0.027711
0.000000
0.001680
0.000000
0.014516
0.000000
0.000000
0.000000
0.019192
0.00000
0.00000
0.00000
Sivaraman, J.
Husain, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
93.47
90.00
36.087
68.891
52.201
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C14 H20 N6 O5 S
384.411
n
S-ADENOSYL-L-HOMOCYSTEINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Nucleic Acids Res.
NARHAD
0389
1362-4962
10.1093/nar/gkq122
20194115
Structural basis for the methylation of G1405 in 16S rRNA by aminoglycoside resistance methyltransferase Sgm from an antibiotic producer: a diversity of active sites in m7G methyltransferases.
2010
1
2008-06-06
MAD
M
x-ray
1
0.9785
1.0
0.9798
1.0
0.9600
1.0
X8C
NSLS
0.9785, 0.9798, 0.9600
SYNCHROTRON
NSLS BEAMLINE X8C
31865.662
Sisomicin-gentamicin resistance methylase Sgm
1
man
polymer
384.411
S-ADENOSYL-L-HOMOCYSTEINE
1
syn
non-polymer
18.015
water
196
nat
water
methyltransferase
no
yes
HHHHHHH(MSE)TAPAADDRIDEIERAITKSRRYQTVAPATVRRLARAALVAARGDVPDAVKRTKRGLHEIYGAFLPPSP
PNYAALLRHLDSAVDAGDDEAVRAALLRA(MSE)SVHISTRERLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPW
(MSE)GLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPCLETQQRGSGWEVIDIV
NSPNIVVTFPTKSLGQRSKG(MSE)FQNYSQSFESQARERSCRIQRLEIGNELIYVIQK
HHHHHHHMTAPAADDRIDEIERAITKSRRYQTVAPATVRRLARAALVAARGDVPDAVKRTKRGLHEIYGAFLPPSPPNYA
ALLRHLDSAVDAGDDEAVRAALLRAMSVHISTRERLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYI
ASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFPTKSL
GQRSKGMFQNYSQSFESQARERSCRIQRLEIGNELIYVIQK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1879
Micromonospora zionensis
562
Escherichia coli
BL21 (DE3)
1
2.03
39.48
Hanging Drop
Hanging Drop, temperature 298K
298
software
repository
Initial release
Version format compliance
Refinement description
1
0
2010-06-02
1
1
2011-07-13
1
2
2017-11-01
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
RCSB
Y
PDBJ
2010-01-11
REL
REL
SAH
S-ADENOSYL-L-HOMOCYSTEINE
HOH
water
SAH
6732
2
SAH
SAH
6732
A
TIP
1
3
HOH
HOH
275
A
TIP
2
3
HOH
HOH
276
A
TIP
3
3
HOH
HOH
277
A
TIP
4
3
HOH
HOH
278
A
TIP
5
3
HOH
HOH
279
A
TIP
6
3
HOH
HOH
280
A
TIP
7
3
HOH
HOH
281
A
TIP
8
3
HOH
HOH
282
A
TIP
9
3
HOH
