0.022884 0.000000 0.000000 0.000000 0.021616 0.000000 0.000000 0.000000 0.007661 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 43.698 46.261 130.533 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of Protein of unknown function (NP_812423.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution 10.2210/pdb3kzt/pdb pdb_00003kzt 100 1 Flat mirror (vertical focusing) CCD 2009-06-10 MARMOSAIC 325 mm CCD Single crystal Si(111) bent monochromator (horizontal focusing) MAD M x-ray 1 0.91837 1.0 0.97916 1.0 BL11-1 SSRL 0.91837,0.97916 SYNCHROTRON SSRL BEAMLINE BL11-1 16098.150 uncharacterized protein 2 man polymer 62.068 1,2-ETHANEDIOL 5 syn non-polymer 96.063 SULFATE ION 2 syn non-polymer 18.015 water 118 nat water no yes GKN(MSE)DTSAEPADVQANVSDSSRIEQEAIG(MSE)IEDFYEAYAASF(MSE)STGKEALALGDSIKQKFLTKELIEK VDRLIEATDADPIIRAQDLGEND(MSE)KTLSVKHLNDNWYEVNYTSAKGSQYERAVSIPVRVVNVDGQYLIDDITPEN GKNMDTSAEPADVQANVSDSSRIEQEAIGMIEDFYEAYAASFMSTGKEALALGDSIKQKFLTKELIEKVDRLIEATDADP IIRAQDLGENDMKTLSVKHLNDNWYEVNYTSAKGSQYERAVSIPVRVVNVDGQYLIDDITPEN A,B 392985 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n VPI-5482 sample BT_3511 226186 Bacteroides thetaiotaomicron 562 Escherichia Coli HK100 Plasmid SpeedET 1 2.05 39.97 VAPOR DIFFUSION, SITTING DROP 5.8 3.0000M ammonium sulfate, 0.1M MES pH 5.8, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative software software struct_conn database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Advisory Version format compliance Refinement description Data collection Derived calculations Refinement description Database references Derived calculations 1 0 2010-02-02 1 1 2011-07-13 1 2 2017-11-01 1 3 2019-07-17 1 4 2023-02-01 _software.classification _software.name _software.classification _software.contact_author _software.contact_author_email _software.language _software.location _software.name _software.type _software.version _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2009-12-08 REL REL EDO 1,2-ETHANEDIOL SO4 SULFATE ION HOH water SEQUENCE THIS CONSTRUCT (RESIDUES 26-167) WAS EXPRESSED WITH THE PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. EDO 201 2 EDO EDO 201 A EDO 202 2 EDO EDO 202 A SO4 203 3 SO4 SO4 203 A SO4 204 3 SO4 SO4 204 A EDO 201 2 EDO EDO 201 B EDO 202 2 EDO EDO 202 B EDO 203 2 EDO EDO 203 B HOH 205 4 HOH HOH 205 A HOH 206 4 HOH HOH 206 A HOH 207 4 HOH HOH 207 A HOH 208 4 HOH HOH 208 A HOH 209 4 HOH HOH 209 A HOH 210 4 HOH HOH 210 A HOH 211 4 HOH HOH 211 A HOH 212 4 HOH HOH 212 A HOH 213 4 HOH HOH 213 A HOH 214 4 HOH HOH 214 A HOH 215 4 HOH HOH 215 A HOH 216 4 HOH HOH 216 A HOH 217 4 HOH HOH 217 