG
71
A
ASN
72
n
58
ASN
72
A
THR
73
n
59
THR
73
A
GLU
74
n
60
GLU
74
A
GLN
75
n
61
GLN
75
A
GLU
76
n
62
GLU
76
A
GLU
77
n
63
GLU
77
A
GLY
78
n
64
GLY
78
A
GLY
79
n
65
GLY
79
A
GLU
80
n
66
GLU
80
A
ALA
81
n
67
ALA
81
A
VAL
82
n
68
VAL
82
A
HIS
83
n
69
HIS
83
A
GLU
84
n
70
GLU
84
A
VAL
85
n
71
VAL
85
A
GLU
86
n
72
GLU
86
A
VAL
87
n
73
VAL
87
A
VAL
88
n
74
VAL
88
A
ILE
89
n
75
ILE
89
A
LYS
90
n
76
LYS
90
A
HIS
91
n
77
HIS
91
A
ASN
92
n
78
ASN
92
A
ARG
93
n
79
ARG
93
A
PHE
94
n
80
PHE
94
A
THR
95
n
81
THR
95
A
LYS
96
n
82
LYS
96
A
GLU
97
n
83
GLU
97
A
THR
98
n
84
THR
98
A
TYR
99
n
85
TYR
99
A
ASP
100
n
86
ASP
100
A
PHE
101
n
87
PHE
101
A
ASP
102
n
88
ASP
102
A
ILE
103
n
89
ILE
103
A
ALA
104
n
90
ALA
104
A
VAL
105
n
91
VAL
105
A
LEU
106
n
92
LEU
106
A
ARG
107
n
93
ARG
107
A
LEU
108
n
94
LEU
108
A
LYS
109
n
95
LYS
109
A
THR
110
n
96
THR
110
A
PRO
111
n
97
PRO
111
A
ILE
112
n
98
ILE
112
A
THR
113
n
99
THR
113
A
PHE
114
n
100
PHE
114
A
ARG
115
n
101
ARG
115
A
MET
116
n
102
MET
116
A
ASN
117
n
103
ASN
117
A
VAL
118
n
104
VAL
118
A
ALA
119
n
105
ALA
119
A
PRO
120
n
106
PRO
120
A
ALA
121
n
107
ALA
121
A
CYS
122
n
108
CYS
122
A
LEU
123
n
109
LEU
123
A
PRO
124
n
110
PRO
124
A
GLU
124
n
111
A
GLU
124
A
ARG
125
n
112
ARG
125
A
ASP
126
n
113
ASP
126
A
TRP
127
n
114
TRP
127
A
ALA
128
n
115
ALA
128
A
GLU
129
n
116
GLU
129
A
SER
130
n
117
SER
130
A
THR
131
n
118
THR
131
A
LEU
131
n
119
A
LEU
131
A
MET
131
n
120
B
MET
131
A
THR
132
n
121
THR
132
A
GLN
133
n
122
GLN
133
A
LYS
134
n
123
LYS
134
A
THR
135
n
124
THR
135
A
GLY
136
n
125
GLY
136
A
ILE
137
n
126
ILE
137
A
VAL
138
n
127
VAL
138
A
SER
139
n
128
SER
139
A
GLY
140
n
129
GLY
140
A
PHE
141
n
130
PHE
141
A
GLY
142
n
131
GLY
142
A
ARG
143
n
132
ARG
143
A
THR
144
n
133
THR
144
A
HIS
145
n
134
HIS
145
A
GLU
146
n
135
GLU
146
A
LYS
147
n
136
LYS
147
A
GLY
149
n
137
GLY
149
A
ARG
150
n
138
ARG
150
A
GLN
151
n
139
GLN
151
A
SER
152
n
140
SER
152
A
THR
153
n
141
THR
153
A
ARG
154
n
142
ARG
154
A
LEU
155
n
143
LEU
155
A
LYS
156
n
144
LYS
156
A
MET
157
n
145
MET
157
A
LEU
158
n
146
LEU
158
A
