0.010823 0.006248 0.000000 0.000000 0.012497 0.000000 0.000000 0.000000 0.004706 0.00000 0.00000 0.00000 Verdine, G.L. Lee, S.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 92.400 92.400 212.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C10 H13 F N5 O8 P 381.211 n 2-amino-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-7,9-dihydro-1H-purine-6,8-dione DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CA N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N O N 90 N P N 91 N O N 92 N O N 93 N O N 94 N C N 95 R C N 96 N O N 97 S C N 98 N O N 99 N C N 100 R C Y 101 N N Y 102 N C Y 103 N N Y 104 N C Y 105 N C N 106 N N Y 107 N N Y 108 N C Y 109 N N Y 110 N C N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N O N 126 N P N 127 N O N 128 N O N 129 N O N 130 N C N 131 R C N 132 N O N 133 S C N 134 N O N 135 N C N 136 R C N 137 N N N 138 N C N 139 N O N 140 N N N 141 N C N 142 N N N 143 N C N 144 N C N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N P N 161 N O N 162 N O N 163 N O N 164 N C N 165 R C N 166 N O N 167 S C N 168 N O N 169 N C N 170 R C Y 171 N N Y 172 N C Y 173 N N Y 174 N C N 175 N C N 176 N O N 177 N N N 178 N C N 179 N N N 180 N N Y 181 N C N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N O N 197 N P N 198 N O N 199 N O N 200 N O N 201 N C N 202 R C N 203 N O N 204 S C N 205 N O N 206 N C N 207 R C N 208 N N N 209 N C N 210 N O N 211 N N N 212 N C N 213 N O N 214 N C N 215 N C N 216 N C N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N P N 233 N N N 234 N C N 235 N N N 236 N N N 237 N C N 238 N C N 239 N C N 240 N O N 241 N N N 242 N C N 243 N O N 244 N N N 245 R C N 246 S C N 247 N F N 248 R C N 249 N O N 250 R C N 251 N O N 252 N C N 253 N O N 254 N O N 255 N O N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N O N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N N N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N O N 298 N O N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N N N 310 N C N 311 N C N 312 N O N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 N C Y 324 N C Y 325 N N Y 326 N C Y 327 N C Y 328 N N N 329 N O N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N O N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 S C N 348 N C N 349 N C N 350 N C N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N N N 366 S C N 367 N C N 368 N O N 369 N C N 370 N C N 371 N C N 372 N C N 373 N O N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N N N 388 S C N 389 N C N 390 N O N 391 N C N 392 N C N 393 N C N 394 N C N 395 N N N 396 N O N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N N N 413 S C N 414 N C N 415 N O N 416 N C N 417 N C N 418 N S N 419 N C N 420 N O N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N N N 433 S C N 434 N C N 435 N O N 436 N C Y 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N C N 443 N O N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N N N 456 S C N 457 N C N 458 N O N 459 N C N 460 N C N 461 N C N 462 N O N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N N N 473 S C N 474 N C N 475 N O N 476 N C N 477 N O N 478 N O N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N N N 487 S C N 488 N C N 489 N O N 490 R C N 491 N O N 492 