A HOH 218 4 HOH HOH 218 A HOH 219 4 HOH HOH 219 A HOH 220 4 HOH HOH 220 A HOH 221 4 HOH HOH 221 A HOH 222 4 HOH HOH 222 A HOH 223 4 HOH HOH 223 A HOH 224 4 HOH HOH 224 A HOH 225 4 HOH HOH 225 A HOH 226 4 HOH HOH 226 A HOH 227 4 HOH HOH 227 A HOH 228 4 HOH HOH 228 A HOH 229 4 HOH HOH 229 A HOH 230 4 HOH HOH 230 A HOH 231 4 HOH HOH 231 A HOH 232 4 HOH HOH 232 A HOH 233 4 HOH HOH 233 A HOH 234 4 HOH HOH 234 A HOH 235 4 HOH HOH 235 A HOH 236 4 HOH HOH 236 A HOH 237 4 HOH HOH 237 A HOH 238 4 HOH HOH 238 A HOH 239 4 HOH HOH 239 A HOH 240 4 HOH HOH 240 A HOH 241 4 HOH HOH 241 A HOH 242 4 HOH HOH 242 A HOH 243 4 HOH HOH 243 A HOH 244 4 HOH HOH 244 A HOH 245 4 HOH HOH 245 A HOH 246 4 HOH HOH 246 A HOH 247 4 HOH HOH 247 A HOH 248 4 HOH HOH 248 A HOH 249 4 HOH HOH 249 A HOH 250 4 HOH HOH 250 A HOH 251 4 HOH HOH 251 A HOH 252 4 HOH HOH 252 A HOH 253 4 HOH HOH 253 A HOH 254 4 HOH HOH 254 A HOH 255 4 HOH HOH 255 A HOH 256 4 HOH HOH 256 A HOH 257 4 HOH HOH 257 A HOH 204 4 HOH HOH 204 B HOH 205 4 HOH HOH 205 B HOH 206 4 HOH HOH 206 B HOH 207 4 HOH HOH 207 B HOH 208 4 HOH HOH 208 B HOH 209 4 HOH HOH 209 B HOH 210 4 HOH HOH 210 B HOH 211 4 HOH HOH 211 B HOH 212 4 HOH HOH 212 B HOH 213 4 HOH HOH 213 B HOH 214 4 HOH HOH 214 B HOH 215 4 HOH HOH 215 B HOH 216 4 HOH HOH 216 B HOH 217 4 HOH HOH 217 B HOH 218 4 HOH HOH 218 B HOH 219 4 HOH HOH 219 B HOH 220 4 HOH HOH 220 B HOH 221 4 HOH HOH 221 B HOH 222 4 HOH HOH 222 B HOH 223 4 HOH HOH 223 B HOH 224 4 HOH HOH 224 B HOH 225 4 HOH HOH 225 B HOH 226 4 HOH HOH 226 B HOH 227 4 HOH HOH 227 B HOH 228 4 HOH HOH 228 B HOH 229 4 HOH HOH 229 B HOH 230 4 HOH HOH 230 B HOH 231 4 HOH HOH 231 B HOH 232 4 HOH HOH 232 B HOH 233 4 HOH HOH 233 B HOH 234 4 HOH HOH 234 B HOH 235 4 HOH HOH 235 B HOH 236 4 HOH HOH 236 B HOH 237 4 HOH HOH 237 B HOH 238 4 HOH HOH 238 B HOH 239 4 HOH HOH 239 B HOH 240 4 HOH HOH 240 B HOH 241 4 HOH HOH 241 B HOH 242 4 HOH HOH 242 B HOH 243 4 HOH HOH 243 B HOH 244 4 HOH HOH 244 B HOH 245 4 HOH HOH 245 B HOH 246 4 HOH HOH 246 B HOH 247 4 HOH HOH 247 B HOH 248 4 HOH HOH 248 B HOH 249 4 HOH HOH 249 B HOH 250 4 HOH HOH 250 B HOH 251 4 HOH HOH 251 B HOH 252 4 HOH HOH 252 B HOH 253 4 HOH HOH 253 B HOH 254 4 HOH HOH 254 B HOH 255 4 HOH HOH 255 B HOH 256 4 HOH HOH 256 B HOH 257 4 HOH HOH 257 B HOH 258 4 HOH HOH 258 B HOH 259 4 HOH HOH 259 B HOH 260 4 HOH HOH 260 B HOH 261 4 HOH HOH 261 B HOH 262 4 HOH HOH 262 B HOH 263 4 HOH HOH 263 B HOH 264 4 HOH HOH 264 B HOH 265 4 HOH HOH 265 B HOH 266 4 HOH HOH 266 B HOH 267 4 HOH HOH 267 B HOH 268 4 HOH HOH 268 B n 1 0 A n 2 26 A n 3 27 A n 4 28 A n 5 29 A n 6 30 A n 7 31 A n 8 32 A n 9 33 A n 10 34 A