GLU
159
n
147
GLU
159
A
VAL
160
n
148
VAL
160
A
PRO
161
n
149
PRO
161
A
TYR
162
n
150
TYR
162
A
VAL
163
n
151
VAL
163
A
ASP
164
n
152
ASP
164
A
ARG
165
n
153
ARG
165
A
ASN
166
n
154
ASN
166
A
SER
167
n
155
SER
167
A
CYS
168
n
156
CYS
168
A
LYS
169
n
157
LYS
169
A
LEU
170
n
158
LEU
170
A
SER
171
n
159
SER
171
A
SER
172
n
160
SER
172
A
SER
173
n
161
SER
173
A
PHE
174
n
162
PHE
174
A
ILE
175
n
163
ILE
175
A
ILE
176
n
164
ILE
176
A
THR
177
n
165
THR
177
A
GLN
178
n
166
GLN
178
A
ASN
179
n
167
ASN
179
A
MET
180
n
168
MET
180
A
PHE
181
n
169
PHE
181
A
CYS
182
n
170
CYS
182
A
ALA
183
n
171
ALA
183
A
GLY
184
n
172
GLY
184
A
TYR
185
n
173
TYR
185
A
ASP
185
n
174
A
ASP
185
A
THR
185
n
175
B
THR
185
A
LYS
186
n
176
LYS
186
A
GLN
187
n
177
GLN
187
A
GLU
188
n
178
GLU
188
A
ASP
189
n
179
ASP
189
A
ALA
190
n
180
ALA
190
A
CYS
191
n
181
CYS
191
A
GLN
192
n
182
GLN
192
A
GLY
193
n
183
GLY
193
A
ASP
194
n
184
ASP
194
A
SER
195
n
185
SER
195
A
GLY
196
n
186
GLY
196
A
GLY
197
n
187
GLY
197
A
PRO
198
n
188
PRO
198
A
HIS
199
n
189
HIS
199
A
VAL
200
n
190
VAL
200
A
THR
201
n
191
THR
201
A
ARG
202
n
192
ARG
202
A
PHE
203
n
193
PHE
203
A
LYS
204
n
194
LYS
204
A
ASP
205
n
195
ASP
205
A
THR
206
n
196
THR
206
A
TYR
207
n
197
TYR
207
A
PHE
208
n
198
PHE
208
A
VAL
209
n
199
VAL
209
A
THR
210
n
200
THR
210
A
GLY
211
n
201
GLY
211
A
ILE
212
n
202
ILE
212
A
VAL
213
n
203
VAL
213
A
SER
214
n
204
SER
214
A
TRP
215
n
205
TRP
215
A
GLY
216
n
206
GLY
216
A
GLU
217
n
207
GLU
217
A
GLY
218
n
208
GLY
218
A
CYS
220
n
209
CYS
220
A
ALA
221
n
210
ALA
221
A
ARG
222
n
211
ARG
222
A
LYS
223
n
212
LYS
223
A
GLY
223
n
213
A
GLY
223
A
LYS
224
n
214
LYS
224
A
TYR
225
n
215
TYR
225
A
GLY
226
n
216
GLY
226
A
ILE
227
n
217
ILE
227
A
TYR
228
n
218
TYR
228
A
THR
229
n
219
THR
229
A
LYS
230
n
220
LYS
230
A
VAL
231
n
221
VAL
231
A
THR
232
n
222
THR
232
A
ALA
233
n
223
ALA
233
A
PHE
234
n
224
PHE
234
A
LEU
235
n
225
LEU
235
A
LYS
236
n
226
LYS
236
A
TRP
237
n
227
TRP
237
A
ILE
238
n
228
ILE
238
A
ASP
239
n
229
ASP
239
A
ARG
240
n
230
ARG
240
A
SER
241
n
231
SER
241
A
MET