HOH
283
A
TIP
10
3
HOH
HOH
284
A
TIP
11
3
HOH
HOH
285
A
TIP
12
3
HOH
HOH
286
A
TIP
13
3
HOH
HOH
287
A
TIP
14
3
HOH
HOH
288
A
TIP
15
3
HOH
HOH
289
A
TIP
16
3
HOH
HOH
290
A
TIP
17
3
HOH
HOH
291
A
TIP
18
3
HOH
HOH
292
A
TIP
19
3
HOH
HOH
293
A
TIP
20
3
HOH
HOH
294
A
TIP
21
3
HOH
HOH
295
A
TIP
22
3
HOH
HOH
296
A
TIP
23
3
HOH
HOH
297
A
TIP
24
3
HOH
HOH
298
A
TIP
25
3
HOH
HOH
299
A
TIP
26
3
HOH
HOH
300
A
TIP
27
3
HOH
HOH
301
A
TIP
28
3
HOH
HOH
302
A
TIP
29
3
HOH
HOH
303
A
TIP
30
3
HOH
HOH
304
A
TIP
31
3
HOH
HOH
305
A
TIP
32
3
HOH
HOH
306
A
TIP
33
3
HOH
HOH
307
A
TIP
34
3
HOH
HOH
308
A
TIP
35
3
HOH
HOH
309
A
TIP
36
3
HOH
HOH
310
A
TIP
37
3
HOH
HOH
311
A
TIP
38
3
HOH
HOH
312
A
TIP
39
3
HOH
HOH
313
A
TIP
40
3
HOH
HOH
314
A
TIP
41
3
HOH
HOH
315
A
TIP
42
3
HOH
HOH
316
A
TIP
43
3
HOH
HOH
317
A
TIP
44
3
HOH
HOH
318
A
TIP
45
3
HOH
HOH
319
A
TIP
46
3
HOH
HOH
320
A
TIP
47
3
HOH
HOH
321
A
TIP
48
3
HOH
HOH
322
A
TIP
49
3
HOH
HOH
323
A
TIP
50
3
HOH
HOH
324
A
TIP
51
3
HOH
HOH
325
A
TIP
52
3
HOH
HOH
326
A
TIP
53
3
HOH
HOH
327
A
TIP
54
3
HOH
HOH
328
A
TIP
55
3
HOH
HOH
329
A
TIP
56
3
HOH
HOH
330
A
TIP
57
3
HOH
HOH
331
A
TIP
58
3
HOH
HOH
332
A
TIP
59
3
HOH
HOH
333
A
TIP
60
3
HOH
HOH
334
A
TIP
61
3
HOH
HOH
335
A
TIP
62
3
HOH
HOH
336
A
TIP
63
3
HOH
HOH
337
A
TIP
64
3
HOH
HOH
338
A
TIP
65
3
HOH
HOH
339
A
TIP
66
3
HOH
HOH
340
A
TIP
67
3
HOH
HOH
341
A
TIP
68
3
HOH
HOH
342
A
TIP
69
3
HOH
HOH
343
A
TIP
70
3
HOH
HOH
344
A
TIP
71
3
HOH
HOH
345
A
TIP
72
3
HOH
HOH
346
A
TIP
73
3
HOH
HOH
347
A
TIP
74
3
HOH
HOH
348
A
TIP
75
3
HOH
HOH
349
A
TIP
76
3
HOH
HOH
350
A
TIP
77
3
HOH
HOH
351
A
TIP
78
3
HOH
HOH
352
A
TIP
79
3
HOH
HOH
353
A
TIP
80
3
HOH
HOH
354
A
TIP
81
3
HOH
HOH
355
A
TIP
82
3
HOH
HOH
356
A
TIP
83
3
HOH
HOH
357
A
TIP
84
3
HOH
HOH
358
A
TIP
85
3
HOH
HOH
359
A
TIP
86
3
HOH
HOH
360
A
TIP
87
3
HOH
HOH
361
A
TIP
88
3
HOH
HOH
362
A
TIP
89
3
HOH
HOH
363
A
TIP
90
3
HOH
HOH
364
A
TIP
91
3
HOH
HOH
365
A
TIP
92
3
HOH
HOH
366
A
TIP
93
3
HOH
HOH
367
A
TIP
94
3
HOH
HOH
368
A
TIP
95
3
HOH
HOH
369
A
TIP
96
3
HOH
HOH
370
A
TIP
97
3
HOH
HOH
371
A
TIP
98
3
HOH
HOH
372
A
TIP
99
3
HOH
HOH
373
A
TIP
100
3
HOH
HOH
374
A
TIP
101
3
HOH
HOH
375
A
TIP
102
3
HOH
HOH
376
A
TIP
103
3
HOH
HOH
377
A