N C N 493 N O N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N N N 504 S C N 505 N C N 506 N O N 507 N C Y 508 N C Y 509 N C Y 510 N C Y 511 N N Y 512 N C Y 513 N C Y 514 N C Y 515 N C Y 516 N C N 517 N O N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N N N 531 S C N 532 N C N 533 N O N 534 N C Y 535 N C Y 536 N C Y 537 N C Y 538 N C Y 539 N C Y 540 N C N 541 N O N 542 N O N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N H N 554 N N N 555 S C N 556 N C N 557 N O N 558 N C N 559 N C N 560 N C N 561 N O N 562 N H N 563 N H N 564 N H N 565 N H N 566 N H N 567 N H N 568 N H N 569 N H N 570 N H N 571 N H N 572 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N doub N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N doub N 325 N sing N 326 N sing N 327 N sing N 328 N sing Y 329 N sing Y 330 N doub Y 331 N doub N 332 N sing Y 333 N sing N 334 N sing Y 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N doub N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N doub N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing Y 437 N doub Y 438 N sing Y 439 N sing N 440 N sing Y 441 N doub N 442 N sing Y 443 N doub N 444 N sing Y 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N doub N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N doub N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N doub N 502 N sing N 503 N sing N 504 N sing N 505 N sing Y 506 N doub Y 507 N sing Y 508 N sing N 509 N sing Y 510 N doub Y 511 N sing Y 512 N sing N 513 N sing Y 514 N sing Y 515 N doub N 516 N sing Y 517 N doub N 518 N sing Y 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N doub N 530 N sing N 531 N sing N 532 N sing N 533 N sing Y 534 N doub Y 535 N sing Y 536 N sing N 537 N sing Y 538 N doub N 539 N sing Y 540 N doub N 541 N sing Y 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N doub N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N sing N 564 N sing to be published 0353 Structural investigation of hOGG1 bound to a fluorinated oxoG analog to be published 0353 A Catalytic Checkpoint in Base Excision by the Human 8-Oxoguanine DNA Glycosylase hOGG1 10.2210/pdb3ktu/pdb pdb_00003ktu 100 1 CCD 2008-02-01 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 0.979 1.0 24-ID-C APS 0.979 SYNCHROTRON APS BEAMLINE 24-ID-C 35727.469 N-glycosylase/DNA lyase 3.2.2.-, 4.2.99.18 sequence database residues 12-325 1 man polymer 4016.623 DNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3') 1 syn polymer 3672.369 DNA (5'-D(*GP*TP*CP*CP*AP*(FDG)P*GP*TP*CP*TP*AP*C)-3') 1 syn polymer 40.078 CALCIUM ION 2 syn non-polymer 18.015 water 72 nat water 8-oxoguanine DNA glycosylase, DNA-(apurinic or apyrimidinic site) lyase no no SEFGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRP TPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSCNNIARITGMVERLCQAFGP RLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGT KVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQ SEFGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRP TPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSCNNIARITGMVERLCQAFGP RLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGT KVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQ A polypeptide(L) no no (DG)(DG)(DT)(DA)(DG)(DA)(DC)(DC)(DT)(DG)(DG)(DA)(DC) GGTAGACCTGGAC B polydeoxyribonucleotide no yes (DG)(DT)(DC)(DC)(DA)(FDG)(DG)(DT)(DC)(DT)(DA)(DC) GTCCAXGTCTAC C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample MMH, MUTM, OGG1, OGH1 9606 Homo sapiens 469008 Escherichia coli BL21(DE3)PLYSS plasmid pET30a 1 3.03 59.39 6.0 Calcium Chloride, Sodium Cacodylate, pH 6.0, PEG 8000, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 Calcium Chloride 1 Calcium Chloride 2 Sodium Cacodylate 1 Sodium Cacodylate 2 PEG 8000 1 PEG 8000 2 -13.844 B 2 C 29 1.497 B_DG2:DC29_C 1 3.003 -1.835 -0.225 0.107 -10.989 1 20 B 3 C 28 -0.697 B_DT3:DA28_C 2 -11.473 -1.400 0.177 0.197 -13.644 1 20 B 4 C 27 3.442 B_DA4:DT27_C 3 -13.204 -0.795 0.012 0.038 0.493 1 19 B 5 C 26 1.181 B_DG5:DC26_C 4 -14.029 -0.547 -0.236 -0.210 -2.640 1 20 B 6 C 25 -2.338 B_DA6:DT25_C 5 -8.278 -0.418 0.147 0.275 11.364 1 19 B 7 C 24 -4.873 B_DC7:DG24_C 6 -3.181 0.417 -0.119 0.096 -13.878 1 20 B 9 C 22 0.594 B_DT9:DA22_C 7 -0.718 -0.067 0.126 0.136 2.219 1 B 10 C 21 10.362 B_DG10:DC21_C 8 -0.180 1.229 -0.151 0.558 0.710 1 B 11 C 20 9.110 B_DG11:DC20_C 9 -8.922 0.140 -0.143 0.367 0.864 1 20 B 12 C 19 16.140 B_DA12:DT19_C 10 -11.544 0.399 0.299 -0.244 33.953 B 13 C 18 5.492 B_DC13:DG18_C 11 22.452 -1.982 -0.900 0.667 3.369 36.556 B B 2 3 13.752 C C 29 28 3.424 8.519 -1.009 -0.347 BB_DG2DT3:DA28DC29_CC 1 -5.662 9.141 35.143 -1.799 0.781 3.509 46.722 B B 3 4 -8.709 C C 28 27 3.686 -6.881 -0.028 0.961 BB_DT3DA4:DT27DA28_CC 2 2.749 -3.480 46.163 1.846 0.289 2.950 31.748 B B 4 5 14.638 C C 27 26 3.000 7.927 -0.439 0.175 BB_DA4DG5:DC26DT27_CC 3 0.197 -0.364 30.766 -1.025 0.836 3.345 38.357 B B 5 6 8.578 C C 26 25 3.306 5.591 -0.602 0.135 BB_DG5DA6:DT25DC26_CC 4 -6.554 10.055 37.412 -0.514 0.072 3.042 36.037 B B 6 7 -1.804 C C 25 24 3.033 -1.115 0.095 -0.327 BB_DA6DC7:DG24DT25_CC 5 2.295 -3.713 35.949 -0.381 0.148 2.993 42.055 B B 9 10 -3.953 C C 22 21 3.126 -2.834 0.520 1.671 BB_DT9DG10:DC21DA22_CC 6 -1.449 2.022 41.940 2.604 -0.865 3.310 32.770 B B 10 11 13.699 C C 21 20 3.289 7.661 -0.465 0.445 BB_DG10DG11:DC20DC21_CC 7 -0.464 0.830 31.883 -0.561 0.743 3.114 39.892 B B 11 12 3.686 C C 20 19 3.200 2.508 0.232 -0.511 BB_DG11DA12:DT19DC20_CC 8 -4.860 7.143 39.530 -1.029 -0.884 3.073 35.756 B B 12 13 -31.574 C C 19 18 3.384 -18.423 0.529 -0.225 BB_DA12DC13:DG18DT19_CC 9 5.439 -9.322 30.301 2.491 -0.017 pdbx_entity_src_syn software database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Refinement description Source and taxonomy Database references Derived calculations Data collection Refinement description 1 0 2010-07-14 1 1 2011-07-13 1 2 2017-11-01 1 3 2021-10-13 1 4 2023-09-06 _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.organism_scientific _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id HOGG1 disulphide cross-linked to undamaged DNA HOGG1 COMPLEXED WITH OXOG CONTAINING DNA RCSB Y RCSB 2009-11-26 REL REL CA CALCIUM ION HOH water SYNTHETIC DNA 32630 synthetic construct sample SYNTHETIC DNA 32630 synthetic construct sample 1EBM PDB ENTRY 1EBM PDB experimental model CA 2 4 CA CA 2 A CA 1 4 CA CA 1 C HOH 1 5 HOH HOH 1 A HOH 3 5 HOH HOH 3 A HOH 4 5 HOH HOH 4 A HOH 5 5 HOH HOH 5 A HOH 6 5 HOH HOH 6 A HOH 7 5 HOH HOH 7 A