0.025030 0.000000 0.000000 0.000000 0.025030 0.000000 0.000000 0.000000 0.012403 0.00000 0.00000 0.00000 Senturia, R. Cascio, D. Sawaya, M. Guo, F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 39.952 39.952 80.626 C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N C N 8 N N N 9 N C N 10 N N N 11 N N N 12 N O N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N N N 29 S C N 30 N C N 31 N O N 32 N C N 33 N C N 34 N O N 35 N N N 36 N O N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N N N 46 S C N 47 N C N 48 N O N 49 N C N 50 N C N 51 N O N 52 N O N 53 N O N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N N N 62 R C N 63 N C N 64 N O N 65 N C N 66 N S N 67 N O N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N N N 76 S C N 77 N C N 78 N O N 79 N C N 80 N C N 81 N C N 82 N O N 83 N N N 84 N O N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N C N 102 N O N 103 N O N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N N N 115 N C N 116 N C N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N N N 125 S C N 126 N C N 127 N O N 128 N C Y 129 N C Y 130 N N Y 131 N C Y 132 N C Y 133 N N N 134 N O N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N O N 146 N H N 147 N H N 148 N N N 149 S C N 150 N C N 151 N O N 152 S C N 153 N C N 154 N C N 155 N C N 156 N O N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C N 175 N C N 176 N C N 177 N C N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N N N 193 S C N 194 N C N 195 N O N 196 N C N 197 N C N 198 N C N 199 N C N 200 N N N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N S N 224 N C N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C Y 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C N 265 N C N 266 N C N 267 N O N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 N C N 282 N O N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 R C N 296 N O N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N N Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C Y 345 N C N 346 N O N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C N 364 N C N 365 N C N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N doub N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N doub N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N doub N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing Y 128 N sing Y 129 N doub Y 130 N doub N 131 N sing Y 132 N sing N 133 N sing Y 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing Y 236 N doub Y 237 N sing Y 238 N sing N 239 N sing Y 240 N doub N 241 N sing Y 242 N doub N 243 N sing Y 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing Y 305 N doub Y 306 N sing Y 307 N sing N 308 N sing Y 309 N doub Y 310 N sing Y 311 N sing N 312 N sing Y 313 N sing Y 314 N doub N 315 N sing Y 316 N doub N 317 N sing Y 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing Y 333 N doub Y 334 N sing Y 335 N sing N 336 N sing Y 337 N doub N 338 N sing Y 339 N doub N 340 N sing Y 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing US Protein Sci. PRCIEI 0795 0961-8368 19 1354 1365 10.1002/pro.414 20506313 Structure of the dimerization domain of DiGeorge Critical Region 8 2010 10.2210/pdb3le4/pdb pdb_00003le4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2009-03-29 ADSC QUANTUM 315 Cryogenically-cooled single crystal Si(111) side bounce monochromator. Optional Si(311) to achive 13.474 keV. SINGLE WAVELENGTH M x-ray 1 0.97918 1.0 24-ID-E APS 0.97918 SYNCHROTRON APS BEAMLINE 24-ID-E 8888.265 Microprocessor complex subunit DGCR8 Dimerization domain (UNP residues 275 to 353) 1 man polymer 18.015 water 36 nat water DiGeorge syndrome critical region 8 no no SDGETSVQPMMTKIKTVLKSRGRPPTEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLGTGSIRKHDPPLSSIPCL SDGETSVQPMMTKIKTVLKSRGRPPTEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLGTGSIRKHDPPLSSIPCL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample DGCR8, C22orf12, DGCRK6, LP4941 9606 Homo sapiens 562 Escherichia coli 1 1.81 32.04 VAPOR DIFFUSION, HANGING DROP 5.5 0.2 M ammonium acetate, 100 mM Bis-Tris pH 5.5, 25% polyethylene glycol 3350, 10 mM nicotinamide adenine dinucleotide, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Data collection Database references 1 0 