TIP
104
3
HOH
HOH
378
A
TIP
105
3
HOH
HOH
379
A
TIP
106
3
HOH
HOH
380
A
TIP
107
3
HOH
HOH
381
A
TIP
108
3
HOH
HOH
382
A
TIP
109
3
HOH
HOH
383
A
TIP
110
3
HOH
HOH
384
A
TIP
111
3
HOH
HOH
385
A
TIP
112
3
HOH
HOH
386
A
TIP
113
3
HOH
HOH
387
A
TIP
114
3
HOH
HOH
388
A
TIP
115
3
HOH
HOH
389
A
TIP
116
3
HOH
HOH
390
A
TIP
117
3
HOH
HOH
391
A
TIP
118
3
HOH
HOH
392
A
TIP
119
3
HOH
HOH
393
A
TIP
120
3
HOH
HOH
394
A
TIP
121
3
HOH
HOH
395
A
TIP
122
3
HOH
HOH
396
A
TIP
123
3
HOH
HOH
397
A
TIP
124
3
HOH
HOH
398
A
TIP
125
3
HOH
HOH
399
A
TIP
126
3
HOH
HOH
400
A
TIP
127
3
HOH
HOH
401
A
TIP
128
3
HOH
HOH
402
A
TIP
129
3
HOH
HOH
403
A
TIP
130
3
HOH
HOH
404
A
TIP
131
3
HOH
HOH
405
A
TIP
132
3
HOH
HOH
406
A
TIP
133
3
HOH
HOH
407
A
TIP
134
3
HOH
HOH
408
A
TIP
136
3
HOH
HOH
409
A
TIP
137
3
HOH
HOH
410
A
TIP
138
3
HOH
HOH
411
A
TIP
139
3
HOH
HOH
412
A
TIP
140
3
HOH
HOH
413
A
TIP
141
3
HOH
HOH
414
A
TIP
142
3
HOH
HOH
415
A
TIP
143
3
HOH
HOH
416
A
TIP
144
3
HOH
HOH
417
A
TIP
145
3
HOH
HOH
418
A
TIP
146
3
HOH
HOH
419
A
TIP
147
3
HOH
HOH
420
A
TIP
149
3
HOH
HOH
421
A
TIP
150
3
HOH
HOH
422
A
TIP
151
3
HOH
HOH
423
A
TIP
152
3
HOH
HOH
424
A
TIP
153
3
HOH
HOH
425
A
TIP
154
3
HOH
HOH
426
A
TIP
155
3
HOH
HOH
427
A
TIP
156
3
HOH
HOH
428
A
TIP
157
3
HOH
HOH
429
A
TIP
158
3
HOH
HOH
430
A
TIP
159
3
HOH
HOH
431
A
TIP
160
3
HOH
HOH
432
A
TIP
161
3
HOH
HOH
433
A
TIP
162
3
HOH
HOH
434
A
TIP
163
3
HOH
HOH
435
A
TIP
164
3
HOH
HOH
436
A
TIP
165
3
HOH
HOH
437
A
TIP
166
3
HOH
HOH
438
A
TIP
167
3
HOH
HOH
439
A
TIP
168
3
HOH
HOH
440
A
TIP
169
3
HOH
HOH
441
A
TIP
170
3
HOH
HOH
442
A
TIP
171
3
HOH
HOH
443
A
TIP
172
3
HOH
HOH
444
A
TIP
173
3
HOH
HOH
445
A
TIP
174
3
HOH
HOH
446
A
TIP
175
3
HOH
HOH
447
A
TIP
176
3
HOH
HOH
448
A
TIP
177
3
HOH
HOH
449
A
TIP
178
3
HOH
HOH
450
A
TIP
179
3
HOH
HOH
451
A
TIP
180
3
HOH
HOH
452
A
TIP
181
3
HOH
HOH
453
A
TIP
182
3
HOH
HOH
454
A
TIP
183
3
HOH
HOH
455
A
TIP
184
3
HOH
HOH
456
A
TIP
185
3
HOH
HOH
457
A
TIP
186
3
HOH
HOH
458
A
TIP
187
3
HOH
HOH
459
A
TIP
188
3
HOH
HOH
460
A
TIP
189
3
HOH
HOH
461
A
TIP
190
3
HOH
HOH
462
A
TIP
191
3
HOH
HOH
463
A
TIP
192
3
HOH
HOH
464
A
TIP
193
3
HOH
HOH
465
A
TIP
194
3
HOH
HOH
466
A
TIP
195
3
HOH
HOH
467
A
TIP
196
3
HOH