242
n
232
MET
242
A
LYS
243
n
233
LYS
243
A
THR
244
n
234
THR
244
A
LYS
87
n
1
LYS
87
L
LEU
88
n
2
LEU
88
L
CYS
89
n
3
CYS
89
L
SER
90
n
4
SER
90
L
LEU
91
n
5
LEU
91
L
ASP
92
n
6
ASP
92
L
ASN
93
n
7
ASN
93
L
GLY
94
n
8
GLY
94
L
ASP
95
n
9
ASP
95
L
CYS
96
n
10
CYS
96
L
ASP
97
n
11
ASP
97
L
GLN
98
n
12
GLN
98
L
PHE
99
n
13
PHE
99
L
CYS
100
n
14
CYS
100
L
HIS
101
n
15
HIS
101
L
GLU
102
n
16
GLU
102
L
GLU
103
n
17
GLU
103
L
GLN
104
n
18
GLN
104
L
ASN
105
n
19
ASN
105
L
SER
106
n
20
SER
106
L
VAL
107
n
21
VAL
107
L
VAL
108
n
22
VAL
108
L
CYS
109
n
23
CYS
109
L
SER
110
n
24
SER
110
L
CYS
111
n
25
CYS
111
L
ALA
112
n
26
ALA
112
L
ARG
113
n
27
ARG
113
L
GLY
114
n
28
GLY
114
L
TYR
115
n
29
TYR
115
L
THR
116
n
30
THR
116
L
LEU
117
n
31
LEU
117
L
ALA
118
n
32
ALA
118
L
ASP
119
n
33
ASP
119
L
ASN
120
n
34
ASN
120
L
GLY
121
n
35
GLY
121
L
LYS
122
n
36
LYS
122
L
ALA
123
n
37
ALA
123
L
CYS
124
n
38
CYS
124
L
ILE
125
n
39
ILE
125
L
PRO
126
n
40
PRO
126
L
THR
127
n
41
THR
127
L
GLY
128
n
42
GLY
128
L
PRO
129
n
43
PRO
129
L
TYR
130
n
44
TYR
130
L
PRO
131
n
45
PRO
131
L
CYS
132
n
46
CYS
132
L
GLY
133
n
47
GLY
133
L
LYS
134
n
48
LYS
134
L
GLN
135
n
49
GLN
135
L
THR
136
n
50
THR
136
L
LEU
137
n
51
LEU
137
L
GLU
138
n
52
GLU
138
L
author_and_software_defined_assembly
PISA
2
dimeric
2060
-36
13060
A
ASP
70
A
OD1
ASP
56
1_555
A
NA
303
E
NA
NA
1_555
A
ASN
72
A
O
ASN
58
1_555
84.1
A
ASP
70
A
OD1
ASP
56
1_555
A
NA
303
E
NA
NA
1_555
A
GLN
75
A
O
GLN
61
1_555
162.3
A
ASN
72
A
O
ASN
58
1_555
A
NA
303
E
NA
NA
1_555
A
GLN
75
A
O
GLN
61
1_555
79.1
A
ASP
70
A
OD1
ASP
56
1_555
A
NA
303
E
NA
NA
1_555
A
GLU
77
A
OE2
GLU
63
1_555
82.4
A
ASN
72
A
O
ASN
58
1_555
A
NA
303
E
NA
NA
1_555
A
GLU
77
A
OE2
GLU
63
1_555
80.2
A
GLN
75
A
O
GLN
61
1_555
A
NA
303
E
NA
NA
1_555
A
GLU
77
A
OE2
GLU
63
1_555
99.9
A
ASP
70
A
OD1
ASP
56
1_555
A
NA
303
E
NA
NA
1_555
A
GLU
80
A
OE2
GLU
66
1_555
105.5
A
ASN
72
A
O
ASN
58
1_555
A
NA
303
E
NA
NA
1_555
A
GLU
80
A
OE2
GLU
66
1_555
170.3
A
GLN
75
A
O
GLN
61
1_555
A
NA
303
E
NA
NA
1_555
A
GLU
80
A
OE2
GLU
66
1_555
91.2
A
GLU
77
A
