0.010973 0.006335 0.000000 0.000000 0.012671 0.000000 0.000000 0.000000 0.003597 0.00000 0.00000 0.00000 Filchtinski, D. Sharabi, O. Rueppel, A. Vetter, I.R. Herrmann, C. Shifman, J.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 91.130 91.130 277.980 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H15 N5 O11 P2 443.201 n GUANOSINE-5'-DIPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N P N 89 N O N 90 N O N 91 N O N 92 N O N 93 N P N 94 N O N 95 N O N 96 N O N 97 N C N 98 R C N 99 N O N 100 S C N 101 N O N 102 R C N 103 N O N 104 R C Y 105 N N Y 106 N C Y 107 N N Y 108 N C N 109 N C N 110 N O N 111 N N N 112 N C N 113 N N N 114 N N Y 115 N C N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N N N 132 S C N 133 N C N 134 N O N 135 N C N 136 N C N 137 N C N 138 N O N 139 N N N 140 N O N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 S C N 153 N C N 154 N O N 155 N C N 156 N C N 157 N C N 158 N O N 159 N O N 160 N O N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 N C N 172 N C N 173 N O N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C Y 185 N C Y 186 N N Y 187 N C Y 188 N C Y 189 N N N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N O N 202 N H N 203 N H N 204 N N N 205 S C N 206 N C N 207 N O N 208 S C N 209 N C N 210 N C N 211 N C N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C N 231 N C N 232 N C N 233 N C N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C N 253 N C N 254 N C N 255 N C N 256 N N N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N S N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N MG N 294 N N N 295 S C N 296 N C N 297 N O N 298 N C Y 299 N C Y 300 N C Y 301 N C Y 302 N C Y 303 N C Y 304 N C N 305 N O N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N N N 318 S C N 319 N C N 320 N O N 321 N C N 322 N C N 323 N C N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C N 339 N O N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 R C N 353 N O N 354 N C N 355 N O N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N N N 366 S C N 367 N C N 368 N O N 369 N C Y 370 N C Y 371 N C Y 372 N C Y 373 N N Y 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N N N 393 S C N 394 N C N 395 N O N 396 N C Y 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C N 403 N O N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C N 421 N C N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing Y 112 N sing Y 113 N sing Y 114 N doub N 115 N sing Y 116 N sing N 117 N sing Y 118 N