HOH
468
A
TIP
197
3
HOH
HOH
469
A
TIP
198
3
HOH
HOH
470
A
n
1
-6
A
n
2
-5
A
n
3
-4
A
n
4
-3
A
n
5
-2
A
n
6
-1
A
n
7
0
A
n
8
1
A
n
9
2
A
n
10
3
A
n
11
4
A
n
12
5
A
n
13
6
A
n
14
7
A
ASP
8
n
15
ASP
8
A
ARG
9
n
16
ARG
9
A
ILE
10
n
17
ILE
10
A
ASP
11
n
18
ASP
11
A
GLU
12
n
19
GLU
12
A
ILE
13
n
20
ILE
13
A
GLU
14
n
21
GLU
14
A
ARG
15
n
22
ARG
15
A
ALA
16
n
23
ALA
16
A
ILE
17
n
24
ILE
17
A
THR
18
n
25
THR
18
A
LYS
19
n
26
LYS
19
A
SER
20
n
27
SER
20
A
ARG
21
n
28
ARG
21
A
ARG
22
n
29
ARG
22
A
TYR
23
n
30
TYR
23
A
GLN
24
n
31
GLN
24
A
THR
25
n
32
THR
25
A
VAL
26
n
33
VAL
26
A
ALA
27
n
34
ALA
27
A
PRO
28
n
35
PRO
28
A
ALA
29
n
36
ALA
29
A
THR
30
n
37
THR
30
A
VAL
31
n
38
VAL
31
A
ARG
32
n
39
ARG
32
A
ARG
33
n
40
ARG
33
A
LEU
34
n
41
LEU
34
A
ALA
35
n
42
ALA
35
A
ARG
36
n
43
ARG
36
A
ALA
37
n
44
ALA
37
A
ALA
38
n
45
ALA
38
A
LEU
39
n
46
LEU
39
A
VAL
40
n
47
VAL
40
A
ALA
41
n
48
ALA
41
A
ALA
42
n
49
ALA
42
A
ARG
43
n
50
ARG
43
A
GLY
44
n
51
GLY
44
A
ASP
45
n
52
ASP
45
A
VAL
46
n
53
VAL
46
A
PRO
47
n
54
PRO
47
A
ASP
48
n
55
ASP
48
A
ALA
49
n
56
ALA
49
A
VAL
50
n
57
VAL
50
A
LYS
51
n
58
LYS
51
A
ARG
52
n
59
ARG
52
A
THR
53
n
60
THR
53
A
LYS
54
n
61
LYS
54
A
ARG
55
n
62
ARG
55
A
GLY
56
n
63
GLY
56
A
LEU
57
n
64
LEU
57
A
HIS
58
n
65
HIS
58
A
GLU
59
n
66
GLU
59
A
ILE
60
n
67
ILE
60
A
TYR
61
n
68
TYR
61
A
GLY
62
n
69
GLY
62
A
ALA
63
n
70
ALA
63
A
PHE
64
n
71
PHE
64
A
LEU
65
n
72
LEU
65
A
PRO
66
n
73
PRO
66
A
PRO
67
n
74
PRO
67
A
SER
68
n
75
SER
68
A
PRO
69
n
76
PRO
69
A
PRO
70
n
77
PRO
70
A
ASN
71
n
78
ASN
71
A
TYR
72
n
79
TYR
72
A
ALA
73
n
80
ALA
73
A
ALA
74
n
81
ALA
74
A
LEU
75
n
82
LEU
75
A
LEU
76
n
83
LEU
76
A
ARG
77
n
84
ARG
77
A
HIS
78
n
85
HIS
78
A
LEU
79
n
86
LEU
79
A
ASP
80
n
87
ASP
80
A
SER
81
n
88
SER
81
A
ALA
82
n
89
ALA
82
A
VAL
83
n
90
VAL
83
A
ASP
84
n
91
ASP
84
A
ALA
85
n
92
ALA
85
A
GLY
86
n
93
GLY
86
A
ASP
87
n
94
ASP
87
A
ASP
88
n
95
ASP
88
A
GLU
89
n
96
GLU
89
A
ALA
90
n
97
ALA
90
A
VAL
91
n
98
VAL
91
A
ARG
92
n
99
ARG
92
A
ALA
93
n
100
ALA
93
A
ALA
94
n
101
ALA
94
A
LEU
95
n
102
LEU
95
A
LEU
96
n
103
LEU
96
A
ARG
97
n
104
ARG
97
A
ALA
98
n
105
ALA
98
A
MSE
99
n
106
MSE
99
A
SER
100
n
107
SER
100
A
VAL
101
n
108
VAL
101
A
HIS
102
n
