0.022884
0.000000
0.000000
0.000000
0.021616
0.000000
0.000000
0.000000
0.007661
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
43.698
46.261
130.533
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of Protein of unknown function (NP_812423.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution
10.2210/pdb3kzt/pdb
pdb_00003kzt
100
1
Flat mirror (vertical focusing)
CCD
2009-06-10
MARMOSAIC 325 mm CCD
Single crystal Si(111) bent monochromator (horizontal focusing)
MAD
M
x-ray
1
0.91837
1.0
0.97916
1.0
BL11-1
SSRL
0.91837,0.97916
SYNCHROTRON
SSRL BEAMLINE BL11-1
16098.150
uncharacterized protein
2
man
polymer
62.068
1,2-ETHANEDIOL
5
syn
non-polymer
96.063
SULFATE ION
2
syn
non-polymer
18.015
water
118
nat
water
no
yes
GKN(MSE)DTSAEPADVQANVSDSSRIEQEAIG(MSE)IEDFYEAYAASF(MSE)STGKEALALGDSIKQKFLTKELIEK
VDRLIEATDADPIIRAQDLGEND(MSE)KTLSVKHLNDNWYEVNYTSAKGSQYERAVSIPVRVVNVDGQYLIDDITPEN
GKNMDTSAEPADVQANVSDSSRIEQEAIGMIEDFYEAYAASFMSTGKEALALGDSIKQKFLTKELIEKVDRLIEATDADP
IIRAQDLGENDMKTLSVKHLNDNWYEVNYTSAKGSQYERAVSIPVRVVNVDGQYLIDDITPEN
A,B
392985
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
VPI-5482
sample
BT_3511
226186
Bacteroides thetaiotaomicron
562
Escherichia Coli
HK100
Plasmid
SpeedET
1
2.05
39.97
VAPOR DIFFUSION, SITTING DROP
5.8
3.0000M ammonium sulfate, 0.1M MES pH 5.8, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
software
software
struct_conn
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Advisory
Version format compliance
Refinement description
Data collection
Derived calculations
Refinement description
Database references
Derived calculations
1
0
2010-02-02
1
1
2011-07-13
1
2
2017-11-01
1
3
2019-07-17
1
4
2023-02-01
_software.classification
_software.name
_software.classification
_software.contact_author
_software.contact_author_email
_software.language
_software.location
_software.name
_software.type
_software.version
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2009-12-08
REL
REL
EDO
1,2-ETHANEDIOL
SO4
SULFATE ION
HOH
water
SEQUENCE THIS CONSTRUCT (RESIDUES 26-167) WAS EXPRESSED WITH THE PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
EDO
201
2
EDO
EDO
201
A
EDO
202
2
EDO
EDO
202
A
SO4
203
3
SO4
SO4
203
A
SO4
204
3
SO4
SO4
204
A
EDO
201
2
EDO
EDO
201
B
EDO
202
2
EDO
EDO
202
B
EDO
203
2
EDO
EDO
203
B
HOH
205
4
HOH
HOH
205
A
HOH
206
4
HOH
HOH
206
A
HOH
207
4
HOH
HOH
207
A
HOH
208
4
HOH
HOH
208
A
HOH
209
4
HOH
HOH
209
A
HOH
210
4
HOH
HOH
210
A
HOH
211
4
HOH
HOH
211
A
HOH
212
4
HOH
HOH
212
A
HOH
213
4
HOH
HOH
213
A
HOH
214
4
HOH
HOH
214
A
HOH
215
4
HOH