ALA 35 n 11 ALA 35 A ASP 36 n 12 ASP 36 A VAL 37 n 13 VAL 37 A GLN 38 n 14 GLN 38 A ALA 39 n 15 ALA 39 A ASN 40 n 16 ASN 40 A VAL 41 n 17 VAL 41 A SER 42 n 18 SER 42 A ASP 43 n 19 ASP 43 A SER 44 n 20 SER 44 A SER 45 n 21 SER 45 A ARG 46 n 22 ARG 46 A ILE 47 n 23 ILE 47 A GLU 48 n 24 GLU 48 A GLN 49 n 25 GLN 49 A GLU 50 n 26 GLU 50 A ALA 51 n 27 ALA 51 A ILE 52 n 28 ILE 52 A GLY 53 n 29 GLY 53 A MSE 54 n 30 MSE 54 A ILE 55 n 31 ILE 55 A GLU 56 n 32 GLU 56 A ASP 57 n 33 ASP 57 A PHE 58 n 34 PHE 58 A TYR 59 n 35 TYR 59 A GLU 60 n 36 GLU 60 A ALA 61 n 37 ALA 61 A TYR 62 n 38 TYR 62 A ALA 63 n 39 ALA 63 A ALA 64 n 40 ALA 64 A SER 65 n 41 SER 65 A PHE 66 n 42 PHE 66 A MSE 67 n 43 MSE 67 A SER 68 n 44 SER 68 A THR 69 n 45 THR 69 A GLY 70 n 46 GLY 70 A LYS 71 n 47 LYS 71 A GLU 72 n 48 GLU 72 A ALA 73 n 49 ALA 73 A LEU 74 n 50 LEU 74 A ALA 75 n 51 ALA 75 A LEU 76 n 52 LEU 76 A GLY 77 n 53 GLY 77 A ASP 78 n 54 ASP 78 A SER 79 n 55 SER 79 A ILE 80 n 56 ILE 80 A LYS 81 n 57 LYS 81 A GLN 82 n 58 GLN 82 A LYS 83 n 59 LYS 83 A PHE 84 n 60 PHE 84 A LEU 85 n 61 LEU 85 A THR 86 n 62 THR 86 A LYS 87 n 63 LYS 87 A GLU 88 n 64 GLU 88 A LEU 89 n 65 LEU 89 A ILE 90 n 66 ILE 90 A GLU 91 n 67 GLU 91 A LYS 92 n 68 LYS 92 A VAL 93 n 69 VAL 93 A ASP 94 n 70 ASP 94 A ARG 95 n 71 ARG 95 A LEU 96 n 72 LEU 96 A ILE 97 n 73 ILE 97 A GLU 98 n 74 GLU 98 A ALA 99 n 75 ALA 99 A THR 100 n 76 THR 100 A ASP 101 n 77 ASP 101 A ALA 102 n 78 ALA 102 A ASP 103 n 79 ASP 103 A PRO 104 n 80 PRO 104 A ILE 105 n 81 ILE 105 A ILE 106 n 82 ILE 106 A ARG 107 n 83 ARG 107 A ALA 108 n 84 ALA 108 A GLN 109 n 85 GLN 109 A ASP 110 n 86 ASP 110 A LEU 111 n 87 LEU 111 A GLY 112 n 88 GLY 112 A GLU 113 n 89 GLU 113 A ASN 114 n 90 ASN 114 A ASP 115 n 91 ASP 115 A MSE 116 n 92 MSE 116 A LYS 117 n 93 LYS 117 A THR 118 n 94 THR 118 A LEU 119 n 95 LEU 119 A SER 120 n 96 SER 120 A VAL 121 n 97 VAL 121 A LYS 122 n 98 LYS 122 A HIS 123 n 99 HIS 123 A LEU 124 n 100 LEU 124 A ASN 125 n 101 ASN 125 A ASP 126 n 102 ASP 126 A ASN 127 n 103 ASN 127 A TRP 128 n 104 TRP 128 A TYR 129 n 105 TYR 129 A GLU 130 n 106 GLU 130 A VAL 131 n 107 VAL 131 A ASN 132 n 108 ASN 132 A TYR 133 n 109 TYR 133 A THR 134 n 110 THR 134 A SER 135 n 111 SER 135 A ALA 136 n 112 ALA 136 A LYS 137 n 113 LYS 137 A GLY 138 n 114 GLY 138 A SER 139 n 115 SER 139 A GLN 140 n 116 GLN 140 A TYR 141 n 117 TYR 141 A GLU 142 n 118 GLU 142 A ARG 143 n 119 ARG 143 A ALA 144 n 120 ALA 144 A VAL 145 n 121 VAL 145 A SER 146 n 122 SER 146 A ILE 147 n 123 ILE 147 A PRO 148 n 124 PRO 148 A VAL 149 n 125 VAL 149 A ARG 150 n 126 ARG 150 A VAL 151 n 127 VAL 151 A VAL 152 n 128 VAL 152 A