OE2
GLU
63
1_555
A
NA
303
E
NA
NA
1_555
A
GLU
80
A
OE2
GLU
66
1_555
101.9
A
ASP
70
A
OD1
ASP
56
1_555
A
NA
303
E
NA
NA
1_555
A
GLU
80
A
OE1
GLU
66
1_555
76.3
A
ASN
72
A
O
ASN
58
1_555
A
NA
303
E
NA
NA
1_555
A
GLU
80
A
OE1
GLU
66
1_555
140.8
A
GLN
75
A
O
GLN
61
1_555
A
NA
303
E
NA
NA
1_555
A
GLU
80
A
OE1
GLU
66
1_555
114.0
A
GLU
77
A
OE2
GLU
63
1_555
A
NA
303
E
NA
NA
1_555
A
GLU
80
A
OE1
GLU
66
1_555
129.0
A
GLU
80
A
OE2
GLU
66
1_555
A
NA
303
E
NA
NA
1_555
A
GLU
80
A
OE1
GLU
66
1_555
43.9
A
ASP
70
A
OD1
ASP
56
1_555
A
NA
303
E
NA
NA
1_555
A
HOH
483
F
O
HOH
1_555
86.8
A
ASN
72
A
O
ASN
58
1_555
A
NA
303
E
NA
NA
1_555
A
HOH
483
F
O
HOH
1_555
93.7
A
GLN
75
A
O
GLN
61
1_555
A
NA
303
E
NA
NA
1_555
A
HOH
483
F
O
HOH
1_555
88.8
A
GLU
77
A
OE2
GLU
63
1_555
A
NA
303
E
NA
NA
1_555
A
HOH
483
F
O
HOH
1_555
168.1
A
GLU
80
A
OE2
GLU
66
1_555
A
NA
303
E
NA
NA
1_555
A
HOH
483
F
O
HOH
1_555
85.8
A
GLU
80
A
OE1
GLU
66
1_555
A
NA
303
E
NA
NA
1_555
A
HOH
483
F
O
HOH
1_555
52.1
A
TYR
185
A
O
TYR
173
1_555
A
NA
302
D
NA
NA
1_555
A
ARG
222
A
O
ARG
211
1_555
136.7
A
TYR
185
A
O
TYR
173
1_555
A
NA
302
D
NA
NA
1_555
A
LYS
224
A
O
LYS
214
1_555
91.0
A
ARG
222
A
O
ARG
211
1_555
A
NA
302
D
NA
NA
1_555
A
LYS
224
A
O
LYS
214
1_555
89.7
A
TYR
185
A
O
TYR
173
1_555
A
NA
302
D
NA
NA
1_555
A
HOH
421
F
O
HOH
1_555
137.7
A
ARG
222
A
O
ARG
211
1_555
A
NA
302
D
NA
NA
1_555
A
HOH
421
F
O
HOH
1_555
85.2
A
LYS
224
A
O
LYS
214
1_555
A
NA
302
D
NA
NA
1_555
A
HOH
421
F
O
HOH
1_555
82.6
A
TYR
185
A
O
TYR
173
1_555
A
NA
302
D
NA
NA
1_555
A
HOH
456
F
O
HOH
1_555
71.3
A
ARG
222
A
O
ARG
211
1_555
A
NA
302
D
NA
NA
1_555
A
HOH
456
F
O
HOH
1_555
145.5
A
LYS
224
A
O
LYS
214
1_555
A
NA
302
D
NA
NA
1_555
A
HOH
456
F
O
HOH
1_555
112.9
A
HOH
421
F
O
HOH
1_555
A
NA
302
D
NA
NA
1_555
A
HOH
456
F
O
HOH
1_555
73.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
20
A
N
GLN
5
A
O
MET
157
A
O
MET
145
A
O
VAL
160
A
O
VAL
148
A
N
GLY
136
A
N
GLY
125
A
N
ILE
137
A
N
ILE
126
A
O
VAL
200
A
O
VAL
190
A
N
THR
201
A
N
THR
191
A
O
PHE
208
A
O
PHE
198
A
N
TRP
215
A
N
TRP
205
A
O
ILE
227
