0.015894 0.000000 0.000000 0.000000 0.015894 0.000000 0.000000 0.000000 0.005436 0.00000 0.00000 0.00000 Kamtekar, S. Day, J.E. Reitz, B.A. Mathis, K.J. Meyers, M.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 62.916 62.916 183.943 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C23 H24 N6 O4 448.474 3-({4-methoxy-5-[(4-methoxybenzyl)oxy]pyridin-2-yl}methoxy)-5-(1-methyl-1H-pyrazol-4-yl)pyrazin-2-amine non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H Y 180 N C Y 181 N C Y 182 N C Y 183 N C Y 184 N C Y 185 N C N 186 N C Y 187 N C Y 188 N C Y 189 N C Y 190 N C Y 191 N C N 192 N C N 193 N C N 194 N C Y 195 N C Y 196 N C Y 197 N C N 198 N C Y 199 N C Y 200 N C Y 201 N C Y 202 N C N 203 N N Y 204 N N Y 205 N N Y 206 N N Y 207 N N Y 208 N N N 209 N O N 210 N O N 211 N O N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C N 242 N C N 243 N C N 244 N C N 245 N O N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N C N 267 N N N 268 N O N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C N 289 N C N 290 N S N 291 N C N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C Y 309 N C Y 310 N C Y 311 N C Y 312 N C Y 313 N C Y 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N N N 345 S C N 346 N C N 347 N O N 348 N C N 349 N O N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 R C N 363 N O N 364 N C N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N N N 376 S C N 377 N C N 378 N O N 379 N C Y 380 N C Y 381 N C Y 382 N C Y 383 N N Y 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N N N 403 S C N 404 N C N 405 N O N 406 N C Y 407 N C Y 408 N C Y 409 N C Y 410 N C Y 411 N C Y 412 N C N 413 N O N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N N N 427 S C N 428 N C N 429 N O N 430 N C N 431 N C N 432 N C N 433 N O N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing Y 171 N doub Y 172 N sing Y 173 N sing Y 174 N doub Y 175 N sing Y 176 N doub Y 177 N doub Y 178 N sing Y 179 N sing Y 180 N doub N 181 N sing N 182 N sing N 183 N sing Y 184 N sing Y 185 N doub N 186 N sing Y 187 N doub Y 188 N sing Y 189 N sing Y 190 N sing N 191 N sing Y 192 N doub N 193 N sing N 194 N sing N 195 N sing Y 196 N sing Y 197 N doub Y 198 N sing Y 199 N doub Y 200 N sing N 201 N sing N 202 N sing N 203 N sing Y 204 N doub N 205 N sing Y 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N doub N 302 N sing N 303 N sing N 304 N sing N 305 N sing Y 306 N doub Y 307 N sing Y 308 N sing N 309 N sing Y 310 N doub N 311 N sing Y 312 N doub N 313 N sing Y 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N doub N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing Y 375 N doub Y 376 N sing Y 377 N sing N 378 N sing Y 379 N doub Y 380 N sing Y 381 N sing N 382 N sing Y 383 N sing Y 384 N doub N 385 N