HOH
215
A
HOH
216
4
HOH
HOH
216
A
HOH
217
4
HOH
HOH
217
A
HOH
218
4
HOH
HOH
218
A
HOH
219
4
HOH
HOH
219
A
HOH
220
4
HOH
HOH
220
A
HOH
221
4
HOH
HOH
221
A
HOH
222
4
HOH
HOH
222
A
HOH
223
4
HOH
HOH
223
A
HOH
224
4
HOH
HOH
224
A
HOH
225
4
HOH
HOH
225
A
HOH
226
4
HOH
HOH
226
A
HOH
227
4
HOH
HOH
227
A
HOH
228
4
HOH
HOH
228
A
HOH
229
4
HOH
HOH
229
A
HOH
230
4
HOH
HOH
230
A
HOH
231
4
HOH
HOH
231
A
HOH
232
4
HOH
HOH
232
A
HOH
233
4
HOH
HOH
233
A
HOH
234
4
HOH
HOH
234
A
HOH
235
4
HOH
HOH
235
A
HOH
236
4
HOH
HOH
236
A
HOH
237
4
HOH
HOH
237
A
HOH
238
4
HOH
HOH
238
A
HOH
239
4
HOH
HOH
239
A
HOH
240
4
HOH
HOH
240
A
HOH
241
4
HOH
HOH
241
A
HOH
242
4
HOH
HOH
242
A
HOH
243
4
HOH
HOH
243
A
HOH
244
4
HOH
HOH
244
A
HOH
245
4
HOH
HOH
245
A
HOH
246
4
HOH
HOH
246
A
HOH
247
4
HOH
HOH
247
A
HOH
248
4
HOH
HOH
248
A
HOH
249
4
HOH
HOH
249
A
HOH
250
4
HOH
HOH
250
A
HOH
251
4
HOH
HOH
251
A
HOH
252
4
HOH
HOH
252
A
HOH
253
4
HOH
HOH
253
A
HOH
254
4
HOH
HOH
254
A
HOH
255
4
HOH
HOH
255
A
HOH
256
4
HOH
HOH
256
A
HOH
257
4
HOH
HOH
257
A
HOH
204
4
HOH
HOH
204
B
HOH
205
4
HOH
HOH
205
B
HOH
206
4
HOH
HOH
206
B
HOH
207
4
HOH
HOH
207
B
HOH
208
4
HOH
HOH
208
B
HOH
209
4
HOH
HOH
209
B
HOH
210
4
HOH
HOH
210
B
HOH
211
4
HOH
HOH
211
B
HOH
212
4
HOH
HOH
212
B
HOH
213
4
HOH
HOH
213
B
HOH
214
4
HOH
HOH
214
B
HOH
215
4
HOH
HOH
215
B
HOH
216
4
HOH
HOH
216
B
HOH
217
4
HOH
HOH
217
B
HOH
218
4
HOH
HOH
218
B
HOH
219
4
HOH
HOH
219
B
HOH
220
4
HOH
HOH
220
B
HOH
221
4
HOH
HOH
221
B
HOH
222
4
HOH
HOH
222
B
HOH
223
4
HOH
HOH
223
B
HOH
224
4
HOH
HOH
224
B
HOH
225
4
HOH
HOH
225
B
HOH
226
4
HOH
HOH
226
B
HOH
227
4
HOH
HOH
227
B
HOH
228
4
HOH
HOH
228
B
HOH
229
4
HOH
HOH
229
B
HOH
230
4
HOH
HOH
230
B
HOH
231
4
HOH
HOH
231
B
HOH
232
4
HOH
HOH
232
B
HOH
233
4
HOH
HOH
233
B
HOH
234
4
HOH
HOH
234
B
HOH
235
4
HOH
HOH
235
B
HOH
236
4
HOH
HOH
236
B
HOH
237
4
HOH
HOH
237
B
HOH
238
4
HOH
HOH
238
B
HOH
239
4
HOH
HOH
239
B
HOH
240
4
HOH
HOH
240
B
HOH
241
4
HOH
HOH
241
B
HOH
242
4
HOH
HOH
242
B
HOH
243
4
HOH
HOH
243
B
HOH
244
4
HOH
HOH
244
B
HOH
245
4
HOH
HOH
245
B
HOH
246
4
HOH
HOH
246
B
HOH
247
4
HOH
HOH
247
B
HOH
248
4
HOH
HOH
248
B
HOH
249
4
HOH
HOH
249
B
HOH
250
4
HOH
HOH
250
B
HOH
251
4
HOH
HOH
251
B
HOH
252
4
HOH
HOH
252
B
HOH
253
4
HOH
HOH
253
B
HOH
254
4
HOH
HOH
254
B
HOH
255
4
HOH
HOH
255
B
HOH
256
4
HOH
HOH
256
B
HOH
257
4
HOH
HOH
257
B
HOH
258
4
HOH
HOH
258
B
HOH
259
4
HOH
HOH
259
B
HOH
260
4
HOH
HOH
260
B
HOH
261
4
HOH
HOH
261
B
HOH
262
4
HOH
HOH
262
B
HOH
263
4
HOH
HOH
263
B
HOH
264
4
HOH
HOH
264
B
HOH
265
4
HOH
HOH
265
B
HOH
266
4
HOH
HOH
266
B
HOH
267