doub N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N doub N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing Y 185 N sing Y 186 N doub Y 187 N doub N 188 N sing Y 189 N sing N 190 N sing Y 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing Y 293 N doub Y 294 N sing Y 295 N sing N 296 N sing Y 297 N doub N 298 N sing Y 299 N doub N 300 N sing Y 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing Y 362 N doub Y 363 N sing Y 364 N sing N 365 N sing Y 366 N doub Y 367 N sing Y 368 N sing N 369 N sing Y 370 N sing Y 371 N doub N 372 N sing Y 373 N doub N 374 N sing Y 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing Y 390 N doub Y 391 N sing Y 392 N sing N 393 N sing Y 394 N doub N 395 N sing Y 396 N doub N 397 N sing Y 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 399 422 435 10.1016/j.jmb.2010.03.046 20361980 What makes Ras an efficient molecular switch: a computational, biophysical, and structural study of Ras-GDP interactions with mutants of Raf. 2010 10.2210/pdb3kud/pdb pdb_00003kud 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2004-09-29 MARMOSAIC 225 mm CCD FOCUSED SI(111) MONOCHROMATOR SINGLE WAVELENGTH M x-ray 1 0.97935 1.0 X10SA SLS 0.97935 SYNCHROTRON SLS BEAMLINE X10SA 18875.191 GTPase HRas UNP residues 1-166 1 man polymer 9261.867 RAF proto-oncogene serine/threonine-protein kinase 2.7.11.1 UNP residues 51-131 A85K 1 man polymer 443.201 GUANOSINE-5'-DIPHOSPHATE 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 39 nat water Transforming protein p21, p21ras, H-Ras-1, c-H-ras, Ha-Ras, GTPase HRas, N-terminally processed C-RAF, cRaf, Raf-1 no no MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV REIRQH MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV REIRQH A polypeptide(L) no no PSKTSNTIRVFLPNKQRTVVNVRNGMSLHDCLMKKLKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASLIGEELQVDF L PSKTSNTIRVFLPNKQRTVVNVRNGMSLHDCLMKKLKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASLIGEELQVDF L B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample HRAS, HRAS1 9606 Homo sapiens 562 Escherichia coli human sample RAF1, RAF 9606 Homo sapiens 562 Escherichia coli 3.95 68.84 VAPOR DIFFUSION, HANGING DROP 6.0 1.3M Na-Malonat pH 6.0, 100 mM MES pH 6.1, 4% Betaine, 2% Sarcosine, 2% N,N-dimethylglycine, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 software database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Advisory Version format compliance Refinement description Database references