0.027587
0.000000
0.003421
0.000000
0.012475
0.000000
0.000000
0.000000
0.013968
0.00000
0.00000
0.00000
Ofek, G.
Guenaga, F.J.
Schief, W.R.
Skinner, J.
Baker, D.
Wyatt, R.
Kwong, P.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
97.07
90.00
36.249
80.160
72.139
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
107
17880
17887
10.1073/pnas.1004728107
20876137
Elicitation of structure-specific antibodies by epitope scaffolds.
2010
100
1
IMAGE PLATE
2009-04-02
MAR scanner 300 mm plate
SI (220)
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
22-BM
APS
1.000
SYNCHROTRON
APS BEAMLINE 22-BM
23891.727
6a7 Antibody Heavy Chain
1
nat
polymer
24198.973
6a7 Antibody Light Chain
1
nat
polymer
986.165
Envelope glycoprotein gp41
1
syn
polymer
65.409
ZINC ION
3
syn
non-polymer
18.015
water
331
nat
water
no
no
DVQLQESGPGLVKPSQSLSLTCTVTGYLITTDYAWNWIRQFPGNKLEWMGYISYSGFTSYNPSLKSQISITRDTSKNQFF
LQLNSVTTEDTATYYCAFGNYLPAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG
SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIK
DVQLQESGPGLVKPSQSLSLTCTVTGYLITTDYAWNWIRQFPGNKLEWMGYISYSGFTSYNPSLKSQISITRDTSKNQFF
LQLNSVTTEDTATYYCAFGNYLPAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG
SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIK
H
polypeptide(L)
no
no
DVVMTQTPLSLSVTLGQPASISCKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSKLASGVPDRFTGSGSGTDFTLKI
NRVEAEDLGIYYCWQGTHFPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
DVVMTQTPLSLSVTLGQPASISCKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSKLASGVPDRFTGSGSGTDFTLKI
NRVEAEDLGIYYCWQGTHFPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
L
polypeptide(L)
no
yes
LLELDKWA(NH2)
LLELDKWAX
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
hybridoma
myeloma cell line FO
10090
Mus musculus
BALB/c
mouse
sample
hybridoma
myeloma cell line FO
10090
Mus musculus
BALB/c
1
2.13
42.27
VAPOR DIFFUSION, HANGING DROP
4.5
31.5 % PEG 1000, 0.2 M Zn(CH3COO)2, 0.1 M CH3COONA PH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
repository
Initial release
Version format compliance
1
0
2010-09-29
1
1
2011-07-13
2F5 Epitope scaffold ES2
HIV-1 ANTIBODY 2F5 IN COMPLEX WITH EPITOPE SCAFFOLD ES2
2F5 Epitope scaffold elicited anti-HIV-1 monoclonal antibody 11F10 in complex with HIV-1 GP41
Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 17mer
RCSB
Y
RCSB
2010-01-15
REL
REL
ZN
ZINC ION
HOH
water
HIV-1 gp41 peptide
11676
Human immunodeficiency virus 1
sample
ZN
222
4
ZN
ZN
222
H
ZN
223
4
ZN
ZN
223
H
ZN
233
4
ZN
ZN
233
L
HOH
224
5
HOH
HOH
224
H
HOH
225
5
HOH
HOH
225
H
HOH
226
5
HOH
HOH
226
H
HOH
227
5
HOH
HOH
227
H
HOH
228
5
HOH
HOH
228
H
HOH
229
5
HOH
HOH
229
H
HOH
230
5
HOH
HOH
230
H
HOH
231
5
HOH
HOH
231
H
HOH
232
5
HOH
HOH
232
H
HOH
233
5
HOH
HOH
233
H
HOH
234
5
HOH
HOH
234
H
HOH
235
5
HOH
HOH
235
H
HOH
236
5
HOH
HOH
236
H
HOH
237
5
HOH
HOH
237
H
HOH
238
5
HOH
HOH
238
H
HOH
239
5
HOH
HOH
239
H
HOH
240
5
HOH
HOH
240
H
HOH
241
5
HOH
HOH
241
H
HOH
242
5
HOH
HOH
242
H
HOH
243
5
HOH
HOH
243
H
HOH
244
5
HOH
HOH
244
H
HOH
245
5
HOH
HOH
245
H
HOH
246
5
HOH
HOH
246
H
HOH
247
5
HOH
HOH
247
H
HOH
248
5
HOH
HOH
248
H
HOH
249
5
HOH
HOH
249
H
HOH
250
5
HOH
HOH
250
H
HOH
251
5
HOH
HOH
251
H
HOH
252
5
HOH
HOH
252
H
HOH
253
5
HOH
HOH
253
H
HOH
254
5
HOH
HOH
254
H
HOH
255
5
HOH
HOH
255
H
HOH
256
5
HOH
HOH
256
H
HOH
257
5
HOH
HOH
257
H
HOH
258
5
HOH
HOH
258
H
HOH
259
5
HOH
HOH
259
H
HOH
260
5
HOH
HOH
260
H
HOH
261
5
HOH
HOH
261
H
HOH
262
5
HOH
HOH
262
H
HOH
263
5
HOH
HOH
263
H
HOH
264
5
HOH
HOH
264
H
HOH
265
5
HOH
HOH
265
H
HOH
266
5
HOH
HOH
266
H
HOH
267
5
HOH
HOH
267
H
HOH
268
5
HOH
HOH
268
H
HOH
269
5
HOH
HOH
269
H
HOH
270
5
HOH
HOH
270
H
HOH
271
5
HOH
HOH
271
H