4
HOH
HOH
267
B
HOH
268
4
HOH
HOH
268
B
n
1
0
A
n
2
26
A
n
3
27
A
n
4
28
A
n
5
29
A
n
6
30
A
n
7
31
A
n
8
32
A
n
9
33
A
n
10
34
A
ALA
35
n
11
ALA
35
A
ASP
36
n
12
ASP
36
A
VAL
37
n
13
VAL
37
A
GLN
38
n
14
GLN
38
A
ALA
39
n
15
ALA
39
A
ASN
40
n
16
ASN
40
A
VAL
41
n
17
VAL
41
A
SER
42
n
18
SER
42
A
ASP
43
n
19
ASP
43
A
SER
44
n
20
SER
44
A
SER
45
n
21
SER
45
A
ARG
46
n
22
ARG
46
A
ILE
47
n
23
ILE
47
A
GLU
48
n
24
GLU
48
A
GLN
49
n
25
GLN
49
A
GLU
50
n
26
GLU
50
A
ALA
51
n
27
ALA
51
A
ILE
52
n
28
ILE
52
A
GLY
53
n
29
GLY
53
A
MSE
54
n
30
MSE
54
A
ILE
55
n
31
ILE
55
A
GLU
56
n
32
GLU
56
A
ASP
57
n
33
ASP
57
A
PHE
58
n
34
PHE
58
A
TYR
59
n
35
TYR
59
A
GLU
60
n
36
GLU
60
A
ALA
61
n
37
ALA
61
A
TYR
62
n
38
TYR
62
A
ALA
63
n
39
ALA
63
A
ALA
64
n
40
ALA
64
A
SER
65
n
41
SER
65
A
PHE
66
n
42
PHE
66
A
MSE
67
n
43
MSE
67
A
SER
68
n
44
SER
68
A
THR
69
n
45
THR
69
A
GLY
70
n
46
GLY
70
A
LYS
71
n
47
LYS
71
A
GLU
72
n
48
GLU
72
A
ALA
73
n
49
ALA
73
A
LEU
74
n
50
LEU
74
A
ALA
75
n
51
ALA
75
A
LEU
76
n
52
LEU
76
A
GLY
77
n
53
GLY
77
A
ASP
78
n
54
ASP
78
A
SER
79
n
55
SER
79
A
ILE
80
n
56
ILE
80
A
LYS
81
n
57
LYS
81
A
GLN
82
n
58
GLN
82
A
LYS
83
n
59
LYS
83
A
PHE
84
n
60
PHE
84
A
LEU
85
n
61
LEU
85
A
THR
86
n
62
THR
86
A
LYS
87
n
63
LYS
87
A
GLU
88
n
64
GLU
88
A
LEU
89
n
65
LEU
89
A
ILE
90
n
66
ILE
90
A
GLU
91
n
67
GLU
91
A
LYS
92
n
68
LYS
92
A
VAL
93
n
69
VAL
93
A
ASP
94
n
70
ASP
94
A
ARG
95
n
71
ARG
95
A
LEU
96
n
72
LEU
96
A
ILE
97
n
73
ILE
97
A
GLU
98
n
74
GLU
98
A
ALA
99
n
75
ALA
99
A
THR
100
n
76
THR
100
A
ASP
101
n
77
ASP
101
A
ALA
102
n
78
ALA
102
A
ASP
103
n
79
ASP
103
A
PRO
104
n
80
PRO
104
A
ILE
105
n
81
ILE
105
A
ILE
106
n
82
ILE
106
A
ARG
107
n
83
ARG
107
A
ALA
108
n
84
ALA
108
A
GLN
109
n
85
GLN
109
A
ASP
110
n
86
ASP
110
A
LEU
111
n
87
LEU
111
A
GLY
112
n
88
GLY
112
A
GLU
113
n
89
GLU
113
A
ASN
114
n
90
ASN
114
A
ASP
115
n
91
ASP
115
A
MSE
116
n
92
MSE
116
A
LYS
117
n
93
LYS
117
A
THR
118
n
94
THR
118
A
LEU
119
n
95
LEU
119
A
SER
120
n
96
SER
120
A
VAL
121
n
97
VAL
121
A
LYS
122
n
98
LYS
122
A
HIS
123
n
99
HIS
123
A
LEU
124
n
100
LEU
124
A
ASN
125
n
101
ASN
125
A
ASP
126
n
102
ASP
126
A
ASN
127
n
103
ASN
127
A
TRP
128
n
104
TRP
128
A
TYR
129
n
105
TYR
129
A
GLU
130
n
106
GLU
130
A
VAL
131
n
107
VAL
131
A
ASN
132
n
108
ASN
132
A
TYR
133
n
109
TYR
133
A
THR
134
n
110
THR
134
A
SER
135
n
111
SER
135
A
ALA
136
n
112
ALA
136
A
LYS
137
n
113
LYS
137
A
GLY
138
n
114
GLY
138
A
SER
139
n
115
SER
139
A
GLN
140
n
116
GLN
140
A
TYR
141
n
117
TYR
141
A
GLU
142
n
118
GLU
142
A
ARG
143
n
119
ARG
143
A
ALA
144
n
