0.027587 0.000000 0.003421 0.000000 0.012475 0.000000 0.000000 0.000000 0.013968 0.00000 0.00000 0.00000 Ofek, G. Guenaga, F.J. Schief, W.R. Skinner, J. Baker, D. Wyatt, R. Kwong, P.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 97.07 90.00 36.249 80.160 72.139 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 107 17880 17887 10.1073/pnas.1004728107 20876137 Elicitation of structure-specific antibodies by epitope scaffolds. 2010 100 1 IMAGE PLATE 2009-04-02 MAR scanner 300 mm plate SI (220) SINGLE WAVELENGTH M x-ray 1 1.000 1.0 22-BM APS 1.000 SYNCHROTRON APS BEAMLINE 22-BM 23891.727 6a7 Antibody Heavy Chain 1 nat polymer 24198.973 6a7 Antibody Light Chain 1 nat polymer 986.165 Envelope glycoprotein gp41 1 syn polymer 65.409 ZINC ION 3 syn non-polymer 18.015 water 331 nat water no no DVQLQESGPGLVKPSQSLSLTCTVTGYLITTDYAWNWIRQFPGNKLEWMGYISYSGFTSYNPSLKSQISITRDTSKNQFF LQLNSVTTEDTATYYCAFGNYLPAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIK DVQLQESGPGLVKPSQSLSLTCTVTGYLITTDYAWNWIRQFPGNKLEWMGYISYSGFTSYNPSLKSQISITRDTSKNQFF LQLNSVTTEDTATYYCAFGNYLPAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIK H polypeptide(L) no no DVVMTQTPLSLSVTLGQPASISCKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSKLASGVPDRFTGSGSGTDFTLKI NRVEAEDLGIYYCWQGTHFPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC DVVMTQTPLSLSVTLGQPASISCKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSKLASGVPDRFTGSGSGTDFTLKI NRVEAEDLGIYYCWQGTHFPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC L polypeptide(L) no yes LLELDKWA(NH2) LLELDKWAX P polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse sample hybridoma myeloma cell line FO 10090 Mus musculus BALB/c mouse sample hybridoma myeloma cell line FO 10090 Mus musculus BALB/c 1 2.13 42.27 VAPOR DIFFUSION, HANGING DROP 4.5 31.5 % PEG 1000, 0.2 M Zn(CH3COO)2, 0.1 M CH3COONA PH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 repository Initial release Version format compliance 1 0 2010-09-29 1 1 2011-07-13 2F5 Epitope scaffold ES2 HIV-1 ANTIBODY 2F5 IN COMPLEX WITH EPITOPE SCAFFOLD ES2 2F5 Epitope scaffold elicited anti-HIV-1 monoclonal antibody 11F10 in complex with HIV-1 GP41 Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 17mer RCSB Y RCSB 2010-01-15 REL REL ZN ZINC ION HOH water HIV-1 gp41 peptide 11676 Human immunodeficiency virus 1 sample ZN 222 4 ZN ZN 222 H ZN 223 4 ZN ZN 223 H ZN 233 4 ZN ZN 233 L HOH 224 5 HOH HOH 224 H HOH 225 5 HOH HOH 225 H HOH 226 5 HOH HOH 226 H HOH 227 5 HOH HOH 227 H HOH 228 5 HOH HOH 228 H HOH 229 5 HOH HOH 229 H HOH 230 5 HOH HOH 230 H HOH 231 5 HOH HOH 231 H HOH 232 5 HOH HOH 232 H HOH 233 5 HOH HOH 233 H HOH 234 5 HOH HOH 234 H HOH 235 5 HOH HOH 235 H HOH 236 5 HOH HOH 236 H HOH 237 5 HOH HOH 237 H HOH 238 5 HOH HOH 238 H HOH 239 5 HOH HOH 239 H HOH 240 5 HOH HOH 240 H HOH 241 5 HOH HOH 241 H HOH 242 5 HOH HOH 242 H HOH 243 5 HOH HOH 243 H HOH 244 5 HOH HOH 244 H HOH 245 5 HOH HOH 245 H HOH 246 5 HOH HOH 246 H HOH 247 5 HOH HOH 247 H HOH 248 5 HOH HOH 248 H HOH 249 5 HOH HOH 249 H HOH 250 5 HOH HOH 250 H HOH 251 5 HOH HOH 251 H HOH 252 5 HOH HOH 252 H HOH 253 5 HOH HOH 253 H HOH 254 5 HOH HOH 254 H HOH 255 5 HOH HOH 255 H HOH 256 5 HOH HOH 256 H HOH 257 5 HOH HOH 257 H HOH 258 5 HOH HOH 258 H HOH 259 5 HOH HOH 259 H HOH 260 5 HOH HOH 260 H HOH 261 5 HOH HOH 261 H HOH 262 5 HOH HOH 262 H HOH 263 5 HOH HOH 263 H HOH 264 5 HOH HOH 264 H HOH 265 5 HOH HOH 265 H HOH 266 5 HOH HOH 266 H HOH 267 5 HOH HOH 267 H HOH 268 5 HOH HOH 268 H HOH 269 5 HOH HOH 269 H HOH 270 5 HOH HOH 270 H HOH 271 5 HOH HOH 271 H HOH 272 5 HOH HOH 272 H HOH 273 5 HOH HOH 273 H HOH 274 5 HOH HOH 274 H HOH 275 5 HOH HOH 275 H