HOH
272
5
HOH
HOH
272
H
HOH
273
5
HOH
HOH
273
H
HOH
274
5
HOH
HOH
274
H
HOH
275
5
HOH
HOH
275
H
HOH
276
5
HOH
HOH
276
H
HOH
277
5
HOH
HOH
277
H
HOH
278
5
HOH
HOH
278
H
HOH
279
5
HOH
HOH
279
H
HOH
280
5
HOH
HOH
280
H
HOH
281
5
HOH
HOH
281
H
HOH
282
5
HOH
HOH
282
H
HOH
283
5
HOH
HOH
283
H
HOH
284
5
HOH
HOH
284
H
HOH
285
5
HOH
HOH
285
H
HOH
286
5
HOH
HOH
286
H
HOH
287
5
HOH
HOH
287
H
HOH
288
5
HOH
HOH
288
H
HOH
289
5
HOH
HOH
289
H
HOH
290
5
HOH
HOH
290
H
HOH
291
5
HOH
HOH
291
H
HOH
292
5
HOH
HOH
292
H
HOH
293
5
HOH
HOH
293
H
HOH
294
5
HOH
HOH
294
H
HOH
295
5
HOH
HOH
295
H
HOH
296
5
HOH
HOH
296
H
HOH
297
5
HOH
HOH
297
H
HOH
298
5
HOH
HOH
298
H
HOH
299
5
HOH
HOH
299
H
HOH
300
5
HOH
HOH
300
H
HOH
301
5
HOH
HOH
301
H
HOH
302
5
HOH
HOH
302
H
HOH
303
5
HOH
HOH
303
H
HOH
304
5
HOH
HOH
304
H
HOH
305
5
HOH
HOH
305
H
HOH
306
5
HOH
HOH
306
H
HOH
307
5
HOH
HOH
307
H
HOH
308
5
HOH
HOH
308
H
HOH
309
5
HOH
HOH
309
H
HOH
310
5
HOH
HOH
310
H
HOH
311
5
HOH
HOH
311
H
HOH
312
5
HOH
HOH
312
H
HOH
313
5
HOH
HOH
313
H
HOH
314
5
HOH
HOH
314
H
HOH
315
5
HOH
HOH
315
H
HOH
316
5
HOH
HOH
316
H
HOH
317
5
HOH
HOH
317
H
HOH
318
5
HOH
HOH
318
H
HOH
319
5
HOH
HOH
319
H
HOH
320
5
HOH
HOH
320
H
HOH
321
5
HOH
HOH
321
H
HOH
322
5
HOH
HOH
322
H
HOH
323
5
HOH
HOH
323
H
HOH
324
5
HOH
HOH
324
H
HOH
325
5
HOH
HOH
325
H
HOH
326
5
HOH
HOH
326
H
HOH
327
5
HOH
HOH
327
H
HOH
328
5
HOH
HOH
328
H
HOH
329
5
HOH
HOH
329
H
HOH
330
5
HOH
HOH
330
H
HOH
331
5
HOH
HOH
331
H
HOH
332
5
HOH
HOH
332
H
HOH
333
5
HOH
HOH
333
H
HOH
334
5
HOH
HOH
334
H
HOH
335
5
HOH
HOH
335
H
HOH
336
5
HOH
HOH
336
H
HOH
337
5
HOH
HOH
337
H
HOH
338
5
HOH
HOH
338
H
HOH
339
5
HOH
HOH
339
H
HOH
340
5
HOH
HOH
340
H
HOH
341
5
HOH
HOH
341
H
HOH
342
5
HOH
HOH
342
H
HOH
343
5
HOH
HOH
343
H
HOH
344
5
HOH
HOH
344
H
HOH
345
5
HOH
HOH
345
H
HOH
346
5
HOH
HOH
346
H
HOH
347
5
HOH
HOH
347
H
HOH
348
5
HOH
HOH
348
H
HOH
349
5
HOH
HOH
349
H
HOH
350
5
HOH
HOH
350
H
HOH
351
5
HOH
HOH
351
H
HOH
352
5
HOH
HOH
352
H
HOH
353
5
HOH
HOH
353
H
HOH
354
5
HOH
HOH
354
H
HOH
355
5
HOH
HOH
355
H
HOH
356
5
HOH
HOH
356
H
HOH
357
5
HOH
HOH
357
H
HOH
358
5
HOH
HOH
358
H
HOH
359
5
HOH
HOH
359
H
HOH
360
5
HOH
HOH
360
H
HOH
361
5
HOH
HOH
361
H
HOH
362
5
HOH
HOH
362
H
HOH
363
5
HOH
HOH
363
H
HOH
364
5
HOH
HOH
364
H
HOH
365
5
HOH
HOH
365
H
HOH
366
5
HOH
HOH
366
H
HOH
367
5
HOH
HOH
367
H
HOH
368
5
HOH
HOH
368
H
HOH
369
5
HOH
HOH
369
H
HOH
370
5
HOH
HOH
370
H
HOH
371
5
HOH
HOH
371
H
HOH
372
5
HOH
HOH
372
H
HOH
373
5
HOH
HOH
373
H
HOH
374
5
HOH
HOH
374
H
HOH
375
5
HOH
HOH
375
H
HOH
376
5
HOH
HOH
376
H
HOH
377
5
HOH
HOH
377
H
HOH
378
5
HOH
HOH
378
H
HOH
379
5
HOH
HOH
379
H
HOH
380
5
HOH
HOH
380
H
HOH
381
5
HOH
HOH
381
H
HOH
382
5
HOH
HOH
382
H
HOH
383
5
HOH
HOH
383
H
HOH
384
5
HOH
HOH
384
H
HOH
385
5
HOH
HOH
385
H
HOH
386
5
HOH
HOH
386
H
HOH
387
5
HOH
HOH
387
H
HOH
388
5
HOH
HOH
388
H
HOH
389
5
HOH
HOH
389
H
HOH
390
5
HOH
HOH
390
H
HOH
391
5
HOH
HOH
391
H
HOH
392
5
HOH
HOH
392
H
HOH
393
5
HOH
HOH
393
H
HOH
394
5
HOH
HOH
394
H
HOH
395
5
HOH
HOH
395
H
HOH
234
5
HOH
HOH
234
L
HOH
235
5
HOH
HOH
235
L
HOH
236
5
HOH
HOH
236
L
HOH
237
5
HOH
HOH
237
L
HOH
238
5
HOH
HOH
238
L
HOH
239
5
HOH
HOH
239
L
HOH
240
5
HOH
HOH
240
L
HOH
242
5
HOH
HOH
242
L
HOH
243
5
HOH
HOH
243
L
HOH
244
5
HOH
HOH
244
L
HOH
245
5
HOH
HOH
245
L
HOH
246
5
HOH
HOH
246
L
HOH
247
5
HOH
HOH
247
L
HOH
248
5
HOH
HOH
248
L
HOH
249
5
HOH
HOH
249
L
HOH
250
5
HOH
HOH
250
L
HOH
251
5
HOH
HOH
251
L
HOH
252
5
HOH
HOH
252
L
HOH
253
5
HOH
HOH
253
L
HOH
254
5
HOH
HOH
254
L
HOH
255
5
HOH
HOH
255
L
HOH
256
5
HOH
HOH
256
L
HOH
257
5
HOH
HOH
257
L
HOH
258
5
HOH
HOH
258
L
HOH
260
5
HOH
HOH
260
L
HOH
261
5
HOH
HOH
261
L
HOH
262
5
HOH
HOH
262
L
HOH
263
5
HOH
HOH
263
L
HOH
264
5
HOH
HOH