HOH 326 5 HOH HOH 326 A HOH 327 5 HOH HOH 327 A HOH 328 5 HOH HOH 328 A HOH 329 5 HOH HOH 329 A HOH 330 5 HOH HOH 330 A HOH 331 5 HOH HOH 331 A HOH 332 5 HOH HOH 332 A HOH 333 5 HOH HOH 333 A HOH 334 5 HOH HOH 334 A HOH 335 5 HOH HOH 335 A HOH 336 5 HOH HOH 336 A HOH 337 5 HOH HOH 337 A HOH 338 5 HOH HOH 338 A HOH 339 5 HOH HOH 339 A HOH 340 5 HOH HOH 340 A HOH 341 5 HOH HOH 341 A HOH 342 5 HOH HOH 342 A HOH 343 5 HOH HOH 343 A HOH 344 5 HOH HOH 344 A HOH 345 5 HOH HOH 345 A HOH 346 5 HOH HOH 346 A HOH 347 5 HOH HOH 347 A HOH 348 5 HOH HOH 348 A HOH 349 5 HOH HOH 349 A HOH 350 5 HOH HOH 350 A HOH 351 5 HOH HOH 351 A HOH 352 5 HOH HOH 352 A HOH 353 5 HOH HOH 353 A HOH 354 5 HOH HOH 354 A HOH 355 5 HOH HOH 355 A HOH 356 5 HOH HOH 356 A HOH 357 5 HOH HOH 357 A HOH 358 5 HOH HOH 358 A HOH 359 5 HOH HOH 359 A HOH 360 5 HOH HOH 360 A HOH 361 5 HOH HOH 361 A HOH 362 5 HOH HOH 362 A HOH 363 5 HOH HOH 363 A HOH 364 5 HOH HOH 364 A HOH 365 5 HOH HOH 365 A HOH 366 5 HOH HOH 366 A HOH 367 5 HOH HOH 367 A HOH 368 5 HOH HOH 368 A HOH 369 5 HOH HOH 369 A HOH 370 5 HOH HOH 370 A HOH 371 5 HOH HOH 371 A HOH 372 5 HOH HOH 372 A HOH 373 5 HOH HOH 373 A HOH 374 5 HOH HOH 374 A HOH 375 5 HOH HOH 375 A HOH 376 5 HOH HOH 376 A HOH 377 5 HOH HOH 377 A HOH 378 5 HOH HOH 378 A HOH 379 5 HOH HOH 379 A HOH 380 5 HOH HOH 380 A HOH 381 5 HOH HOH 381 A HOH 382 5 HOH HOH 382 A HOH 383 5 HOH HOH 383 A HOH 384 5 HOH HOH 384 A HOH 385 5 HOH HOH 385 A HOH 386 5 HOH HOH 386 A HOH 387 5 HOH HOH 387 A HOH 388 5 HOH HOH 388 A HOH 389 5 HOH HOH 389 A HOH 55 5 HOH HOH 55 C HOH 109 5 HOH HOH 109 C SER 9 n 1 SER 9 A GLU 10 n 2 GLU 10 A PHE 11 n 3 PHE 11 A GLY 12 n 4 GLY 12 A HIS 13 n 5 HIS 13 A ARG 14 n 6 ARG 14 A THR 15 n 7 THR 15 A LEU 16 n 8 LEU 16 A ALA 17 n 9 ALA 17 A SER 18 n 10 SER 18 A THR 19 n 11 THR 19 A PRO 20 n 12 PRO 20 A ALA 21 n 13 ALA 21 A LEU 22 n 14 LEU 22 A TRP 23 n 15 TRP 23 A ALA 24 n 16 ALA 24 A SER 25 n 17 SER 25 A ILE 26 n 18 ILE 26 A PRO 27 n 19 PRO 27 A CYS 28 n 20 CYS 28 A PRO 29 n 21 PRO 29 A ARG 30 n 22 ARG 30 A SER 31 n 23 SER 31 A GLU 32 n 24 GLU 32 A LEU 33 n 25 LEU 33 A ARG 34 n 26 ARG 34 A LEU 35 n 27 LEU 35 A ASP 36 n 28 ASP 36 A LEU 37 n 29 LEU 37 A VAL 38 n 30 VAL 38 A LEU 39 n 31 LEU 39 A PRO 40 n 32 PRO 40 A SER 41 n 33 SER 41 A GLY 42 n 34 GLY 42 A GLN 43 n 35 GLN 43 A SER 44 n 36 SER 44 A PHE 45 n 37 PHE 45 A ARG 46 n 38 ARG 46 A TRP 47 n 39 TRP 47 A ARG 48 n 40 ARG 48 A GLU 49 n 41 GLU 49 A GLN 50 n 42 GLN 50 A SER 51 n 43 SER 51 A PRO 52 n 44 PRO 52 A ALA 53 n 45 ALA 53 A HIS 54 n 46 HIS 54 A TRP 55 n 47 TRP 55 A SER 56 n 48 SER 56 A GLY 57 n 49 GLY 57 A VAL 58 n 50 VAL 58 A LEU 59 n 51 LEU 59 A ALA 60 n 52 ALA 60 A ASP 61 n 53 ASP 61 A GLN 62 n 54 GLN 62 A VAL 63 n 55 VAL 63 A TRP 64 n 56 TRP 64 A THR 65 n 57 THR 65 A LEU 66 n 58 LEU 66 A THR 67 n 59 THR 67 A GLN 68 n 60 GLN 68 A THR 69 n 61 THR 69 A GLU 70 n 62 GLU 70 A GLU 71 n 63 GLU 71 A GLN 72 n 64 GLN 72 A LEU 73 n 65 LEU 73 A HIS 74 n 66 HIS 74 A CYS 75 n 67 CYS 75 A THR 76 n 68 THR 76 A VAL 77 n 69 VAL 77 A TYR 78 n 70 TYR 78 A ARG 79 n 71 ARG 79 A n 72 80 A n 73 81 A n 74 82 A SER 83 n 75 SER 83 A GLN 84 n 76 GLN 84 A ALA 85 n 77 ALA 85 A SER 86 n 78 SER 86 A ARG 87 n 79 ARG 87 A PRO 88 n 80 PRO 88 A THR 89 n 81 THR 89 