HOH 276 5 HOH HOH 276 H HOH 277 5 HOH HOH 277 H HOH 278 5 HOH HOH 278 H HOH 279 5 HOH HOH 279 H HOH 280 5 HOH HOH 280 H HOH 281 5 HOH HOH 281 H HOH 282 5 HOH HOH 282 H HOH 283 5 HOH HOH 283 H HOH 284 5 HOH HOH 284 H HOH 285 5 HOH HOH 285 H HOH 286 5 HOH HOH 286 H HOH 287 5 HOH HOH 287 H HOH 288 5 HOH HOH 288 H HOH 289 5 HOH HOH 289 H HOH 290 5 HOH HOH 290 H HOH 291 5 HOH HOH 291 H HOH 292 5 HOH HOH 292 H HOH 293 5 HOH HOH 293 H HOH 294 5 HOH HOH 294 H HOH 295 5 HOH HOH 295 H HOH 296 5 HOH HOH 296 H HOH 297 5 HOH HOH 297 H HOH 298 5 HOH HOH 298 H HOH 299 5 HOH HOH 299 H HOH 300 5 HOH HOH 300 H HOH 301 5 HOH HOH 301 H HOH 302 5 HOH HOH 302 H HOH 303 5 HOH HOH 303 H HOH 304 5 HOH HOH 304 H HOH 305 5 HOH HOH 305 H HOH 306 5 HOH HOH 306 H HOH 307 5 HOH HOH 307 H HOH 308 5 HOH HOH 308 H HOH 309 5 HOH HOH 309 H HOH 310 5 HOH HOH 310 H HOH 311 5 HOH HOH 311 H HOH 312 5 HOH HOH 312 H HOH 313 5 HOH HOH 313 H HOH 314 5 HOH HOH 314 H HOH 315 5 HOH HOH 315 H HOH 316 5 HOH HOH 316 H HOH 317 5 HOH HOH 317 H HOH 318 5 HOH HOH 318 H HOH 319 5 HOH HOH 319 H HOH 320 5 HOH HOH 320 H HOH 321 5 HOH HOH 321 H HOH 322 5 HOH HOH 322 H HOH 323 5 HOH HOH 323 H HOH 324 5 HOH HOH 324 H HOH 325 5 HOH HOH 325 H HOH 326 5 HOH HOH 326 H HOH 327 5 HOH HOH 327 H HOH 328 5 HOH HOH 328 H HOH 329 5 HOH HOH 329 H HOH 330 5 HOH HOH 330 H HOH 331 5 HOH HOH 331 H HOH 332 5 HOH HOH 332 H HOH 333 5 HOH HOH 333 H HOH 334 5 HOH HOH 334 H HOH 335 5 HOH HOH 335 H HOH 336 5 HOH HOH 336 H HOH 337 5 HOH HOH 337 H HOH 338 5 HOH HOH 338 H HOH 339 5 HOH HOH 339 H HOH 340 5 HOH HOH 340 H HOH 341 5 HOH HOH 341 H HOH 342 5 HOH HOH 342 H HOH 343 5 HOH HOH 343 H HOH 344 5 HOH HOH 344 H HOH 345 5 HOH HOH 345 H HOH 346 5 HOH HOH 346 H HOH 347 5 HOH HOH 347 H HOH 348 5 HOH HOH 348 H HOH 349 5 HOH HOH 349 H HOH 350 5 HOH HOH 350 H HOH 351 5 HOH HOH 351 H HOH 352 5 HOH HOH 352 H HOH 353 5 HOH HOH 353 H HOH 354 5 HOH HOH 354 H HOH 355 5 HOH HOH 355 H HOH 356 5 HOH HOH 356 H HOH 357 5 HOH HOH 357 H HOH 358 5 HOH HOH 358 H HOH 359 5 HOH HOH 359 H HOH 360 5 HOH HOH 360 H HOH 361 5 HOH HOH 361 H HOH 362 5 HOH HOH 362 H HOH 363 5 HOH HOH 363 H HOH 364 5 HOH HOH 364 H HOH 365 5 HOH HOH 365 H HOH 366 5 HOH HOH 366 H HOH 367 5 HOH HOH 367 H HOH 368 5 HOH HOH 368 H HOH 369 5 HOH HOH 369 H HOH 370 5 HOH HOH 370 H HOH 371 5 HOH HOH 371 H HOH 372 5 HOH HOH 372 H HOH 373 5 HOH HOH 373 H HOH 374 5 HOH HOH 374 H HOH 375 5 HOH HOH 375 H HOH 376 5 HOH HOH 376 H HOH 377 5 HOH HOH 377 H HOH 378 5 HOH HOH 378 H HOH 379 5 HOH HOH 379 H HOH 380 5 HOH HOH 380 H HOH 381 5 HOH HOH 381 H HOH 382 5 HOH HOH 382 H HOH 383 5 HOH HOH 383 H HOH 384 5 HOH HOH 384 H HOH 385 5 HOH HOH 385 H HOH 386 5 HOH HOH 386 H HOH 387 5 HOH HOH 387 H HOH 388 5 HOH HOH 388 H HOH 389 5 HOH HOH 389 H HOH 390 5 HOH HOH 390 H HOH 391 5 HOH HOH 391 H HOH 392 5 HOH HOH 392 H HOH 393 5 HOH HOH 393 H HOH 394 5 HOH HOH 394 H HOH 395 5 HOH HOH 395 H HOH 234 5 HOH HOH 234 L HOH 235 5 HOH HOH 235 L HOH 236 5 HOH HOH 236 L HOH 237 5 HOH HOH 237 L HOH 238 5 HOH HOH 238 L HOH 239 5 HOH HOH 239 L HOH 240 5 HOH HOH 240 L HOH 242 5 HOH HOH 242 L HOH 243 5 HOH HOH 243 L HOH 244 5 HOH HOH 244 L HOH 245 5 HOH HOH 245 L HOH 246 5 HOH HOH 246 L HOH 247 5 HOH HOH 247 L HOH 248 5 HOH HOH 248 L HOH 249 5 HOH HOH 249 L HOH 250 5 HOH HOH 250 L HOH 251 5 HOH HOH 251 L HOH 252 5 HOH HOH 252 L HOH 253 5 HOH HOH 253 L HOH 254 5 HOH HOH 254 L HOH 255 5 HOH HOH 255 L HOH 256 5 HOH HOH 256 L HOH 257 5 HOH HOH 257 L HOH 258 5 HOH HOH 258 L HOH 260 5 HOH HOH 260 L HOH 261 5 HOH HOH 261 L HOH 262 5 HOH HOH 262 L HOH 263 5 HOH HOH 263 L HOH 264 5 HOH HOH 264 L HOH 265 5 HOH HOH 265 L HOH 266 5 HOH HOH 266 L HOH 267 5 HOH HOH 267 L