ASN 153 n 129 ASN 153 A VAL 154 n 130 VAL 154 A ASP 155 n 131 ASP 155 A GLY 156 n 132 GLY 156 A GLN 157 n 133 GLN 157 A TYR 158 n 134 TYR 158 A LEU 159 n 135 LEU 159 A ILE 160 n 136 ILE 160 A ASP 161 n 137 ASP 161 A ASP 162 n 138 ASP 162 A ILE 163 n 139 ILE 163 A THR 164 n 140 THR 164 A PRO 165 n 141 PRO 165 A GLU 166 n 142 GLU 166 A n 143 167 A n 1 0 B n 2 26 B n 3 27 B n 4 28 B n 5 29 B n 6 30 B n 7 31 B n 8 32 B n 9 33 B n 10 34 B n 11 35 B ASP 36 n 12 ASP 36 B VAL 37 n 13 VAL 37 B GLN 38 n 14 GLN 38 B ALA 39 n 15 ALA 39 B ASN 40 n 16 ASN 40 B VAL 41 n 17 VAL 41 B SER 42 n 18 SER 42 B ASP 43 n 19 ASP 43 B SER 44 n 20 SER 44 B SER 45 n 21 SER 45 B ARG 46 n 22 ARG 46 B ILE 47 n 23 ILE 47 B GLU 48 n 24 GLU 48 B GLN 49 n 25 GLN 49 B GLU 50 n 26 GLU 50 B ALA 51 n 27 ALA 51 B ILE 52 n 28 ILE 52 B GLY 53 n 29 GLY 53 B MSE 54 n 30 MSE 54 B ILE 55 n 31 ILE 55 B GLU 56 n 32 GLU 56 B ASP 57 n 33 ASP 57 B PHE 58 n 34 PHE 58 B TYR 59 n 35 TYR 59 B GLU 60 n 36 GLU 60 B ALA 61 n 37 ALA 61 B TYR 62 n 38 TYR 62 B ALA 63 n 39 ALA 63 B ALA 64 n 40 ALA 64 B SER 65 n 41 SER 65 B PHE 66 n 42 PHE 66 B MSE 67 n 43 MSE 67 B SER 68 n 44 SER 68 B THR 69 n 45 THR 69 B GLY 70 n 46 GLY 70 B LYS 71 n 47 LYS 71 B GLU 72 n 48 GLU 72 B ALA 73 n 49 ALA 73 B LEU 74 n 50 LEU 74 B ALA 75 n 51 ALA 75 B LEU 76 n 52 LEU 76 B GLY 77 n 53 GLY 77 B ASP 78 n 54 ASP 78 B SER 79 n 55 SER 79 B ILE 80 n 56 ILE 80 B LYS 81 n 57 LYS 81 B GLN 82 n 58 GLN 82 B LYS 83 n 59 LYS 83 B PHE 84 n 60 PHE 84 B LEU 85 n 61 LEU 85 B THR 86 n 62 THR 86 B LYS 87 n 63 LYS 87 B GLU 88 n 64 GLU 88 B LEU 89 n 65 LEU 89 B ILE 90 n 66 ILE 90 B GLU 91 n 67 GLU 91 B LYS 92 n 68 LYS 92 B VAL 93 n 69 VAL 93 B ASP 94 n 70 ASP 94 B ARG 95 n 71 ARG 95 B LEU 96 n 72 LEU 96 B ILE 97 n 73 ILE 97 B GLU 98 n 74 GLU 98 B ALA 99 n 75 ALA 99 B THR 100 n 76 THR 100 B ASP 101 n 77 ASP 101 B ALA 102 n 78 ALA 102 B ASP 103 n 79 ASP 103 B PRO 104 n 80 PRO 104 B ILE 105 n 81 ILE 105 B ILE 106 n 82 ILE 106 B ARG 107 n 83 ARG 107 B ALA 108 n 84 ALA 108 B GLN 109 n 85 GLN 109 B ASP 110 n 86 ASP 110 B LEU 111 n 87 LEU 111 B GLY 112 n 88 GLY 112 B GLU 113 n 89 GLU 113 B ASN 114 n 90 ASN 114 B ASP 115 n 91 ASP 115 B MSE 116 n 92 MSE 116 B LYS 117 n 93 LYS 117 B THR 118 n 94 THR 118 B LEU 119 n 95 LEU 119 B SER 120 n 96 SER 120 B VAL 121 n 97 VAL 121 B LYS 122 n 98 LYS 122 B HIS 123 n 99 HIS 123 B LEU 124 n 100 LEU 124 B ASN 125 n 101 ASN 125 B ASP 126 n 102 ASP 126 B ASN 127 n 103 ASN 127 B TRP 128 n 104 TRP 128 B TYR 129 n 105 TYR 129 B GLU 130 n 106 GLU 130 B VAL 131 n 107 VAL 131 B ASN 132 n 108 ASN 132 B TYR 133 n 109 TYR 133 B THR 134 n 110 THR 134 B SER 135 