Derived calculations Data collection Refinement description 1 0 2010-03-23 1 1 2011-07-13 1 2 2017-11-01 1 3 2021-10-13 1 4 2023-09-06 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2009-11-27 REL REL GDP GUANOSINE-5'-DIPHOSPHATE MG MAGNESIUM ION HOH water 1GUA PDB ENTRY 1gua PDB experimental model GDP 170 3 GDP GDP 170 A MG 171 4 MG MG 171 A HOH 500 5 HOH HOH 500 A HOH 501 5 HOH HOH 501 A HOH 503 5 HOH HOH 503 A HOH 506 5 HOH HOH 506 A HOH 507 5 HOH HOH 507 A HOH 509 5 HOH HOH 509 A HOH 510 5 HOH HOH 510 A HOH 511 5 HOH HOH 511 A HOH 512 5 HOH HOH 512 A HOH 515 5 HOH HOH 515 A HOH 516 5 HOH HOH 516 A HOH 517 5 HOH HOH 517 A HOH 518 5 HOH HOH 518 A HOH 519 5 HOH HOH 519 A HOH 522 5 HOH HOH 522 A HOH 525 5 HOH HOH 525 A HOH 533 5 HOH HOH 533 A HOH 537 5 HOH HOH 537 A HOH 539 5 HOH HOH 539 A HOH 541 5 HOH HOH 541 A HOH 542 5 HOH HOH 542 A HOH 544 5 HOH HOH 544 A HOH 545 5 HOH HOH 545 A HOH 546 5 HOH HOH 546 A HOH 547 5 HOH HOH 547 A HOH 548 5 HOH HOH 548 A HOH 502 5 HOH HOH 502 B HOH 504 5 HOH HOH 504 B HOH 505 5 HOH HOH 505 B HOH 513 5 HOH HOH 513 B HOH 514 5 HOH HOH 514 B HOH 521 5 HOH HOH 521 B HOH 524 5 HOH HOH 524 B HOH 526 5 HOH HOH 526 B HOH 528 5 HOH HOH 528 B HOH 529 5 HOH HOH 529 B HOH 531 5 HOH HOH 531 B HOH 534 5 HOH HOH 534 B HOH 535 5 HOH HOH 535 B MET 1 n 1 MET 1 A THR 2 n 2 THR 2 A GLU 3 n 3 GLU 3 A TYR 4 n 4 TYR 4 A LYS 5 n 5 LYS 5 A LEU 6 n 6 LEU 6 A VAL 7 n 7 VAL 7 A VAL 8 n 8 VAL 8 A VAL 9 n 9 VAL 9 A GLY 10 n 10 GLY 10 A ALA 11 n 11 ALA 11 A GLY 12 n 12 GLY 12 A GLY 13 n 13 GLY 13 A VAL 14 n 14 VAL 14 A GLY 15 n 15 GLY 15 A LYS 16 n 16 LYS 16 A SER 17 n 17 SER 17 A ALA 18 n 18 ALA 18 A LEU 19 n 19 LEU 19 A THR 20 n 20 THR 20 A ILE 21 n 21 ILE 21 A GLN 22 n 22 GLN 22 A LEU 23 n 23 LEU 23 A ILE 24 n 24 ILE 24 A GLN 25 n 25 GLN 25 A ASN 26 n 26 ASN 26 A HIS 27 n 27 HIS 27 A PHE 28 n 28 PHE 28 A VAL 29 n 29 VAL 29 A ASP 30 n 30 ASP 30 A GLU 31 n 31 GLU 31 A TYR 32 n 32 TYR 32 A ASP 33 n 33 ASP 33 A PRO 34 n 34 PRO 34 A THR 35 n 35 THR 35 A ILE 36 n 36 ILE 36 A GLU 37 n 37 GLU 37 A ASP 38 n 38 ASP 38 A SER 39 n 39 SER 39 A TYR 40 n 40 TYR 40 A ARG 41 n 41 ARG 41 A LYS 42 n 42 LYS 42 A GLN 43 n 43 GLN 43 A VAL 44 n 44 VAL 44 A VAL 45 n 45 VAL 45 A ILE 46 n 46 ILE 46 A ASP 47 n 47 ASP 47 A GLY 48 n 48 GLY 48 A GLU 49 n 49 GLU 49 A THR 50 n 50 THR 50 A CYS 51 n 51 CYS 51 A LEU 52 n 52 LEU 52 A LEU 53 n 53 LEU 53 A ASP 54 n 54 ASP 54 A ILE 55 n 55 ILE 55 A LEU 56 n 56 LEU 56 A ASP 57 n 57 ASP 57 A THR 58 n 58 THR 58 A ALA 59 n 59 ALA 59 A GLY 60 