HOH 268 5 HOH HOH 268 L HOH 269 5 HOH HOH 269 L HOH 270 5 HOH HOH 270 L HOH 271 5 HOH HOH 271 L HOH 272 5 HOH HOH 272 L HOH 273 5 HOH HOH 273 L HOH 274 5 HOH HOH 274 L HOH 275 5 HOH HOH 275 L HOH 276 5 HOH HOH 276 L HOH 277 5 HOH HOH 277 L HOH 278 5 HOH HOH 278 L HOH 279 5 HOH HOH 279 L HOH 280 5 HOH HOH 280 L HOH 281 5 HOH HOH 281 L HOH 282 5 HOH HOH 282 L HOH 283 5 HOH HOH 283 L HOH 284 5 HOH HOH 284 L HOH 285 5 HOH HOH 285 L HOH 286 5 HOH HOH 286 L HOH 287 5 HOH HOH 287 L HOH 288 5 HOH HOH 288 L HOH 289 5 HOH HOH 289 L HOH 290 5 HOH HOH 290 L HOH 291 5 HOH HOH 291 L HOH 292 5 HOH HOH 292 L HOH 293 5 HOH HOH 293 L HOH 294 5 HOH HOH 294 L HOH 295 5 HOH HOH 295 L HOH 296 5 HOH HOH 296 L HOH 297 5 HOH HOH 297 L HOH 298 5 HOH HOH 298 L HOH 299 5 HOH HOH 299 L HOH 300 5 HOH HOH 300 L HOH 301 5 HOH HOH 301 L HOH 302 5 HOH HOH 302 L HOH 303 5 HOH HOH 303 L HOH 304 5 HOH HOH 304 L HOH 305 5 HOH HOH 305 L HOH 306 5 HOH HOH 306 L HOH 307 5 HOH HOH 307 L HOH 308 5 HOH HOH 308 L HOH 309 5 HOH HOH 309 L HOH 310 5 HOH HOH 310 L HOH 311 5 HOH HOH 311 L HOH 312 5 HOH HOH 312 L HOH 313 5 HOH HOH 313 L HOH 314 5 HOH HOH 314 L HOH 315 5 HOH HOH 315 L HOH 316 5 HOH HOH 316 L HOH 317 5 HOH HOH 317 L HOH 318 5 HOH HOH 318 L HOH 319 5 HOH HOH 319 L HOH 320 5 HOH HOH 320 L HOH 321 5 HOH HOH 321 L HOH 322 5 HOH HOH 322 L HOH 323 5 HOH HOH 323 L HOH 324 5 HOH HOH 324 L HOH 325 5 HOH HOH 325 L HOH 326 5 HOH HOH 326 L HOH 327 5 HOH HOH 327 L HOH 328 5 HOH HOH 328 L HOH 329 5 HOH HOH 329 L HOH 330 5 HOH HOH 330 L HOH 331 5 HOH HOH 331 L HOH 332 5 HOH HOH 332 L HOH 333 5 HOH HOH 333 L HOH 334 5 HOH HOH 334 L HOH 335 5 HOH HOH 335 L HOH 336 5 HOH HOH 336 L HOH 337 5 HOH HOH 337 L HOH 338 5 HOH HOH 338 L HOH 339 5 HOH HOH 339 L HOH 340 5 HOH HOH 340 L HOH 341 5 HOH HOH 341 L HOH 342 5 HOH HOH 342 L HOH 343 5 HOH HOH 343 L HOH 344 5 HOH HOH 344 L HOH 345 5 HOH HOH 345 L HOH 346 5 HOH HOH 346 L HOH 347 5 HOH HOH 347 L HOH 348 5 HOH HOH 348 L HOH 349 5 HOH HOH 349 L HOH 350 5 HOH HOH 350 L HOH 351 5 HOH HOH 351 L HOH 352 5 HOH HOH 352 L HOH 353 5 HOH HOH 353 L HOH 354 5 HOH HOH 354 L HOH 355 5 HOH HOH 355 L HOH 356 5 HOH HOH 356 L HOH 357 5 HOH HOH 357 L HOH 358 5 HOH HOH 358 L HOH 359 5 HOH HOH 359 L HOH 360 5 HOH HOH 360 L HOH 361 5 HOH HOH 361 L HOH 362 5 HOH HOH 362 L HOH 363 5 HOH HOH 363 L HOH 364 5 HOH HOH 364 L HOH 365 5 HOH HOH 365 L HOH 366 5 HOH HOH 366 L HOH 367 5 HOH HOH 367 L HOH 368 5 HOH HOH 368 L HOH 369 5 HOH HOH 369 L HOH 370 5 HOH HOH 370 L HOH 371 5 HOH HOH 371 L HOH 372 5 HOH HOH 372 L HOH 373 5 HOH HOH 373 L HOH 374 5 HOH HOH 374 L HOH 375 5 HOH HOH 375 L HOH 376 5 HOH HOH 376 L HOH 377 5 HOH HOH 377 L HOH 378 5 HOH HOH 378 L HOH 379 5 HOH HOH 379 L HOH 380 5 HOH HOH 380 L HOH 381 5 HOH HOH 381 L HOH 382 5 HOH HOH 382 L HOH 383 5 HOH HOH 383 L HOH 384 5 HOH HOH 384 L HOH 385 5 HOH HOH 385 L HOH 386 5 HOH HOH 386 L HOH 138 5 HOH HOH 138 P HOH 297 5 HOH HOH 297 P HOH 310 5 HOH HOH 310 P HOH 313 5 HOH HOH 313 P HOH 316 5 HOH HOH 316 P HOH 319 5 HOH HOH 319 P HOH 322 5 HOH HOH 322 P HOH 333 5 HOH HOH 333 P ASP 1 n 1 ASP 1 H VAL 2 n 2 VAL 2 H GLN 3 n 3 GLN 3 H LEU 4 n 4 LEU 4 H GLN 5 n 5 GLN 5 H GLU 6 n 6 GLU 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H PRO 9 n 9 PRO 9 H GLY 10 n 10 GLY 10 H LEU 11 n 11 LEU 11 H VAL 12 n 12 VAL 12 H LYS 13 n 13 LYS 13 H PRO 14 n 14 PRO 14 H SER 15 n 15 SER 15 H GLN 16 n 16 GLN 16 H SER 17 n 17 SER 17 H LEU 18 n 18 LEU 18 H SER 19 n 19 SER 19 H LEU 20 n 20 LEU 20 H THR 21 n 21 THR 21 H CYS 22 n 22 CYS 22 H THR 23 n 23 THR 23 H VAL 24 n 24 VAL 24 H THR 25 n 25 THR 25 H GLY 26 n 26 GLY 26 H TYR 27 n 27 TYR 27 H LEU 28 n 28 LEU 28 H ILE 29 n 29 ILE 29 H THR 