264
L
HOH
265
5
HOH
HOH
265
L
HOH
266
5
HOH
HOH
266
L
HOH
267
5
HOH
HOH
267
L
HOH
268
5
HOH
HOH
268
L
HOH
269
5
HOH
HOH
269
L
HOH
270
5
HOH
HOH
270
L
HOH
271
5
HOH
HOH
271
L
HOH
272
5
HOH
HOH
272
L
HOH
273
5
HOH
HOH
273
L
HOH
274
5
HOH
HOH
274
L
HOH
275
5
HOH
HOH
275
L
HOH
276
5
HOH
HOH
276
L
HOH
277
5
HOH
HOH
277
L
HOH
278
5
HOH
HOH
278
L
HOH
279
5
HOH
HOH
279
L
HOH
280
5
HOH
HOH
280
L
HOH
281
5
HOH
HOH
281
L
HOH
282
5
HOH
HOH
282
L
HOH
283
5
HOH
HOH
283
L
HOH
284
5
HOH
HOH
284
L
HOH
285
5
HOH
HOH
285
L
HOH
286
5
HOH
HOH
286
L
HOH
287
5
HOH
HOH
287
L
HOH
288
5
HOH
HOH
288
L
HOH
289
5
HOH
HOH
289
L
HOH
290
5
HOH
HOH
290
L
HOH
291
5
HOH
HOH
291
L
HOH
292
5
HOH
HOH
292
L
HOH
293
5
HOH
HOH
293
L
HOH
294
5
HOH
HOH
294
L
HOH
295
5
HOH
HOH
295
L
HOH
296
5
HOH
HOH
296
L
HOH
297
5
HOH
HOH
297
L
HOH
298
5
HOH
HOH
298
L
HOH
299
5
HOH
HOH
299
L
HOH
300
5
HOH
HOH
300
L
HOH
301
5
HOH
HOH
301
L
HOH
302
5
HOH
HOH
302
L
HOH
303
5
HOH
HOH
303
L
HOH
304
5
HOH
HOH
304
L
HOH
305
5
HOH
HOH
305
L
HOH
306
5
HOH
HOH
306
L
HOH
307
5
HOH
HOH
307
L
HOH
308
5
HOH
HOH
308
L
HOH
309
5
HOH
HOH
309
L
HOH
310
5
HOH
HOH
310
L
HOH
311
5
HOH
HOH
311
L
HOH
312
5
HOH
HOH
312
L
HOH
313
5
HOH
HOH
313
L
HOH
314
5
HOH
HOH
314
L
HOH
315
5
HOH
HOH
315
L
HOH
316
5
HOH
HOH
316
L
HOH
317
5
HOH
HOH
317
L
HOH
318
5
HOH
HOH
318
L
HOH
319
5
HOH
HOH
319
L
HOH
320
5
HOH
HOH
320
L
HOH
321
5
HOH
HOH
321
L
HOH
322
5
HOH
HOH
322
L
HOH
323
5
HOH
HOH
323
L
HOH
324
5
HOH
HOH
324
L
HOH
325
5
HOH
HOH
325
L
HOH
326
5
HOH
HOH
326
L
HOH
327
5
HOH
HOH
327
L
HOH
328
5
HOH
HOH
328
L
HOH
329
5
HOH
HOH
329
L
HOH
330
5
HOH
HOH
330
L
HOH
331
5
HOH
HOH
331
L
HOH
332
5
HOH
HOH
332
L
HOH
333
5
HOH
HOH
333
L
HOH
334
5
HOH
HOH
334
L
HOH
335
5
HOH
HOH
335
L
HOH
336
5
HOH
HOH
336
L
HOH
337
5
HOH
HOH
337
L
HOH
338
5
HOH
HOH
338
L
HOH
339
5
HOH
HOH
339
L
HOH
340
5
HOH
HOH
340
L
HOH
341
5
HOH
HOH
341
L
HOH
342
5
HOH
HOH
342
L
HOH
343
5
HOH
HOH
343
L
HOH
344
5
HOH
HOH
344
L
HOH
345
5
HOH
HOH
345
L
HOH
346
5
HOH
HOH
346
L
HOH
347
5
HOH
HOH
347
L
HOH
348
5
HOH
HOH
348
L
HOH
349
5
HOH
HOH
349
L
HOH
350
5
HOH
HOH
350
L
HOH
351
5
HOH
HOH
351
L
HOH
352
5
HOH
HOH
352
L
HOH
353
5
HOH
HOH
353
L
HOH
354
5
HOH
HOH
354
L
HOH
355
5
HOH
HOH
355
L
HOH
356
5
HOH
HOH
356
L
HOH
357
5
HOH
HOH
357
L
HOH
358
5
HOH
HOH
358
L
HOH
359
5
HOH
HOH
359
L
HOH
360
5
HOH
HOH
360
L
HOH
361
5
HOH
HOH
361
L
HOH
362
5
HOH
HOH
362
L
HOH
363
5
HOH
HOH
363
L
HOH
364
5
HOH
HOH
364
L
HOH
365
5
HOH
HOH
365
L
HOH
366
5
HOH
HOH
366
L
HOH
367
5
HOH
HOH
367
L
HOH
368
5
HOH
HOH
368
L
HOH
369
5
HOH
HOH
369
L
HOH
370
5
HOH
HOH
370
L
HOH
371
5
HOH
HOH
371
L
HOH
372
5
HOH
HOH
372
L
HOH
373
5
HOH
HOH
373
L
HOH
374
5
HOH
HOH
374
L
HOH
375
5
HOH
HOH
375
L
HOH
376
5
HOH
HOH
376
L
HOH
377
5
HOH
HOH
377
L
HOH
378
5
HOH
HOH
378
L
HOH
379
5
HOH
HOH
379
L
HOH
380
5
HOH
HOH
380
L
HOH
381
5
HOH
HOH
381
L
HOH
382
5
HOH
HOH
382
L
HOH
383
5
HOH
HOH
383
L
HOH
384
5
HOH
HOH
384
L
HOH
385
5
HOH
HOH
385
L
HOH
386
5
HOH
HOH
386
L
HOH
138
5
HOH
HOH
138
P
HOH
297
5
HOH
HOH
297
P
HOH
310
5
HOH
HOH
310
P
HOH
313
5
HOH
HOH
313
P
HOH
316
5
HOH
HOH
316
P
HOH
319
5
HOH
HOH
319
P
HOH
322
5
HOH
HOH
322
P
HOH
333
5
HOH
HOH
333
P
ASP
1
n
1
ASP
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
GLN
5
n
5
GLN
5
H
GLU
6
n
6
GLU
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
PRO
9
n
9
PRO
9
H
GLY
10
n
10
GLY
10
H
LEU
11
n
11
LEU
11
H
VAL
12
n
12
VAL
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
SER
15
n
15
SER
15
H
GLN
16
n
16
GLN
16
H
SER
17
n
17
SER
17
H
LEU
18
n
18
LEU
18
H
SER
19
n
19
SER
19
H
LEU
20
n
20
LEU
20
H
THR
21
n
21
THR
21
H
CYS
22
n
22
CYS
22
H
THR
23
n
23
THR
23
H
VAL
24
n
24
VAL
24
H
THR
25
n
25
THR
25
H
GLY
26
n
26
GLY
26
H
TYR