109
HIS
102
A
ILE
103
n
110
ILE
103
A
SER
104
n
111
SER
104
A
THR
105
n
112
THR
105
A
ARG
106
n
113
ARG
106
A
GLU
107
n
114
GLU
107
A
ARG
108
n
115
ARG
108
A
LEU
109
n
116
LEU
109
A
PRO
110
n
117
PRO
110
A
HIS
111
n
118
HIS
111
A
LEU
112
n
119
LEU
112
A
ASP
113
n
120
ASP
113
A
GLU
114
n
121
GLU
114
A
PHE
115
n
122
PHE
115
A
TYR
116
n
123
TYR
116
A
ARG
117
n
124
ARG
117
A
GLU
118
n
125
GLU
118
A
LEU
119
n
126
LEU
119
A
PHE
120
n
127
PHE
120
A
ARG
121
n
128
ARG
121
A
HIS
122
n
129
HIS
122
A
LEU
123
n
130
LEU
123
A
PRO
124
n
131
PRO
124
A
ARG
125
n
132
ARG
125
A
PRO
126
n
133
PRO
126
A
ASN
127
n
134
ASN
127
A
THR
128
n
135
THR
128
A
LEU
129
n
136
LEU
129
A
ARG
130
n
137
ARG
130
A
ASP
131
n
138
ASP
131
A
LEU
132
n
139
LEU
132
A
ALA
133
n
140
ALA
133
A
CYS
134
n
141
CYS
134
A
GLY
135
n
142
GLY
135
A
LEU
136
n
143
LEU
136
A
ASN
137
n
144
ASN
137
A
PRO
138
n
145
PRO
138
A
LEU
139
n
146
LEU
139
A
ALA
140
n
147
ALA
140
A
ALA
141
n
148
ALA
141
A
PRO
142
n
149
PRO
142
A
TRP
143
n
150
TRP
143
A
MSE
144
n
151
MSE
144
A
GLY
145
n
152
GLY
145
A
LEU
146
n
153
LEU
146
A
PRO
147
n
154
PRO
147
A
ALA
148
n
155
ALA
148
A
GLU
149
n
156
GLU
149
A
THR
150
n
157
THR
150
A
VAL
151
n
158
VAL
151
A
TYR
152
n
159
TYR
152
A
ILE
153
n
160
ILE
153
A
ALA
154
n
161
ALA
154
A
SER
155
n
162
SER
155
A
ASP
156
n
163
ASP
156
A
ILE
157
n
164
ILE
157
A
ASP
158
n
165
ASP
158
A
ALA
159
n
166
ALA
159
A
ARG
160
n
167
ARG
160
A
LEU
161
n
168
LEU
161
A
VAL
162
n
169
VAL
162
A
GLY
163
n
170
GLY
163
A
PHE
164
n
171
PHE
164
A
VAL
165
n
172
VAL
165
A
ASP
166
n
173
ASP
166
A
GLU
167
n
174
GLU
167
A
ALA
168
n
175
ALA
168
A
LEU
169
n
176
LEU
169
A
THR
170
n
177
THR
170
A
ARG
171
n
178
ARG
171
A
LEU
172
n
179
LEU
172
A
ASN
173
n
180
ASN
173
A
VAL
174
n
181
VAL
174
A
PRO
175
n
182
PRO
175
A
HIS
176
n
183
HIS
176
A
ARG
177
n
184
ARG
177
A
THR
178
n
185
THR
178
A
ASN
179
n
186
ASN
179
A
VAL
180
n
187
VAL
180
A
ALA
181
n
188
ALA
181
A
ASP
182
n
189
ASP
182
A
LEU
183
n
190
LEU
183
A
LEU
184
n
191
LEU
184
A
GLU
185
n
192
GLU
185
A
ASP
186
n
193
ASP
186
A
ARG
187
n
194
ARG
187
A
LEU
188
n
195
LEU
188
A
ASP
189
n
196
ASP
189
A
GLU
190
n
197
GLU
190
A
PRO
191
n
198
PRO
191
A
ALA
192
n
199
ALA
192
A