n 111 SER 135 B ALA 136 n 112 ALA 136 B LYS 137 n 113 LYS 137 B GLY 138 n 114 GLY 138 B SER 139 n 115 SER 139 B GLN 140 n 116 GLN 140 B TYR 141 n 117 TYR 141 B GLU 142 n 118 GLU 142 B ARG 143 n 119 ARG 143 B ALA 144 n 120 ALA 144 B VAL 145 n 121 VAL 145 B SER 146 n 122 SER 146 B ILE 147 n 123 ILE 147 B PRO 148 n 124 PRO 148 B VAL 149 n 125 VAL 149 B ARG 150 n 126 ARG 150 B VAL 151 n 127 VAL 151 B VAL 152 n 128 VAL 152 B ASN 153 n 129 ASN 153 B VAL 154 n 130 VAL 154 B ASP 155 n 131 ASP 155 B GLY 156 n 132 GLY 156 B GLN 157 n 133 GLN 157 B TYR 158 n 134 TYR 158 B LEU 159 n 135 LEU 159 B ILE 160 n 136 ILE 160 B ASP 161 n 137 ASP 161 B ASP 162 n 138 ASP 162 B ILE 163 n 139 ILE 163 B THR 164 n 140 THR 164 B PRO 165 n 141 PRO 165 B n 142 166 B n 143 167 B 6.1699 0.9820 4.4853 0.9896 0.4254 5.5955 -0.0798 0.1761 0.0690 -0.0228 0.0768 -0.1154 -0.1014 0.2357 0.0030 0.2593 -0.0279 0.0162 0.2108 -0.0229 0.0513 refined 30.8360 15.1990 12.8930 X-RAY DIFFRACTION 11.3219 -1.8755 2.0792 2.7397 -1.1606 1.7702 -0.4919 0.2625 1.4672 -0.2333 0.1395 -0.4355 -0.5440 0.1950 0.3524 0.3756 -0.0887 -0.0678 0.2019 -0.0344 0.2315 refined 36.2890 27.2180 19.8190 X-RAY DIFFRACTION 1.8241 0.2390 4.3431 9.0289 0.2495 10.5043 0.0227 -0.0581 -0.1059 -0.0828 0.1458 -0.2164 -0.0206 0.1100 -0.1686 0.2625 -0.0719 0.0059 0.4784 0.0786 0.0712 refined 36.8260 15.4040 27.6160 X-RAY DIFFRACTION 3.4734 -1.8329 3.9434 2.0385 -3.0746 6.0771 -0.0907 -0.2570 -0.1067 0.0257 0.1634 0.1104 -0.1430 -0.2722 -0.0727 0.2657 0.0177 0.0231 0.2181 -0.0270 0.0341 refined 26.8910 16.3440 21.0550 X-RAY DIFFRACTION 0.5391 0.2986 -0.2251 6.5258 -3.0160 2.5106 -0.0156 0.0082 -0.0708 0.0484 0.2385 0.1026 0.0580 -0.3442 -0.2229 0.3041 -0.0254 0.0009 0.1725 0.0052 0.0710 refined 45.5410 -9.4320 24.0440 X-RAY DIFFRACTION 1.2486 1.2875 -1.2673 4.5375 1.3972 3.6900 0.4319 -0.1805 0.2053 0.2349 -0.1615 -0.0524 -0.4484 0.1671 -0.2704 0.3542 -0.0562 0.1336 0.2634 -0.0461 0.1963 refined 50.9680 10.8040 14.9230 X-RAY DIFFRACTION 1.8162 -0.1845 0.8469 4.2229 -1.9368 3.9242 -0.0498 0.0576 -0.1325 -0.2299 -0.2320 -0.5184 0.2940 0.6699 0.2819 0.3063 0.0316 0.0767 0.3011 0.0310 0.1105 refined 57.9490 2.6220 6.7730 X-RAY DIFFRACTION 1.4565 -1.3293 1.9547 2.1542 -2.8645 5.3480 0.1081 0.0141 -0.0391 -0.1413 0.0012 0.1099 0.3121 0.1187 -0.1094 0.2524 -0.0053 0.0206 0.1959 0.0042 0.0258 refined 46.3930 -4.0030 11.5280 X-RAY DIFFRACTION A 35 A 74 X-RAY DIFFRACTION 1 A 75 A 100 X-RAY DIFFRACTION 2 A 101 A 116 X-RAY DIFFRACTION 3 A 117 A 166 X-RAY DIFFRACTION 4 B 36 B 62 X-RAY DIFFRACTION 5 B 63 B 87 X-RAY DIFFRACTION 6 B 88 B 109 X-RAY DIFFRACTION 7 