27
n
27
TYR
27
H
LEU
28
n
28
LEU
28
H
ILE
29
n
29
ILE
29
H
THR
30
n
30
THR
30
H
THR
31
n
31
THR
31
H
ASP
32
n
32
ASP
32
H
TYR
33
n
33
TYR
33
H
ALA
34
n
34
ALA
34
H
TRP
35
n
35
TRP
35
H
ASN
35
n
36
A
ASN
35
H
TRP
36
n
37
TRP
36
H
ILE
37
n
38
ILE
37
H
ARG
38
n
39
ARG
38
H
GLN
39
n
40
GLN
39
H
PHE
40
n
41
PHE
40
H
PRO
41
n
42
PRO
41
H
GLY
42
n
43
GLY
42
H
ASN
43
n
44
ASN
43
H
LYS
44
n
45
LYS
44
H
LEU
45
n
46
LEU
45
H
GLU
46
n
47
GLU
46
H
TRP
47
n
48
TRP
47
H
MET
48
n
49
MET
48
H
GLY
49
n
50
GLY
49
H
TYR
50
n
51
TYR
50
H
ILE
51
n
52
ILE
51
H
SER
52
n
53
SER
52
H
TYR
53
n
54
TYR
53
H
SER
54
n
55
SER
54
H
GLY
55
n
56
GLY
55
H
PHE
56
n
57
PHE
56
H
THR
57
n
58
THR
57
H
SER
58
n
59
SER
58
H
TYR
59
n
60
TYR
59
H
ASN
60
n
61
ASN
60
H
PRO
61
n
62
PRO
61
H
SER
62
n
63
SER
62
H
LEU
63
n
64
LEU
63
H
LYS
64
n
65
LYS
64
H
SER
65
n
66
SER
65
H
GLN
66
n
67
GLN
66
H
ILE
67
n
68
ILE
67
H
SER
68
n
69
SER
68
H
ILE
69
n
70
ILE
69
H
THR
70
n
71
THR
70
H
ARG
71
n
72
ARG
71
H
ASP
72
n
73
ASP
72
H
THR
73
n
74
THR
73
H
SER
74
n
75
SER
74
H
LYS
75
n
76
LYS
75
H
ASN
76
n
77
ASN
76
H
GLN
77
n
78
GLN
77
H
PHE
78
n
79
PHE
78
H
PHE
79
n
80
PHE
79
H
LEU
80
n
81
LEU
80
H
GLN
81
n
82
GLN
81
H
LEU
82
n
83
LEU
82
H
ASN
82
n
84
A
ASN
82
H
SER
82
n
85
B
SER
82
H
VAL
82
n
86
C
VAL
82
H
THR
83
n
87
THR
83
H
THR
84
n
88
THR
84
H
GLU
85
n
89
GLU
85
H
ASP
86
n
90
ASP
86
H
THR
87
n
91
THR
87
H
ALA
88
n
92
ALA
88
H
THR
89
n
93
THR
89
H
TYR
90
n
94
TYR
90
H
TYR
91
n
95
TYR
91
H
CYS
92
n
96
CYS
92
H
ALA
93
n
97
ALA
93
H
PHE
94
n
98
PHE
94
H
GLY
95
n
99
GLY
95
H
ASN
96
n
100
ASN
96
H
TYR
97
n
101
TYR
97
H
LEU
98
n
102
LEU
98
H
PRO
99
n
103
PRO
99
H
ALA
100
n
104
ALA
100
H
TYR
101
n
105
TYR
101
H
TRP
102
n
106
TRP
102
H
GLY
103
n
107
GLY
103
H
GLN
104
n
108
GLN
104
H
GLY
105
n
109
GLY
105
H
THR
106
n
110
THR
106
H
LEU
107
n
111
LEU
107
H
VAL
108
n
112
VAL
108
H
THR
109
n
113
THR
109
H
VAL
110
n
114
VAL
110
H
SER
111
n
115
SER
111
H
ALA
112
n
116
ALA
112
H
ALA
113
n
117
ALA
113
H
LYS
114
n
118
LYS
114
H
THR
115
n
119
THR
115
H
THR
116
n
120
THR
116
H
ALA
117
n
121
ALA
117
H
PRO
118
n
122
PRO
118
H
SER
119
n
123
SER
119
H
VAL
120
n
124
VAL
120
H
TYR
121
n
125
TYR
121
H
PRO
122
n
126
PRO
122
H
LEU
123
n
127
LEU
123
H
ALA
124
n
128
ALA
124
H
PRO
125
n
129
PRO
125
H
VAL
126
n
130
VAL
126
H
CYS
127
n
131
CYS
127
H
GLY
128
n
132
GLY
128
H
n
133
129
H
n
134
130
H
n
135
131
H
GLY
132
n
136
GLY
132
H
SER
133
n
137
SER
133
H
SER
134
n
138
SER
134
H
VAL
135
n
139
VAL
135
H
THR
136
n
140
THR
136
H
LEU
137
n
141
LEU
137
H
GLY
138
n
142
GLY
138
H
CYS
139
n
143
CYS
139
H
LEU
140
n
144
LEU
140
H
VAL
141
n
145
VAL
141
H
LYS
142
n
146
LYS
142
H
GLY
143
n
147
GLY
143
H
TYR
144
n
148
TYR
144
H
PHE
145
n
149
PHE
145
H
PRO
146
n
150
PRO
146
H
GLU
147
n
151
GLU
147
H
PRO
148
n
152
PRO
148
H
VAL
149
n
153
VAL
149
H
THR
150
n
154
THR
150
H
LEU
151
n
155
LEU
151
H
THR
152
n
156
THR
152
H
TRP
153
n
157
TRP
153
H
ASN
154
n
158
ASN
154
H
SER
155
n
159
SER
155
H
GLY
156
n
160
GLY
156
H
SER
157
n
161
SER
157
H
LEU
158
n
162
LEU
158
H
SER
159
n
163
SER
159
H
SER
160
n
164
SER
160
H
GLY
161
n
165
GLY
161
H
VAL
162
n
166
VAL
162
H
HIS
163
n
167
HIS
163
H
THR
164
n
168
THR
164
H
PHE
165
n
169
PHE
165
H
PRO
166
n
170
PRO
166
H
ALA
167
n
171
ALA
167
H
VAL
168
n
172
VAL
168
H
LEU
169
n
173
LEU
169
H
GLN
170
n
174
GLN
170
H
SER
171
n
175
SER
171
H
ASP
172
n
176
ASP
172
H
LEU
173
n
177
LEU
173
H
TYR
174
n
178
TYR
174
H
THR
175
n
179
THR
175
H
LEU
176
n
180
LEU
176
H
SER
177
n
181
SER
177
H
SER
178
n
182
SER
178
H
SER
179
n
183
SER
179
H
VAL
180
n
184
VAL
180
H
THR
181
n
185
THR
181
H
VAL
182
n
186
VAL
182
H
THR
183
n
187
THR
183
H
SER
184
n
188
SER
184
H
SER
185
n
189
SER
185
H
THR
186
n
