0.024652
0.000000
0.000000
0.000000
0.009915
0.000000
0.000000
0.000000
0.008359
0.000000
0.000000
0.000000
Ramagopal, U.A.
Toro, R.
0000-0002-2487-9713
Burley, S.K.
Almo, S.C.
New York SGX Research Center for Structural Genomics (NYSGXRC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
40.565
100.860
119.634
C10 H13 N5 O4
267.241
ADENOSINE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Crystal structure of probable rRNA-methyltransferase from Porphyromonas gingivalis
0000-0002-2487-9713
100
1
CCD
2009-08-14
ADSC QUANTUM 315
SINGLE WAVELENGTH
x-ray
1
0.9793
1.0
X29A
NSLS
0.9793
SYNCHROTRON
NSLS BEAMLINE X29A
29200.488
Probable r-RNA methyltransferase
2
man
polymer
267.241
ADENOSINE
2
syn
non-polymer
18.015
water
136
nat
water
no
yes
(MSE)SLSLPLFYAPDIEQSDRLPDDEAGHILRVLR(MSE)QAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQ
KPWRDRITIAIAPTKQSER(MSE)EW(MSE)LEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISA(MSE)KQSLKAS
FPVIRVNIPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEGDFSPSEVESALLAGFAPVS
LGESRLRTETAGLVACQWIHTLQACYRIGEGHHHHHH
MSLSLPLFYAPDIEQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQKPWRDRIT
IAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIADTPKA
AVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEGDFSPSEVESALLAGFAPVSLGESRLRTETAGLVACQWIH
TLQACYRIGEGHHHHHH
A,B
NYSGXRC-11285c
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 33277 /DSM 20709 /JCM 12257
sample
PGN_0201
431947
Porphyromonas gingivalis ATCC 33277
469008
Escherichia coli
BL21(DE3)
BC-pSGX4(BC)
1
2.10
41.30
VAPOR DIFFUSION, SITTING DROP
6.5
0.1 M Bis-Tris pH 6.5, 25% PEG 3350, 0.2M Ammonium Acetate, Vapor diffusion, Sitting drop, temperature 298K
298
New York SGX Research Center for Structural Genomics
NYSGXRC
PSI, Protein Structure Initiative
audit_author
citation_author
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Database references
Derived calculations
Structure summary
1
0
2010-01-19
1
1
2011-07-13
1
2
2021-02-10
_audit_author.identifier_ORCID
_citation_author.identifier_ORCID
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2009-11-30
REL
REL
ADN
ADENOSINE
HOH
water
ASSIGNMENT OF BOUND LIGAND "ADN" IS PURELY BASED ON DENSITY
ADN
300
2
ADN
ADN
300
A
ADN
300
2
ADN
ADN
300
B
HOH
1
3
HOH
HOH
256
A
HOH
2
3
HOH
HOH
257
A
HOH
5
3
HOH
HOH
258
A
HOH
6
3
HOH
HOH
259
A
HOH
7
3
HOH
HOH
260
A
HOH
8
3
HOH
HOH
261
A
HOH
9
3
HOH
HOH
262
A
HOH
10
3
HOH
HOH
263
A
HOH
11
3
HOH
HOH
264
A
HOH
12
3
HOH
HOH
265
A
HOH
13
3
HOH
HOH
266
A
HOH
14
3
HOH
HOH
267
A
HOH
15
3
HOH
HOH
268
A
HOH
16
3
HOH
HOH
269
A
HOH
17
3
HOH
HOH
270
A
HOH
18
3
HOH
HOH
271
A
HOH
20
3
HOH
HOH
272
A
HOH
21
3
HOH
HOH
273
A
HOH
23
3
HOH
HOH
274
A
HOH
24
3
HOH
HOH
275
A
HOH
26
3
HOH
HOH
276
A
HOH
29
3
HOH
HOH
277
A
HOH
32
3
HOH
HOH
278
A
HOH
33
3
HOH
HOH
279
A
HOH
35
3
HOH
HOH
280
A
HOH
37
3
HOH
HOH
281
A
HOH
38
3
HOH
HOH
282
A
HOH
39
3
HOH
HOH
283
A
HOH
40
3
HOH
HOH
284
A
HOH
41
3
HOH
HOH
285
A
HOH
42
3
HOH
HOH
286
A
HOH
44
3
HOH
HOH
287
A
HOH
45
3
HOH
HOH
288
A
HOH
48
3
HOH
HOH
289
A
HOH
49
3
HOH
HOH
290
A
HOH
50
3
HOH
HOH
291
A
HOH
55
3
HOH
HOH
292
A
HOH
56
3
HOH
HOH
293
A
HOH
58
3
HOH
HOH
294
A
HOH
60
3
HOH
HOH
295
A
HOH
62
3
HOH
HOH
296
A
HOH
66
3
HOH
HOH
297
A
HOH
69
3
HOH
HOH
298
A
HOH
70