A PRO 90 n 82 PRO 90 A ASP 91 n 83 ASP 91 A GLU 92 n 84 GLU 92 A LEU 93 n 85 LEU 93 A GLU 94 n 86 GLU 94 A ALA 95 n 87 ALA 95 A VAL 96 n 88 VAL 96 A ARG 97 n 89 ARG 97 A LYS 98 n 90 LYS 98 A TYR 99 n 91 TYR 99 A PHE 100 n 92 PHE 100 A GLN 101 n 93 GLN 101 A LEU 102 n 94 LEU 102 A ASP 103 n 95 ASP 103 A VAL 104 n 96 VAL 104 A THR 105 n 97 THR 105 A LEU 106 n 98 LEU 106 A ALA 107 n 99 ALA 107 A GLN 108 n 100 GLN 108 A LEU 109 n 101 LEU 109 A TYR 110 n 102 TYR 110 A HIS 111 n 103 HIS 111 A HIS 112 n 104 HIS 112 A TRP 113 n 105 TRP 113 A GLY 114 n 106 GLY 114 A SER 115 n 107 SER 115 A VAL 116 n 108 VAL 116 A ASP 117 n 109 ASP 117 A SER 118 n 110 SER 118 A HIS 119 n 111 HIS 119 A PHE 120 n 112 PHE 120 A GLN 121 n 113 GLN 121 A GLU 122 n 114 GLU 122 A VAL 123 n 115 VAL 123 A ALA 124 n 116 ALA 124 A GLN 125 n 117 GLN 125 A LYS 126 n 118 LYS 126 A PHE 127 n 119 PHE 127 A GLN 128 n 120 GLN 128 A GLY 129 n 121 GLY 129 A VAL 130 n 122 VAL 130 A ARG 131 n 123 ARG 131 A LEU 132 n 124 LEU 132 A LEU 133 n 125 LEU 133 A ARG 134 n 126 ARG 134 A GLN 135 n 127 GLN 135 A ASP 136 n 128 ASP 136 A PRO 137 n 129 PRO 137 A ILE 138 n 130 ILE 138 A GLU 139 n 131 GLU 139 A CYS 140 n 132 CYS 140 A LEU 141 n 133 LEU 141 A PHE 142 n 134 PHE 142 A SER 143 n 135 SER 143 A PHE 144 n 136 PHE 144 A ILE 145 n 137 ILE 145 A CYS 146 n 138 CYS 146 A SER 147 n 139 SER 147 A SER 148 n 140 SER 148 A CYS 149 n 141 CYS 149 A ASN 150 n 142 ASN 150 A ASN 151 n 143 ASN 151 A ILE 152 n 144 ILE 152 A ALA 153 n 145 ALA 153 A ARG 154 n 146 ARG 154 A ILE 155 n 147 ILE 155 A THR 156 n 148 THR 156 A GLY 157 n 149 GLY 157 A MET 158 n 150 MET 158 A VAL 159 n 151 VAL 159 A GLU 160 n 152 GLU 160 A ARG 161 n 153 ARG 161 A LEU 162 n 154 LEU 162 A CYS 163 n 155 CYS 163 A GLN 164 n 156 GLN 164 A ALA 165 n 157 ALA 165 A PHE 166 n 158 PHE 166 A GLY 167 n 159 GLY 167 A PRO 168 n 160 PRO 168 A ARG 169 n 161 ARG 169 A LEU 170 n 162 LEU 170 A ILE 171 n 163 ILE 171 A GLN 172 n 164 GLN 172 A LEU 173 n 165 LEU 173 A ASP 174 n 166 ASP 174 A ASP 175 n 167 ASP 175 A VAL 176 n 168 VAL 176 A THR 177 n 169 THR 177 A TYR 178 n 170 TYR 178 A HIS 179 n 171 HIS 179 A GLY 180 n 172 GLY 180 A PHE 181 n 173 PHE 181 A PRO 182 n 174 PRO 182 A SER 183 n 175 SER 183 A LEU 184 n 176 LEU 184 A GLN 185 n 177 GLN 185 A ALA 186 n 178 ALA 186 A LEU 187 n 179 LEU 187 A ALA 188 n 180 ALA 188 A GLY 189 n 181 GLY 189 A PRO 190 n 182 PRO 190 A GLU 191 n 183 GLU 191 A VAL 192 n 184 VAL 192 A GLU 193 n 185 GLU 193 A ALA 194 n 186 ALA 194 A HIS 195 n 187 HIS 195 A LEU 196 n 188 LEU 196 A ARG 197 n 189 ARG 197 A LYS 198 n 190 LYS 198 A LEU 199 n 191 LEU 199 A GLY 200 n 192 GLY 200 A LEU 201 n 193 LEU 201 A GLY 202 n 194 GLY 202 A TYR 203 n 195 TYR 203 A ARG 204 n 196 ARG 204 A ALA 205 n 197 ALA 205 A ARG 206 n 198 ARG 206 A TYR 207 n 199 TYR 207 A VAL 208 n 200 VAL 208 A SER 209 n 201 SER 209 A ALA 210 n 202 ALA 210 A SER 211 n 203 SER 211 A ALA 212 n 204 ALA 212 A ARG 213 n 205 ARG 213 A ALA 214 n 206 ALA 214 A ILE 215 n 207 ILE 215 A LEU 216 n 208 LEU 216 A GLU 217 n 209 GLU 217 A GLU 218 n 210 GLU 218 A GLN 219 n 211 GLN 219 A GLY 220 n 212 GLY 220 A GLY 221 n 213 GLY 221 A LEU 222 n 214 LEU 222 A ALA 223 n 215 ALA 223 A TRP 224 n 216 TRP 224 A LEU 225 n 217 LEU 225 A GLN 226 n 