A
O
ILE
217
A
O
TYR
228
A
O
TYR
218
A
N
PHE
181
A
N
PHE
169
A
N
LEU
33
A
N
LEU
18
A
O
CYS
42
A
O
CYS
27
A
N
THR
45
A
N
THR
30
A
O
LEU
53
A
O
LEU
38
A
N
ILE
52
A
N
ILE
37
A
O
LEU
106
A
O
LEU
92
A
O
VAL
105
A
O
VAL
91
A
N
ILE
89
A
N
ILE
75
A
O
HIS
83
A
O
HIS
69
A
N
VAL
66
A
N
VAL
52
A
O
ARG
67
A
O
ARG
53
A
N
LEU
32
A
N
LEU
17
L
N
HIS
101
B
N
HIS
15
L
O
VAL
108
B
O
VAL
22
L
N
THR
116
B
N
THR
30
L
O
ILE
125
B
O
ILE
39
1
A
OE1
GLN
20
A
OE1
GLN
5
1
Y
1
A
NE2
GLN
20
A
NE2
GLN
5
1
Y
1
A
CG
LYS
62
A
CG
LYS
48
1
Y
1
A
CD
LYS
62
A
CD
LYS
48
1
Y
1
A
CE
LYS
62
A
CE
LYS
48
1
Y
1
A
NZ
LYS
62
A
NZ
LYS
48
1
Y
1
A
NE
ARG
115
A
NE
ARG
101
1
Y
1
A
CZ
ARG
115
A
CZ
ARG
101
1
Y
1
A
NH1
ARG
115
A
NH1
ARG
101
1
Y
1
A
NH2
ARG
115
A
NH2
ARG
101
1
Y
1
A
CG
LYS
134
A
CG
LYS
123
1
Y
1
A
CD
LYS
134
A
CD
LYS
123
1
Y
1
A
CE
LYS
134
A
CE
LYS
123
1
Y
1
A
NZ
LYS
134
A
NZ
LYS
123
1
Y
1
A
CG
ARG
150
A
CG
ARG
138
1
Y
1
A
CD
ARG
150
A
CD
ARG
138
1
Y
1
A
NE
ARG
150
A
NE
ARG
138
1
Y
1
A
CZ
ARG
150
A
CZ
ARG
138
1
Y
1
A
NH1
ARG
150
A
NH1
ARG
138
1
Y
1
A
NH2
ARG
150
A
NH2
ARG
138
1
Y
A
1
A
CG
ASP
185
A
CG
ASP
174
1
Y
A
1
A
OD1
ASP
185
A
OD1
ASP
174
1
Y
A
1
A
OD2
ASP
185
A
OD2
ASP
174
1
Y
1
A
CD
LYS
223
A
CD
LYS
212
1
Y
1
A
CE
LYS
223
A
CE
LYS
212
1
Y
1
A
NZ
LYS
223
A
NZ
LYS
212
1
Y
1
A
SER
214
-108.78
-62.50
1
A
ALA
221
58.91
19.85
1
L
LEU
88
46.48
-111.90
1
L
GLN
98
-126.82
-114.42
1
L
LYS
122
-127.08
-51.11
1
L
THR
136
-102.51
59.76
109.29
36.302
15.19
-0.152
0.000
0.000
7.596
0.000
-7.444
0.224
0.183
0.186
2.200
30.390
1072
16597
6.460
99.710
1.00
0.50
RANDOM
1
THROUGHOUT
0.00
MR
PDB entry 3FFG, FACTOR XA
0.241
2.200
30.390
113
2369
44
0
2212
0.010
1.11
0.249
0.200
0.203
2.350
186
2790
2976
8
6.250
99.710
36.210
2.200
50.000
3KQC
16770
0.00
0.106
1
23.300
6.700
99.900
0.584
2.20
2.28
4.1
6.80
100.00
refinement
BUSTER
2.9.1
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.005
data reduction
HKL-2000
(DENZO)
data scaling
HKL-2000
(SCALEPACK)
phasing
AMoRE
refinement
Dale E. Tronrud
http://www.uoxray.uoregon.edu/tnt/
TNT
package