B 110 B 165 X-RAY DIFFRACTION 8 author_and_software_defined_assembly PISA 2 dimeric 2000 -28 15330 A MSE 54 SELENOMETHIONINE A MSE 30 MET A MSE 67 SELENOMETHIONINE A MSE 43 MET A MSE 116 SELENOMETHIONINE A MSE 92 MET B MSE 54 SELENOMETHIONINE B MSE 30 MET B MSE 67 SELENOMETHIONINE B MSE 43 MET B MSE 116 SELENOMETHIONINE B MSE 92 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N SER 120 A N SER 96 A O ASN 132 A O ASN 108 A N SER 135 A N SER 111 A O ARG 143 A O ARG 119 A N VAL 152 A N VAL 128 A O LEU 159 A O LEU 135 B N LYS 122 B N LYS 98 B O GLU 130 B O GLU 106 B N TYR 129 B N TYR 105 B O VAL 149 B O VAL 125 B N ARG 150 B N ARG 126 B O ASP 162 B O ASP 138 1 A OG SER 68 A OG SER 44 1 Y 1 A OG1 THR 69 A OG1 THR 45 1 Y 1 A CG2 THR 69 A CG2 THR 45 1 Y 1 A CE LYS 71 A CE LYS 47 1 Y 1 A NZ LYS 71 A NZ LYS 47 1 Y 1 A CG LYS 87 A CG LYS 63 1 Y 1 A CD LYS 87 A CD LYS 63 1 Y 1 A CE LYS 87 A CE LYS 63 1 Y 1 A NZ LYS 87 A NZ LYS 63 1 Y 1 A CD GLU 98 A CD GLU 74 1 Y 1 A OE1 GLU 98 A OE1 GLU 74 1 Y 1 A OE2 GLU 98 A OE2 GLU 74 1 Y 1 B CE LYS 117 B CE LYS 93 1 Y 1 B NZ LYS 117 B NZ LYS 93 1 Y 1 A GLY 0 A GLY 1 1 Y 1 A LYS 26 A LYS 2 1 Y 1 A ASN 27 A ASN 3 1 Y 1 A MSE 28 A MSE 4 1 Y 1 A ASP 29 A ASP 5 1 Y 1 A THR 30 A THR 6 1 Y 1 A SER 31 A SER 7 1 Y 1 A ALA 32 A ALA 8 1 Y 1 A GLU 33 A GLU 9 1 Y 1 A PRO 34 A PRO 10 1 Y 1 A ASN 167 A ASN 143 1 Y 1 B GLY 0 B GLY 1 1 Y 1 B LYS 26 B LYS 2 1 Y 1 B ASN 27 B ASN 3 1 Y 1 B MSE 28 B MSE 4 1 Y 1 B ASP 29 B ASP 5 1 Y 1 B THR 30 B THR 6 1 Y 1 B SER 31 B SER 7 1 Y 1 B ALA 32 B ALA 8 1 Y 1 B GLU 33 B GLU 9 1 Y 1 B PRO 34 B PRO 10 1 Y 1 B ALA 35 B ALA 11 1 Y 1 B GLU 166 B GLU 142 1 Y 1 B ASN 167 B ASN 143 1 Y 1 A ASP 36 52.51 76.60 1 A LEU 124 -99.96 -75.51 1 A ASP 126 53.36 -126.17 1 A PRO 165 -34.14 132.75 1 B LEU 124 -102.56 -69.48 1 B ASP 126 52.76 -123.16 1 B THR 164 53.62 70.15 68.00 18.402 2.00 -0.480 0.000 0.000 1.620 0.000 -1.140 0.943 0.907 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. ETHYLENE GLYCOL (EDO) AND SULFATE IONS (SO4) FROM THE CRYSTALLIZATION/CRYOPROTECTANT SOLUTIONS HAVE BEEN MODELED INTO THE SOLVENT STRUCTURE. 5. TLS GROUPS WERE ASSIGNED WITH THE AID OF THE TLSMD SERVER. 0.268 0.222 0.224 2.100 28.560 805 16067 5.000 99.890 1.00 0.22 14.661 0.170 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 MAD 0.299 0.224 0.800 0.800 1.200 MAXIMUM LIKELIHOOD WITH PHASES MASK 2.100 28.560 118 2192 30 0 2044 0.017 0.022 2264 0.004 0.020 1522 1.289 1.969 3089 1.188 3.000 3757 4.127 5.000 306 31.422 25.798 119 12.491 15.000 417 10.635 15.000 14 0.100 0.200 349 0.004 0.020 2573 0.002 0.020 427 0.282 1.500 1379 0.057 1.500 