218 GLN 226 A GLN 227 n 219 GLN 227 A LEU 228 n 220 LEU 228 A ARG 229 n 221 ARG 229 A GLU 230 n 222 GLU 230 A SER 231 n 223 SER 231 A SER 232 n 224 SER 232 A TYR 233 n 225 TYR 233 A GLU 234 n 226 GLU 234 A GLU 235 n 227 GLU 235 A ALA 236 n 228 ALA 236 A HIS 237 n 229 HIS 237 A LYS 238 n 230 LYS 238 A ALA 239 n 231 ALA 239 A LEU 240 n 232 LEU 240 A CYS 241 n 233 CYS 241 A ILE 242 n 234 ILE 242 A LEU 243 n 235 LEU 243 A PRO 244 n 236 PRO 244 A GLY 245 n 237 GLY 245 A VAL 246 n 238 VAL 246 A GLY 247 n 239 GLY 247 A THR 248 n 240 THR 248 A LYS 249 n 241 LYS 249 A VAL 250 n 242 VAL 250 A ALA 251 n 243 ALA 251 A ASP 252 n 244 ASP 252 A CYS 253 n 245 CYS 253 A ILE 254 n 246 ILE 254 A CYS 255 n 247 CYS 255 A LEU 256 n 248 LEU 256 A MET 257 n 249 MET 257 A ALA 258 n 250 ALA 258 A LEU 259 n 251 LEU 259 A ASP 260 n 252 ASP 260 A LYS 261 n 253 LYS 261 A PRO 262 n 254 PRO 262 A GLN 263 n 255 GLN 263 A ALA 264 n 256 ALA 264 A VAL 265 n 257 VAL 265 A PRO 266 n 258 PRO 266 A VAL 267 n 259 VAL 267 A ASP 268 n 260 ASP 268 A VAL 269 n 261 VAL 269 A HIS 270 n 262 HIS 270 A MET 271 n 263 MET 271 A TRP 272 n 264 TRP 272 A HIS 273 n 265 HIS 273 A ILE 274 n 266 ILE 274 A ALA 275 n 267 ALA 275 A GLN 276 n 268 GLN 276 A ARG 277 n 269 ARG 277 A ASP 278 n 270 ASP 278 A TYR 279 n 271 TYR 279 A SER 280 n 272 SER 280 A TRP 281 n 273 TRP 281 A HIS 282 n 274 HIS 282 A PRO 283 n 275 PRO 283 A THR 284 n 276 THR 284 A THR 285 n 277 THR 285 A SER 286 n 278 SER 286 A GLN 287 n 279 GLN 287 A ALA 288 n 280 ALA 288 A LYS 289 n 281 LYS 289 A GLY 290 n 282 GLY 290 A PRO 291 n 283 PRO 291 A SER 292 n 284 SER 292 A PRO 293 n 285 PRO 293 A GLN 294 n 286 GLN 294 A THR 295 n 287 THR 295 A ASN 296 n 288 ASN 296 A LYS 297 n 289 LYS 297 A GLU 298 n 290 GLU 298 A LEU 299 n 291 LEU 299 A GLY 300 n 292 GLY 300 A ASN 301 n 293 ASN 301 A PHE 302 n 294 PHE 302 A PHE 303 n 295 PHE 303 A ARG 304 n 296 ARG 304 A SER 305 n 297 SER 305 A LEU 306 n 298 LEU 306 A TRP 307 n 299 TRP 307 A GLY 308 n 300 GLY 308 A PRO 309 n 301 PRO 309 A TYR 310 n 302 TYR 310 A ALA 311 n 303 ALA 311 A GLY 312 n 304 GLY 312 A TRP 313 n 305 TRP 313 A ALA 314 n 306 ALA 314 A GLN 315 n 307 GLN 315 A ALA 316 n 308 ALA 316 A VAL 317 n 309 VAL 317 A LEU 318 n 310 LEU 318 A PHE 319 n 311 PHE 319 A SER 320 n 312 SER 320 A ALA 321 n 313 ALA 321 A ASP 322 n 314 ASP 322 A LEU 323 n 315 LEU 323 A ARG 324 n 316 ARG 324 A GLN 325 n 317 GLN 325 A DG 1 n 1 DG 1 B DG 2 n 2 DG 2 B DT 3 n 3 DT 3 B DA 4 n 4 DA 4 B DG 5 n 5 DG 5 B DA 6 n 6 DA 6 B DC 7 n 7 DC 7 B DC 8 n 8 DC 8 B DT 9 n 9 DT 9 B DG 10 n 10 DG 10 B DG 11 n 11 DG 11 B DA 12 n 12 DA 12 B DC 13 n 13 DC 13 B DG 18 n 1 DG 18 C DT 19 n 2 DT 19 C DC 20 n 3 DC 20 C DC 21 n 4 DC 21 C DA 22 n 5 DA 22 C FDG 23 n 6 FDG 23 C DG 24 n 7 DG 24 C DT 25 n 8 DT 25 C DC 26 n 9 DC 26 C DT 27 n 10 DT 27 C DA 28 n 11 DA 28 C DC 29 n 12 DC 29 C author_and_software_defined_assembly PISA 3 trimeric 3950 -44 17130 A CYS 241 A O CYS 233 1_555 A CA 2 D CA CA 1_555 A LEU 243 A O LEU 235 1_555 95.8 A CYS 241 A O CYS 233 1_555 A CA 2 D CA CA 1_555 A VAL 246 A O VAL 238 1_555 88.8 A LEU 243 A O LEU 235 1_555 A CA 2 D CA CA 1_555 A VAL 246 A O VAL 238 1_555 82.4 A CYS 241 A O CYS 233 1_555 A CA 2 D CA CA 1_555 C DC 26 C OP1 DC 9 1_555 173.7 A LEU 243 A O