190
THR
186
H
TRP
187
n
191
TRP
187
H
PRO
188
n
192
PRO
188
H
SER
189
n
193
SER
189
H
GLN
190
n
194
GLN
190
H
SER
191
n
195
SER
191
H
ILE
192
n
196
ILE
192
H
THR
193
n
197
THR
193
H
CYS
194
n
198
CYS
194
H
ASN
195
n
199
ASN
195
H
VAL
196
n
200
VAL
196
H
ALA
197
n
201
ALA
197
H
HIS
198
n
202
HIS
198
H
PRO
199
n
203
PRO
199
H
ALA
200
n
204
ALA
200
H
SER
201
n
205
SER
201
H
SER
202
n
206
SER
202
H
THR
203
n
207
THR
203
H
LYS
204
n
208
LYS
204
H
VAL
205
n
209
VAL
205
H
ASP
206
n
210
ASP
206
H
LYS
207
n
211
LYS
207
H
LYS
208
n
212
LYS
208
H
ILE
209
n
213
ILE
209
H
GLU
210
n
214
GLU
210
H
PRO
211
n
215
PRO
211
H
ARG
212
n
216
ARG
212
H
GLY
213
n
217
GLY
213
H
PRO
214
n
218
PRO
214
H
THR
215
n
219
THR
215
H
ILE
216
n
220
ILE
216
H
n
221
217
H
ASP
1
n
1
ASP
1
L
VAL
2
n
2
VAL
2
L
VAL
3
n
3
VAL
3
L
MET
4
n
4
MET
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
THR
7
n
7
THR
7
L
PRO
8
n
8
PRO
8
L
LEU
9
n
9
LEU
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
SER
12
n
12
SER
12
L
VAL
13
n
13
VAL
13
L
THR
14
n
14
THR
14
L
LEU
15
n
15
LEU
15
L
GLY
16
n
16
GLY
16
L
GLN
17
n
17
GLN
17
L
PRO
18
n
18
PRO
18
L
ALA
19
n
19
ALA
19
L
SER
20
n
20
SER
20
L
ILE
21
n
21
ILE
21
L
SER
22
n
22
SER
22
L
CYS
23
n
23
CYS
23
L
LYS
24
n
24
LYS
24
L
SER
25
n
25
SER
25
L
SER
26
n
26
SER
26
L
GLN
27
n
27
GLN
27
L
SER
28
n
28
SER
28
L
LEU
29
n
29
LEU
29
L
LEU
30
n
30
LEU
30
L
ASP
31
n
31
ASP
31
L
SER
32
n
32
SER
32
L
ASP
33
n
33
ASP
33
L
GLY
34
n
34
GLY
34
L
LYS
35
n
35
LYS
35
L
THR
36
n
36
THR
36
L
TYR
37
n
37
TYR
37
L
LEU
38
n
38
LEU
38
L
ASN
39
n
39
ASN
39
L
TRP
40
n
40
TRP
40
L
LEU
41
n
41
LEU
41
L
LEU
42
n
42
LEU
42
L
GLN
43
n
43
GLN
43
L
ARG
44
n
44
ARG
44
L
PRO
45
n
45
PRO
45
L
GLY
46
n
46
GLY
46
L
GLN
47
n
47
GLN
47
L
SER
48
n
48
SER
48
L
PRO
49
n
49
PRO
49
L
LYS
50
n
50
LYS
50
L
ARG
51
n
51
ARG
51
L
LEU
52
n
52
LEU
52
L
ILE
53
n
53
ILE
53
L
TYR
54
n
54
TYR
54
L
LEU
55
n
55
LEU
55
L
VAL
56
n
56
VAL
56
L
SER
57
n
57
SER
57
L
LYS
58
n
58
LYS
58
L
LEU
59
n
59
LEU
59
L
ALA
60
n
60
ALA
60
L
SER
61
n
61
SER
61
L
GLY
62
n
62
GLY
62
L
VAL
63
n
63
VAL
63
L
PRO
64
n
64
PRO
64
L
ASP
65
n
65
ASP
65
L
ARG
66
n
66
ARG
66
L
PHE
67
n
67
PHE
67
L
THR
68
n
68
THR
68
L
GLY
69
n
69
GLY
69
L
SER
70
n
70
SER
70
L
GLY
71
n
71
GLY
71
L
SER
72
n
72
SER
72
L
GLY
73
n
73
GLY
73
L
THR
74
n
74
THR
74
L
ASP
75
n
75
ASP
75
L
PHE
76
n
76
PHE
76
L
THR
77
n
77
THR
77
L
LEU
78
n
78
LEU
78
L
LYS
79
n
79
LYS
79
L
ILE
80
n
80
ILE
80
L
ASN
81
n
81
ASN
81
L
ARG
82
n
82
ARG
82
L
VAL
83
n
83
VAL
83
L
GLU
84
n
84
GLU
84
L
ALA
85
n
85
ALA
85
L
GLU
86
n
86
GLU
86
L
ASP
87
n
87
ASP
87
L
LEU
88
n
88
LEU
88
L
GLY
89
n
89
GLY
89
L
ILE
90
n
90
ILE
90
L
TYR
91
n
91
TYR
91
L
TYR
92
n
92
TYR
92
L
CYS
93
n
93
CYS
93
L
TRP
94
n
94
TRP
94
L
GLN
95
n
95
GLN
95
L
GLY
96
n
96
GLY
96
L
THR
97
n
97
THR
97
L
HIS
98
n
98
HIS
98
L
PHE
99
n
99
PHE
99
L
PRO
100
n
100
PRO
100
L
TRP
101
n
101
TRP
101
L
THR
102
n
102
THR
102
L
PHE
103
n
103
PHE
103
L
GLY
104
n
104
GLY
104
L
GLY
105
n
105
GLY
105
L
GLY
106
n
106
GLY
106
L
THR
107
n
107
THR
107
L
LYS
108
n
108
LYS
108
L
LEU
109
n
109
LEU
109
L
GLU
110
n
110
GLU
110
L
ILE
111
n
111
ILE
111
L
LYS
112
n
112
LYS
112
L
ARG
113
n
113
ARG
113
L
ALA
114
n
114
ALA
114
L
ASP
115
n
115
ASP
115
L
ALA
116
n
116
ALA
116
L
ALA
117
n
117
ALA
117
L
PRO
118
n
118
PRO
118
L
THR
119
n
119
THR
119
L
VAL
120
n
120
VAL
120
L
SER
121
n
121
SER
121
L
ILE
122
n
122
ILE
122
L
PHE
123
n
123
PHE
123
L
PRO
124
n
124
PRO
124
L
PRO
125
n
125
PRO
125
L
SER
126
n
126
SER
126
L
SER
127
n
127
SER
127
L
GLU
128
n
128
GLU
128
L
GLN
129
n
129
GLN
129
L
LEU
130
n
130
LEU
130
L
THR
131
n
131
THR
131
L
SER
132
n
132
SER
132
L
GLY
133
n
133
GLY
133
L
GLY
134
n
134
GLY
134
L
ALA
135