30 n 30 THR 30 H THR 31 n 31 THR 31 H ASP 32 n 32 ASP 32 H TYR 33 n 33 TYR 33 H ALA 34 n 34 ALA 34 H TRP 35 n 35 TRP 35 H ASN 35 n 36 A ASN 35 H TRP 36 n 37 TRP 36 H ILE 37 n 38 ILE 37 H ARG 38 n 39 ARG 38 H GLN 39 n 40 GLN 39 H PHE 40 n 41 PHE 40 H PRO 41 n 42 PRO 41 H GLY 42 n 43 GLY 42 H ASN 43 n 44 ASN 43 H LYS 44 n 45 LYS 44 H LEU 45 n 46 LEU 45 H GLU 46 n 47 GLU 46 H TRP 47 n 48 TRP 47 H MET 48 n 49 MET 48 H GLY 49 n 50 GLY 49 H TYR 50 n 51 TYR 50 H ILE 51 n 52 ILE 51 H SER 52 n 53 SER 52 H TYR 53 n 54 TYR 53 H SER 54 n 55 SER 54 H GLY 55 n 56 GLY 55 H PHE 56 n 57 PHE 56 H THR 57 n 58 THR 57 H SER 58 n 59 SER 58 H TYR 59 n 60 TYR 59 H ASN 60 n 61 ASN 60 H PRO 61 n 62 PRO 61 H SER 62 n 63 SER 62 H LEU 63 n 64 LEU 63 H LYS 64 n 65 LYS 64 H SER 65 n 66 SER 65 H GLN 66 n 67 GLN 66 H ILE 67 n 68 ILE 67 H SER 68 n 69 SER 68 H ILE 69 n 70 ILE 69 H THR 70 n 71 THR 70 H ARG 71 n 72 ARG 71 H ASP 72 n 73 ASP 72 H THR 73 n 74 THR 73 H SER 74 n 75 SER 74 H LYS 75 n 76 LYS 75 H ASN 76 n 77 ASN 76 H GLN 77 n 78 GLN 77 H PHE 78 n 79 PHE 78 H PHE 79 n 80 PHE 79 H LEU 80 n 81 LEU 80 H GLN 81 n 82 GLN 81 H LEU 82 n 83 LEU 82 H ASN 82 n 84 A ASN 82 H SER 82 n 85 B SER 82 H VAL 82 n 86 C VAL 82 H THR 83 n 87 THR 83 H THR 84 n 88 THR 84 H GLU 85 n 89 GLU 85 H ASP 86 n 90 ASP 86 H THR 87 n 91 THR 87 H ALA 88 n 92 ALA 88 H THR 89 n 93 THR 89 H TYR 90 n 94 TYR 90 H TYR 91 n 95 TYR 91 H CYS 92 n 96 CYS 92 H ALA 93 n 97 ALA 93 H PHE 94 n 98 PHE 94 H GLY 95 n 99 GLY 95 H ASN 96 n 100 ASN 96 H TYR 97 n 101 TYR 97 H LEU 98 n 102 LEU 98 H PRO 99 n 103 PRO 99 H ALA 100 n 104 ALA 100 H TYR 101 n 105 TYR 101 H TRP 102 n 106 TRP 102 H GLY 103 n 107 GLY 103 H GLN 104 n 108 GLN 104 H GLY 105 n 109 GLY 105 H THR 106 n 110 THR 106 H LEU 107 n 111 LEU 107 H VAL 108 n 112 VAL 108 H THR 109 n 113 THR 109 H VAL 110 n 114 VAL 110 H SER 111 n 115 SER 111 H ALA 112 n 116 ALA 112 H ALA 113 n 117 ALA 113 H LYS 114 n 118 LYS 114 H THR 115 n 119 THR 115 H THR 116 n 120 THR 116 H ALA 117 n 121 ALA 117 H PRO 118 n 122 PRO 118 H SER 119 n 123 SER 119 H VAL 120 n 124 VAL 120 H TYR 121 n 125 TYR 121 H PRO 122 n 126 PRO 122 H LEU 123 n 127 LEU 123 H ALA 124 n 128 ALA 124 H PRO 125 n 129 PRO 125 H VAL 126 n 130 VAL 126 H CYS 127 n 131 CYS 127 H GLY 128 n 132 GLY 128 H n 133 129 H n 134 130 H n 135 131 H GLY 132 n 136 GLY 132 H SER 133 n 137 SER 133 H SER 134 n 138 SER 134 H VAL 135 n 139 VAL 135 H THR 136 n 140 THR 136 H LEU 137 n 141 LEU 137 H GLY 138 n 142 GLY 138 H CYS 139 n 143 CYS 139 H LEU 140 n 144 LEU 140 H VAL 141 n 145 VAL 141 H LYS 142 n 146 LYS 142 H GLY 143 n 147 GLY 143 H TYR 144 n 148 TYR 144 H PHE 145 n 149 PHE 145 H PRO 146 n 150 PRO 146 H GLU 147 n 151 GLU 147 H PRO 148 n 152 PRO 148 H VAL 149 n 153 VAL 149 H THR 150 n 154 THR 150 H LEU 151 n 155 LEU 151 H THR 152 n 156 THR 152 H TRP 153 n 157 TRP 153 H ASN 154 n 158 ASN 154 H SER 155 n 159 SER 155 H GLY 156 n 160 GLY 156 H SER 157 n 161 SER 157 H LEU 158 n 162 LEU 158 H SER 159 n 163 SER 159 H SER 160 n 164 SER 160 H GLY 161 n 165 GLY 161 H VAL 162 n 166 VAL 162 H HIS 163 n 167 HIS 163 H THR 164 n 168 THR 164 H PHE 165 n 169 PHE 165 H PRO 166 n 170 PRO 166 H ALA 167 n 171 ALA 167 H VAL 168 n 172 VAL 168 H LEU 169 n 173 LEU 169 H GLN 170 n 174 GLN 170 H SER 171 n 175 SER 171 H ASP 172 n 176 ASP 172 H LEU 173 n 177 LEU 173 H TYR 174 n 178 TYR 174 H THR 175 n 179 THR 175 H LEU 176 n 180 LEU 176 H SER 177 n 181 SER 177 H SER 178 n 182 SER 178 H SER 179 n 183 SER 179 H VAL 180 n 184 VAL 180 H THR 181 n 185 THR 181 H VAL 182 n 186 VAL 182 H THR 183 n 187 THR 183 H SER 184 n 188 SER 184 H SER 185 n 189 SER 185 H THR 186 n 190 THR 186 H TRP 187 n 191 TRP 187 H PRO 188 