3
HOH
HOH
299
A
HOH
71
3
HOH
HOH
301
A
HOH
76
3
HOH
HOH
302
A
HOH
78
3
HOH
HOH
303
A
HOH
81
3
HOH
HOH
304
A
HOH
84
3
HOH
HOH
305
A
HOH
86
3
HOH
HOH
306
A
HOH
87
3
HOH
HOH
307
A
HOH
89
3
HOH
HOH
308
A
HOH
90
3
HOH
HOH
309
A
HOH
92
3
HOH
HOH
310
A
HOH
93
3
HOH
HOH
311
A
HOH
94
3
HOH
HOH
312
A
HOH
95
3
HOH
HOH
313
A
HOH
96
3
HOH
HOH
314
A
HOH
97
3
HOH
HOH
315
A
HOH
100
3
HOH
HOH
316
A
HOH
101
3
HOH
HOH
317
A
HOH
104
3
HOH
HOH
318
A
HOH
105
3
HOH
HOH
319
A
HOH
106
3
HOH
HOH
320
A
HOH
108
3
HOH
HOH
321
A
HOH
110
3
HOH
HOH
322
A
HOH
113
3
HOH
HOH
323
A
HOH
114
3
HOH
HOH
324
A
HOH
119
3
HOH
HOH
325
A
HOH
120
3
HOH
HOH
326
A
HOH
123
3
HOH
HOH
327
A
HOH
124
3
HOH
HOH
328
A
HOH
126
3
HOH
HOH
329
A
HOH
127
3
HOH
HOH
330
A
HOH
128
3
HOH
HOH
331
A
HOH
129
3
HOH
HOH
332
A
HOH
131
3
HOH
HOH
333
A
HOH
133
3
HOH
HOH
334
A
HOH
134
3
HOH
HOH
335
A
HOH
135
3
HOH
HOH
336
A
HOH
136
3
HOH
HOH
337
A
HOH
137
3
HOH
HOH
338
A
HOH
3
3
HOH
HOH
256
B
HOH
4
3
HOH
HOH
257
B
HOH
19
3
HOH
HOH
258
B
HOH
22
3
HOH
HOH
259
B
HOH
25
3
HOH
HOH
260
B
HOH
27
3
HOH
HOH
261
B
HOH
28
3
HOH
HOH
262
B
HOH
30
3
HOH
HOH
263
B
HOH
31
3
HOH
HOH
264
B
HOH
34
3
HOH
HOH
265
B
HOH
36
3
HOH
HOH
266
B
HOH
43
3
HOH
HOH
267
B
HOH
46
3
HOH
HOH
268
B
HOH
51
3
HOH
HOH
269
B
HOH
52
3
HOH
HOH
270
B
HOH
53
3
HOH
HOH
271
B
HOH
54
3
HOH
HOH
272
B
HOH
57
3
HOH
HOH
273
B
HOH
59
3
HOH
HOH
274
B
HOH
61
3
HOH
HOH
275
B
HOH
63
3
HOH
HOH
276
B
HOH
64
3
HOH
HOH
277
B
HOH
65
3
HOH
HOH
278
B
HOH
67
3
HOH
HOH
279
B
HOH
68
3
HOH
HOH
280
B
HOH
72
3
HOH
HOH
281
B
HOH
73
3
HOH
HOH
282
B
HOH
74
3
HOH
HOH
283
B
HOH
75
3
HOH
HOH
284
B
HOH
77
3
HOH
HOH
285
B
HOH
79
3
HOH
HOH
286
B
HOH
80
3
HOH
HOH
287
B
HOH
82
3
HOH
HOH
288
B
HOH
83
3
HOH
HOH
289
B
HOH
85
3
HOH
HOH
290
B
HOH
88
3
HOH
HOH
291
B
HOH
91
3
HOH
HOH
292
B
HOH
98
3
HOH
HOH
293
B
HOH
99
3
HOH
HOH
294
B
HOH
102
3
HOH
HOH
295
B
HOH
103
3
HOH
HOH
296
B
HOH
107
3
HOH
HOH
297
B
HOH
109
3
HOH
HOH
298
B
HOH
111
3
HOH
HOH
299
B
HOH
112
3
HOH
HOH
301
B
HOH
115
3
HOH
HOH
302
B
HOH
116
3
HOH
HOH
303
B
HOH
117
3
HOH
HOH
304
B
HOH
118
3
HOH
HOH
305
B
HOH
121
3
HOH
HOH
306
B
HOH
122
3
HOH
HOH
307
B
HOH
125
3
HOH
HOH
308
B
HOH
130
3
HOH
HOH
309
B
HOH
132
3
HOH
HOH
310
B
n
1
-1
A
n
2
0
A
n
3
1
A
n
4
2
A
LEU
3
n
5
LEU
3
A
PRO
4
n
6
PRO
4
A
LEU
5
n
7
LEU
5
A
PHE
6
n
8
PHE
6
A
TYR
7
n
9
TYR
7
A
ALA
8
n
10
ALA
8
A
PRO
9
n
11
PRO
9
A
ASP
10
n
12
ASP
10
A
ILE
11
n
13
ILE
11
A
GLU
12
n
14
GLU
12
A
GLN
13
n
15
GLN
13
A
SER
14
n
16
SER
14
A
ASP
15
n
17
ASP
15
A
ARG
16
n
18
ARG
16
A
LEU
17
n
19
LEU
17
A
PRO
18
n
20
PRO
18
A
ASP
19
n
21
ASP
19
A
ASP
20
n
22
ASP
20
A
GLU
21
n
23
GLU
21
A
ALA
22
n
24
ALA
22
A
GLY
23
n
25
GLY
23
A
HIS
24
n
26
HIS
24
A
ILE
25
n
27
ILE
25
A
LEU
26
n
28
LEU
26
A
ARG
27
n
29
ARG
27
A
VAL
28
n
30
VAL
28
A
LEU
29
n
31
LEU
29
A
ARG
30
n
32
ARG
30
A
MSE
31
n
33
MSE
31
A
GLN
32
n
34
GLN
32
A
ALA
33
n
35
ALA
33
A
GLY
34
n
36
GLY
34
A
ASP
35
n
37
ASP
35
A
ARG
36
n
38
ARG
36
A
LEU
37
n
39
LEU
37
A
ARG
38
n
40
ARG
38
A
LEU
39
n
41
LEU
39
A
THR
40
n
42
THR
40
A
ASP
41
n
43
ASP
41
A
GLY
42
n
44
GLY
42
A
ARG
43
n
45
ARG
43
A
GLY
44
n
46
GLY
44
A
SER
45
n
47
SER
45
A
PHE
46
n
48
PHE
46
A
PHE
47
n
49
PHE
47
A
ASP
48
n
50
ASP
48
A
ALA
49
n
51
ALA
49
A
VAL
50
n
52
VAL
50
A
ILE
51
n
53
ILE
51
A
GLU
52
n
54
GLU
52
A