sing Y 386 N doub N 387 N sing Y 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing Y 403 N doub Y 404 N sing Y 405 N sing N 406 N sing Y 407 N doub N 408 N sing Y 409 N doub N 410 N sing Y 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N doub N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing UK Bioorg.Med.Chem.Lett. BMCLE8 1127 0960-894X 20 1543 1547 10.1016/j.bmcl.2010.01.078 20137931 Structure-based drug design enables conversion of a DFG-in binding CSF-1R kinase inhibitor to a DFG-out binding mode. 2010 10.2210/pdb3lco/pdb pdb_00003lco 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2009-04-09 MARMOSAIC 300 mm CCD Diamond [111] SINGLE WAVELENGTH M x-ray 1 1.07816 1.0 21-ID-D APS 1.07816 SYNCHROTRON APS BEAMLINE 21-ID-D 36280.562 Macrophage colony-stimulating factor 1 receptor 2.7.10.1 Kinase Domain 1 man polymer 448.474 3-({4-methoxy-5-[(4-methoxybenzyl)oxy]pyridin-2-yl}methoxy)-5-(1-methyl-1H-pyrazol-4-yl)pyrazin-2-amine 1 syn non-polymer CSF-1-R, Proto-oncogene c-Fms no no WKIIESYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEA LMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEAMLGPSLAPGQDPEGLDKEDGRPLELRDL LHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQ SDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQ EDRR WKIIESYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEA LMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEAMLGPSLAPGQDPEGLDKEDGRPLELRDL LHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQ SDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQ EDRR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human fall armyworm sample 1 146 CSF-1R, CSF1R, FMS 9606 Homo sapiens 7108 Spodoptera frugiperda Baculovirus human fall armyworm sample 147 324 CSF-1R, CSF1R, FMS 9606 Homo sapiens 7108 Spodoptera frugiperda Baculovirus 1 2.51 50.97 VAPOR DIFFUSION, HANGING DROP 8.5 11 mg/mL protein incubated with 4 mM inhibitor at 4C overnight followed by addition of 1 ug Arg-C (per 50 ul sample) at 22C for 24 hours, followed by addition of 0.5 uL of 5 mg/mL leupeptin, followed by mixing with equal volumes of well solution:22.5-35% PEG 4000, 0.1M Tris-HCL pH 8.5, 0.2M MgCl2, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 entity_src_gen software chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Version format compliance Refinement description Source and taxonomy Data collection Database references Derived calculations 1 0 2010-09-15 1 1 2011-07-13 1 2 2017-08-16 1 3 2024-02-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id A different inhibitor complex RCSB Y RCSB 2010-01-11 REL REL LC0 3-({4-methoxy-5-[(4-methoxybenzyl)oxy]pyridin-2-yl}methoxy)-5-(1-methyl-1H-pyrazol-4-yl)pyrazin-2-amine LIG 999 2 LC0 LC0 999 A n 1 550 A LYS 551 n 2 LYS 551 A ILE 