554 0.526 2.000 2251 0.856 3.000 885 1.344 4.500 816 1 A 1 744 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.240 0.500 1 A 1 851 X-RAY DIFFRACTION LOOSE POSITIONAL 0.470 5.000 1 A 1 744 X-RAY DIFFRACTION MEDIUM THERMAL 0.300 2.000 1 A 1 851 X-RAY DIFFRACTION LOOSE THERMAL 0.290 10.000 0.314 0.298 2.154 66 1059 1125 20 100.000 30.795 2.10 28.560 3KZT 16114 0.108 0.108 1 9.200 3.400 99.900 0.629 2.10 2.15 1.2 3906 1131 0.629 1 3.50 100.00 0.520 2.15 2.21 1.5 4001 1157 0.520 1 3.50 100.00 0.493 2.21 2.28 1.6 3850 1113 0.493 1 3.50 100.00 0.410 2.28 2.35 1.8 3705 1076 0.410 1 3.40 100.00 0.378 2.35 2.42 2.0 3634 1051 0.378 1 3.50 99.90 0.320 2.42 2.51 2.4 3453 998 0.320 1 3.50 100.00 0.270 2.51 2.60 2.8 3418 991 0.270 1 3.40 100.00 0.237 2.60 2.71 3.2 3240 939 0.237 1 3.50 100.00 0.186 2.71 2.83 4.1 3093 904 0.186 1 3.40 100.00 0.147 2.83 2.97 4.8 3001 877 0.147 1 3.40 100.00 0.129 2.97 3.13 5.5 2844 838 0.129 1 3.40 100.00 0.102 3.13 3.32 6.9 2696 797 0.102 1 3.40 100.00 0.082 3.32 3.55 8.2 2546 752 0.082 1 3.40 99.90 0.070 3.55 3.83 8.6 2319 689 0.070 1 3.40 99.80 0.059 3.83 4.20 10.3 2172 651 0.059 1 3.30 99.90 0.051 4.20 4.70 11.8 1936 582 0.051 1 3.30 99.80 0.055 4.70 5.42 10.7 1706 531 0.055 1 3.20 99.80 0.061 5.42 6.64 9.8 1447 458 0.061 1 3.20 99.70 0.047 6.64 9.39 11.3 1125 363 0.047 1 3.10 99.80 0.037 9.39 28.56 13.0 597 216 0.037 1 2.80 95.60 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.5.0053 refinement P.D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package phasing George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk 5/04/2004 Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other 3.2.5 data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.006 data reduction MOSFLM phasing SHELXD phasing autoSHARP Crystal structure of Protein of unknown function (NP_812423.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 2 N N 2 N N 2 N N 4 N N 4 N N A ASP 36 A ASP 12 HELX_P A PHE 66 A PHE 42 1 1 31 A GLY 70 A GLY 46 HELX_P A LEU 85 A LEU 61 1 2 16 A THR 86 A THR 62 HELX_P A THR 100 A THR 76 1 3 15 A ASP 115 A ASP 91 HELX_P A LEU 119 A LEU 95 5 4 5 B ASP 36 B ASP 12 HELX_P B PHE 66 B PHE 42 1 5 31 B GLY 70 B GLY 46 HELX_P B LEU 85 B LEU 61 1 6 16 B THR 86 B THR 62 HELX_P B THR 100 B THR 76 1 7 15 B ASP 115 B ASP 91 HELX_P B LEU 119 B LEU 95 5 8 5 covale 1.321 both A GLY 53 A C GLY 29 1_555 A MSE 54 A N MSE 30 1_555 covale 1.340 both A MSE 54 A C MSE 30 1_555 A ILE 55 A N ILE 31 1_555 covale 1.355 both A PHE 66 A C PHE 42 1_555 A MSE 67 A N MSE 43 1_555 covale 1.343 both A MSE 67 A C MSE 43 1_555 A SER 68 A N SER 44 1_555 covale 