THR
53
n
55
THR
53
A
ALA
54
n
56
ALA
54
A
ASP
55
n
57
ASP
55
A
ARG
56
n
58
ARG
56
A
LYS
57
n
59
LYS
57
A
SER
58
n
60
SER
58
A
CYS
59
n
61
CYS
59
A
TYR
60
n
62
TYR
60
A
VAL
61
n
63
VAL
61
A
SER
62
n
64
SER
62
A
VAL
63
n
65
VAL
63
A
CYS
64
n
66
CYS
64
A
GLY
65
n
67
GLY
65
A
GLN
66
n
68
GLN
66
A
GLU
67
n
69
GLU
67
A
SER
68
n
70
SER
68
A
TRP
69
n
71
TRP
69
A
GLN
70
n
72
GLN
70
A
LYS
71
n
73
LYS
71
A
PRO
72
n
74
PRO
72
A
TRP
73
n
75
TRP
73
A
ARG
74
n
76
ARG
74
A
ASP
75
n
77
ASP
75
A
ARG
76
n
78
ARG
76
A
ILE
77
n
79
ILE
77
A
THR
78
n
80
THR
78
A
ILE
79
n
81
ILE
79
A
ALA
80
n
82
ALA
80
A
ILE
81
n
83
ILE
81
A
ALA
82
n
84
ALA
82
A
PRO
83
n
85
PRO
83
A
THR
84
n
86
THR
84
A
LYS
85
n
87
LYS
85
A
GLN
86
n
88
GLN
86
A
SER
87
n
89
SER
87
A
GLU
88
n
90
GLU
88
A
ARG
89
n
91
ARG
89
A
MSE
90
n
92
MSE
90
A
GLU
91
n
93
GLU
91
A
TRP
92
n
94
TRP
92
A
MSE
93
n
95
MSE
93
A
LEU
94
n
96
LEU
94
A
GLU
95
n
97
GLU
95
A
LYS
96
n
98
LYS
96
A
LEU
97
n
99
LEU
97
A
VAL
98
n
100
VAL
98
A
GLU
99
n
101
GLU
99
A
ILE
100
n
102
ILE
100
A
GLY
101
n
103
GLY
101
A
VAL
102
n
104
VAL
102
A
ASP
103
n
105
ASP
103
A
GLU
104
n
106
GLU
104
A
VAL
105
n
107
VAL
105
A
VAL
106
n
108
VAL
106
A
PHE
107
n
109
PHE
107
A
ILE
108
n
110
ILE
108
A
GLU
109
n
111
GLU
109
A
SER
110
n
112
SER
110
A
GLU
111
n
113
GLU
111
A
HIS
112
n
114
HIS
112
A
SER
113
n
115
SER
113
A
GLU
114
n
116
GLU
114
A
ARG
115
n
117
ARG
115
A
ARG
116
n
118
ARG
116
A
ARG
117
n
119
ARG
117
A
ILE
118
n
120
ILE
118
A
LYS
119
n
121
LYS
119
A
ALA
120
n
122
ALA
120
A
GLU
121
n
123
GLU
121
A
ARG
122
n
124
ARG
122
A
LEU
123
n
125
LEU
123
A
GLU
124
n
126
GLU
124
A
ARG
125
n
127
ARG
125
A
ILE
126
n
128
ILE
126
A
ALA
127
n
129
ALA
127
A
ILE
128
n
130
ILE
128
A
SER
129
n
131
SER
129
A
ALA
130
n
132
ALA
130
A
MSE
131
n
133
MSE
131
A
LYS
132
n
134
LYS
132
A
GLN
133
n
135
GLN
133
A
SER
134
n
136
SER
134
A
LEU
135
n
137
LEU
135
A
LYS
136
n
138
LYS
136
A
ALA
137
n
139
ALA
137
A
SER
138
n
140
SER
138
A
PHE
139
n
141
PHE
139
A
PRO
140
n
142
PRO
140
A
VAL
141
n
143
VAL
141
A
ILE
142
n
144
ILE
142
A
ARG
143
n
145
ARG
143
A
VAL
144
n
146
VAL
144
A
ASN
145
n
147
ASN
145
A
ILE
146
n
148
ILE
146
A
PRO
147
n
149
PRO
147
A
ILE
148
n
150
ILE
148
A
GLN
149
n
151
GLN
149
A
THR
150
n
152
THR
150
A
VAL
151
n
153
VAL
151
A
ILE
152
n
154
ILE
152
A
ALA
153
n
155
ALA
153
A
ASP
154
n
156
ASP
154
A
THR
155
n
157
THR
155
A
PRO
156
n
158
PRO
156
A
LYS
157
n
159
LYS
157
A
ALA
158
n
160
ALA
158
A
ALA
159
n
161
ALA
159
A
VAL
160
n
162
VAL
160
A
ARG
161
n
163
ARG
161
A
LEU
162
n
164
LEU
162
A
ILE
163
n
165
ILE
163
A
ALA
164
n
166
ALA
164
A
TYR
165
n
167
TYR
165
A
VAL
166
n
168
VAL
166
A
ASP
167
n
169
ASP
167
A
GLU
168
n
170
GLU
168
A
ALA
169
n
171
ALA
169
A
VAL
170
n
172
VAL
170
A
ARG
171
n
173
ARG
171
A
n
174
172
A
n
175
173
A
n
176
174
A
n
177
175
A
n
178
176
A
GLY
177
n
179
GLY
177
A
ARG
178
n
180
ARG
178
A
GLY
179
n
181
GLY
179
A
TYR
180
n
182
TYR
180
A
PRO
181
n
183
PRO
181
A
SER
182
n
184
SER
182
A
ASP
183
n
185
ASP
183
A
PHE
184
n
186
PHE
184
A
TYR
185
n
187
TYR
185
A
HIS
186
n
188
HIS
186
A
VAL
187
n
189
VAL
187
A
GLY
188
n
190
GLY
188
A
GLN
189
n
191
GLN
189
A
ASP
190
n
192
ASP
190
A
VAL
191
n
193
VAL
191
A
LEU
192
n
194
LEU
192
A
ILE
193
n
195
ILE
193
A
LEU
194
n
196
LEU
194
A
ILE
195
n
197
ILE
195
A
GLY