552 n 3 ILE 552 A ILE 553 n 4 ILE 553 A GLU 554 n 5 GLU 554 A n 6 555 A n 7 556 A n 8 557 A n 9 558 A n 10 559 A n 11 560 A n 12 561 A n 13 562 A PHE 563 n 14 PHE 563 A ILE 564 n 15 ILE 564 A ASP 565 n 16 ASP 565 A PRO 566 n 17 PRO 566 A THR 567 n 18 THR 567 A GLN 568 n 19 GLN 568 A LEU 569 n 20 LEU 569 A PRO 570 n 21 PRO 570 A TYR 571 n 22 TYR 571 A ASN 572 n 23 ASN 572 A GLU 573 n 24 GLU 573 A LYS 574 n 25 LYS 574 A TRP 575 n 26 TRP 575 A GLU 576 n 27 GLU 576 A PHE 577 n 28 PHE 577 A PRO 578 n 29 PRO 578 A ARG 579 n 30 ARG 579 A ASN 580 n 31 ASN 580 A ASN 581 n 32 ASN 581 A LEU 582 n 33 LEU 582 A GLN 583 n 34 GLN 583 A PHE 584 n 35 PHE 584 A GLY 585 n 36 GLY 585 A LYS 586 n 37 LYS 586 A THR 587 n 38 THR 587 A LEU 588 n 39 LEU 588 A GLY 589 n 40 GLY 589 A ALA 590 n 41 ALA 590 A GLY 591 n 42 GLY 591 A ALA 592 n 43 ALA 592 A PHE 593 n 44 PHE 593 A GLY 594 n 45 GLY 594 A LYS 595 n 46 LYS 595 A VAL 596 n 47 VAL 596 A VAL 597 n 48 VAL 597 A GLU 598 n 49 GLU 598 A ALA 599 n 50 ALA 599 A THR 600 n 51 THR 600 A ALA 601 n 52 ALA 601 A PHE 602 n 53 PHE 602 A GLY 603 n 54 GLY 603 A LEU 604 n 55 LEU 604 A GLY 605 n 56 GLY 605 A LYS 606 n 57 LYS 606 A GLU 607 n 58 GLU 607 A ASP 608 n 59 ASP 608 A ALA 609 n 60 ALA 609 A VAL 610 n 61 VAL 610 A LEU 611 n 62 LEU 611 A LYS 612 n 63 LYS 612 A VAL 613 n 64 VAL 613 A ALA 614 n 65 ALA 614 A VAL 615 n 66 VAL 615 A LYS 616 n 67 LYS 616 A MET 617 n 68 MET 617 A LEU 618 n 69 LEU 618 A LYS 619 n 70 LYS 619 A SER 620 n 71 SER 620 A THR 621 n 72 THR 621 A ALA 622 n 73 ALA 622 A HIS 623 n 74 HIS 623 A ALA 624 n 75 ALA 624 A ASP 625 n 76 ASP 625 A GLU 626 n 77 GLU 626 A LYS 627 n 78 LYS 627 A GLU 628 n 79 GLU 628 A ALA 629 n 80 ALA 629 A LEU 630 n 81 LEU 630 A MET 631 n 82 MET 631 A SER 632 n 83 SER 632 A GLU 633 n 84 GLU 633 A LEU 634 n 85 LEU 634 A LYS 635 n 86 LYS 635 A ILE 636 n 87 ILE 636 A MET 637 n 88 MET 637 A SER 638 n 89 SER 638 A HIS 639 n 90 HIS 639 A LEU 640 n 91 LEU 640 A GLY 641 n 92 GLY 641 A GLN 642 n 93 GLN 642 A HIS 643 n 94 HIS 643 A GLU 644 n 95 GLU 644 A ASN 645 n 96 ASN 645 A ILE 646 n 97 ILE 646 A VAL 647 n 98 VAL 647 A ASN 648 n 99 ASN 648 A LEU 649 n 100 LEU 649 A LEU 650 n 101 LEU 650 A GLY 651 n 102 GLY 651 A ALA 652 n 103 ALA 652 A CYS 653 n 104 CYS 653 A THR 654 n 105 THR 654 A HIS 655 n 106 HIS 655 A GLY 656 n 107 GLY 656 A GLY 657 n 108 GLY 657 A PRO 658 n 109 PRO 658 A VAL 659 n 110 VAL 659 A LEU 660 n 111 LEU 660 A VAL 661 n 112 VAL 661 A ILE 662 n 113 ILE 662 A THR 663 n 114 THR 663 A GLU 664 n 115 GLU 664 A TYR 665 n 116 TYR 665 A CYS 666 n 117 CYS 666 A CYS 667 n 118 CYS 667 A TYR 668 n 119 TYR 668 A GLY 669 n 120 GLY 669 A ASP 670 n 121 ASP 670 A LEU 671 n 122 LEU 671 A LEU 672 n 123 LEU 672 A ASN 673 n 124 ASN 673 A PHE 674 n 125 PHE 674 A LEU 675 n 126 LEU 675 A