n 192 PRO 188 H SER 189 n 193 SER 189 H GLN 190 n 194 GLN 190 H SER 191 n 195 SER 191 H ILE 192 n 196 ILE 192 H THR 193 n 197 THR 193 H CYS 194 n 198 CYS 194 H ASN 195 n 199 ASN 195 H VAL 196 n 200 VAL 196 H ALA 197 n 201 ALA 197 H HIS 198 n 202 HIS 198 H PRO 199 n 203 PRO 199 H ALA 200 n 204 ALA 200 H SER 201 n 205 SER 201 H SER 202 n 206 SER 202 H THR 203 n 207 THR 203 H LYS 204 n 208 LYS 204 H VAL 205 n 209 VAL 205 H ASP 206 n 210 ASP 206 H LYS 207 n 211 LYS 207 H LYS 208 n 212 LYS 208 H ILE 209 n 213 ILE 209 H GLU 210 n 214 GLU 210 H PRO 211 n 215 PRO 211 H ARG 212 n 216 ARG 212 H GLY 213 n 217 GLY 213 H PRO 214 n 218 PRO 214 H THR 215 n 219 THR 215 H ILE 216 n 220 ILE 216 H n 221 217 H ASP 1 n 1 ASP 1 L VAL 2 n 2 VAL 2 L VAL 3 n 3 VAL 3 L MET 4 n 4 MET 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L THR 7 n 7 THR 7 L PRO 8 n 8 PRO 8 L LEU 9 n 9 LEU 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L SER 12 n 12 SER 12 L VAL 13 n 13 VAL 13 L THR 14 n 14 THR 14 L LEU 15 n 15 LEU 15 L GLY 16 n 16 GLY 16 L GLN 17 n 17 GLN 17 L PRO 18 n 18 PRO 18 L ALA 19 n 19 ALA 19 L SER 20 n 20 SER 20 L ILE 21 n 21 ILE 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L LYS 24 n 24 LYS 24 L SER 25 n 25 SER 25 L SER 26 n 26 SER 26 L GLN 27 n 27 GLN 27 L SER 28 n 28 SER 28 L LEU 29 n 29 LEU 29 L LEU 30 n 30 LEU 30 L ASP 31 n 31 ASP 31 L SER 32 n 32 SER 32 L ASP 33 n 33 ASP 33 L GLY 34 n 34 GLY 34 L LYS 35 n 35 LYS 35 L THR 36 n 36 THR 36 L TYR 37 n 37 TYR 37 L LEU 38 n 38 LEU 38 L ASN 39 n 39 ASN 39 L TRP 40 n 40 TRP 40 L LEU 41 n 41 LEU 41 L LEU 42 n 42 LEU 42 L GLN 43 n 43 GLN 43 L ARG 44 n 44 ARG 44 L PRO 45 n 45 PRO 45 L GLY 46 n 46 GLY 46 L GLN 47 n 47 GLN 47 L SER 48 n 48 SER 48 L PRO 49 n 49 PRO 49 L LYS 50 n 50 LYS 50 L ARG 51 n 51 ARG 51 L LEU 52 n 52 LEU 52 L ILE 53 n 53 ILE 53 L TYR 54 n 54 TYR 54 L LEU 55 n 55 LEU 55 L VAL 56 n 56 VAL 56 L SER 57 n 57 SER 57 L LYS 58 n 58 LYS 58 L LEU 59 n 59 LEU 59 L ALA 60 n 60 ALA 60 L SER 61 n 61 SER 61 L GLY 62 n 62 GLY 62 L VAL 63 n 63 VAL 63 L PRO 64 n 64 PRO 64 L ASP 65 n 65 ASP 65 L ARG 66 n 66 ARG 66 L PHE 67 n 67 PHE 67 L THR 68 n 68 THR 68 L GLY 69 n 69 GLY 69 L SER 70 n 70 SER 70 L GLY 71 n 71 GLY 71 L SER 72 n 72 SER 72 L GLY 73 n 73 GLY 73 L THR 74 n 74 THR 74 L ASP 75 n 75 ASP 75 L PHE 76 n 76 PHE 76 L THR 77 n 77 THR 77 L LEU 78 n 78 LEU 78 L LYS 79 n 79 LYS 79 L ILE 80 n 80 ILE 80 L ASN 81 n 81 ASN 81 L ARG 82 n 82 ARG 82 L VAL 83 n 83 VAL 83 L GLU 84 n 84 GLU 84 L ALA 85 n 85 ALA 85 L GLU 86 n 86 GLU 86 L ASP 87 n 87 ASP 87 L LEU 88 n 88 LEU 88 L GLY 89 n 89 GLY 89 L ILE 90 n 90 ILE 90 L TYR 91 n 91 TYR 91 L TYR 92 n 92 TYR 92 L CYS 93 n 93 CYS 93 L TRP 94 n 94 TRP 94 L GLN 95 n 95 GLN 95 L GLY 96 n 96 GLY 96 L THR 97 n 97 THR 97 L HIS 98 n 98 HIS 98 L PHE 99 n 99 PHE 99 L PRO 100 n 100 PRO 100 L TRP 101 n 101 TRP 101 L THR 102 n 102 THR 102 L PHE 103 n 103 PHE 103 L GLY 104 n 104 GLY 104 L GLY 105 n 105 GLY 105 L GLY 106 n 106 GLY 106 L THR 107 n 107 THR 107 L LYS 108 n 108 LYS 108 L LEU 109 n 109 LEU 109 L GLU 110 n 110 GLU 110 L ILE 111 n 111 ILE 111 L LYS 112 n 112 LYS 112 L ARG 113 n 113 ARG 113 L ALA 114 n 114 ALA 114 L ASP 115 n 115 ASP 115 L ALA 116 n 116 ALA 116 L ALA 117 n 117 ALA 117 L PRO 118 n 118 PRO 118 L THR 119 n 119 THR 119 L VAL 120 n 120 VAL 120 L SER 121 n 121 SER 121 L ILE 122 n 122 ILE 122 L PHE 123 n 123 PHE 123 L PRO 124 n 124 PRO 124 L PRO 125 n 125 PRO 125 L SER 126 n 126 SER 126 L SER 127 n 127 SER 127 L GLU 128 n 128 GLU 128 L GLN 129 n 129 GLN 129 L LEU 130 n 130 LEU 130 L THR 131 n 131 THR 131 L SER 132 n 132 SER 132 L GLY 133 n 133 GLY 133 L GLY 134 n 134 GLY 134 L ALA 135 n 135 ALA 135 L