120
ALA
144
A
VAL
145
n
121
VAL
145
A
SER
146
n
122
SER
146
A
ILE
147
n
123
ILE
147
A
PRO
148
n
124
PRO
148
A
VAL
149
n
125
VAL
149
A
ARG
150
n
126
ARG
150
A
VAL
151
n
127
VAL
151
A
VAL
152
n
128
VAL
152
A
ASN
153
n
129
ASN
153
A
VAL
154
n
130
VAL
154
A
ASP
155
n
131
ASP
155
A
GLY
156
n
132
GLY
156
A
GLN
157
n
133
GLN
157
A
TYR
158
n
134
TYR
158
A
LEU
159
n
135
LEU
159
A
ILE
160
n
136
ILE
160
A
ASP
161
n
137
ASP
161
A
ASP
162
n
138
ASP
162
A
ILE
163
n
139
ILE
163
A
THR
164
n
140
THR
164
A
PRO
165
n
141
PRO
165
A
GLU
166
n
142
GLU
166
A
n
143
167
A
n
1
0
B
n
2
26
B
n
3
27
B
n
4
28
B
n
5
29
B
n
6
30
B
n
7
31
B
n
8
32
B
n
9
33
B
n
10
34
B
n
11
35
B
ASP
36
n
12
ASP
36
B
VAL
37
n
13
VAL
37
B
GLN
38
n
14
GLN
38
B
ALA
39
n
15
ALA
39
B
ASN
40
n
16
ASN
40
B
VAL
41
n
17
VAL
41
B
SER
42
n
18
SER
42
B
ASP
43
n
19
ASP
43
B
SER
44
n
20
SER
44
B
SER
45
n
21
SER
45
B
ARG
46
n
22
ARG
46
B
ILE
47
n
23
ILE
47
B
GLU
48
n
24
GLU
48
B
GLN
49
n
25
GLN
49
B
GLU
50
n
26
GLU
50
B
ALA
51
n
27
ALA
51
B
ILE
52
n
28
ILE
52
B
GLY
53
n
29
GLY
53
B
MSE
54
n
30
MSE
54
B
ILE
55
n
31
ILE
55
B
GLU
56
n
32
GLU
56
B
ASP
57
n
33
ASP
57
B
PHE
58
n
34
PHE
58
B
TYR
59
n
35
TYR
59
B
GLU
60
n
36
GLU
60
B
ALA
61
n
37
ALA
61
B
TYR
62
n
38
TYR
62
B
ALA
63
n
39
ALA
63
B
ALA
64
n
40
ALA
64
B
SER
65
n
41
SER
65
B
PHE
66
n
42
PHE
66
B
MSE
67
n
43
MSE
67
B
SER
68
n
44
SER
68
B
THR
69
n
45
THR
69
B
GLY
70
n
46
GLY
70
B
LYS
71
n
47
LYS
71
B
GLU
72
n
48
GLU
72
B
ALA
73
n
49
ALA
73
B
LEU
74
n
50
LEU
74
B
ALA
75
n
51
ALA
75
B
LEU
76
n
52
LEU
76
B
GLY
77
n
53
GLY
77
B
ASP
78
n
54
ASP
78
B
SER
79
n
55
SER
79
B
ILE
80
n
56
ILE
80
B
LYS
81
n
57
LYS
81
B
GLN
82
n
58
GLN
82
B
LYS
83
n
59
LYS
83
B
PHE
84
n
60
PHE
84
B
LEU
85
n
61
LEU
85
B
THR
86
n
62
THR
86
B
LYS
87
n
63
LYS
87
B
GLU
88
n
64
GLU
88
B
LEU
89
n
65
LEU
89
B
ILE
90
n
66
ILE
90
B
GLU
91
n
67
GLU
91
B
LYS
92
n
68
LYS
92
B
VAL
93
n
69
VAL
93
B
ASP
94
n
70
ASP
94
B
ARG
95
n
71
ARG
95
B
LEU
96
n
72
LEU
96
B
ILE
97
n
73
ILE
97
B
GLU
98
n
74
GLU
98
B
ALA
99
n
75
ALA
99
B
THR
100
n
76
THR
100
B
ASP
101
n
77
ASP
101
B
ALA
102
n
78
ALA
102
B
ASP
103
n
79
ASP
103
B
PRO
104
n
80
PRO
104
B
ILE
105
n
81
ILE
105
B
ILE
106
n
82
ILE
106
B
ARG
107
n
83
ARG
107
B
ALA
108
n
84
ALA
108
B
GLN
109
n
85
GLN
109
B
ASP
110
n
86
ASP
110
B
LEU
111
n
87
LEU
111
B
GLY
112
n
88
GLY
112
B
GLU
113
n
89
GLU
113
B
ASN
114
n
90
ASN
114
B
ASP
115
n
91
ASP
115
B
MSE
116
n
92
MSE
116
B
LYS
117
n
93
LYS
117
B
THR
118
n
94
THR
118
B
LEU
119
n
95
LEU
119
B
SER
120
n
96
SER
120
B
VAL
121
n
97
VAL
121
B
LYS
122
n
98
LYS
122
B
HIS
123
n
99