ARG 676 n 127 ARG 676 A ARG 677 n 128 ARG 677 A LYS 678 n 129 LYS 678 A ALA 679 n 130 ALA 679 A GLU 680 n 131 GLU 680 A ALA 681 n 132 ALA 681 A MET 682 n 133 MET 682 A LEU 683 n 134 LEU 683 A GLY 684 n 135 GLY 684 A PRO 685 n 136 PRO 685 A SER 686 n 137 SER 686 A n 138 733 A n 139 734 A n 140 735 A n 141 736 A n 142 737 A n 143 738 A n 144 739 A n 145 740 A n 146 741 A n 147 742 A n 148 743 A n 149 744 A n 150 745 A n 151 746 A GLY 747 n 152 GLY 747 A ARG 748 n 153 ARG 748 A PRO 749 n 154 PRO 749 A LEU 750 n 155 LEU 750 A GLU 751 n 156 GLU 751 A LEU 752 n 157 LEU 752 A ARG 753 n 158 ARG 753 A ASP 754 n 159 ASP 754 A LEU 755 n 160 LEU 755 A LEU 756 n 161 LEU 756 A HIS 757 n 162 HIS 757 A PHE 758 n 163 PHE 758 A SER 759 n 164 SER 759 A SER 760 n 165 SER 760 A GLN 761 n 166 GLN 761 A VAL 762 n 167 VAL 762 A ALA 763 n 168 ALA 763 A GLN 764 n 169 GLN 764 A GLY 765 n 170 GLY 765 A MET 766 n 171 MET 766 A ALA 767 n 172 ALA 767 A PHE 768 n 173 PHE 768 A LEU 769 n 174 LEU 769 A ALA 770 n 175 ALA 770 A SER 771 n 176 SER 771 A LYS 772 n 177 LYS 772 A ASN 773 n 178 ASN 773 A CYS 774 n 179 CYS 774 A ILE 775 n 180 ILE 775 A HIS 776 n 181 HIS 776 A ARG 777 n 182 ARG 777 A ASP 778 n 183 ASP 778 A VAL 779 n 184 VAL 779 A ALA 780 n 185 ALA 780 A ALA 781 n 186 ALA 781 A ARG 782 n 187 ARG 782 A ASN 783 n 188 ASN 783 A VAL 784 n 189 VAL 784 A LEU 785 n 190 LEU 785 A LEU 786 n 191 LEU 786 A THR 787 n 192 THR 787 A ASN 788 n 193 ASN 788 A GLY 789 n 194 GLY 789 A HIS 790 n 195 HIS 790 A VAL 791 n 196 VAL 791 A ALA 792 n 197 ALA 792 A LYS 793 n 198 LYS 793 A ILE 794 n 199 ILE 794 A GLY 795 n 200 GLY 795 A ASP 796 n 201 ASP 796 A PHE 797 n 202 PHE 797 A GLY 798 n 203 GLY 798 A LEU 799 n 204 LEU 799 A ALA 800 n 205 ALA 800 A ARG 801 n 206 ARG 801 A ASP 802 n 207 ASP 802 A ILE 803 n 208 ILE 803 A MET 804 n 209 MET 804 A ASN 805 n 210 ASN 805 A ASP 806 n 211 ASP 806 A SER 807 n 212 SER 807 A ASN 808 n 213 ASN 808 A TYR 809 n 214 TYR 809 A ILE 810 n 215 ILE 810 A VAL 811 n 216 VAL 811 A n 217 812 A n 218 813 A n 219 814 A n 220 815 A ARG 816 n 221 ARG 816 A LEU 817 n 222 LEU 817 A PRO 818 n 223 PRO 818 A VAL 819 n 224 VAL 819 A LYS 820 n 225 LYS 820 A TRP 821 n 226 TRP 821 A MET 822 n 227 MET 822 A ALA 823 n 228 ALA 823 A PRO 824 n 229 PRO 824 A GLU 825 n 230 GLU 825 A SER 826 n 231 SER 826 A ILE 827 n 232 ILE 827 A PHE 828 n 233 PHE 828 A ASP 829 n 234 ASP 829 A CYS 830 n 235 CYS 830 A VAL 831 n 236 VAL 831 A TYR 832 n 237 TYR 832 A THR 833 n 238 THR 833 A VAL 834 n 239 VAL 834 A GLN 835 n 240 GLN 835 A SER 836 n 241 SER 836 A ASP 837 n 242 ASP 837 A VAL 838 n 243 VAL 838 A TRP 839 n 244 TRP 839 A SER 840 n 245 SER 840 A TYR 841 n 246 TYR 841 A GLY 842 n 247 GLY 842 A ILE 843 n 248 ILE 843 A LEU 844 n 249 LEU 844 A LEU 845 n 250 LEU 845 A TRP 846 n 251 