SER 136 n 136 SER 136 L VAL 137 n 137 VAL 137 L VAL 138 n 138 VAL 138 L CYS 139 n 139 CYS 139 L PHE 140 n 140 PHE 140 L LEU 141 n 141 LEU 141 L ASN 142 n 142 ASN 142 L ASN 143 n 143 ASN 143 L PHE 144 n 144 PHE 144 L TYR 145 n 145 TYR 145 L PRO 146 n 146 PRO 146 L LYS 147 n 147 LYS 147 L ASP 148 n 148 ASP 148 L ILE 149 n 149 ILE 149 L ASN 150 n 150 ASN 150 L VAL 151 n 151 VAL 151 L LYS 152 n 152 LYS 152 L TRP 153 n 153 TRP 153 L LYS 154 n 154 LYS 154 L ILE 155 n 155 ILE 155 L ASP 156 n 156 ASP 156 L GLY 157 n 157 GLY 157 L SER 158 n 158 SER 158 L GLU 159 n 159 GLU 159 L ARG 160 n 160 ARG 160 L GLN 161 n 161 GLN 161 L ASN 162 n 162 ASN 162 L GLY 163 n 163 GLY 163 L VAL 164 n 164 VAL 164 L LEU 165 n 165 LEU 165 L ASN 166 n 166 ASN 166 L SER 167 n 167 SER 167 L TRP 168 n 168 TRP 168 L THR 169 n 169 THR 169 L ASP 170 n 170 ASP 170 L GLN 171 n 171 GLN 171 L ASP 172 n 172 ASP 172 L SER 173 n 173 SER 173 L LYS 174 n 174 LYS 174 L ASP 175 n 175 ASP 175 L SER 176 n 176 SER 176 L THR 177 n 177 THR 177 L TYR 178 n 178 TYR 178 L SER 179 n 179 SER 179 L MET 180 n 180 MET 180 L SER 181 n 181 SER 181 L SER 182 n 182 SER 182 L THR 183 n 183 THR 183 L LEU 184 n 184 LEU 184 L THR 185 n 185 THR 185 L LEU 186 n 186 LEU 186 L THR 187 n 187 THR 187 L LYS 188 n 188 LYS 188 L ASP 189 n 189 ASP 189 L GLU 190 n 190 GLU 190 L TYR 191 n 191 TYR 191 L GLU 192 n 192 GLU 192 L ARG 193 n 193 ARG 193 L HIS 194 n 194 HIS 194 L ASN 195 n 195 ASN 195 L SER 196 n 196 SER 196 L TYR 197 n 197 TYR 197 L THR 198 n 198 THR 198 L CYS 199 n 199 CYS 199 L GLU 200 n 200 GLU 200 L ALA 201 n 201 ALA 201 L THR 202 n 202 THR 202 L HIS 203 n 203 HIS 203 L LYS 204 n 204 LYS 204 L n 205 205 L n 206 206 L n 207 207 L SER 208 n 208 SER 208 L PRO 209 n 209 PRO 209 L ILE 210 n 210 ILE 210 L VAL 211 n 211 VAL 211 L LYS 212 n 212 LYS 212 L SER 213 n 213 SER 213 L PHE 214 n 214 PHE 214 L ASN 215 n 215 ASN 215 L ARG 216 n 216 ARG 216 L ASN 217 n 217 ASN 217 L GLU 218 n 218 GLU 218 L CYS 219 n 219 CYS 219 L LEU 660 n 1 LEU 660 P LEU 661 n 2 LEU 661 P GLU 662 n 3 GLU 662 P LEU 663 n 4 LEU 663 P ASP 664 n 5 ASP 664 P LYS 665 n 6 LYS 665 P TRP 666 n 7 TRP 666 P ALA 667 n 8 ALA 667 P NH2 668 n 9 NH2 668 P 1.4640 -0.5831 -2.0358 0.9435 0.0680 2.1133 -0.1758 0.2695 -0.1441 0.4536 0.0109 0.1885 -0.2362 -0.5715 0.2159 0.3340 0.0663 -0.0174 0.3294 -0.0628 0.2085 refined 6.8970 -21.0727 3.8943 X-RAY DIFFRACTION 1.7552 0.1544 -1.3752 1.7150 0.8551 2.4446 -0.0877 0.1760 -0.1769 -0.0211 -0.0457 -0.0455 -0.0318 0.1306 0.1253 0.1866 0.0757 -0.0194 0.2225 -0.0281 0.1603 refined 14.1935 -19.9172 6.3434 X-RAY DIFFRACTION 2.9695 -1.7733 -1.8650 2.0270 1.9544 3.6864 0.1121 -0.1916 0.4271 -0.2699 0.0730 -0.0795 -0.2044 -0.0988 -0.0859 0.3545 -0.0338 0.0687 0.2664 -0.0010 0.3382 refined -10.8774 -15.9718 38.8010 X-RAY DIFFRACTION 1.7010 0.2218 -0.5834 1.9502 0.1116 3.8170 -0.0771 0.0758 -0.0143 -0.0552 0.0877 0.1727 0.2411 -0.5177 -0.0159 0.1588 -0.0017 -0.0393 0.2591 0.0351 0.1592 refined -7.6121 -18.1842 30.5780 X-RAY DIFFRACTION 2.6799 0.1339 -1.0719 1.0933 0.9517 2.4630 0.4534 -0.0570 0.4009 -0.2256 -0.0362 0.0137 -0.5937 0.0266 -0.4147 0.5041 -0.0474 0.1617 0.2124 -0.0085 0.2759 refined 18.6894 2.1866 12.3026 X-RAY DIFFRACTION 1.6452 0.1500 -1.7461 0.6355 -0.3906 3.3416 0.2205 -0.0276 0.2115 -0.0766 0.0793 0.0819 -0.2631 0.1191 -0.2693 0.2345 0.0040 -0.0061 0.1466 -0.0469 0.1799 refined 7.3563 -8.4860 27.3458 X-RAY DIFFRACTION 1.6940 0.0180 -1.8577 1.5019 1.7493 2.2713 0.0569 -0.4196 0.1974 -0.0329 0.1219 -0.0296 0.0404 0.4519 -0.1763 0.1353 0.0298 -0.0410 0.2736 -0.0191 0.1914 refined 4.5769 -11.7083 40.1609 X-RAY DIFFRACTION 0.6578 -0.8061 -0.7898 0.1273 