196
n
198
GLY
196
A
PRO
197
n
199
PRO
197
A
GLU
198
n
200
GLU
198
A
GLY
199
n
201
GLY
199
A
ASP
200
n
202
ASP
200
A
PHE
201
n
203
PHE
201
A
SER
202
n
204
SER
202
A
PRO
203
n
205
PRO
203
A
SER
204
n
206
SER
204
A
GLU
205
n
207
GLU
205
A
VAL
206
n
208
VAL
206
A
GLU
207
n
209
GLU
207
A
SER
208
n
210
SER
208
A
ALA
209
n
211
ALA
209
A
LEU
210
n
212
LEU
210
A
LEU
211
n
213
LEU
211
A
ALA
212
n
214
ALA
212
A
GLY
213
n
215
GLY
213
A
PHE
214
n
216
PHE
214
A
ALA
215
n
217
ALA
215
A
PRO
216
n
218
PRO
216
A
VAL
217
n
219
VAL
217
A
SER
218
n
220
SER
218
A
LEU
219
n
221
LEU
219
A
GLY
220
n
222
GLY
220
A
GLU
221
n
223
GLU
221
A
SER
222
n
224
SER
222
A
ARG
223
n
225
ARG
223
A
LEU
224
n
226
LEU
224
A
ARG
225
n
227
ARG
225
A
THR
226
n
228
THR
226
A
GLU
227
n
229
GLU
227
A
THR
228
n
230
THR
228
A
ALA
229
n
231
ALA
229
A
GLY
230
n
232
GLY
230
A
LEU
231
n
233
LEU
231
A
VAL
232
n
234
VAL
232
A
ALA
233
n
235
ALA
233
A
CYS
234
n
236
CYS
234
A
GLN
235
n
237
GLN
235
A
TRP
236
n
238
TRP
236
A
ILE
237
n
239
ILE
237
A
HIS
238
n
240
HIS
238
A
THR
239
n
241
THR
239
A
LEU
240
n
242
LEU
240
A
GLN
241
n
243
GLN
241
A
ALA
242
n
244
ALA
242
A
CYS
243
n
245
CYS
243
A
TYR
244
n
246
TYR
244
A
ARG
245
n
247
ARG
245
A
ILE
246
n
248
ILE
246
A
GLY
247
n
249
GLY
247
A
n
250
248
A
n
251
249
A
n
252
250
A
n
253
251
A
n
254
252
A
n
255
253
A
n
256
254
A
n
257
255
A
n
1
-1
B
n
2
0
B
n
3
1
B
n
4
2
B
LEU
3
n
5
LEU
3
B
PRO
4
n
6
PRO
4
B
LEU
5
n
7
LEU
5
B
PHE
6
n
8
PHE
6
B
TYR
7
n
9
TYR
7
B
ALA
8
n
10
ALA
8
B
PRO
9
n
11
PRO
9
B
ASP
10
n
12
ASP
10
B
ILE
11
n
13
ILE
11
B
GLU
12
n
14
GLU
12
B
GLN
13
n
15
GLN
13
B
SER
14
n
16
SER
14
B
ASP
15
n
17
ASP
15
B
ARG
16
n
18
ARG
16
B
LEU
17
n
19
LEU
17
B
PRO
18
n
20
PRO
18
B
ASP
19
n
21
ASP
19
B
ASP
20
n
22
ASP
20
B
GLU
21
n
23
GLU
21
B
ALA
22
n
24
ALA
22
B
GLY
23
n
25
GLY
23
B
HIS
24
n
26
HIS
24
B
ILE
25
n
27
ILE
25
B
LEU
26
n
28
LEU
26
B
ARG
27
n
29
ARG
27
B
VAL
28
n
30
VAL
28
B
LEU
29
n
31
LEU
29
B
ARG
30
n
32
ARG
30
B
MSE
31
n
33
MSE
31
B
GLN
32
n
34
GLN
32
B
ALA
33
n
35
ALA
33
B
GLY
34
n
36
GLY
34
B
ASP
35
n
37
ASP
35
B
ARG
36
n
38
ARG
36
B
LEU
37
n
39
LEU
37
B
ARG
38
n
40
ARG
38
B
LEU
39
n
41
LEU
39
B
THR
40
n
42
THR
40
B
ASP
41
n
43
ASP
41
B
GLY
42
n
44
GLY
42
B
ARG
43
n
45
ARG
43
B
GLY
44
n
46
GLY
44
B
SER
45
n
47
SER
45
B
PHE
46
n
48
PHE
46
B
PHE
47
n
49
PHE
47
B
ASP
48
n
50
ASP
48
B
ALA
49
n
51
ALA
49
B
VAL
50
n
52
VAL
50
B
ILE
51
n
53
ILE
51
B
GLU
52
n
54
GLU
52
B
THR
53
n
55
THR
53
B
ALA
54
n
56
ALA
54
B
ASP
55
n
57
ASP
55
B
ARG
56
n
58
ARG
56
B
LYS
57
n
59
LYS
57
B
SER
58
n
60
SER
58
B
CYS
59
n
61
CYS
59
B
TYR
60
n
62
TYR
60
B
VAL
61
n
63
VAL
61
B
SER
62
n
64
SER
62
B
VAL
63
n
65
VAL
63
B
CYS
64
n
66
CYS
64
B
GLY
65
n
67
GLY
65
B
GLN
66
n
68
GLN
66
B
GLU
67
n
69
GLU
67
B
SER
68
n
70
SER
68
B
TRP
69
n
71
TRP
69
B
GLN
70
n
72
GLN
70
B
LYS
71
n
73
LYS
71
B
PRO
72
n
74
PRO
72
B
TRP
73
n
75
TRP
73
B
ARG
74
n
76
ARG
74
B
ASP
75
n
77
ASP
75
B
ARG
76
n
78
ARG
76
B
ILE
77
n
79
ILE
77
B
THR
78
n
80
THR
78
B
ILE
79
n
81
ILE
79
B
ALA
80
n
82
ALA
80
B
ILE
81
n
83
ILE
81
B
ALA
82
n
84
ALA
82
B
PRO
83
n
85
PRO
83
B
THR
84
n
86
THR
84
B
LYS
85
n
87
LYS
85
B
GLN
86
n
88
GLN
86
B
SER
87
n
89
SER
87
B
GLU
88
n
90
GLU
88
B
ARG
89
n
91
ARG
89
B
MSE
90
n
92
MSE
90
B
GLU
91
n
93
GLU
91
B
TRP
92
n