TRP 846 A GLU 847 n 252 GLU 847 A ILE 848 n 253 ILE 848 A PHE 849 n 254 PHE 849 A SER 850 n 255 SER 850 A LEU 851 n 256 LEU 851 A GLY 852 n 257 GLY 852 A LEU 853 n 258 LEU 853 A ASN 854 n 259 ASN 854 A PRO 855 n 260 PRO 855 A TYR 856 n 261 TYR 856 A PRO 857 n 262 PRO 857 A GLY 858 n 263 GLY 858 A ILE 859 n 264 ILE 859 A LEU 860 n 265 LEU 860 A VAL 861 n 266 VAL 861 A ASN 862 n 267 ASN 862 A SER 863 n 268 SER 863 A LYS 864 n 269 LYS 864 A PHE 865 n 270 PHE 865 A TYR 866 n 271 TYR 866 A LYS 867 n 272 LYS 867 A LEU 868 n 273 LEU 868 A VAL 869 n 274 VAL 869 A LYS 870 n 275 LYS 870 A ASP 871 n 276 ASP 871 A GLY 872 n 277 GLY 872 A TYR 873 n 278 TYR 873 A GLN 874 n 279 GLN 874 A MET 875 n 280 MET 875 A ALA 876 n 281 ALA 876 A GLN 877 n 282 GLN 877 A PRO 878 n 283 PRO 878 A ALA 879 n 284 ALA 879 A PHE 880 n 285 PHE 880 A ALA 881 n 286 ALA 881 A PRO 882 n 287 PRO 882 A LYS 883 n 288 LYS 883 A ASN 884 n 289 ASN 884 A ILE 885 n 290 ILE 885 A TYR 886 n 291 TYR 886 A SER 887 n 292 SER 887 A ILE 888 n 293 ILE 888 A MET 889 n 294 MET 889 A GLN 890 n 295 GLN 890 A ALA 891 n 296 ALA 891 A CYS 892 n 297 CYS 892 A TRP 893 n 298 TRP 893 A ALA 894 n 299 ALA 894 A LEU 895 n 300 LEU 895 A GLU 896 n 301 GLU 896 A PRO 897 n 302 PRO 897 A THR 898 n 303 THR 898 A HIS 899 n 304 HIS 899 A ARG 900 n 305 ARG 900 A PRO 901 n 306 PRO 901 A THR 902 n 307 THR 902 A PHE 903 n 308 PHE 903 A GLN 904 n 309 GLN 904 A GLN 905 n 310 GLN 905 A ILE 906 n 311 ILE 906 A CYS 907 n 312 CYS 907 A SER 908 n 313 SER 908 A PHE 909 n 314 PHE 909 A LEU 910 n 315 LEU 910 A GLN 911 n 316 GLN 911 A GLU 912 n 317 GLU 912 A GLN 913 n 318 GLN 913 A ALA 914 n 319 ALA 914 A GLN 915 n 320 GLN 915 A n 321 916 A n 322 917 A n 323 918 A n 324 919 A 4.2510 0.3291 -1.8851 5.2314 2.6552 9.1652 -0.1920 0.0617 -0.4693 0.0983 -0.2229 0.5405 0.5852 -0.7668 0.4148 0.2469 0.0226 0.0646 0.1689 -0.0085 0.1808 refined -11.0820 18.6335 -24.2707 X-RAY DIFFRACTION 5.5562 -0.4238 0.4412 2.5354 0.3367 2.9864 0.0422 0.2593 -0.3259 -0.2828 -0.0905 -0.0775 0.1455 -0.1274 0.0483 0.1361 -0.0253 -0.0045 0.0283 -0.0104 0.0332 refined -2.9947 19.0589 -0.7959 X-RAY DIFFRACTION A 550 A 665 X-RAY DIFFRACTION 1 A 666 A 930 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLY 585 A N GLY 36 A O GLU 598 A O GLU 49 A N ALA 599 A N ALA 50 A O VAL 613 A O VAL 64 A N LYS 616 A N LYS 67 A O VAL 661 A O VAL 112 A O ILE 662 A O ILE 113 A N LEU 650 A N LEU 101 A N GLY 669 A N GLY 120 A O LEU 786 A O LEU 191 A N LEU 785 A N LEU 190 A O LYS 793 A O LYS 198 A N ILE 810 A N ILE 215 A O LEU 817 A O LEU 222 1 A CG GLU 554 A CG GLU 5 1 Y 1 A CD GLU 554 A CD GLU 5 1 Y 1 A OE1 GLU 554 A OE1 GLU 5 1 Y 1 A OE2 GLU 554 A OE2 GLU 5 1 Y 1 A CG GLN 568 A CG GLN 19 1 Y 1 A CD GLN 568 A CD GLN 19 1 Y 1 A OE1 GLN 568 A OE1 GLN 19 1 Y 1 A NE2 