n 60 GLY 60 A GLN 61 n 61 GLN 61 A GLU 62 n 62 GLU 62 A GLU 63 n 63 GLU 63 A TYR 64 n 64 TYR 64 A SER 65 n 65 SER 65 A ALA 66 n 66 ALA 66 A MET 67 n 67 MET 67 A ARG 68 n 68 ARG 68 A ASP 69 n 69 ASP 69 A GLN 70 n 70 GLN 70 A TYR 71 n 71 TYR 71 A MET 72 n 72 MET 72 A ARG 73 n 73 ARG 73 A THR 74 n 74 THR 74 A GLY 75 n 75 GLY 75 A GLU 76 n 76 GLU 76 A GLY 77 n 77 GLY 77 A PHE 78 n 78 PHE 78 A LEU 79 n 79 LEU 79 A CYS 80 n 80 CYS 80 A VAL 81 n 81 VAL 81 A PHE 82 n 82 PHE 82 A ALA 83 n 83 ALA 83 A ILE 84 n 84 ILE 84 A ASN 85 n 85 ASN 85 A ASN 86 n 86 ASN 86 A THR 87 n 87 THR 87 A LYS 88 n 88 LYS 88 A SER 89 n 89 SER 89 A PHE 90 n 90 PHE 90 A GLU 91 n 91 GLU 91 A ASP 92 n 92 ASP 92 A ILE 93 n 93 ILE 93 A HIS 94 n 94 HIS 94 A GLN 95 n 95 GLN 95 A TYR 96 n 96 TYR 96 A ARG 97 n 97 ARG 97 A GLU 98 n 98 GLU 98 A GLN 99 n 99 GLN 99 A ILE 100 n 100 ILE 100 A LYS 101 n 101 LYS 101 A ARG 102 n 102 ARG 102 A VAL 103 n 103 VAL 103 A LYS 104 n 104 LYS 104 A ASP 105 n 105 ASP 105 A SER 106 n 106 SER 106 A ASP 107 n 107 ASP 107 A ASP 108 n 108 ASP 108 A VAL 109 n 109 VAL 109 A PRO 110 n 110 PRO 110 A MET 111 n 111 MET 111 A VAL 112 n 112 VAL 112 A LEU 113 n 113 LEU 113 A VAL 114 n 114 VAL 114 A GLY 115 n 115 GLY 115 A ASN 116 n 116 ASN 116 A LYS 117 n 117 LYS 117 A CYS 118 n 118 CYS 118 A ASP 119 n 119 ASP 119 A LEU 120 n 120 LEU 120 A ALA 121 n 121 ALA 121 A ALA 122 n 122 ALA 122 A ARG 123 n 123 ARG 123 A THR 124 n 124 THR 124 A VAL 125 n 125 VAL 125 A GLU 126 n 126 GLU 126 A SER 127 n 127 SER 127 A ARG 128 n 128 ARG 128 A GLN 129 n 129 GLN 129 A ALA 130 n 130 ALA 130 A GLN 131 n 131 GLN 131 A ASP 132 n 132 ASP 132 A LEU 133 n 133 LEU 133 A ALA 134 n 134 ALA 134 A ARG 135 n 135 ARG 135 A SER 136 n 136 SER 136 A TYR 137 n 137 TYR 137 A GLY 138 n 138 GLY 138 A ILE 139 n 139 ILE 139 A PRO 140 n 140 PRO 140 A TYR 141 n 141 TYR 141 A ILE 142 n 142 ILE 142 A GLU 143 n 143 GLU 143 A THR 144 n 144 THR 144 A SER 145 n 145 SER 145 A ALA 146 n 146 ALA 146 A LYS 147 n 147 LYS 147 A THR 148 n 148 THR 148 A ARG 149 n 149 ARG 149 A GLN 150 n 150 GLN 150 A GLY 151 n 151 GLY 151 A VAL 152 n 152 VAL 152 A GLU 153 n 153 GLU 153 A ASP 154 n 154 ASP 154 A ALA 155 n 155 ALA 155 A PHE 156 n 156 PHE 156 A TYR 157 n 157 TYR 157 A THR 158 n 158 THR 158 A LEU 159 n 159 LEU 159 A VAL 160 n 160 VAL 160 A ARG 161 n 161 ARG 161 A GLU 162 n 162 GLU 162 A ILE 163 n 163 ILE 163 A ARG 164 n 164 ARG 164 A GLN 165 n 165 GLN 165 A n 166 166 A n 1 51 B n 2 52 B n 3 53 B n 4 54 B n 5 55 B ASN 56 n 6 ASN 56 B THR 57 n 