LEU 235 1_555 A CA 2 D CA CA 1_555 C DC 26 C OP1 DC 9 1_555 77.9 A VAL 246 A O VAL 238 1_555 A CA 2 D CA CA 1_555 C DC 26 C OP1 DC 9 1_555 91.4 C FDG 23 C FDG 6 DG 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ALA 24 A N ALA 16 A O CYS 75 A O CYS 67 A O HIS 74 A O HIS 66 A N THR 67 A N THR 59 A O GLN 62 A O GLN 54 A N LEU 59 A N LEU 51 A O SER 56 A O SER 48 A N ARG 48 A N ARG 40 A N LEU 170 A N LEU 162 A O TYR 178 A O TYR 170 1 A CG GLN 125 A CG GLN 117 1 Y 1 A CD GLN 125 A CD GLN 117 1 Y 1 A OE1 GLN 125 A OE1 GLN 117 1 Y 1 A NE2 GLN 125 A NE2 GLN 117 1 Y 1 A CG LYS 126 A CG LYS 118 1 Y 1 A CD LYS 126 A CD LYS 118 1 Y 1 A CE LYS 126 A CE LYS 118 1 Y 1 A NZ LYS 126 A NZ LYS 118 1 Y 1 A CG GLN 325 A CG GLN 317 1 Y 1 A CD GLN 325 A CD GLN 317 1 Y 1 A OE1 GLN 325 A OE1 GLN 317 1 Y 1 A NE2 GLN 325 A NE2 GLN 317 1 Y 1 A GLY 80 A GLY 72 1 Y 1 A ASP 81 A ASP 73 1 Y 1 A LYS 82 A LYS 74 1 Y 1 9.29 1.50 119.30 128.59 A A A C N CA GLY PRO PRO 308 309 309 Y 1 A CYS 28 -171.46 108.96 1 A CYS 149 33.38 53.56 1 A LEU 170 -103.56 -144.30 1 A ASP 174 55.05 -131.57 1 A GLU 218 -143.68 -31.99 1 A ALA 258 -140.42 -10.79 1 A THR 284 -105.74 -70.10 1 A ALA 288 -45.96 151.73 PROTEIN_REP.PARAM DNA-RNA_REP.PARAM WATER_REP.PARAM ION.PARAM FOG_PAR.TXT 58.94 4.66600 0.00000 0.00000 4.66600 0.00000 -9.3330 0.257 0.225 0.225 2.30 25.21 2316 23379 9.400 94.7 1.00 1.00 1 0.000 MOLECULAR REPLACEMENT PDB ENTRY 1EBM 42.65 2.30 25.21 72 3069 2 510 2485 1.351 1.500 2.198 2.000 2.012 2.000 3.028 2.500 2.300 50.000 3KTU 24522 0.11200 1 14.3000 9.200 99.6 0.39700 2.30 2.38 9.50 100.0 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns-online.org/ CNS package data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.005 phasing CNS Structure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNA 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 5 N N A THR 19 A THR 11 HELX_P A TRP 23 A TRP 15 5 1 5 A ARG 34 A ARG 26 HELX_P A LEU 39 A LEU 31 1 2 6 A THR 89 A THR 81 HELX_P A PHE 100 A PHE 92 1 3 12 A THR 105 A THR 97 HELX_P A ASP 117 A ASP 109 1 4 13 A ASP 136 A ASP 128 HELX_P A CYS 146 A CYS 138 1 6 11 A ASN 151 A ASN 143 HELX_P A GLY 167 A GLY 159 1 7 17 A SER 183 A SER 175 HELX_P A ALA 188 A ALA 180 1 8 6 A GLU 191 A GLU 183 HELX_P A LEU 199 A LEU 191 1 9 9 A TYR 203 A TYR 195 HELX_P A GLU 218 A GLU 210 1 10 16 A GLY 221 A GLY 213 HELX_P A GLN 227 A GLN 219 1 11 7 A LEU 228 A LEU 220 HELX_P A SER 231 A SER 223 5 12 4 A SER 232 A SER 224 HELX_P A CYS 241 A CYS 233 1 13 10 A GLY 247 A GLY 239 HELX_P A LEU 259 A LEU 251 1 14 13 A ASP 268 A ASP 260 HELX_P A SER 280 A SER 272 1 15 13 A SER 292 A SER 284 HELX_P A GLY 308 A GLY 300 1 16 17 A TYR 310 A TYR 302 HELX_P A ARG 324 A ARG 316 1 17 15 covale 1.626 both C DA 22 C O3' DA 5 1_555 C FDG 23 C P FDG 6 1_555 covale 1.615 both C FDG 23 C O3' FDG 6 1_555 C DG 24 C P DG 7 1_555 metalc 2.580 A CA 2 D CA CA 1_555 A CYS 241 A O CYS 233 1_555 metalc 2.830 A CA 2 D CA CA 1_555 A LEU 243 A O LEU 235 1_555 metalc 2.839 A CA 2 D CA CA 1_555 A VAL 246 A O VAL 238 1_555 metalc 2.644 A CA 2 D CA CA 1_555 C DC 26 C OP1 DC 9 1_555 metalc 2.907 C CA 1 E CA CA 1_555 C DG 24 C OP1 DG 7 1_555 hydrog DG-DC PAIR B DG 2 B N1 DG 2 1_555 C DC 29 C O2 DC 12 1_555 hydrog WATSON-CRICK B