94
TRP
92
B
MSE
93
n
95
MSE
93
B
LEU
94
n
96
LEU
94
B
GLU
95
n
97
GLU
95
B
LYS
96
n
98
LYS
96
B
LEU
97
n
99
LEU
97
B
VAL
98
n
100
VAL
98
B
GLU
99
n
101
GLU
99
B
ILE
100
n
102
ILE
100
B
GLY
101
n
103
GLY
101
B
VAL
102
n
104
VAL
102
B
ASP
103
n
105
ASP
103
B
GLU
104
n
106
GLU
104
B
VAL
105
n
107
VAL
105
B
VAL
106
n
108
VAL
106
B
PHE
107
n
109
PHE
107
B
ILE
108
n
110
ILE
108
B
GLU
109
n
111
GLU
109
B
SER
110
n
112
SER
110
B
GLU
111
n
113
GLU
111
B
HIS
112
n
114
HIS
112
B
SER
113
n
115
SER
113
B
GLU
114
n
116
GLU
114
B
ARG
115
n
117
ARG
115
B
ARG
116
n
118
ARG
116
B
ARG
117
n
119
ARG
117
B
ILE
118
n
120
ILE
118
B
LYS
119
n
121
LYS
119
B
ALA
120
n
122
ALA
120
B
GLU
121
n
123
GLU
121
B
ARG
122
n
124
ARG
122
B
LEU
123
n
125
LEU
123
B
GLU
124
n
126
GLU
124
B
ARG
125
n
127
ARG
125
B
ILE
126
n
128
ILE
126
B
ALA
127
n
129
ALA
127
B
ILE
128
n
130
ILE
128
B
SER
129
n
131
SER
129
B
ALA
130
n
132
ALA
130
B
MSE
131
n
133
MSE
131
B
LYS
132
n
134
LYS
132
B
GLN
133
n
135
GLN
133
B
SER
134
n
136
SER
134
B
LEU
135
n
137
LEU
135
B
LYS
136
n
138
LYS
136
B
ALA
137
n
139
ALA
137
B
SER
138
n
140
SER
138
B
PHE
139
n
141
PHE
139
B
PRO
140
n
142
PRO
140
B
VAL
141
n
143
VAL
141
B
ILE
142
n
144
ILE
142
B
ARG
143
n
145
ARG
143
B
VAL
144
n
146
VAL
144
B
ASN
145
n
147
ASN
145
B
ILE
146
n
148
ILE
146
B
PRO
147
n
149
PRO
147
B
ILE
148
n
150
ILE
148
B
GLN
149
n
151
GLN
149
B
THR
150
n
152
THR
150
B
VAL
151
n
153
VAL
151
B
ILE
152
n
154
ILE
152
B
ALA
153
n
155
ALA
153
B
ASP
154
n
156
ASP
154
B
THR
155
n
157
THR
155
B
PRO
156
n
158
PRO
156
B
LYS
157
n
159
LYS
157
B
ALA
158
n
160
ALA
158
B
ALA
159
n
161
ALA
159
B
VAL
160
n
162
VAL
160
B
ARG
161
n
163
ARG
161
B
LEU
162
n
164
LEU
162
B
ILE
163
n
165
ILE
163
B
ALA
164
n
166
ALA
164
B
TYR
165
n
167
TYR
165
B
VAL
166
n
168
VAL
166
B
ASP
167
n
169
ASP
167
B
GLU
168
n
170
GLU
168
B
ALA
169
n
171
ALA
169
B
VAL
170
n
172
VAL
170
B
ARG
171
n
173
ARG
171
B
n
174
172
B
n
175
173
B
n
176
174
B
n
177
175
B
n
178
176
B
GLY
177
n
179
GLY
177
B
ARG
178
n
180
ARG
178
B
GLY
179
n
181
GLY
179
B
TYR
180
n
182
TYR
180
B
PRO
181
n
183
PRO
181
B
SER
182
n
184
SER
182
B
ASP
183
n
185
ASP
183
B
PHE
184
n
186
PHE
184
B
TYR
185
n
187
TYR
185
B
HIS
186
n
188
HIS
186
B
VAL
187
n
189
VAL
187
B
GLY
188
n
190
GLY
188
B
GLN
189
n
191
GLN
189
B
ASP
190
n
192
ASP
190
B
VAL
191
n
193
VAL
191
B
LEU
192
n
194
LEU
192
B
ILE
193
n
195
ILE
193
B
LEU
194
n
196
LEU
194
B
ILE
195
n
197
ILE
195
B
GLY
196
n
198
GLY
196
B
PRO
197
n
199
PRO
197
B
GLU
198
n
200
GLU
198
B
GLY
199
n
201
GLY
199
B
ASP
200
n
202
ASP
200
B
PHE
201
n
203
PHE
201
B
SER
202
n
204
SER
202
B
PRO
203
n
205
PRO
203
B
SER
204
n
206
SER
204
B
GLU
205
n
207
GLU
205
B
VAL
206
n
208
VAL
206
B
GLU
207
n
209
GLU
207
B
SER
208
n
210
SER
208
B
ALA
209
n
211
ALA
209
B
LEU
210
n
212
LEU
210
B
LEU
211
n
213
LEU
211
B
ALA
212
n
214
ALA
212
B
GLY
213
n
215
GLY
213
B
PHE
214
n
216
PHE
214
B
ALA
215
n
217
ALA
215
B
PRO
216
n
218
PRO
216
B
VAL
217
n
219
VAL
217
B
SER
218
n
220
SER
218
B
LEU
219
n
221
LEU
219
B
GLY
220
n
222
GLY
220
B
GLU
221
n
223
GLU
221
B
SER
222
n
224
SER
222
B
ARG
223
n
225
ARG
223
B
LEU
224
n
226
LEU
224
B
ARG
225
n
227
ARG
225
B
THR
226
n
228
THR
226
B
GLU
227
n
229
GLU
227
B
THR
228
n
230
THR
228
B
ALA
229
n
231
ALA
229
B
GLY
230
n
232