2010-07-07 1 1 2011-07-13 1 2 2024-02-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y RCSB 2010-01-14 REL REL HOH water HOH 1 2 HOH HOH 1 A HOH 2 2 HOH HOH 2 A HOH 3 2 HOH HOH 3 A HOH 4 2 HOH HOH 4 A HOH 7 2 HOH HOH 7 A HOH 8 2 HOH HOH 8 A HOH 10 2 HOH HOH 10 A HOH 12 2 HOH HOH 12 A HOH 15 2 HOH HOH 15 A HOH 18 2 HOH HOH 18 A HOH 21 2 HOH HOH 21 A HOH 22 2 HOH HOH 22 A HOH 24 2 HOH HOH 24 A HOH 27 2 HOH HOH 27 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 32 2 HOH HOH 32 A HOH 33 2 HOH HOH 33 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 45 2 HOH HOH 45 A HOH 46 2 HOH HOH 46 A HOH 48 2 HOH HOH 48 A HOH 49 2 HOH HOH 49 A HOH 50 2 HOH HOH 50 A HOH 51 2 HOH HOH 51 A HOH 52 2 HOH HOH 52 A HOH 53 2 HOH HOH 53 A HOH 54 2 HOH HOH 54 A HOH 55 2 HOH HOH 55 A n 1 275 A n 2 276 A n 3 277 A n 4 278 A n 5 279 A n 6 280 A n 7 281 A n 8 282 A n 9 283 A n 10 284 A n 11 285 A n 12 286 A n 13 287 A n 14 288 A n 15 289 A n 16 290 A n 17 291 A n 18 292 A n 19 293 A n 20 294 A n 21 295 A n 22 296 A n 23 297 A PRO 298 n 24 PRO 298 A PRO 299 n 25 PRO 299 A THR 300 n 26 THR 300 A GLU 301 n 27 GLU 301 A PRO 302 n 28 PRO 302 A LEU 303 n 29 LEU 303 A PRO 304 n 30 PRO 304 A ASP 305 n 31 ASP 305 A GLY 306 n 32 GLY 306 A TRP 307 n 33 TRP 307 A ILE 308 n 34 ILE 308 A MET 309 n 35 MET 309 A THR 310 n 36 THR 310 A PHE 311 n 37 PHE 311 A HIS 312 n 38 HIS 312 A ASN 313 n 39 ASN 313 A SER 314 n 40 SER 314 A GLY 315 n 41 GLY 315 A VAL 316 n 42 VAL 316 A PRO 317 n 43 PRO 317 A VAL 318 n 44 VAL 318 A TYR 319 n 45 TYR 319 A LEU 320 n 46 LEU 320 A HIS 321 n 47 HIS 321 A ARG 322 n 48 ARG 322 A GLU 323 n 49 GLU 323 A SER 324 n 50 SER 324 A ARG 325 n 51 ARG 325 A VAL 326 n 52 VAL 326 A VAL 327 n 53 VAL 327 A THR 328 n 54 THR 328 A TRP 329 n 55 TRP 329 A SER 330 n 56 SER 330 A ARG 331 n 57 ARG 331 A PRO 332 n 58 PRO 332 A TYR 333 n 59 TYR 333 A PHE 334 n 60 PHE 334 A LEU 335 n 61 LEU 335 A GLY 336 n 62 GLY 336 A THR 337 n 63 THR 337 A GLY 338 n 64 GLY 338 A SER 339 n 65 SER 339 A ILE 340 n 66 ILE 340 A ARG 341 n 67 ARG 341 A LYS 342 n 68 LYS 342 A HIS 343 n 69 HIS 343 A ASP 344 n 70 ASP 344 A PRO 345 n 71 PRO 345 A PRO 346 n 72 PRO 346 A LEU 347 n 73 LEU 347 A SER 348 n 74 SER 348 A SER 349 n 75 SER 349 A ILE 350 n 76 ILE 350 A PRO 351 n 77 PRO 351 A CYS 352 n 78 CYS 352 A n 79 353 A author_and_software_defined_assembly PISA 2 dimeric 2600 -17 6550 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_665 -y+1,-x+1,-z+1/2 crystal symmetry operation 39.9520000000 39.9520000000 40.3130000000 A N THR 310 A N THR 36 A O VAL 318 A O VAL 44 A N HIS 321 A N HIS 47 A O VAL 326 A O VAL 52 1 A SER 275 A SER 1 1 Y 1 A ASP 276 A ASP 2 1 Y 1 A GLY 277 A GLY 3 1 Y 1 A GLU 278 A GLU 4 1 Y 1 A THR 279 A THR 5 1 Y 1 A SER 280 A SER 6 1 Y 1 A VAL 281 A VAL 7 1 Y 1 A GLN 282 A GLN 8 1 Y 1 A PRO 283 A PRO 9 1 Y 1 A MET 284 A MET 10 1 Y 1 A MET 285 A MET 11 1 Y 1 A THR 286 A THR 12 1 Y 1 A LYS 287 A LYS 13 1 Y 1 A ILE 288 A ILE 14 1 Y 1 A LYS 289 A LYS 15 1 Y 1 A THR 290 A THR 16 1 Y 1 A VAL 291 A VAL 17 1 Y 1 A LEU 292 A LEU 18 1 Y 1 A LYS 293 A LYS 19 1 Y 1 A SER 294 A SER 20 1 Y 1 A ARG 295 A ARG 21 1 Y 1 A GLY 296 A GLY 22 1 Y 1 A ARG 297 A ARG 23 1 Y 1 A LEU 353 A LEU 79 1 Y 0.2130 0.1808 0.1823 1.701 28.250 347 7721 7721 4.67 96.85 0.14 Random 1 0.04 SAD 0.90 1.11 ML FLAT BULK SOLVENT MODEL 68.549 0.430 1.701 28.250 36 476 0 0 440 0.009 475 1.327 652 13.981 174 0.083 68 0.006 84 0.1989 0.1667 1.76 149 3389 95.00 0.2171 0.1855 28.2542 198 3699 99.00 1.7 28.3 3LE4 7721 7721 1 99.9 1.70 1.76 100 data collection ADSC Quantum phasing SHELXS refinement PHENIX (phenix.refine) data reduction HKL-2000 data scaling HKL-2000 Y Crystal structure of the DGCR8 dimerization domain 1 N N 2 N N A PRO 346 A PRO 72 HELX_P A ILE 350 A ILE 76 5 1 5 NUCLEAR PROTEIN WW motif, dimerization, 3D domain swapping, heme binding, microRNA processing, Heme, Iron, Metal-binding, Nucleus, Phosphoprotein, RNA-binding, NUCLEAR PROTEIN DGCR8_HUMAN UNP 1 275 Q8WYQ5 SDGETSVQPMMTKIKTVLKSRGRPPTEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLGTGSIRKHDPPLSSIPCL 275 353 3LE4 275 353 Q8WYQ5 A 1 1 79 3 anti-parallel anti-parallel A TRP 307 A TRP 33 A PHE 311 A PHE 37 A PRO 317 A PRO 43 A HIS 321 A HIS 47 A VAL 326 A VAL 52 A THR 328 A THR 54 96 P 43 21 2