DT 3 B N3 DT 3 1_555 C DA 28 C N1 DA 11 1_555 hydrog WATSON-CRICK B DT 3 B O4 DT 3 1_555 C DA 28 C N6 DA 11 1_555 hydrog WATSON-CRICK B DA 4 B N1 DA 4 1_555 C DT 27 C N3 DT 10 1_555 hydrog WATSON-CRICK B DA 4 B N6 DA 4 1_555 C DT 27 C O4 DT 10 1_555 hydrog WATSON-CRICK B DG 5 B N1 DG 5 1_555 C DC 26 C N3 DC 9 1_555 hydrog WATSON-CRICK B DG 5 B N2 DG 5 1_555 C DC 26 C O2 DC 9 1_555 hydrog WATSON-CRICK B DG 5 B O6 DG 5 1_555 C DC 26 C N4 DC 9 1_555 hydrog WATSON-CRICK B DA 6 B N1 DA 6 1_555 C DT 25 C N3 DT 8 1_555 hydrog WATSON-CRICK B DA 6 B N6 DA 6 1_555 C DT 25 C O4 DT 8 1_555 hydrog WATSON-CRICK B DC 7 B N3 DC 7 1_555 C DG 24 C N1 DG 7 1_555 hydrog WATSON-CRICK B DC 7 B N4 DC 7 1_555 C DG 24 C O6 DG 7 1_555 hydrog WATSON-CRICK B DC 7 B O2 DC 7 1_555 C DG 24 C N2 DG 7 1_555 hydrog WATSON-CRICK B DT 9 B N3 DT 9 1_555 C DA 22 C N1 DA 5 1_555 hydrog WATSON-CRICK B DT 9 B O4 DT 9 1_555 C DA 22 C N6 DA 5 1_555 hydrog DG-DC PAIR B DG 10 B N1 DG 10 1_555 C DC 21 C N3 DC 4 1_555 hydrog WATSON-CRICK B DG 11 B N1 DG 11 1_555 C DC 20 C N3 DC 3 1_555 hydrog WATSON-CRICK B DG 11 B N2 DG 11 1_555 C DC 20 C O2 DC 3 1_555 hydrog WATSON-CRICK B DG 11 B O6 DG 11 1_555 C DC 20 C N4 DC 3 1_555 hydrog WATSON-CRICK B DA 12 B N1 DA 12 1_555 C DT 19 C N3 DT 2 1_555 hydrog WATSON-CRICK B DA 12 B N6 DA 12 1_555 C DT 19 C O4 DT 2 1_555 hydrog DC-DG PAIR B DC 13 B N3 DC 13 1_555 C DG 18 C N2 DG 1 1_555 HYDROLASE,LYASE/DNA 8-oxoGuanine, 2'-fluoro-8-oxoGuanine, protein-DNA complex, DNA glycosylase, Base Excsion Repair, DNA damage, DNA repair, HYDROLASE, LYASE-DNA complex OGG1_HUMAN UNP 1 12 O15527 GHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPD ELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLI QLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVA DCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQ 3KTU PDB 2 1 3KTU GGTAGACCTGGAC 3KTU PDB 3 1 3KTU GTCCA(FDG)GTCTAC 12 325 3KTU 12 325 O15527 A 1 4 317 1 13 3KTU 1 13 3KTU B 2 1 13 18 29 3KTU 18 29 3KTU C 3 1 12 1 expression tag SER 9 3KTU A O15527 UNP 1 1 expression tag GLU 10 3KTU A O15527 UNP 2 1 expression tag PHE 11 3KTU A O15527 UNP 3 1 ASN engineered mutation CYS 149 3KTU A O15527 UNP 149 141 5 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ALA 24 A ALA 16 A PRO 27 A PRO 19 A GLN 72 A GLN 64 A TYR 78 A TYR 70 A GLN 62 A GLN 54 A GLN 68 A GLN 60 A HIS 54 A HIS 46 A LEU 59 A LEU 51 A ARG 48 A ARG 40 A SER 51 A SER 43 A ARG 169 A ARG 161 A LEU 173 A LEU 165 A VAL 176 A VAL 168 A HIS 179 A HIS 171 BINDING SITE FOR RESIDUE FDG C 23 C FDG 23 Software 15 BINDING SITE FOR RESIDUE CA A 2 A CA 2 Software 4 BINDING SITE FOR RESIDUE CA C 1 C CA 1 Software 2 A GLY 42 A GLY 34 15 1_555 A SER 147 A SER 139 15 1_555 A ASN 150 A ASN 142 15 1_555 A ASN 151 A ASN 143 15 1_555 A ILE 152 A ILE 144 15 1_555 A LYS 249 A LYS 241 15 1_555 A MET 257 A MET 249 15 1_555 A PRO 266 A PRO 258 15 1_555 A ASP 268 A ASP 260 15 1_555 A HIS 270 A HIS 262 15 1_555 A GLN 315 A GLN 307 15 1_555 A PHE 319 A PHE 311 15 1_555 C DA 22 C DA 5 15 1_555 C DG 24 C DG 7 15 1_555 C HOH 109 G HOH 15 1_555 A CYS 241 A CYS 233 4 1_555 A LEU 243 A LEU 235 4 1_555 A VAL 246 A VAL 238 4 1_555 C DC 26 C DC 9 4 1_555 A VAL 269 A VAL 261 2 1_555 C DG 24 C DG 7 2 1_555 179 P 65 2 2