ASP
193
n
200
ASP
193
A
VAL
194
n
201
VAL
194
A
THR
195
n
202
THR
195
A
LEU
196
n
203
LEU
196
A
LEU
197
n
204
LEU
197
A
LEU
198
n
205
LEU
198
A
LYS
199
n
206
LYS
199
A
THR
200
n
207
THR
200
A
LEU
201
n
208
LEU
201
A
PRO
202
n
209
PRO
202
A
CYS
203
n
210
CYS
203
A
LEU
204
n
211
LEU
204
A
GLU
205
n
212
GLU
205
A
THR
206
n
213
THR
206
A
GLN
207
n
214
GLN
207
A
GLN
208
n
215
GLN
208
A
ARG
209
n
216
ARG
209
A
GLY
210
n
217
GLY
210
A
SER
211
n
218
SER
211
A
GLY
212
n
219
GLY
212
A
TRP
213
n
220
TRP
213
A
GLU
214
n
221
GLU
214
A
VAL
215
n
222
VAL
215
A
ILE
216
n
223
ILE
216
A
ASP
217
n
224
ASP
217
A
ILE
218
n
225
ILE
218
A
VAL
219
n
226
VAL
219
A
ASN
220
n
227
ASN
220
A
SER
221
n
228
SER
221
A
PRO
222
n
229
PRO
222
A
ASN
223
n
230
ASN
223
A
ILE
224
n
231
ILE
224
A
VAL
225
n
232
VAL
225
A
VAL
226
n
233
VAL
226
A
THR
227
n
234
THR
227
A
PHE
228
n
235
PHE
228
A
PRO
229
n
236
PRO
229
A
THR
230
n
237
THR
230
A
LYS
231
n
238
LYS
231
A
n
239
232
A
n
240
233
A
n
241
234
A
n
242
235
A
n
243
236
A
n
244
237
A
n
245
238
A
GLY
239
n
246
GLY
239
A
MSE
240
n
247
MSE
240
A
PHE
241
n
248
PHE
241
A
GLN
242
n
249
GLN
242
A
ASN
243
n
250
ASN
243
A
TYR
244
n
251
TYR
244
A
SER
245
n
252
SER
245
A
GLN
246
n
253
GLN
246
A
SER
247
n
254
SER
247
A
PHE
248
n
255
PHE
248
A
GLU
249
n
256
GLU
249
A
SER
250
n
257
SER
250
A
GLN
251
n
258
GLN
251
A
ALA
252
n
259
ALA
252
A
ARG
253
n
260
ARG
253
A
GLU
254
n
261
GLU
254
A
ARG
255
n
262
ARG
255
A
SER
256
n
263
SER
256
A
CYS
257
n
264
CYS
257
A
ARG
258
n
265
ARG
258
A
ILE
259
n
266
ILE
259
A
GLN
260
n
267
GLN
260
A
ARG
261
n
268
ARG
261
A
LEU
262
n
269
LEU
262
A
GLU
263
n
270
GLU
263
A
ILE
264
n
271
ILE
264
A
GLY
265
n
272
GLY
265
A
ASN
266
n
273
ASN
266
A
GLU
267
n
274
GLU
267
A
LEU
268
n
275
LEU
268
A
ILE
269
n
276
ILE
269
A
TYR
270
n
277
TYR
270
A
VAL
271
n
278
VAL
271
A
ILE
272
n
279
ILE
272
A
GLN
273
n
280
GLN
273
A
LYS
274
n
281
LYS
274
A
author_and_software_defined_assembly
PISA
1
monomeric
A
MSE
99
SELENOMETHIONINE
A
MSE
106
MET
A
MSE
144
SELENOMETHIONINE
A
MSE
151
MET
A
MSE
240
SELENOMETHIONINE
A
MSE
247
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
179
A
O
ASN
186
A
N
ALA
154
A
N
ALA
161
A
O
ILE
153
A
O
ILE
160
A