7 THR 57 B ILE 58 n 8 ILE 58 B ARG 59 n 9 ARG 59 B VAL 60 n 10 VAL 60 B PHE 61 n 11 PHE 61 B LEU 62 n 12 LEU 62 B PRO 63 n 13 PRO 63 B ASN 64 n 14 ASN 64 B LYS 65 n 15 LYS 65 B GLN 66 n 16 GLN 66 B ARG 67 n 17 ARG 67 B THR 68 n 18 THR 68 B VAL 69 n 19 VAL 69 B VAL 70 n 20 VAL 70 B ASN 71 n 21 ASN 71 B VAL 72 n 22 VAL 72 B ARG 73 n 23 ARG 73 B ASN 74 n 24 ASN 74 B GLY 75 n 25 GLY 75 B MET 76 n 26 MET 76 B SER 77 n 27 SER 77 B LEU 78 n 28 LEU 78 B HIS 79 n 29 HIS 79 B ASP 80 n 30 ASP 80 B CYS 81 n 31 CYS 81 B LEU 82 n 32 LEU 82 B MET 83 n 33 MET 83 B LYS 84 n 34 LYS 84 B LYS 85 n 35 LYS 85 B LEU 86 n 36 LEU 86 B LYS 87 n 37 LYS 87 B VAL 88 n 38 VAL 88 B ARG 89 n 39 ARG 89 B GLY 90 n 40 GLY 90 B LEU 91 n 41 LEU 91 B GLN 92 n 42 GLN 92 B PRO 93 n 43 PRO 93 B GLU 94 n 44 GLU 94 B CYS 95 n 45 CYS 95 B CYS 96 n 46 CYS 96 B ALA 97 n 47 ALA 97 B VAL 98 n 48 VAL 98 B PHE 99 n 49 PHE 99 B ARG 100 n 50 ARG 100 B LEU 101 n 51 LEU 101 B LEU 102 n 52 LEU 102 B HIS 103 n 53 HIS 103 B GLU 104 n 54 GLU 104 B HIS 105 n 55 HIS 105 B LYS 106 n 56 LYS 106 B GLY 107 n 57 GLY 107 B LYS 108 n 58 LYS 108 B LYS 109 n 59 LYS 109 B ALA 110 n 60 ALA 110 B ARG 111 n 61 ARG 111 B LEU 112 n 62 LEU 112 B ASP 113 n 63 ASP 113 B TRP 114 n 64 TRP 114 B ASN 115 n 65 ASN 115 B THR 116 n 66 THR 116 B ASP 117 n 67 ASP 117 B ALA 118 n 68 ALA 118 B ALA 119 n 69 ALA 119 B SER 120 n 70 SER 120 B LEU 121 n 71 LEU 121 B ILE 122 n 72 ILE 122 B GLY 123 n 73 GLY 123 B GLU 124 n 74 GLU 124 B GLU 125 n 75 GLU 125 B LEU 126 n 76 LEU 126 B GLN 127 n 77 GLN 127 B VAL 128 n 78 VAL 128 B ASP 129 n 79 ASP 129 B PHE 130 n 80 PHE 130 B LEU 131 n 81 LEU 131 B 8.5210 3.6079 -2.1541 3.2543 -1.2339 2.7257 0.5110 -1.3656 -0.0042 0.4972 -0.5339 0.0281 -0.3906 0.5373 0.0229 0.1562 -0.0950 -0.0522 0.3187 -0.0105 0.0989 refined -26.9119 -17.1967 -33.7723 X-RAY DIFFRACTION 10.9261 0.2572 4.9273 4.4922 1.9644 13.3426 0.4179 0.3755 -0.2566 0.5229 -0.4745 -0.0628 0.8494 -0.1352 0.0565 0.6926 -0.2755 -0.2147 0.4169 0.1819 0.1256 refined -14.8348 -21.7460 -10.5786 X-RAY DIFFRACTION A 1 A 165 X-RAY DIFFRACTION 1 A 170 A 171 X-RAY DIFFRACTION 1 B 56 B 131 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LYS 42 A N LYS 42 A O LEU 53 A O LEU 53 A O LEU 52 A O LEU 52 A N TYR 4 A N TYR 4 A N VAL 7 A N VAL 7 A O LEU 79 A O LEU 79 A N PHE 82 A N PHE 82 A O ASN 116 A O ASN 116 A N LEU 113 A N LEU 113 A O ILE 142 A O ILE 142 B O THR 68 B O THR 18 B N VAL 60 B N VAL 10 B N PHE 61 B N PHE 11 B O LEU 126 B O LEU 76 B O ASP 129 B O ASP 79 B