n
135
ALA
135
L
SER
136
n
136
SER
136
L
VAL
137
n
137
VAL
137
L
VAL
138
n
138
VAL
138
L
CYS
139
n
139
CYS
139
L
PHE
140
n
140
PHE
140
L
LEU
141
n
141
LEU
141
L
ASN
142
n
142
ASN
142
L
ASN
143
n
143
ASN
143
L
PHE
144
n
144
PHE
144
L
TYR
145
n
145
TYR
145
L
PRO
146
n
146
PRO
146
L
LYS
147
n
147
LYS
147
L
ASP
148
n
148
ASP
148
L
ILE
149
n
149
ILE
149
L
ASN
150
n
150
ASN
150
L
VAL
151
n
151
VAL
151
L
LYS
152
n
152
LYS
152
L
TRP
153
n
153
TRP
153
L
LYS
154
n
154
LYS
154
L
ILE
155
n
155
ILE
155
L
ASP
156
n
156
ASP
156
L
GLY
157
n
157
GLY
157
L
SER
158
n
158
SER
158
L
GLU
159
n
159
GLU
159
L
ARG
160
n
160
ARG
160
L
GLN
161
n
161
GLN
161
L
ASN
162
n
162
ASN
162
L
GLY
163
n
163
GLY
163
L
VAL
164
n
164
VAL
164
L
LEU
165
n
165
LEU
165
L
ASN
166
n
166
ASN
166
L
SER
167
n
167
SER
167
L
TRP
168
n
168
TRP
168
L
THR
169
n
169
THR
169
L
ASP
170
n
170
ASP
170
L
GLN
171
n
171
GLN
171
L
ASP
172
n
172
ASP
172
L
SER
173
n
173
SER
173
L
LYS
174
n
174
LYS
174
L
ASP
175
n
175
ASP
175
L
SER
176
n
176
SER
176
L
THR
177
n
177
THR
177
L
TYR
178
n
178
TYR
178
L
SER
179
n
179
SER
179
L
MET
180
n
180
MET
180
L
SER
181
n
181
SER
181
L
SER
182
n
182
SER
182
L
THR
183
n
183
THR
183
L
LEU
184
n
184
LEU
184
L
THR
185
n
185
THR
185
L
LEU
186
n
186
LEU
186
L
THR
187
n
187
THR
187
L
LYS
188
n
188
LYS
188
L
ASP
189
n
189
ASP
189
L
GLU
190
n
190
GLU
190
L
TYR
191
n
191
TYR
191
L
GLU
192
n
192
GLU
192
L
ARG
193
n
193
ARG
193
L
HIS
194
n
194
HIS
194
L
ASN
195
n
195
ASN
195
L
SER
196
n
196
SER
196
L
TYR
197
n
197
TYR
197
L
THR
198
n
198
THR
198
L
CYS
199
n
199
CYS
199
L
GLU
200
n
200
GLU
200
L
ALA
201
n
201
ALA
201
L
THR
202
n
202
THR
202
L
HIS
203
n
203
HIS
203
L
LYS
204
n
204
LYS
204
L
n
205
205
L
n
206
206
L
n
207
207
L
SER
208
n
208
SER
208
L
PRO
209
n
209
PRO
209
L
ILE
210
n
210
ILE
210
L
VAL
211
n
211
VAL
211
L
LYS
212
n
212
LYS
212
L
SER
213
n
213
SER
213
L
PHE
214
n
214
PHE
214
L
ASN
215
n
215
ASN
215
L
ARG
216
n
216
ARG
216
L
ASN
217
n
217
ASN
217
L
GLU
218
n
218
GLU
218
L
CYS
219
n
219
CYS
219
L
LEU
660
n
1
LEU
660
P
LEU
661
n
2
LEU
661
P
GLU
662
n
3
GLU
662
P
LEU
663
n
4
LEU
663
P
ASP
664
n
5
ASP
664
P
LYS
665
n
6
LYS
665
P
TRP
666
n
7
TRP
666
P
ALA
667
n
8
ALA
667
P
NH2
668
n
9
NH2
668
P
1.4640
-0.5831
-2.0358
0.9435
0.0680
2.1133
-0.1758
0.2695
-0.1441
0.4536
0.0109
0.1885
-0.2362
-0.5715
0.2159
0.3340
0.0663
-0.0174
0.3294
-0.0628
0.2085
refined
6.8970
-21.0727
3.8943
X-RAY DIFFRACTION
1.7552
0.1544
-1.3752
1.7150
0.8551
2.4446
-0.0877
0.1760
-0.1769
-0.0211
-0.0457
-0.0455
-0.0318
0.1306
0.1253
0.1866
0.0757
-0.0194
0.2225
-0.0281
0.1603
refined
14.1935
-19.9172
6.3434
X-RAY DIFFRACTION
2.9695
-1.7733
-1.8650
2.0270
1.9544
3.6864
0.1121
-0.1916
0.4271
-0.2699
0.0730
-0.0795
-0.2044
-0.0988
-0.0859
0.3545
-0.0338
0.0687
0.2664
-0.0010
0.3382
refined
-10.8774
-15.9718
38.8010
X-RAY DIFFRACTION
1.7010
0.2218
-0.5834
1.9502
0.1116
3.8170
-0.0771
0.0758
-0.0143
-0.0552
0.0877
0.1727
0.2411
-0.5177
-0.0159
0.1588
-0.0017
-0.0393
0.2591
0.0351
0.1592
refined
-7.6121
-18.1842
30.5780
X-RAY DIFFRACTION
2.6799
0.1339
-1.0719
1.0933
0.9517
2.4630
0.4534
-0.0570
0.4009
-0.2256
-0.0362
0.0137
-0.5937
0.0266
-0.4147
0.5041
-0.0474
0.1617
0.2124
-0.0085
0.2759
refined
18.6894
2.1866
12.3026
X-RAY DIFFRACTION
1.6452
0.1500
-1.7461
0.6355
-0.3906
3.3416
0.2205
-0.0276
0.2115
-0.0766
0.0793
0.0819
-0.2631
0.1191
-0.2693
0.2345
0.0040
-0.0061
0.1466
-0.0469
0.1799
refined
7.3563
-8.4860
27.3458
X-RAY DIFFRACTION
1.6940
0.0180
-1.8577
1.5019
1.7493
2.2713
0.0569
-0.4196
0.1974
-0.0329
0.1219
-0.0296
0.0404
0.4519
-0.1763
0.1353
0.0298
-0.0410
0.2736
-0.0191
0.1914
refined
4.5769
-11.7083
40.1609
X-RAY DIFFRACTION
0.6578
-0.8061
-0.7898
0.1273