1.336 both A ASP 115 A C ASP 91 1_555 A MSE 116 A N MSE 92 1_555 covale 1.345 both A MSE 116 A C MSE 92 1_555 A LYS 117 A N LYS 93 1_555 covale 1.327 both B GLY 53 B C GLY 29 1_555 B MSE 54 B N MSE 30 1_555 covale 1.331 both B MSE 54 B C MSE 30 1_555 B ILE 55 B N ILE 31 1_555 covale 1.354 both B PHE 66 B C PHE 42 1_555 B MSE 67 B N MSE 43 1_555 covale 1.349 both B MSE 67 B C MSE 43 1_555 B SER 68 B N SER 44 1_555 covale 1.332 both B ASP 115 B C ASP 91 1_555 B MSE 116 B N MSE 92 1_555 covale 1.345 both B MSE 116 B C MSE 92 1_555 B LYS 117 B N LYS 93 1_555 structural genomics, unknown function Protein of unknown function, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function A B A 36 A 165 5 B 36 B 165 5 Q8A1Z7_BACTN UNP 1 26 Q8A1Z7 KNMDTSAEPADVQANVSDSSRIEQEAIGMIEDFYEAYAASFMSTGKEALALGDSIKQKFLTKELIEKVDRLIEATDADPI IRAQDLGENDMKTLSVKHLNDNWYEVNYTSAKGSQYERAVSIPVRVVNVDGQYLIDDITPEN 26 167 3KZT 26 167 Q8A1Z7 A 1 2 143 26 167 3KZT 26 167 Q8A1Z7 B 1 2 143 1 expression tag GLY 0 3KZT A Q8A1Z7 UNP 1 2 expression tag GLY 0 3KZT B Q8A1Z7 UNP 1 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A SER 120 A SER 96 A ASN 125 A ASN 101 A TRP 128 A TRP 104 A SER 135 A SER 111 A ARG 143 A ARG 119 A VAL 154 A VAL 130 A GLN 157 A GLN 133 A ILE 163 A ILE 139 B SER 120 B SER 96 B ASN 125 B ASN 101 B TRP 128 B TRP 104 B SER 135 B SER 111 B ARG 143 B ARG 119 B VAL 154 B VAL 130 B GLN 157 B GLN 133 B ILE 163 B ILE 139 BINDING SITE FOR RESIDUE EDO A 201 A EDO 201 Software 5 BINDING SITE FOR RESIDUE EDO A 202 A EDO 202 Software 7 BINDING SITE FOR RESIDUE SO4 A 203 A SO4 203 Software 4 BINDING SITE FOR RESIDUE SO4 A 204 A SO4 204 Software 4 BINDING SITE FOR RESIDUE EDO B 201 B EDO 201 Software 1 BINDING SITE FOR RESIDUE EDO B 202 B EDO 202 Software 3 BINDING SITE FOR RESIDUE EDO B 203 B EDO 203 Software 5 A ASN 127 A ASN 103 5 1_555 A TYR 129 A TYR 105 5 1_555 A VAL 151 A VAL 127 5 1_555 A HOH 240 J HOH 5 1_555 B TYR 141 B TYR 117 5 4_455 A SER 135 A SER 111 7 1_555 A ALA 136 A ALA 112 7 1_555 A TYR 141 A TYR 117 7 1_555 A ARG 143 A ARG 119 7 1_555 B ILE 47 B ILE 23 7 3_755 B ASN 153 B ASN 129 7 3_755 B TYR 158 B TYR 134 7 3_755 A TRP 128 A TRP 104 4 1_555 A ARG 150 A ARG 126 4 1_555 A HOH 250 J HOH 4 1_555 B EDO 202 H EDO 4 1_465 A ARG 107 A ARG 83 4 1_555 A SER 146 A SER 122 4 1_555 A PRO 148 A PRO 124 4 1_555 A THR 164 A THR 140 4 1_555 B ARG 107 B ARG 83 1 1_555 A SO4 203 E SO4 3 1_645 B TRP 128 B TRP 104 3 1_555 B ARG 150 B ARG 126 3 1_555 A ILE 47 A ILE 23 5 4_555 A ASN 153 A ASN 129 5 4_555 B SER 135 B SER 111 5 1_555 B TYR 141 B TYR 117 5 1_555 B ARG 143 B ARG 119 5 1_555 19 P 21 21 21