GLY
230
B
LEU
231
n
233
LEU
231
B
VAL
232
n
234
VAL
232
B
ALA
233
n
235
ALA
233
B
CYS
234
n
236
CYS
234
B
GLN
235
n
237
GLN
235
B
TRP
236
n
238
TRP
236
B
ILE
237
n
239
ILE
237
B
HIS
238
n
240
HIS
238
B
THR
239
n
241
THR
239
B
LEU
240
n
242
LEU
240
B
GLN
241
n
243
GLN
241
B
ALA
242
n
244
ALA
242
B
CYS
243
n
245
CYS
243
B
TYR
244
n
246
TYR
244
B
ARG
245
n
247
ARG
245
B
n
248
246
B
n
249
247
B
n
250
248
B
n
251
249
B
n
252
250
B
n
253
251
B
n
254
252
B
n
255
253
B
n
256
254
B
n
257
255
B
software_defined_assembly
PISA
2
dimeric
3990
-9
22300
A
MSE
31
SELENOMETHIONINE
A
MSE
33
MET
A
MSE
90
SELENOMETHIONINE
A
MSE
92
MET
A
MSE
93
SELENOMETHIONINE
A
MSE
95
MET
A
MSE
131
SELENOMETHIONINE
A
MSE
133
MET
B
MSE
31
SELENOMETHIONINE
B
MSE
33
MET
B
MSE
90
SELENOMETHIONINE
B
MSE
92
MET
B
MSE
93
SELENOMETHIONINE
B
MSE
95
MET
B
MSE
131
SELENOMETHIONINE
B
MSE
133
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
6
A
N
PHE
8
A
O
ARG
38
A
O
ARG
40
A
N
LEU
37
A
N
LEU
39
A
O
ALA
49
A
O
ALA
51
A
N
PHE
46
A
N
PHE
48
A
O
GLU
67
A
O
GLU
69
A
O
ARG
143
A
O
ARG
145
A
N
PHE
107
A
N
PHE
109
A
O
VAL
106
A
O
VAL
108
A
N
ILE
81
A
N
ILE
83
A
N
ALA
80
A
N
ALA
82
A
O
ILE
193
A
O
ILE
195
A
O
LEU
192
A
O
LEU
194
A
N
LEU
162
A
N
LEU
164
A
N
ILE
163
A
N
ILE
165
A
O
ALA
215
A
O
ALA
217
B
N
PHE
6
B
N
PHE
8
B
O
ARG
38
B
O
ARG
40
B
N
LEU
37
B
N
LEU
39
B
O
ALA
49
B
O
ALA
51
B
N
GLU
52
B
N
GLU
54
B
O
TYR
60
B
O
TYR
62
B
O
ARG
143
B
O
ARG
145
B
N
PHE
107
B
N
PHE
109
B
O
VAL
106
B
O
VAL
108
B
N
ILE
81
B
N
ILE
83
B
N
ALA
80
B
N
ALA
82
B
O
ILE
195
B
O
ILE
197
B
O
LEU
194
B
O
LEU
196
B
N
LEU
162
B
N
LEU
164
B
N
ARG
161
B
N
ARG
163
B
O
ALA
215
B
O
ALA
217
1
A
NE
ARG
171
A
NE
ARG
173
1
Y
1
A
CZ
ARG
171
A
CZ
ARG
173
1
Y
1
A
NH1
ARG
171
A
NH1
ARG
173
1
Y
1
A
NH2
ARG
171
A
NH2
ARG
173
1
Y
1
B
CG
LEU
3
B
CG
LEU
5
1
Y
1
B
CD1
LEU
3
B
CD1
LEU
5
1
Y
1
B
CD2
LEU
3
B
CD2
LEU
5
1
Y
1
B
CD1
TYR
244
B
CD1
TYR
246
1
Y
1
B
CD2
TYR
244
B
CD2
TYR
246
1
Y
1
B
CE1
TYR
244
B
CE1
TYR
246
1
Y
1
B
CE2
TYR
244
B
CE2
TYR
246
1
Y
1
B
CZ
TYR
244
B
CZ
TYR
246
1
Y
1
B
OH
TYR
244
B
OH
TYR
246
1
Y
1
B
CZ
ARG
245
B
CZ
ARG
247
1
Y
1
B
NH1
ARG
245
B
NH1
ARG
247
1
Y
1
B
NH2
ARG
245
B
NH2
ARG
247
1
Y
1
A
MSE
-1
A
MSE
1
1
Y
1
A
SER
0
A
SER
2
1
Y
1
A
LEU
1
A
LEU
3
1
Y
1
A
SER
2
A
SER
4
1
Y
1
A
ALA
172
A
ALA
174
1
Y
1
A
GLU
173
A
GLU
175
1
Y
1
A
ILE
174
A
ILE
176
1
Y
1
A
THR
175
A
THR
177
1
Y
1
A
GLN
176
A
GLN
178
1
Y
1
A
GLU
248
A
GLU
250
1
Y
1
A
GLY
249
A
GLY
251
1
Y
1
A
HIS
250
A
HIS
252
1
Y
1
A
HIS
251
A
HIS
253
1
Y
1
A
HIS
252
A
HIS
254
1
Y
1
A
HIS
253
A
HIS
255
1
Y
1
A
HIS
254
A
HIS
256
1
Y
1
A
HIS
255
A
HIS
257
1
Y
1
B
MSE
-1
B
MSE
1
1
Y
1
B
SER
0
B
SER
2
1
Y
1
B
LEU
1
B
LEU
3
1
Y
1
B
SER
2
B
SER
4
1
Y
1
B
ALA
172
B
ALA
174
1
Y
1
B
GLU
173
B
GLU
175
1
Y
1
B
ILE
174
B
ILE
176
1
Y
1
B
THR
175
B
THR
177
1
Y
1
B
GLN
176
B
GLN
178
1
Y
1
B
ILE
246
B
ILE
248
1
Y
1
B
GLY
247
B
GLY
249
1
Y
1
B
GLU
248
B
GLU
250
1
Y
1
B
GLY
249
B
GLY
251
1
Y
1
B
HIS
250
B
HIS
252
1
Y
1
B
HIS
251
B
HIS
253
1
Y
1
B
HIS
252
B
HIS
254
1
Y
1
B
HIS
253
B
HIS
255
1
Y
1
B
HIS
254
B
HIS
256
1
Y
1
B
HIS
255
B
HIS
257
1
Y
1
9.32
1.50
119.30
128.62
A
A
A
C
N
CA
LEU
PRO
PRO
3
4
4
Y
1
-13.11
2.10
128.40
115.29
A
A
A
C
N
CD
LEU
PRO
PRO
3
4
4
Y
1
A
PRO
4
-35.35
147.46
1
A
ASP
75
72.74
-176.76
1
A