GLN 568 A NE2 GLN 19 1 Y 1 A CG LYS 574 A CG LYS 25 1 Y 1 A CD LYS 574 A CD LYS 25 1 Y 1 A CE LYS 574 A CE LYS 25 1 Y 1 A NZ LYS 574 A NZ LYS 25 1 Y 1 A CG LYS 586 A CG LYS 37 1 Y 1 A CD LYS 586 A CD LYS 37 1 Y 1 A CE LYS 586 A CE LYS 37 1 Y 1 A NZ LYS 586 A NZ LYS 37 1 Y 1 A CG LYS 606 A CG LYS 57 1 Y 1 A CD LYS 606 A CD LYS 57 1 Y 1 A CE LYS 606 A CE LYS 57 1 Y 1 A NZ LYS 606 A NZ LYS 57 1 Y 1 A CG ASP 625 A CG ASP 76 1 Y 1 A OD1 ASP 625 A OD1 ASP 76 1 Y 1 A OD2 ASP 625 A OD2 ASP 76 1 Y 1 A CG LYS 627 A CG LYS 78 1 Y 1 A CD LYS 627 A CD LYS 78 1 Y 1 A CE LYS 627 A CE LYS 78 1 Y 1 A NZ LYS 627 A NZ LYS 78 1 Y 1 A CG GLU 644 A CG GLU 95 1 Y 1 A CD GLU 644 A CD GLU 95 1 Y 1 A OE1 GLU 644 A OE1 GLU 95 1 Y 1 A OE2 GLU 644 A OE2 GLU 95 1 Y 1 A CG ASN 673 A CG ASN 124 1 Y 1 A OD1 ASN 673 A OD1 ASN 124 1 Y 1 A ND2 ASN 673 A ND2 ASN 124 1 Y 1 A CG ASP 802 A CG ASP 207 1 Y 1 A OD1 ASP 802 A OD1 ASP 207 1 Y 1 A OD2 ASP 802 A OD2 ASP 207 1 Y 1 A CG1 ILE 803 A CG1 ILE 208 1 Y 1 A CG2 ILE 803 A CG2 ILE 208 1 Y 1 A CD1 ILE 803 A CD1 ILE 208 1 Y 1 A CG LYS 864 A CG LYS 269 1 Y 1 A CD LYS 864 A CD LYS 269 1 Y 1 A CE LYS 864 A CE LYS 269 1 Y 1 A NZ LYS 864 A NZ LYS 269 1 Y 1 A CG LYS 883 A CG LYS 288 1 Y 1 A CD LYS 883 A CD LYS 288 1 Y 1 A CE LYS 883 A CE LYS 288 1 Y 1 A NZ LYS 883 A NZ LYS 288 1 Y 1 A CG GLN 915 A CG GLN 320 1 Y 1 A CD GLN 915 A CD GLN 320 1 Y 1 A OE1 GLN 915 A OE1 GLN 320 1 Y 1 A NE2 GLN 915 A NE2 GLN 320 1 Y 1 A TRP 550 A TRP 1 1 Y 1 A SER 555 A SER 6 1 Y 1 A TYR 556 A TYR 7 1 Y 1 A GLU 557 A GLU 8 1 Y 1 A GLY 558 A GLY 9 1 Y 1 A ASN 559 A ASN 10 1 Y 1 A SER 560 A SER 11 1 Y 1 A TYR 561 A TYR 12 1 Y 1 A THR 562 A THR 13 1 Y 1 A LEU 733 A LEU 138 1 Y 1 A ALA 734 A ALA 139 1 Y 1 A PRO 735 A PRO 140 1 Y 1 A GLY 736 A GLY 141 1 Y 1 A GLN 737 A GLN 142 1 Y 1 A ASP 738 A ASP 143 1 Y 1 A PRO 739 A PRO 144 1 Y 1 A GLU 740 A GLU 145 1 Y 1 A GLY 741 A GLY 146 1 Y 1 A LEU 742 A LEU 147 1 Y 1 A ASP 743 A ASP 148 1 Y 1 A LYS 744 A LYS 149 1 Y 1 A GLU 745 A GLU 150 1 Y 1 A ASP 746 A ASP 151 1 Y 1 A LYS 812 A LYS 217 1 Y 1 A GLY 813 A GLY 218 1 Y 1 A ASN 814 A ASN 219 1 Y 1 A ALA 815 A ALA 220 1 Y 1 A GLU 916 A GLU 321 1 Y 1 A ASP 917 A ASP 322 1 Y 1 A ARG 918 A ARG 323 1 Y 1 A ARG 919 A ARG 324 1 Y 1 A HIS 623 -122.28 -150.54 1 A ASP 778 -164.89 65.78 1 A THR 787 -109.76 -167.74 1 A TRP 893 -92.95 33.40 62.589 1.20 0.00 0.00 1.20 0.00 -2.40 0.896 0.831 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.28882 0.24518 0.247 0.24721 3.40 19.90 250 5300 5035 4.7 95.59 74.386 0.550 RANDOM 1 Isotropic THROUGHOUT 0 -3 MOLECULAR REPLACEMENT 0.683 0.80 0.80 1.40 MAXIMUM LIKELIHOOD MASK 3.40 19.90 0 2285 33 0 2252 0.004 0.022 2345 0.001 0.020 1528 0.713 1.970 3184 0.721 3.000 3729 4.163 5.000 291 33.017 24.021 97 12.463 15.000 368 15.613 