0.4765 1.9841 -0.1801 -0.4046 0.0398 0.2527 0.2906 -0.0284 0.1878 0.7346 -0.0704 0.3182 0.0516 0.0070 0.4012 -0.0142 0.1814 refined -1.8486 -16.5386 51.3723 X-RAY DIFFRACTION 0.4364 -0.0973 0.1441 -0.0066 -0.1112 0.1656 -0.1500 0.3061 0.1169 -0.4850 0.4830 0.4176 -0.4887 -0.4830 -0.3300 0.5462 0.0721 0.0455 0.5343 0.0628 0.3300 refined 18.6053 -4.4647 -4.9447 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 CHAIN H AND RESID 1:32 X-RAY DIFFRACTION 2 CHAIN H AND RESID 33:121 X-RAY DIFFRACTION 3 CHAIN H AND RESID 122:139 X-RAY DIFFRACTION 4 CHAIN H AND RESID 140:220 X-RAY DIFFRACTION 5 CHAIN L AND RESID 1:82 X-RAY DIFFRACTION 6 CHAIN L AND RESID 83:141 X-RAY DIFFRACTION 7 CHAIN L AND RESID 142:188 X-RAY DIFFRACTION 8 CHAIN L AND RESID 189:219 X-RAY DIFFRACTION 9 CHAIN P AND RESID 659:668 author_and_software_defined_assembly PISA 3 trimeric 4990 -29 19650 L ASN 143 B ND2 ASN 143 1_555 H ZN 222 D ZN ZN 1_555 L HOH 268 H O HOH 1_555 77.9 L ASN 143 B ND2 ASN 143 1_555 H ZN 222 D ZN ZN 1_555 H HOH 244 G O HOH 1_555 144.6 L HOH 268 H O HOH 1_555 H ZN 222 D ZN ZN 1_555 H HOH 244 G O HOH 1_555 91.6 L ASN 143 B ND2 ASN 143 1_555 H ZN 222 D ZN ZN 1_555 H HIS 163 A NE2 HIS 167 1_555 90.1 L HOH 268 H O HOH 1_555 H ZN 222 D ZN ZN 1_555 H HIS 163 A NE2 HIS 167 1_555 82.6 H HOH 244 G O HOH 1_555 H ZN 222 D ZN ZN 1_555 H HIS 163 A NE2 HIS 167 1_555 122.4 H ASP 1 A OD2 ASP 1 1_555 H ZN 223 E ZN ZN 1_555 H HOH 288 G O HOH 1_555 91.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 H N GLN 5 A N GLN 5 H O THR 23 A O THR 23 L N THR 7 B N THR 7 L O SER 22 B O SER 22 L N ALA 19 B N ALA 19 L O ILE 80 B O ILE 80 L O LYS 79 B O LYS 79 L N THR 68 B N THR 68 L N LEU 11 B N LEU 11 L O LYS 108 B O LYS 108 L O LEU 109 B O LEU 109 L N GLY 89 B N GLY 89 L O ILE 90 B O ILE 90 L N GLN 43 B N GLN 43 L N LEU 42 B N LEU 42 L O LYS 50 B O LYS 50 L N TYR 54 B N TYR 54 L O LYS 58 B O LYS 58 L N LEU 11 B N LEU 11 L O LYS 108 B O LYS 108 L O LEU 109 B O LEU 109 L N GLY 89 B N GLY 89 L N GLN 95 B N GLN 95 L O THR 102 B O THR 102 L N SER 121 B N SER 121 L O PHE 140 B O PHE 140 L N ALA 135 B N ALA 135 L O LEU 186 B O LEU 186 L O SER 181 B O SER 181 L N SER 167 B N SER 167 L O SER 158 B O SER 158 L N ILE 155 B N ILE 155 L N ASN 150 B N ASN 150 L O THR 202 B O THR 202 L N TYR 197 B N TYR 197 L O PHE 214 B O PHE 214 1 H ASP 129 A ASP 133 1 Y 1 H THR 130 A THR 134 1 Y 1 H THR 131 A THR 135 1 Y 1 H LYS 217 A LYS 221 1 Y 1 L THR 205 B THR 205 1 Y 1 L SER 206 B SER 206 1 Y 1 L THR 207 B THR 207 1 Y 1 H SER 15 80.30 -17.93 1 H TYR 27 -171.19 136.39 1 H TYR 33 82.08 171.64 1 H ASN 43 91.58 -0.87 1 H SER 155 56.92 18.60 1 L VAL 56 72.47 -53.48 41.75 7.70800 0.00000 5.83400 0.71100 -0.00000 -8.41900 0.215 0.177 0.180 1.99 27.10 1916 25977 7.380 92.0 1.00 1.00 1.200 1 0.050 MOLECULAR REPLACEMENT 0.90 1.11 ML FLAT BULK SOLVENT MODEL 50.67 0.32 1.99 27.10 331 3736 3 0 3402 0.004 3491 0.768 4756 15.031 1215 0.051 542 0.003 598 0.3110 0.2230 2.0380 89 1125 60.00 0.2580 0.1990 2.0930 123 1547 84.00 0.2690 0.1960 2.1550 127 1678 90.00 0.2570 0.2040 2.2240 142 1703 92.00 0.3140 0.2030 2.3040 133 1721 93.00 0.2480 0.1970 2.3960 145 1773 95.00 0.2930 0.2010 2.5050 146 1769 95.00 0.2530 0.2050 2.6370 134 1771 95.00 0.2530 0.2020 2.8020 141 1801 96.00 0.2460 0.1970 3.0180 147 1839 98.00 0.1900 0.1710 3.3210 147 1819 98.00 0.2190 0.1540 3.8010 146 1825 98.00 0.1560 0.1380 4.7840 147 1838 98.00 0.1800 0.1730 27.0980 149 1852 96.00 29.30 1.980 50.000 3LEY 26922 5.000 0.08100 1 31.5000 96.7 1.98 2.05 5.200 0.34200 86.9 refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.005 data reduction HKL-2000 data scaling HKL-2000 phasing PHASER 6a7 Antibody