0.4765
1.9841
-0.1801
-0.4046
0.0398
0.2527
0.2906
-0.0284
0.1878
0.7346
-0.0704
0.3182
0.0516
0.0070
0.4012
-0.0142
0.1814
refined
-1.8486
-16.5386
51.3723
X-RAY DIFFRACTION
0.4364
-0.0973
0.1441
-0.0066
-0.1112
0.1656
-0.1500
0.3061
0.1169
-0.4850
0.4830
0.4176
-0.4887
-0.4830
-0.3300
0.5462
0.0721
0.0455
0.5343
0.0628
0.3300
refined
18.6053
-4.4647
-4.9447
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
CHAIN H AND RESID 1:32
X-RAY DIFFRACTION
2
CHAIN H AND RESID 33:121
X-RAY DIFFRACTION
3
CHAIN H AND RESID 122:139
X-RAY DIFFRACTION
4
CHAIN H AND RESID 140:220
X-RAY DIFFRACTION
5
CHAIN L AND RESID 1:82
X-RAY DIFFRACTION
6
CHAIN L AND RESID 83:141
X-RAY DIFFRACTION
7
CHAIN L AND RESID 142:188
X-RAY DIFFRACTION
8
CHAIN L AND RESID 189:219
X-RAY DIFFRACTION
9
CHAIN P AND RESID 659:668
author_and_software_defined_assembly
PISA
3
trimeric
4990
-29
19650
L
ASN
143
B
ND2
ASN
143
1_555
H
ZN
222
D
ZN
ZN
1_555
L
HOH
268
H
O
HOH
1_555
77.9
L
ASN
143
B
ND2
ASN
143
1_555
H
ZN
222
D
ZN
ZN
1_555
H
HOH
244
G
O
HOH
1_555
144.6
L
HOH
268
H
O
HOH
1_555
H
ZN
222
D
ZN
ZN
1_555
H
HOH
244
G
O
HOH
1_555
91.6
L
ASN
143
B
ND2
ASN
143
1_555
H
ZN
222
D
ZN
ZN
1_555
H
HIS
163
A
NE2
HIS
167
1_555
90.1
L
HOH
268
H
O
HOH
1_555
H
ZN
222
D
ZN
ZN
1_555
H
HIS
163
A
NE2
HIS
167
1_555
82.6
H
HOH
244
G
O
HOH
1_555
H
ZN
222
D
ZN
ZN
1_555
H
HIS
163
A
NE2
HIS
167
1_555
122.4
H
ASP
1
A
OD2
ASP
1
1_555
H
ZN
223
E
ZN
ZN
1_555
H
HOH
288
G
O
HOH
1_555
91.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
GLN
5
A
N
GLN
5
H
O
THR
23
A
O
THR
23
L
N
THR
7
B
N
THR
7
L
O
SER
22
B
O
SER
22
L
N
ALA
19
B
N
ALA
19
L
O
ILE
80
B
O
ILE
80
L
O
LYS
79
B
O
LYS
79
L
N
THR
68
B
N
THR
68
L
N
LEU
11
B
N
LEU
11
L
O
LYS
108
B
O
LYS
108
L
O
LEU
109
B
O
LEU
109
L
N
GLY
89
B
N
GLY
89
L
O
ILE
90
B
O
ILE
90
L
N
GLN
43
B
N
GLN
43
L
N
LEU
42
B
N
LEU
42
L
O
LYS
50
B
O
LYS
50
L
N
TYR
54
B
N
TYR
54
L
O
LYS
58
B
O
LYS
58
L
N
LEU
11
B
N
LEU
11
L
O
LYS
108
B
O
LYS
108
L
O
LEU
109
B
O
LEU
109
L
N
GLY
89
B
N
GLY
89
L
N
GLN
95
B
N
GLN
95
L
O
THR
102
B
O
THR
102
L
N
SER
121
B
N
SER
121
L
O
PHE
140
B
O
PHE
140
L
N
ALA
135
B
N
ALA
135
L
O
LEU
186
B
O
LEU
186
L
O
SER
181
B
O
SER
181
L
N
SER
167
B
N
SER
167
L
O
SER
158
B
O
SER
158
L
N
ILE
155
B
N
ILE
155
L
N
ASN
150
B
N
ASN
150
L
O
THR
202
B
O
THR
202
L
N
TYR
197
B
N
TYR
197
L
O
PHE
214
B
O
PHE
214
1
H
ASP
129
A
ASP
133
1
Y
1
H
THR
130
A
THR
134
1
Y
1
H
THR
131
A
THR
135
1
Y
1
H
LYS
217
A
LYS
221
1
Y
1
L
THR
205
B
THR
205
1
Y
1
L
SER
206
B
SER
206
1
Y
1
L
THR
207
B
THR
207
1
Y
1
H
SER
15
80.30
-17.93
1
H
TYR
27
-171.19
136.39
1
H
TYR
33
82.08
171.64
1
H
ASN
43
91.58
-0.87
1
H
SER
155
56.92
18.60
1
L
VAL
56
72.47
-53.48
41.75
7.70800
0.00000
5.83400
0.71100
-0.00000
-8.41900
0.215
0.177
0.180
1.99
27.10
1916
25977
7.380
92.0
1.00
1.00
1.200
1
0.050
MOLECULAR REPLACEMENT
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
50.67
0.32
1.99
27.10
331
3736
3
0
3402
0.004
3491
0.768
4756
15.031
1215
0.051
542
0.003
598
0.3110
0.2230
2.0380
89
1125
60.00
0.2580
0.1990
2.0930
123
1547
84.00
0.2690
0.1960
2.1550
127
1678
90.00
0.2570
0.2040
2.2240
142
1703
92.00
0.3140
0.2030
2.3040
133
1721
93.00
0.2480
0.1970
2.3960
145
1773
95.00
0.2930
0.2010
2.5050
146
1769
95.00
0.2530
0.2050
2.6370
134
1771
95.00
0.2530
0.2020
2.8020
141
1801
96.00
0.2460
0.1970
3.0180
147
1839
98.00
0.1900
0.1710
3.3210
147
1819
98.00
0.2190
0.1540
3.8010
146
1825
98.00
0.1560
0.1380
4.7840
147
1838
98.00
0.1800
0.1730
27.0980
149
1852
96.00
29.30
1.980
50.000
3LEY
26922
5.000
0.08100
1
31.5000
96.7
1.98
2.05
5.200
0.34200
86.9
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.005
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASER
6a7 Antibody Heavy Chain, 6a7 Antibody Light Chain, Envelope glycoprotein gp41
2F5 Epitope scaffold elicited anti-HIV-1 monoclonal antibody 6a7 in complex with HIV-1 GP41
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
L
GLU
84
B
GLU
84
HELX_P
L
LEU
88
B
LEU
88
5
4
5
L
SER
126
B
SER
126
HELX_P
L
SER
132
B
SER
132
1
5
7
L
LYS
188
B
LYS
188
HELX_P
L
GLU
192
B
GLU
192
1
6
5
L
ASN
217
B
ASN
217
HELX_P
L
CYS
219
B
CYS
219
5
7
3
disulf
2.060
H
CYS
22
A
SG
CYS
22
1_555
H
CYS
92
A
SG
CYS
96
1_555
disulf
2.034
H
CYS
139
A
SG
CYS
143
1_555
H
CYS
194
A
SG
CYS
198
1_555
disulf
2.038
L
CYS
23
B
SG
CYS
23
1_555
L
CYS
93
B
SG
CYS
93
1_555
disulf
2.028
L
CYS
139
B
SG
CYS
139
1_555
L
CYS
199
B
SG
CYS
199
1_555
metalc
2.321
L
ASN
143
B
ND2
ASN
143
1_555
H
ZN
222
D
ZN
ZN
1_555
metalc
2.542
L
HIS
194
B
NE2
HIS
194
1_555
L
ZN
233
F
ZN
ZN
1_555
metalc
2.586
H
ASP
1
A
OD2
ASP
1
1_555
H
ZN
223
E
ZN
ZN
1_555
metalc
2.427
H
ZN
223
E
ZN
ZN
1_555
H
HOH
288
G
O
HOH
1_555
metalc
2.484
H
ZN
222
D
ZN
ZN
1_555
L
HOH
268
H
O
HOH
1_555
metalc
2.509
H
ZN
222
D
ZN
ZN
1_555
H
HOH
244
G
O
HOH
1_555
metalc
2.213
H
HIS
163
A
NE2
HIS
167
1_555
H
ZN
222
D
ZN
ZN
1_555
IMMUNE SYSTEM
HIV-1, GP-41, MONOCLONAL ANTIBODY, 2F5, SCAFFOLD, EPITOPE, TRANSPLANT, GRAFT, RE-ELCITATION, Envelope protein, IMMUNE SYSTEM, VACCINE DESIGN
H
ASN
96
A
ASN
100
1
H
TYR
97
A
TYR
101
1.79
H
PHE
145
A
PHE
149
1
H
PRO
146
A
PRO
150
-1.85
H
GLU
147
A
GLU
151
1
H
PRO
148
A
PRO
152
-3.77
H
TRP
187
A
TRP
191
1
H
PRO
188
A
PRO
192
7.76
L
THR
7
B
THR
7
1
L
PRO
8
B
PRO
8
-4.16
L
PHE
99
B
PHE
99
1
L
PRO
100
B
PRO
100
3.28
L
TYR
145
B
TYR
145
1
L
PRO
146
B
PRO
146
0.32
3LEY
PDB
1
1
3LEY
DVQLQESGPGLVKPSQSLSLTCTVTGYLITTDYAWNWIRQFPGNKLEWMGYISYSGFTSYNPSLKSQISITRDTSKNQFF
LQLNSVTTEDTATYYCAFGNYLPAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG
SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIK
3LEY
PDB
2
1
3LEY
DVVMTQTPLSLSVTLGQPASISCKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSKLASGVPDRFTGSGSGTDFTLKI
NRVEAEDLGIYYCWQGTHFPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
Q9IJQ0_9HIV1
UNP
3
100
Q9IJQ0
LLELDKWA(NH2)
1
221
3LEY
1
217
3LEY
H
1
1
221
1
219
3LEY
1
219
3LEY
L
2
1
219
100
108
3LEY
660
668
Q9IJQ0
P
3
1
9
4
6
4
4
6
4
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
GLN
3
A
GLN
3
H
SER
7
A
SER
7
H
LEU
18
A
LEU
18
H
THR
25
A
THR
25
H
LEU
11
A
LEU
11
H
VAL
12
A
VAL
12
H
LEU
11
A
LEU
11
H
VAL
12
A
VAL
12
L
MET
4
B
MET
4
L
THR
7
B
THR
7
L
ALA
19
B
ALA
19
L
SER
25
B
SER
25
L
ASP
75
B
ASP
75
L
ILE
80
B
ILE
80
L
PHE
67
B
PHE
67
L
SER
72
B
SER
72
L
SER
10
B
SER
10
L
THR
14
B
THR
14
L
THR
107
B
THR
107
L
LYS
112
B
LYS
112
L
GLY
89
B
GLY
89
L
GLN
95
B
GLN
95
L
LEU
38
B
LEU
38
L
GLN
43
B
GLN
43
L
LYS
50
B
LYS
50
L
TYR
54
B
TYR
54
L
LYS
58
B
LYS
58
L
LEU
59
B
LEU
59
L
SER
10
B
SER
10
L
THR
14
B
THR
14
L
THR
107
B
THR
107
L
LYS
112
B
LYS
112
L
GLY
89
B
GLY
89
L
GLN
95
B
GLN
95
L
THR
102
B
THR
102
L
PHE
103
B
PHE
103
L
THR
119
B
THR
119
L
PHE
123
B
PHE
123
L
GLY
134
B
GLY
134
L
PHE
144
B
PHE
144
L
TYR
178
B
TYR
178
L
THR
187
B
THR
187
L
VAL
164
B
VAL
164
L
TRP
168
B
TRP
168
L
SER
158
B
SER
158
L
GLU
159
B
GLU
159
L
ILE
149
B
ILE
149
L
ILE
155
B
ILE
155
L
SER
196
B
SER
196
L
HIS
203
B
HIS
203
L
ILE
210
B
ILE
210
L
ASN
215
B
ASN
215
BINDING SITE FOR RESIDUE ZN H 222
Software
4
BINDING SITE FOR RESIDUE ZN H 223
Software
5
BINDING SITE FOR RESIDUE ZN L 233
Software
3
H
HIS
163
A
HIS
167
4
1_555
H
HOH
244
G
HOH
4
1_555
L
ASN
143
B
ASN
143
4
1_555
L
HOH
268
H
HOH
4
1_555
H
ASP
1
A
ASP
1
5
1_555
H
HOH
275
G
HOH
5
1_555
H
HOH
288
G
HOH
5
1_555
L
HIS
98
B
HIS
98
5
1_455
L
HOH
321
H
HOH
5
1_455
L
GLU
190
B
GLU
190
3
1_555
L
HIS
194
B
HIS
194
3
1_555
L
HOH
290
H
HOH
3
1_555
4
P 1 21 1