N
LEU
129
A
N
LEU
136
A
N
ARG
130
A
N
ARG
137
A
O
LEU
196
A
O
LEU
203
A
N
LEU
197
A
N
LEU
204
A
O
VAL
225
A
O
VAL
232
A
N
ILE
224
A
N
ILE
231
A
O
ILE
272
A
O
ILE
279
A
O
ILE
269
A
O
ILE
276
A
N
LEU
262
A
N
LEU
269
1
A
HIS
-6
A
HIS
1
1
Y
1
A
HIS
-5
A
HIS
2
1
Y
1
A
HIS
-4
A
HIS
3
1
Y
1
A
HIS
-3
A
HIS
4
1
Y
1
A
HIS
-2
A
HIS
5
1
Y
1
A
HIS
-1
A
HIS
6
1
Y
1
A
HIS
0
A
HIS
7
1
Y
1
A
MSE
1
A
MSE
8
1
Y
1
A
THR
2
A
THR
9
1
Y
1
A
ALA
3
A
ALA
10
1
Y
1
A
PRO
4
A
PRO
11
1
Y
1
A
ALA
5
A
ALA
12
1
Y
1
A
ALA
6
A
ALA
13
1
Y
1
A
ASP
7
A
ASP
14
1
Y
1
A
SER
232
A
SER
239
1
Y
1
A
LEU
233
A
LEU
240
1
Y
1
A
GLY
234
A
GLY
241
1
Y
1
A
GLN
235
A
GLN
242
1
Y
1
A
ARG
236
A
ARG
243
1
Y
1
A
SER
237
A
SER
244
1
Y
1
A
LYS
238
A
LYS
245
1
Y
1
A
A
O
O
PRO
ALA
138
140
2.16
1
-16.65
2.70
111.00
94.35
A
A
A
N
CA
C
ASN
ASN
ASN
127
127
127
N
1
-18.76
2.70
111.00
92.24
A
A
A
N
CA
C
ALA
ALA
ALA
140
140
140
N
1
A
THR
18
-62.05
5.67
1
A
LYS
19
-7.56
93.89
1
A
ARG
21
87.45
-104.87
1
A
TYR
61
-134.49
-64.88
1
A
THR
128
91.55
113.27
1
A
ALA
141
145.46
-45.07
1
A
GLU
185
-145.25
-42.01
1
A
ASN
266
-96.34
37.33
protein_rep.param
water_rep.param
SAHnew.param
117.31
26.53
8.05
3.697
0.000
0.912
1.295
0.000
-4.992
0.2586
0.2046
0.2046
2.10
50.00
1679
26514
5.7
90.5
1.00
0.52
1
MAD
41.24
2.10
50.00
196
2282
26
0
2060
2.10
50.00
3LCU
33837
28242
1
83.5
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns-online.org/
CNS
package
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.005
Sisomicin-gentamicin resistance methylase Sgm
Crystal Structure of Antibiotic related Methyltransferase
1
N
N
2
N
N
3
N
N
A
ASP
8
A
ASP
15
HELX_P
A
THR
18
A
THR
25
1
1
11
A
ALA
27
A
ALA
34
HELX_P
A
ALA
42
A
ALA
49
1
2
16
A
ASP
45
A
ASP
52
HELX_P
A
TYR
61
A
TYR
68
1
3
17
A
ASN
71
A
ASN
78
HELX_P
A
ALA
85
A
ALA
92
1
4
15
A
ASP
87
A
ASP
94
HELX_P
A
SER
100
A
SER
107
1
5
14
A
HIS
102
A
HIS
109
HELX_P
A
GLU
107
A
GLU
114
1
6
6
A
ARG
108
A
ARG
115
HELX_P
A
PRO
110
A
PRO
117
5
7
3
A
HIS
111
A
HIS
118
HELX_P
A
PHE
120
A
PHE
127
1
8
10
A
ARG
121
A
ARG
128
HELX_P
A
LEU
123
A
LEU
130
5
9
3
A
LEU
136
A
LEU
143
HELX_P
A
ALA
140
A
ALA
147
5
10
5
A
ASP
158
A
ASP
165
HELX_P
A
LEU
172
A
LEU
179
1
11
15
A
THR
200
A
THR
207