N ALA 97 B N ALA 47 B N ARG 100 B N ARG 50 B O ALA 110 B O ALA 60 1 A HIS 166 A HIS 166 1 Y 1 B PRO 51 B PRO 1 1 Y 1 B SER 52 B SER 2 1 Y 1 B LYS 53 B LYS 3 1 Y 1 B THR 54 B THR 4 1 Y 1 B SER 55 B SER 5 1 Y 1 A A O O HOH HOH 500 501 1.48 1 A A O3B O GDP HOH 170 501 1.86 1 B B O O LEU HOH 62 505 2.06 1 A A O CA GLN GLU 61 63 2.18 1 A A GLN GLU 61 62 141.86 1 A A GLU GLU 62 63 -38.75 1 A A GLU TYR 63 64 -44.85 1 -18.44 2.70 111.00 92.56 A A A N CA C TYR TYR TYR 64 64 64 N 1 3.79 0.50 120.30 124.09 A A A NE CZ NH1 ARG ARG ARG 97 97 97 N 1 -3.51 0.50 120.30 116.79 A A A NE CZ NH2 ARG ARG ARG 97 97 97 N 1 3.25 0.50 120.30 123.55 A A A NE CZ NH1 ARG ARG ARG 123 123 123 N 1 -7.82 0.90 118.30 110.48 A A A CB CG OD1 ASP ASP ASP 154 154 154 N 1 5.74 0.90 118.30 124.04 A A A CB CG OD2 ASP ASP ASP 154 154 154 N 1 -14.26 2.30 115.30 101.04 B B B CA CB CG LEU LEU LEU 82 82 82 N 1 14.63 2.30 115.30 129.93 B B B CA CB CG LEU LEU LEU 131 131 131 N 1 A A CG CD GLN GLN 25 25 0.236 0.023 1.506 1.742 N 1 A A CE1 NE2 HIS HIS 27 27 -0.070 0.011 1.317 1.247 N 1 A A CB CG GLU GLU 126 126 0.119 0.019 1.517 1.636 N 1 A A CB CG GLU GLU 143 143 0.116 0.019 1.517 1.633 N 1 A A O O HOH HOH 539 541 1.16 1_555 18_444 1 A ALA 11 -44.14 160.20 1 A ILE 36 -98.78 -65.14 1 A GLU 62 -67.05 91.08 1 A ALA 66 -52.42 41.14 1 A MET 67 -137.09 -58.11 1 A ASP 69 -141.46 12.68 1 A GLN 70 -163.28 -20.72 1 A MET 72 168.74 -44.13 1 A LYS 104 -105.06 -148.50 1 A ASP 105 -142.83 13.49 1 A LYS 117 73.05 31.64 1 A ARG 149 75.74 -0.08 1 B THR 57 -123.63 -169.23 1 B ASN 64 92.76 -5.78 1 B LYS 65 107.28 41.22 1 B ARG 73 -92.88 -146.02 1 B SER 77 -75.12 -163.52 1 B ARG 89 -74.04 29.72 1 B HIS 103 -95.66 44.07 1 B GLU 104 -110.64 64.48 1 B HIS 105 145.11 -6.70 1 B LYS 106 71.41 75.86 1 B ASP 117 -41.82 154.91 1 B SER 120 -56.77 18.87 1 B ILE 122 -39.29 29.35 1 B GLU 124 -120.72 -156.40 1 B PHE 130 -31.49 125.45 39.254 2.06 1.03 0.00 2.06 0.00 -3.10 0.941 0.931 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.26381 0.23673 0.23809 2.15 19.68 1230 23353 5.0 100.00 12.576 0.141 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0 MOLECULAR REPLACEMENT 0.187 0.169 0.80 0.80 1.20 PDB ENTRY 1gua MAXIMUM LIKELIHOOD MASK 2.15 19.68 39 1992 29 0 1924 0.028 0.022 1996 2.571 1.981 2699 9.471 5.000 243 39.365 24.040 99 23.407 15.000 368 17.343 15.000 18 0.218 0.200 304 0.012 0.020 1490 1.302 1.500 1200 2.207 2.000 1940 3.302 3.000 796 4.941 4.500 757 0.398 0.378 2.205 89 1687 20 100.00 54.0 2.15 20.0 3KUD 24673 24583 0 0 