HIS
123
B
LEU
124
n
100
LEU
124
B
ASN
125
n
101
ASN
125
B
ASP
126
n
102
ASP
126
B
ASN
127
n
103
ASN
127
B
TRP
128
n
104
TRP
128
B
TYR
129
n
105
TYR
129
B
GLU
130
n
106
GLU
130
B
VAL
131
n
107
VAL
131
B
ASN
132
n
108
ASN
132
B
TYR
133
n
109
TYR
133
B
THR
134
n
110
THR
134
B
SER
135
n
111
SER
135
B
ALA
136
n
112
ALA
136
B
LYS
137
n
113
LYS
137
B
GLY
138
n
114
GLY
138
B
SER
139
n
115
SER
139
B
GLN
140
n
116
GLN
140
B
TYR
141
n
117
TYR
141
B
GLU
142
n
118
GLU
142
B
ARG
143
n
119
ARG
143
B
ALA
144
n
120
ALA
144
B
VAL
145
n
121
VAL
145
B
SER
146
n
122
SER
146
B
ILE
147
n
123
ILE
147
B
PRO
148
n
124
PRO
148
B
VAL
149
n
125
VAL
149
B
ARG
150
n
126
ARG
150
B
VAL
151
n
127
VAL
151
B
VAL
152
n
128
VAL
152
B
ASN
153
n
129
ASN
153
B
VAL
154
n
130
VAL
154
B
ASP
155
n
131
ASP
155
B
GLY
156
n
132
GLY
156
B
GLN
157
n
133
GLN
157
B
TYR
158
n
134
TYR
158
B
LEU
159
n
135
LEU
159
B
ILE
160
n
136
ILE
160
B
ASP
161
n
137
ASP
161
B
ASP
162
n
138
ASP
162
B
ILE
163
n
139
ILE
163
B
THR
164
n
140
THR
164
B
PRO
165
n
141
PRO
165
B
n
142
166
B
n
143
167
B
6.1699
0.9820
4.4853
0.9896
0.4254
5.5955
-0.0798
0.1761
0.0690
-0.0228
0.0768
-0.1154
-0.1014
0.2357
0.0030
0.2593
-0.0279
0.0162
0.2108
-0.0229
0.0513
refined
30.8360
15.1990
12.8930
X-RAY DIFFRACTION
11.3219
-1.8755
2.0792
2.7397
-1.1606
1.7702
-0.4919
0.2625
1.4672
-0.2333
0.1395
-0.4355
-0.5440
0.1950
0.3524
0.3756
-0.0887
-0.0678
0.2019
-0.0344
0.2315
refined
36.2890
27.2180
19.8190
X-RAY DIFFRACTION
1.8241
0.2390
4.3431
9.0289
0.2495
10.5043
0.0227
-0.0581
-0.1059
-0.0828
0.1458
-0.2164
-0.0206
0.1100
-0.1686
0.2625
-0.0719
0.0059
0.4784
0.0786
0.0712
refined
36.8260
15.4040
27.6160
X-RAY DIFFRACTION
3.4734
-1.8329
3.9434
2.0385
-3.0746
6.0771
-0.0907
-0.2570
-0.1067
0.0257
0.1634
0.1104
-0.1430
-0.2722
-0.0727
0.2657
0.0177
0.0231
0.2181
-0.0270
0.0341
refined
26.8910
16.3440
21.0550
X-RAY DIFFRACTION
0.5391
0.2986
-0.2251
6.5258
-3.0160
2.5106
-0.0156
0.0082
-0.0708
0.0484
0.2385
0.1026
0.0580
-0.3442
-0.2229
0.3041
-0.0254
0.0009
0.1725
0.0052
0.0710
refined
45.5410
-9.4320
24.0440
X-RAY DIFFRACTION
1.2486
1.2875
-1.2673
4.5375
1.3972
3.6900
0.4319
-0.1805
0.2053
0.2349
-0.1615
-0.0524
-0.4484
0.1671
-0.2704
0.3542
-0.0562
0.1336
0.2634
-0.0461
0.1963
refined
50.9680
10.8040
14.9230
X-RAY DIFFRACTION
1.8162
-0.1845
0.8469
4.2229
-1.9368
3.9242
-0.0498
0.0576
-0.1325
-0.2299
-0.2320
-0.5184
0.2940
0.6699
0.2819
0.3063
0.0316
0.0767
0.3011
0.0310
0.1105
refined
57.9490
2.6220
6.7730
X-RAY DIFFRACTION
1.4565
-1.3293
1.9547
2.1542
-2.8645
5.3480
0.1081
0.0141
-0.0391