HELX_P
A
GLN
208
A
GLN
215
1
12
9
A
GLY
210
A
GLY
217
HELX_P
A
VAL
219
A
VAL
226
1
13
10
A
GLY
239
A
GLY
246
HELX_P
A
GLU
254
A
GLU
261
1
14
16
covale
1.331
A
ALA
98
A
C
ALA
105
1_555
A
MSE
99
A
N
MSE
106
1_555
covale
1.333
A
MSE
99
A
C
MSE
106
1_555
A
SER
100
A
N
SER
107
1_555
covale
1.327
A
TRP
143
A
C
TRP
150
1_555
A
MSE
144
A
N
MSE
151
1_555
covale
1.332
A
MSE
144
A
C
MSE
151
1_555
A
GLY
145
A
N
GLY
152
1_555
covale
1.327
A
GLY
239
A
C
GLY
246
1_555
A
MSE
240
A
N
MSE
247
1_555
covale
1.331
A
MSE
240
A
C
MSE
247
1_555
A
PHE
241
A
N
PHE
248
1_555
TRANSFERASE
Antibiotic Resistance, Methyltransferase, TRANSFERASE
Q7M0R2_9ACTO
UNP
1
1
Q7M0R2
MTAPAADDRIDEIERAITKSRRYQTVAPATVRRLARAALVAARGDVPDAVKRTKRGLHEIYGAFLPPSPPNYAALLRHLD
SAVDAGDDEAVRAALLRAMSVHISTRERLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDAR
LVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGM
FQNYSQSFESQARERSCRIQRLEIGNELIYVIQK
1
274
3LCU
1
274
Q7M0R2
A
1
8
281
1
EXPRESSION TAG
HIS
-6
3LCU
A
Q7M0R2
UNP
1
1
EXPRESSION TAG
HIS
-5
3LCU
A
Q7M0R2
UNP
2
1
EXPRESSION TAG
HIS
-4
3LCU
A
Q7M0R2
UNP
3
1
EXPRESSION TAG
HIS
-3
3LCU
A
Q7M0R2
UNP
4
1
EXPRESSION TAG
HIS
-2
3LCU
A
Q7M0R2
UNP
5
1
EXPRESSION TAG
HIS
-1
3LCU
A
Q7M0R2
UNP
6
1
EXPRESSION TAG
HIS
0
3LCU
A
Q7M0R2
UNP
7
7
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
HIS
176
A
HIS
183
A
VAL
180
A
VAL
187
A
TYR
152
A
TYR
159
A
ASP
156
A
ASP
163
A
LEU
129
A
LEU
136
A
ASP
131
A
ASP
138
A
VAL
194
A
VAL
201
A
LEU
197
A
LEU
204
A
ASN
223
A
ASN
230
A
PRO
229
A
PRO
236
A
GLU
267
A
GLU
274
A
GLN
273
A
GLN
280
A
ARG
258
A
ARG
265
A
ILE
264
A
ILE
271
BINDING SITE FOR RESIDUE SAH A 6732
Software
19
A
ILE
60
A
ILE
67
19
1_555
A
TYR
61
A
TYR
68
19
1_555
A
HIS
102
A
HIS
109
19
1_555
A
SER
104
A
SER
111
19
1_555
A
THR
105
A
THR
112
19
1_555
A
ARG
108
A
ARG
115
19
1_555
A
ALA
133
A
ALA
140
19
1_555
A
CYS
134
A
CYS
141
19
1_555
A
ASP
156
A
ASP
163
19
1_555
A
ILE
157
A
ILE
164
19
1_555
A
ALA
181
A
ALA
188
19
1_555
A
ASP
182
A
ASP
189
19
1_555
A
LEU
183
A
LEU
190
19
1_555
A
LEU
198
A
LEU
205
19
1_555
A
LYS
199
A
LYS
206
19
1_555
A
GLN
207
A
GLN
214
19
1_555
A
HOH
280
C
HOH
19
1_555
A
HOH
447
C
HOH
19
1_555
A
HOH
470
C
HOH
19
1_555
4
P 1 21 1