0.089 0.052 1 14.76 3.83 92.8 0.669 2.15 2.21 1.83 1473 0.379 1 1.83 82.2 data collection MAR345 phasing MOLREP refinement REFMAC 5.5.0102 data reduction XDS data scaling XSCALE Complex of Ras-GDP with RafRBD(A85K) 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N A GLY 15 A GLY 15 HELX_P A ASN 26 A ASN 26 1 1 12 A ASN 86 A ASN 86 HELX_P A LYS 104 A LYS 104 1 2 19 A GLU 126 A GLU 126 HELX_P A GLY 138 A GLY 138 1 3 13 A GLY 151 A GLY 151 HELX_P A GLN 165 A GLN 165 1 4 15 B SER 77 B SER 27 HELX_P B ARG 89 B ARG 39 1 5 13 B GLN 92 B GLN 42 HELX_P B GLU 94 B GLU 44 5 6 3 B ALA 118 B ALA 68 HELX_P B ILE 122 B ILE 72 5 7 5 GTP BINDING PROTEIN/TRANSFERASE Ras-effector complex, GTP-binding, Nucleotide-binding, Proto-oncogene, Transferase, GTP BINDING PROTEIN-TRANSFERASE complex RASH_HUMAN UNP 1 1 P01112 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV REIRQH RAF1_HUMAN UNP 2 51 P04049 PSKTSNTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASLIGEELQVDF L 1 166 3KUD 1 166 P01112 A 1 1 166 51 131 3KUD 51 131 P04049 B 2 1 81 2 ALA engineered mutation LYS 85 3KUD B P04049 UNP 85 35 6 5 anti-parallel parallel parallel parallel parallel anti-parallel parallel anti-parallel anti-parallel A GLU 37 A GLU 37 A ILE 46 A ILE 46 A GLU 49 A GLU 49 A THR 58 A THR 58 A GLU 3 A GLU 3 A VAL 9 A VAL 9 A GLY 77 A GLY 77 A ALA 83 A ALA 83 A MET 111 A MET 111 A ASN 116 A ASN 116 A TYR 141 A TYR 141 A GLU 143 A GLU 143 B ARG 67 B ARG 17 B VAL 69 B VAL 19 B ARG 59 B ARG 9 B PHE 61 B PHE 11 B GLU 125 B GLU 75 B PHE 130 B PHE 80 B CYS 96 B CYS 46 B LEU 102 B LEU 52 B LYS 108 B LYS 58 B ARG 111 B ARG 61 BINDING SITE FOR RESIDUE GDP A 170 A GDP 170 Software 23 BINDING SITE FOR RESIDUE MG A 171 A MG 171 Software 6 A GLY 13 A GLY 13 23 1_555 A VAL 14 A VAL 14 23 1_555 A GLY 15 A GLY 15 23 1_555 A LYS 16 A LYS 16 23 1_555 A SER 17 A SER 17 23 1_555 A ALA 18 A ALA 18 23 1_555 A PHE 28 A PHE 28 23 1_555 A VAL 29 A VAL 29 23 1_555 A ASP 30 A ASP 30 23 1_555 A GLU 31 A GLU 31 23 1_555 A TYR 32 A TYR 32 23 1_555 A ASN 116 A ASN 116 23 1_555 A LYS 117 A LYS 117 23 1_555 A ASP 119 A ASP 119 23 1_555 A LEU 120 A LEU 120 23 1_555 A SER 145 A SER 145 23 1_555 A ALA 146 A ALA 146 23 1_555 A LYS 147 A LYS 147 23 1_555 A MG 171 D MG 23 1_555 A HOH 500 E HOH 23 1_555 A HOH 501 E HOH 23 1_555 A HOH 503 E HOH 23 1_555 A HOH 548 E HOH 23 1_555 A SER 17 A SER 17 6 1_555 A THR 35 A THR 35 6 1_555 A GDP 170 C GDP 6 1_555 A HOH 501 E HOH 6 1_555 A HOH 503 E HOH 6 1_555 A HOH 548 E HOH 6 1_555 155 H 3 2