-0.1413
0.0012
0.1099
0.3121
0.1187
-0.1094
0.2524
-0.0053
0.0206
0.1959
0.0042
0.0258
refined
46.3930
-4.0030
11.5280
X-RAY DIFFRACTION
A
35
A
74
X-RAY DIFFRACTION
1
A
75
A
100
X-RAY DIFFRACTION
2
A
101
A
116
X-RAY DIFFRACTION
3
A
117
A
166
X-RAY DIFFRACTION
4
B
36
B
62
X-RAY DIFFRACTION
5
B
63
B
87
X-RAY DIFFRACTION
6
B
88
B
109
X-RAY DIFFRACTION
7
B
110
B
165
X-RAY DIFFRACTION
8
author_and_software_defined_assembly
PISA
2
dimeric
2000
-28
15330
A
MSE
54
SELENOMETHIONINE
A
MSE
30
MET
A
MSE
67
SELENOMETHIONINE
A
MSE
43
MET
A
MSE
116
SELENOMETHIONINE
A
MSE
92
MET
B
MSE
54
SELENOMETHIONINE
B
MSE
30
MET
B
MSE
67
SELENOMETHIONINE
B
MSE
43
MET
B
MSE
116
SELENOMETHIONINE
B
MSE
92
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
120
A
N
SER
96
A
O
ASN
132
A
O
ASN
108
A
N
SER
135
A
N
SER
111
A
O
ARG
143
A
O
ARG
119
A
N
VAL
152
A
N
VAL
128
A
O
LEU
159
A
O
LEU
135
B
N
LYS
122
B
N
LYS
98
B
O
GLU
130
B
O
GLU
106
B
N
TYR
129
B
N
TYR
105
B
O
VAL
149
B
O
VAL
125
B
N
ARG
150
B
N
ARG
126
B
O
ASP
162
B
O
ASP
138
1
A
OG
SER
68
A
OG
SER
44
1
Y
1
A
OG1
THR
69
A
OG1
THR
45
1
Y
1
A
CG2
THR
69
A
CG2
THR
45
1
Y
1
A
CE
LYS
71
A
CE
LYS
47
1
Y
1
A
NZ
LYS
71
A
NZ
LYS
47
1
Y
1
A
CG
LYS
87
A
CG
LYS
63
1
Y
1
A
CD
LYS
87
A
CD
LYS
63
1
Y
1
A
CE
LYS
87
A
CE
LYS
63
1
Y
1
A
NZ
LYS
87
A
NZ
LYS
63
1
Y
1
A
CD
GLU
98
A
CD
GLU
74
1
Y
1
A
OE1
GLU
98
A
OE1
GLU
74
1
Y
1
A
OE2
GLU
98
A
OE2
GLU
74
1
Y
1
B
CE
LYS
117
B
CE
LYS
93
1
Y
1
B
NZ
LYS
117
B
NZ
LYS
93
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
LYS
26
A
LYS
2
1
Y
1
A
ASN
27
A
ASN
3
1
Y
1
A
MSE
28
A
MSE
4
1
Y
1
A
ASP
29
A
ASP
5
1
Y
1
A
THR
30
A
THR
6
1
Y
1
A
SER
31
A
SER
7
1
Y
1
A
ALA
32
A
ALA
8
1
Y
1
A
GLU
33
A
GLU
9
1
Y
1
A
PRO
34
A
PRO
10
1
Y
1
A
ASN
167
A
ASN
143
1
Y
1
B
GLY
0
B
GLY
1
1
Y
1
B
LYS
26
B
LYS
2
1
Y
1
B
ASN
27
B
ASN
3
1
Y
1
B
MSE
28
B
MSE
4
1
Y
1
B
ASP
29
B
ASP
5
1
Y
1
B
THR
30
B
THR
6
1
Y
1
B
SER
31
B
SER
7
1
Y
1
B
ALA
32
B
ALA
8
1
Y
1
B
GLU
33
B
GLU
9
1
Y
1
B
PRO
34
B
PRO
10
1
Y
1
B
ALA
35
B
ALA
11
1
Y
1
B
GLU
166
B
GLU
142
1
Y
1
B
ASN
167
B
ASN
143
1
Y
1
A
ASP
36
52.51
76.60
1
A
LEU
124
-99.96
-75.51
1
A
ASP
126
53.36
-126.17
1
A
PRO
165
-34.14
132.75
1
B
LEU
124
-102.56
-69.48
1
B
ASP
126
52.76
-123.16
1
B
THR
164
53.62
70.15
68.00
18.402
2.00
-0.480
0.000
0.000
1.620
0.000
-1.140
0.943
0.907
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. ETHYLENE GLYCOL (EDO) AND SULFATE IONS (SO4) FROM THE CRYSTALLIZATION/CRYOPROTECTANT SOLUTIONS HAVE BEEN MODELED INTO THE SOLVENT STRUCTURE. 5. TLS GROUPS WERE ASSIGNED WITH THE AID OF THE TLSMD SERVER.