ASP
75
72.74
-175.27
1
A
VAL
166
-126.27
-53.11
1
A
VAL
170
-66.71
80.49
1
A
ARG
178
-93.04
-66.90
1
A
ASP
200
63.28
171.70
1
B
PRO
72
-79.70
24.13
1
B
ASP
75
63.71
-171.17
1
B
PHE
184
-132.64
-30.48
1
B
ASP
200
71.52
169.87
68.36
32.555
13.91
-0.650
0.000
0.000
0.900
0.000
-0.250
0.947
0.913
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS, U VALUES REFINED INDIVIDUALLY
0.266
0.210
0.213
2.000
50
1723
33986
5.100
99.810
0.266
0.210
1.00
0.30
0.826
4.470
0.127
0.212
0.190
RANDOM
1
THROUGHOUT
0.00
SAD
0.212
0.190
0.800
0.800
1.400
MAXIMUM LIKELIHOOD
MASK
2.000
50
136
3994
38
0
3820
0.016
0.022
3939
1.491
1.977
5343
6.324
5.000
486
33.305
22.652
181
16.542
15.000
684
17.017
15.000
45
0.103
0.200
597
0.008
0.021
2987
0.974
1.500
2417
1.785
2.000
3913
2.571
3.000
1522
4.320
4.500
1430
0.267
0.252
2.052
127
2287
2414
20
97.570
2.000
50
3KW2
34052
34052
0.102
0.146
1
19
11.6
100
0.9
2.0
2.07
2.6
0.82
11.7
100
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.005
data collection
CBASS
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHENIX
Probable r-RNA methyltransferase
Crystal structure of probable rRNA-methyltransferase from Porphyromonas gingivalis
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
PRO
18
A
PRO
20
HELX_P
A
ARG
27
A
ARG
29
1
1
10
A
GLN
86
A
GLN
88
HELX_P
A
GLY
101
A
GLY
103
1
2
16
A
LYS
119
A
LYS
121
HELX_P
A
SER
134
A
SER
136
1
3
16
A
ILE
148
A
ILE
150
HELX_P
A
THR
155
A
THR
157
1
4
8
A
TYR
180
A
TYR
182
HELX_P
A
PHE
184
A
PHE
186
5
5
5
A
SER
202
A
SER
204
HELX_P
A
GLY
213
A
GLY
215
1
6
12
A
ARG
225
A
ARG
227
HELX_P
A
TYR
244
A
TYR
246
1
7
20
B
PRO
18
B
PRO
20
HELX_P
B
ARG
27
B
ARG
29
1
8
10
B
GLN
86
B
GLN
88
HELX_P
B
GLY
101
B
GLY
103
1
9
16
B
LYS
119
B
LYS
121
HELX_P
B
SER
134
B
SER
136
1
10
16
B
ILE
148
B
ILE
150
HELX_P
B
THR
155
B
THR
157
1
11
8
B
TYR
180
B
TYR
182
HELX_P
B
PHE
184
B
PHE
186
5
12
5
B
SER
202
B
SER
204
HELX_P
B
GLY
213
B
GLY
215
1
13
12
B
ARG
225
B
ARG
227
HELX_P
B
TYR
244
B
TYR
246
1
14
20
covale
1.331
both
A
ARG
30
A
C
ARG
32
1_555
A
MSE
31
A
N
MSE
33
1_555
covale
1.331
both
A
MSE
31
A
C
MSE
33
1_555
A
GLN
32
A
N
GLN
34
1_555
covale
1.336
both
A
ARG
89
A
C
ARG
91
1_555
A
MSE
90
A
N
MSE
92
1_555
covale
1.330
both
A
MSE
90
A
C
MSE
92
1_555
A
GLU
91
A
N
GLU
93
1_555
covale
1.328
both
A
TRP
92
A
C
TRP
94
1_555
A
MSE
93
A
N
MSE
95
1_555
covale
1.323
both
A
MSE
93
A
C
MSE
95
1_555
A
LEU
94
A
N
LEU
96
1_555
covale
1.326
both
A
ALA
130
A
C
ALA
132
1_555
A
MSE
131
A
N
MSE
133
1_555
covale
1.323
both
A
MSE
131
A
C
MSE
133
1_555
A
LYS
132
A
N
LYS
134
1_555
covale
1.327
both
B
ARG
30
B
C
ARG
32
1_555
B
MSE
31
B
N
MSE
33
1_555
covale
1.325
both
B
MSE
31
B
C
MSE
33
1_555
B
GLN
32
B
N
GLN
34
1_555
covale
1.326
both
A
B
ARG
89
B
C
ARG
91
1_555
B
MSE
90
B
N
MSE
92
1_555
covale
1.331
both
B
B
ARG
89
B
C
ARG
91
1_555
B
MSE
90
B
N
MSE
92
1_555
covale
1.330
both
A
B
MSE
90
B
C
MSE
92
1_555
B
GLU
91
B
N
GLU
93
1_555
covale
1.333
both
B
B
MSE
90
B
C
MSE
92
1_555
B
GLU
91
B
N
GLU
93
1_555
covale
1.325
both
B
TRP
92
B
C
TRP
94
1_555
B
MSE
93
B
N
MSE
95
1_555
covale
1.316
both
B
MSE
93
B
C
MSE
95
1_555
B
LEU
94
B
N
LEU
96
1_555
covale
1.327
both
B
ALA
130
B
C
ALA
132
1_555
B
MSE
131
B
N
MSE
133
1_555
covale
1.337
both
B
MSE
131
B
C
MSE
133
1_555
B