15.000 10 0.041 0.200 351 0.002 0.021 2657 0.001 0.020 472 0.038 1.500 1457 0.004 1.500 593 0.072 2.000 2322 0.072 3.000 888 0.128 4.500 861 0.329 0.299 3.487 23 364 20 97.48 68 3.4 20.0 3LCO 5300 5285 -3.0 0.156 1 8.0 3.2 95.2 3.4 3.52 1.9 536 0.579 3.3 98.5 data collection HKL-2000 refinement REFMAC rigid body refinement data reduction HKL-2000 data scaling HKL-2000 phasing REFMAC rigid body refinement Inhibitor Bound to A DFG-Out structure of the Kinase Domain of CSF-1R 1 N N 2 N N A ASN 572 A ASN 23 HELX_P A GLU 576 A GLU 27 5 1 5 A PRO 578 A PRO 29 HELX_P A ASN 580 A ASN 31 5 2 3 A HIS 623 A HIS 74 HELX_P A GLY 641 A GLY 92 1 3 19 A LEU 671 A LEU 122 HELX_P A GLY 684 A GLY 135 1 4 14 A GLU 751 A GLU 156 HELX_P A LYS 772 A LYS 177 1 5 22 A ASP 802 A ASP 207 HELX_P A ASP 806 A ASP 211 5 6 5 A LYS 820 A LYS 225 HELX_P A MET 822 A MET 227 5 7 3 A ALA 823 A ALA 228 HELX_P A PHE 828 A PHE 233 1 8 6 A THR 833 A THR 238 HELX_P A PHE 849 A PHE 254 1 9 17 A ASN 862 A ASN 267 HELX_P A GLY 872 A GLY 277 1 10 11 A PRO 882 A PRO 287 HELX_P A TRP 893 A TRP 298 1 11 12 A GLU 896 A GLU 301 HELX_P A ARG 900 A ARG 305 5 12 5 A THR 902 A THR 307 HELX_P A GLN 915 A GLN 320 1 13 14 TRANSFERASE ATP-binding, Disulfide bond, Glycoprotein, Immunoglobulin domain, Kinase, Membrane, Nucleotide-binding, Phosphoprotein, Proto-oncogene, Receptor, Transferase, Transmembrane, Tyrosine-protein kinase CSF1R_HUMAN UNP 1 550 P07333 WKIIESYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEA LMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEAMLGPSLSPGQDPEG CSF1R_HUMAN UNP 1 742 P07333 LDKEDGRPLELRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKW MAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRP TFQQICSFLQEQAQEDRR 550 695 3LCO 550 741 P07333 A 1 1 146 742 919 3LCO 742 919 P07333 A 2 147 324 1 SER conflict ALA 734 3LCO A P07333 UNP 688 139 5 3 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 582 A LEU 33 A ALA 590 A ALA 41 A GLY 594 A GLY 45 A LEU 604 A LEU 55 A ALA 609 A ALA 60 A LEU 618 A LEU 69 A LEU 660 A LEU 111 A THR 663 A THR 114 A LEU 649 A LEU 100 A CYS 653 A CYS 104 A GLY 669 A GLY 120 A ASP 670 A ASP 121 A VAL 784 A VAL 189 A THR 787 A THR 192 A VAL 791 A VAL 196 A ILE 794 A ILE 199 A TYR 809 A TYR 214 A ILE 810 A ILE 215 A LEU 817 A LEU 222 A PRO 818 A PRO 223 BINDING SITE FOR RESIDUE LC0 A 999 A LC0 999 Software 14 A LEU 588 A LEU 39 14 1_555 A ALA 614 A ALA 65 14 1_555 A LYS 616 A LYS 67 14 1_555 A GLU 633 A GLU 84 14 1_555 A VAL 647 A VAL 98 14 1_555 A THR 663 A THR 114 14 1_555 A GLU 664 A GLU 115 14 1_555 A CYS 666 A CYS 117 14 1_555 A HIS 776 A HIS 181 14 1_555 A ASN 783 A ASN 188 14 1_555 A LEU 785 A LEU 190 14 1_555 A GLY 795 A GLY 200 14 1_555 A ASP 796 A ASP 201 14 1_555 A PHE 797 A PHE 202 14 1_555 96 P 43 21 2