Heavy Chain, 6a7 Antibody Light Chain, Envelope glycoprotein gp41 2F5 Epitope scaffold elicited anti-HIV-1 monoclonal antibody 6a7 in complex with HIV-1 GP41 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 5 N N 5 N N 5 N N L GLU 84 B GLU 84 HELX_P L LEU 88 B LEU 88 5 4 5 L SER 126 B SER 126 HELX_P L SER 132 B SER 132 1 5 7 L LYS 188 B LYS 188 HELX_P L GLU 192 B GLU 192 1 6 5 L ASN 217 B ASN 217 HELX_P L CYS 219 B CYS 219 5 7 3 disulf 2.060 H CYS 22 A SG CYS 22 1_555 H CYS 92 A SG CYS 96 1_555 disulf 2.034 H CYS 139 A SG CYS 143 1_555 H CYS 194 A SG CYS 198 1_555 disulf 2.038 L CYS 23 B SG CYS 23 1_555 L CYS 93 B SG CYS 93 1_555 disulf 2.028 L CYS 139 B SG CYS 139 1_555 L CYS 199 B SG CYS 199 1_555 metalc 2.321 L ASN 143 B ND2 ASN 143 1_555 H ZN 222 D ZN ZN 1_555 metalc 2.542 L HIS 194 B NE2 HIS 194 1_555 L ZN 233 F ZN ZN 1_555 metalc 2.586 H ASP 1 A OD2 ASP 1 1_555 H ZN 223 E ZN ZN 1_555 metalc 2.427 H ZN 223 E ZN ZN 1_555 H HOH 288 G O HOH 1_555 metalc 2.484 H ZN 222 D ZN ZN 1_555 L HOH 268 H O HOH 1_555 metalc 2.509 H ZN 222 D ZN ZN 1_555 H HOH 244 G O HOH 1_555 metalc 2.213 H HIS 163 A NE2 HIS 167 1_555 H ZN 222 D ZN ZN 1_555 IMMUNE SYSTEM HIV-1, GP-41, MONOCLONAL ANTIBODY, 2F5, SCAFFOLD, EPITOPE, TRANSPLANT, GRAFT, RE-ELCITATION, Envelope protein, IMMUNE SYSTEM, VACCINE DESIGN H ASN 96 A ASN 100 1 H TYR 97 A TYR 101 1.79 H PHE 145 A PHE 149 1 H PRO 146 A PRO 150 -1.85 H GLU 147 A GLU 151 1 H PRO 148 A PRO 152 -3.77 H TRP 187 A TRP 191 1 H PRO 188 A PRO 192 7.76 L THR 7 B THR 7 1 L PRO 8 B PRO 8 -4.16 L PHE 99 B PHE 99 1 L PRO 100 B PRO 100 3.28 L TYR 145 B TYR 145 1 L PRO 146 B PRO 146 0.32 3LEY PDB 1 1 3LEY DVQLQESGPGLVKPSQSLSLTCTVTGYLITTDYAWNWIRQFPGNKLEWMGYISYSGFTSYNPSLKSQISITRDTSKNQFF LQLNSVTTEDTATYYCAFGNYLPAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIK 3LEY PDB 2 1 3LEY DVVMTQTPLSLSVTLGQPASISCKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSKLASGVPDRFTGSGSGTDFTLKI NRVEAEDLGIYYCWQGTHFPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC Q9IJQ0_9HIV1 UNP 3 100 Q9IJQ0 LLELDKWA(NH2) 1 221 3LEY 1 217 3LEY H 1 1 221 1 219 3LEY 1 219 3LEY L 2 1 219 100 108 3LEY 660 668 Q9IJQ0 P 3 1 9 4 6 4 4 6 4 4 4 anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel H GLN 3 A GLN 3 H SER 7 A SER 7 H LEU 18 A LEU 18 H THR 25 A THR 25 H LEU 11 A LEU 11 H VAL 12 A VAL 12 H LEU 11 A LEU 11 H VAL 12 A VAL 12 L MET 4 B MET 4 L THR 7 B THR 7 L ALA 19 B ALA 19 L SER 25 B SER 25 L ASP 75 B ASP 75 L ILE 80 B ILE 80 L PHE 67 B PHE 67 L SER 72 B SER 72 L SER 10 B SER 10 L THR 14 B THR 14 L THR 107 B THR 107 L LYS 112 B LYS 112 L GLY 89 B GLY 89 L GLN 95 B GLN 95 L LEU 38 B LEU 38 L GLN 43 B GLN 43 L LYS 50 B LYS 50 L TYR 54 B TYR 54 L LYS 58 B LYS 58 L LEU 59 B LEU 59 L SER 10 B SER 10 L THR 14 B THR 14 L THR 107 B THR 107 L LYS 112 B LYS 112 L GLY 89 B GLY 89 L GLN 95 B GLN 95 L THR 102 B THR 102 L PHE 103 B PHE 103 L THR 119 B THR 119 L PHE 123 B PHE 123 L GLY 134 B GLY 134 L PHE 144 B PHE 144 L TYR 178 B TYR 178 L THR 187 B THR 187 L VAL 164 B VAL 164 L TRP 168 B TRP 168 L SER 158 B SER 158 L GLU 159 B GLU 159 L ILE 149 B ILE 149 L ILE 155 B ILE 155 L SER 196 B SER 196 L HIS 203 B HIS 203 L ILE 210 B ILE 210 L ASN 215 B ASN 215 BINDING SITE FOR RESIDUE ZN H 222 Software 4 BINDING SITE FOR RESIDUE ZN H 223 Software 5 BINDING SITE FOR RESIDUE ZN L 233 Software 3 H HIS 163 A HIS 167 4 1_555 H HOH 244 G HOH 4 1_555 L ASN 143 B ASN 143 4 1_555 L HOH 268 H HOH 4 1_555 H ASP 1 A ASP 1 5 1_555 H HOH 275 G HOH 5 1_555 H HOH 288 G HOH 5 1_555 L HIS 98 B HIS 98 5 1_455 L HOH 321 H HOH 5 1_455 L GLU 190 B GLU 190 3 1_555 L HIS 194 B HIS 194 3 1_555 L HOH 290 H HOH 3 1_555 4 P 1 21 1