LYS
132
B
N
LYS
134
1_555
TRANSFERASE
structural genomics, unknown function, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, TRANSFERASE
B2RH75_PORG3
UNP
1
2
B2RH75
SLPLFYAPDIEQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQKPWRDRITIAI
APTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIADTPKAAVR
LIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEGDFSPSEVESALLAGFAPVSLGESRLRTETAGLVACQWIHTLQ
ACYRIGE
2
248
3KW2
2
248
B2RH75
A
1
4
250
2
248
3KW2
2
248
B2RH75
B
1
4
250
1
expression tag
MSE
-1
3KW2
A
B2RH75
UNP
1
1
expression tag
SER
0
3KW2
A
B2RH75
UNP
2
1
expression tag
LEU
1
3KW2
A
B2RH75
UNP
3
1
expression tag
GLY
249
3KW2
A
B2RH75
UNP
251
1
expression tag
HIS
250
3KW2
A
B2RH75
UNP
252
1
expression tag
HIS
251
3KW2
A
B2RH75
UNP
253
1
expression tag
HIS
252
3KW2
A
B2RH75
UNP
254
1
expression tag
HIS
253
3KW2
A
B2RH75
UNP
255
1
expression tag
HIS
254
3KW2
A
B2RH75
UNP
256
1
expression tag
HIS
255
3KW2
A
B2RH75
UNP
257
2
expression tag
MSE
-1
3KW2
B
B2RH75
UNP
1
2
expression tag
SER
0
3KW2
B
B2RH75
UNP
2
2
expression tag
LEU
1
3KW2
B
B2RH75
UNP
3
2
expression tag
GLY
249
3KW2
B
B2RH75
UNP
251
2
expression tag
HIS
250
3KW2
B
B2RH75
UNP
252
2
expression tag
HIS
251
3KW2
B
B2RH75
UNP
253
2
expression tag
HIS
252
3KW2
B
B2RH75
UNP
254
2
expression tag
HIS
253
3KW2
B
B2RH75
UNP
255
2
expression tag
HIS
254
3KW2
B
B2RH75
UNP
256
2
expression tag
HIS
255
3KW2
B
B2RH75
UNP
257
4
6
4
6
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
A
LEU
5
A
LEU
7
A
TYR
7
A
TYR
9
A
ARG
36
A
ARG
38
A
THR
40
A
THR
42
A
SER
45
A
SER
47
A
ALA
54
A
ALA
56
A
CYS
59
A
CYS
61
A
SER
68
A
SER
70
A
VAL
141
A
VAL
143
A
PRO
147
A
PRO
149
A
GLU
104
A
GLU
106
A
GLU
109
A
GLU
111
A
ILE
77
A
ILE
79
A
ILE
81
A
ILE
83
A
VAL
191
A
VAL
193
A
ILE
195
A
ILE
197
A
VAL
160
A
VAL
162
A
ALA
164
A
ALA
166
A
ALA
215
A
ALA
217
A
VAL
217
A
VAL
219
B
LEU
5
B
LEU
7
B
TYR
7
B
TYR
9
B
ARG
36
B
ARG
38
B
THR
40
B
THR
42
B
SER
45
B
SER
47
B
ALA
54
B
ALA
56
B
CYS
59
B
CYS
61
B
SER
68
B
SER
70
B
VAL
141
B
VAL
143
B
PRO
147
B
PRO
149
B
GLU
104
B
GLU
106
B
GLU
109
B
GLU
111
B
ILE
77
B
ILE
79
B
ILE
81
B
ILE
83
B
VAL
191
B
VAL
193
B
ILE
195
B
ILE
197
B
VAL
160
B
VAL
162
B
ALA
164
B
ALA
166
B
ALA
215
B
ALA
217
B
VAL
217
B
VAL
219
BINDING SITE FOR RESIDUE ADN A 300
A
ADN
300
Software
15
BINDING SITE FOR RESIDUE ADN B 300
B
ADN
300
Software
14
A
ALA
164
A
ALA
166
15
1_555
A
TYR
165
A
TYR
167
15
1_555
A
VAL
166
A
VAL
168
15
1_555
A
ARG
178
A
ARG
180
15
1_555
A
ILE
195
A
ILE
197
15
1_555
A
GLY
196
A
GLY
198
15
1_555
A
PRO
197
A
PRO
199
15
1_555
A
ASP
200
A
ASP
202
15
1_555
A
SER
218
A
SER
220
15
1_555
A
LEU
219
A
LEU
221
15
1_555
A
GLY
220
A
GLY
222
15
1_555
A
SER
222
A
SER
224
15
1_555
A
LEU
224
A
LEU
226
15
1_555
A
THR
226
A
THR
228
15
1_555
A
ALA
229
A
ALA
231
15
1_555
B
ALA
164
B
ALA
166
14
1_555
B
TYR
165
B
TYR
167
14
1_555
B
ARG
178
B
ARG
180
14
1_555
B
ILE
195
B
ILE
197
14
1_555
B
GLY
196
B
GLY
198
14
1_555
B
PRO
197
B
PRO
199
14
1_555
B
ASP
200
B
ASP
202
14
1_555
B
VAL
217
B
VAL
219
14
1_555
B
SER
218
B
SER
220
14
1_555
B
LEU
219
B
LEU
221
14
1_555
B
GLY
220
B
GLY
222
14
1_555
B
LEU
224
B
LEU
226
14
1_555
B
THR
226
B
THR
228
14
1_555
B
ALA
229
B
ALA
231
14
1_555
19
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