Factor xa in complex with the inhibitor 6-(2'- (methylsulfonyl)biphenyl-4-yl)-1-(3-(5-oxo-4,5-dihydro-1h- 1,2,4-triazol-3-yl)phenyl)-3-(trifluoromethyl)-5,6- dihydro-1h-pyrazolo[3,4-c]pyridin-7(4h)-one
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
A
ALA
55
A
ALA
40
HELX_P
A
GLN
61
A
GLN
46
5
1
7
A
GLU
124
A
GLU
111
HELX_P
A
THR
131
A
THR
118
1
2
8
A
A
ASP
164
A
ASP
152
HELX_P
A
SER
172
A
SER
160
1
3
9
A
PHE
234
A
PHE
224
HELX_P
A
THR
244
A
THR
234
1
4
11
L
LYS
87
B
LYS
1
HELX_P
L
CYS
96
B
CYS
10
5
5
10
disulf
2.027
A
CYS
22
A
SG
CYS
7
1_555
A
CYS
27
A
SG
CYS
12
1_555
disulf
2.037
A
CYS
42
A
SG
CYS
27
1_555
A
CYS
58
A
SG
CYS
43
1_555
disulf
2.053
A
CYS
122
A
SG
CYS
108
1_555
L
CYS
132
B
SG
CYS
46
1_555
disulf
2.012
A
CYS
168
A
SG
CYS
156
1_555
A
CYS
182
A
SG
CYS
170
1_555
disulf
2.026
A
CYS
191
A
SG
CYS
181
1_555
A
CYS
220
A
SG
CYS
209
1_555
disulf
2.040
L
CYS
89
B
SG
CYS
3
1_555
L
CYS
100
B
SG
CYS
14
1_555
disulf
2.027
L
CYS
96
B
SG
CYS
10
1_555
L
CYS
109
B
SG
CYS
23
1_555
disulf
2.055
L
CYS
111
B
SG
CYS
25
1_555
L
CYS
124
B
SG
CYS
38
1_555
metalc
2.272
A
ASP
70
A
OD1
ASP
56
1_555
A
NA
303
E
NA
NA
1_555
metalc
2.235
A
ASN
72
A
O
ASN
58
1_555
A
NA
303
E
NA
NA
1_555
metalc
2.414
A
GLN
75
A
O
GLN
61
1_555
A
NA
303
E
NA
NA
1_555
metalc
2.546
A
GLU
77
A
OE2
GLU
63
1_555
A
NA
303
E
NA
NA
1_555
metalc
2.444
A
GLU
80
A
OE2
GLU
66
1_555
A
NA
303
E
NA
NA
1_555
metalc
3.179
A
GLU
80
A
OE1
GLU
66
1_555
A
NA
303
E
NA
NA
1_555
metalc
2.232
A
TYR
185
A
O
TYR
173
1_555
A
NA
302
D
NA
NA
1_555
metalc
2.640
A
ARG
222
A
O
ARG
211
1_555
A
NA
302
D
NA
NA
1_555
metalc
2.235
A
LYS
224
A
O
LYS
214
1_555
A
NA
302
D
NA
NA
1_555
metalc
2.310
A
NA
302
D
NA
NA
1_555
A
HOH
421
F
O
HOH
1_555
metalc
2.892
A
NA
302
D
NA
NA
1_555
A
HOH
456
F
O
HOH
1_555
metalc
2.581
A
NA
303
E
NA
NA
1_555
A
HOH
483
F
O
HOH
1_555
HYDROLASE
GLYCOPROTEIN, SERINE PROTEASE, PLASMA, BLOOD COAGULATION FACTOR, PROTEIN INHIBITOR COMPLEX, CALCIUM- BINDING, BLOOD COAGULATION, CALCIUM, PROTEASE, SECRETED, EGF-like domain, Gamma-carboxyglutamic acid, HYDROLASE
FA10_HUMAN
UNP
1
235
P00742
IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF
TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS
SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKT
FA10_HUMAN
UNP
2
127
P00742
KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE
235
468
3KQC
16
244
P00742
A
1
1
234
127
178
3KQC
87
138
P00742
L
2
1
52
7
7
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLN
20
A
GLN
5
A
GLU
21
A
GLU
6
A
LYS
156
A
LYS
144
A
PRO
161
A
PRO
149
A
THR
135
A
THR
124
A
GLY
140
A
GLY
129
A
PRO
198
A
PRO
188
A
PHE
203
A
PHE
193
A
THR
206
A
THR
196
A
TRP
215
A
TRP
205
A
GLY
226
A
GLY
216
A
LYS
230
A
LYS
220
A
MET
180
A
MET
168
A
ALA
183
A
ALA
171
A
GLN
30
A
GLN
15
A
ILE
34
A
ILE
19
A
GLY
40
A
GLY
25
A
ILE
46
A
ILE
31
A
TYR
51
A
TYR
36
A
THR
54
A
THR
39
A
ALA
104
A
ALA
90
A
LEU
108
A
LEU
94
A
ALA
81
A
ALA
67
A
LYS
90
A
LYS
76
A
LYS
65
A
LYS
51
A
VAL
68
A
VAL
54
A
GLN
30
A
GLN
15
A
ILE
34
A
ILE
19
L
PHE
99
B
PHE
13
L
GLU
103
B
GLU
17
L
SER
106
B
SER
20
L
SER
110
B
SER
24
L
TYR
115
B
TYR
29
L
LEU
117
B
LEU
31
L
CYS
124
B
CYS
38
L
PRO
126
B
PRO
40
BINDING SITE FOR RESIDUE LGK A 301
A
LGK
301
Software
19
BINDING SITE FOR RESIDUE NA A 302
A
NA
302
Software
5
BINDING SITE FOR RESIDUE NA A 303
A
NA
303
Software
6
A
LYS
96
A
LYS
82
19
1_555
A
GLU
97
A
GLU
83
19
1_555
A
THR
98
A
THR
84
19
1_555
A
TYR
99
A
TYR
85
19
1_555
A
ARG
143
A
ARG
132
19
1_555
A
GLU
146
A
GLU
135
19
1_555
A
PHE
174
A
PHE
162
19
1_555
A
ASP
189
A
ASP
179
19
1_555
A
ALA
190
A
ALA
180
19
1_555
A
GLN
192
A
GLN
182
19
1_555
A
SER
195
A
SER
185
19
1_555
A
TRP
215
A
TRP
205
19
1_555
A
GLY
216
A
GLY
206
19
1_555
A
GLY
218
A
GLY
208
19
1_555
A
CYS
220
A
CYS
209
19
1_555
A
ALA
221
A
ALA
210
19
1_555
A
GLY
226
A
GLY
216
19
1_555
A
HOH
421
F
HOH
19
1_555
A
HOH
422
F
HOH
19
1_555
A
TYR
185
A
TYR
173
5
1_555
A
ARG
222
A
ARG
211
5
1_555
A
LYS
224
A
LYS
214
5
1_555
A
HOH
421
F
HOH
5
1_555
A
HOH
456
F
HOH
5
1_555
A
ASP
70
A
ASP
56
6
1_555
A
ASN
72
A
ASN
58
6
1_555
A
GLN
75
A
GLN
61
6
1_555
A
GLU
77
A
GLU
63
6
1_555
A
GLU
80
A
GLU
66
6
1_555
A
HOH
483
F
HOH
6
1_555
19
P 21 21 21