0.268
0.222
0.224
2.100
28.560
805
16067
5.000
99.890
1.00
0.22
14.661
0.170
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MAD
0.299
0.224
0.800
0.800
1.200
MAXIMUM LIKELIHOOD WITH PHASES
MASK
2.100
28.560
118
2192
30
0
2044
0.017
0.022
2264
0.004
0.020
1522
1.289
1.969
3089
1.188
3.000
3757
4.127
5.000
306
31.422
25.798
119
12.491
15.000
417
10.635
15.000
14
0.100
0.200
349
0.004
0.020
2573
0.002
0.020
427
0.282
1.500
1379
0.057
1.500
554
0.526
2.000
2251
0.856
3.000
885
1.344
4.500
816
1
A
1
744
X-RAY DIFFRACTION
MEDIUM POSITIONAL
0.240
0.500
1
A
1
851
X-RAY DIFFRACTION
LOOSE POSITIONAL
0.470
5.000
1
A
1
744
X-RAY DIFFRACTION
MEDIUM THERMAL
0.300
2.000
1
A
1
851
X-RAY DIFFRACTION
LOOSE THERMAL
0.290
10.000
0.314
0.298
2.154
66
1059
1125
20
100.000
30.795
2.10
28.560
3KZT
16114
0.108
0.108
1
9.200
3.400
99.900
0.629
2.10
2.15
1.2
3906
1131
0.629
1
3.50
100.00
0.520
2.15
2.21
1.5
4001
1157
0.520
1
3.50
100.00
0.493
2.21
2.28
1.6
3850
1113
0.493
1
3.50
100.00
0.410
2.28
2.35
1.8
3705
1076
0.410
1
3.40
100.00
0.378
2.35
2.42
2.0
3634
1051
0.378
1
3.50
99.90
0.320
2.42
2.51
2.4
3453
998
0.320
1
3.50
100.00
0.270
2.51
2.60
2.8
3418
991
0.270
1
3.40
100.00
0.237
2.60
2.71
3.2
3240
939
0.237
1
3.50
100.00
0.186
2.71
2.83
4.1
3093
904
0.186
1
3.40
100.00
0.147
2.83
2.97
4.8
3001
877
0.147
1
3.40
100.00
0.129
2.97
3.13
5.5
2844
838
0.129
1
3.40
100.00
0.102
3.13
3.32
6.9
2696
797
0.102
1
3.40
100.00
0.082
3.32
3.55
8.2
2546
752
0.082
1
3.40
99.90
0.070
3.55
3.83
8.6
2319
689
0.070
1
3.40
99.80
0.059
3.83
4.20
10.3
2172
651
0.059
1
3.30
99.90
0.051
4.20
4.70
11.8
1936
582
0.051
1
3.30
99.80
0.055
4.70
5.42
10.7
1706
531
0.055
1
3.20
99.80
0.061
5.42
6.64
9.8
1447
458
0.061
1
3.20
99.70
0.047
6.64
9.39
11.3
1125
363
0.047
1
3.10
99.80
0.037
9.39
28.56
13.0
597
216
0.037
1
2.80
95.60
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.5.0053
refinement
P.D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
5/04/2004
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.2.5
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data reduction
MOSFLM
phasing
SHELXD
phasing
autoSHARP
Crystal structure of Protein of unknown function (NP_812423.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
2
N
N
2
N
N
2
N
N
4
N
N
4
N
N
A
ASP
36
A
ASP
12
HELX_P
A
PHE
66
A
PHE
42
1
1
31
A
GLY
70
A
GLY
46
HELX_P
A
LEU
85
A
LEU
61
1
2
16
A
THR
86
A
THR
62
HELX_P
A
THR
100
A
THR
76
1
3
15
A
ASP
115
A
ASP
91
HELX_P
A
LEU
119
A
LEU
95
5
4
5
B
ASP
36
B
ASP
12
HELX_P
B
PHE
66
B
PHE
42
1
5
31
B
GLY
70
B
GLY
46
HELX_P
B
LEU
85
B
LEU
61
1
6
16
B
THR
86
B
THR
62
HELX_P
B
THR
100
B
THR
76
1
7
15
B
ASP
115
B
ASP
91
HELX_P
B
LEU
119
B
LEU
95
5
8
5
covale
1.321
both
A
GLY
53
A
C
GLY
29
1_555
A
MSE
54
A
N
MSE
30
1_555
covale
1.340
both
A
MSE
54
A
C
MSE
30
1_555
A
ILE
55
A
N
ILE
31
1_555
covale
1.355
both
A
PHE
66
A
C
PHE
42
1_555
A
MSE
67
A
N
MSE
43
1_555
covale
1.343
both
A
MSE
67
A
C
MSE
43
1_555
A
SER
68
A
N
SER
44
1_555
covale
1.336
both
A
ASP
115
A
C
ASP
91
1_555
A
MSE
116
A
N
MSE
92
1_555
covale
1.345
both
A
MSE
116
A
C
MSE
92
1_555
A
LYS
117
A
N
LYS
93
1_555
covale
1.327
both
B
GLY
53
B
C
GLY
29
1_555
B
MSE
54
B
N
MSE
30
1_555
covale
1.331
both
B
MSE
54
B
C
MSE
30
1_555
B
ILE
55
B
N
ILE
31
1_555
covale
1.354
both
B
PHE
66
B
C
PHE
42
1_555
B
MSE
67
B
N
MSE
43
1_555
covale
1.349
both
B
MSE
67
B
C
MSE
43
1_555
B
SER
68
B
N
SER
44
1_555
covale
1.332
both
B
ASP
115
B
C
ASP
91
1_555
B
MSE
116
B
N
MSE
92
1_555
covale
1.345
both
B
MSE
116
B
C
MSE
92
1_555
B
LYS
117
B
N
LYS
93
1_555
structural genomics, unknown function
Protein of unknown function, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function
A
B
A
36
A
165
5
B
36
B
165
5
Q8A1Z7_BACTN
UNP
1
26
Q8A1Z7
KNMDTSAEPADVQANVSDSSRIEQEAIGMIEDFYEAYAASFMSTGKEALALGDSIKQKFLTKELIEKVDRLIEATDADPI
IRAQDLGENDMKTLSVKHLNDNWYEVNYTSAKGSQYERAVSIPVRVVNVDGQYLIDDITPEN
26
167
3KZT
26
167
Q8A1Z7
A
1
2
143
26
167
3KZT
26
167
Q8A1Z7
B
1
2
143
1
expression tag
GLY
0
3KZT
A
Q8A1Z7
UNP
1
2
expression tag
GLY
0
3KZT
B
Q8A1Z7
UNP
1
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
120
A
SER
96
A
ASN
125
A
ASN
101
A
TRP
128
A
TRP
104
A
SER
135
A
SER
111
A
ARG
143
A
ARG
119
A
VAL
154
A
VAL
130
A
GLN
157
A
GLN
133
A
ILE
163
A
ILE
139
B
SER
120
B
SER
96
B
ASN
125
B
ASN
101
B
TRP
128
B
TRP
104
B
SER
135
B
SER
111
B
ARG
143
B
ARG
119
B
VAL
154
B
VAL
130
B
GLN
157
B
GLN
133
B
ILE
163
B
ILE
139
BINDING SITE FOR RESIDUE EDO A 201
A
EDO
201
Software
5
BINDING SITE FOR RESIDUE EDO A 202
A
EDO
202
Software
7
BINDING SITE FOR RESIDUE SO4 A 203
A
SO4
203
Software
4
BINDING SITE FOR RESIDUE SO4 A 204
A
SO4
204
Software
4
BINDING SITE FOR RESIDUE EDO B 201
B
EDO
201
Software
1
BINDING SITE FOR RESIDUE EDO B 202
B
EDO
202
Software
3
BINDING SITE FOR RESIDUE EDO B 203
B
EDO
203
Software
5
A
ASN
127
A
ASN
103
5
1_555
A
TYR
129
A
TYR
105
5
1_555
A
VAL
151
A
VAL
127
5
1_555
A
HOH
240
J
HOH
5
1_555
B
TYR
141
B
TYR
117
5
4_455
A
SER
135
A
SER
111
7
1_555
A
ALA
136
A
ALA
112
7
1_555
A
TYR
141
A
TYR
117
7
1_555
A
ARG
143
A
ARG
119
7
1_555
B
ILE
47
B
ILE
23
7
3_755
B
ASN
153
B
ASN
129
7
3_755
B
TYR
158
B
TYR
134
7
3_755
A
TRP
128
A
TRP
104
4
1_555
A
ARG
150
A
ARG
126
4
1_555
A
HOH
250
J
HOH
4
1_555
B
EDO
202
H
EDO
4
1_465
A
ARG
107
A
ARG
83
4
1_555
A
SER
146
A
SER
122
4
1_555
A
PRO
148
A
PRO
124
4
1_555
A
THR
164
A
THR
140
4
1_555
B
ARG
107
B
ARG
83
1
1_555
A
SO4
203
E
SO4
3
1_645
B
TRP
128
B
TRP
104
3
1_555
B
ARG
150
B
ARG
126
3
1_555
A
ILE
47
A
ILE
23
5
4_555
A
ASN
153
A
ASN
129
5
4_555
B
SER
135
B
SER
111
5
1_555
B
TYR
141
B
TYR
117
5
1_555
B
ARG
143
B
ARG
119
5
1_555
19
P 21 21 21