0.014610
0.000000
0.000000
0.000000
0.015910
0.000000
0.000000
0.000000
0.027301
0.00000
0.00000
0.00000
Stura, E.A.
Dive, V.
Devel, L.
Czarny, B.
Vera, L.
Beau, F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
68.447
62.853
36.629
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C29 H31 N3 O7 S
565.637
N-{3-[4-(4-phenylthiophen-2-yl)phenyl]propanoyl}-L-alpha-glutamyl-L-alpha-glutamyl-amide
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C2 H5 N O2
75.067
ACETOHYDROXAMIC ACID
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C12 H26 O7
282.331
HEXAETHYLENE GLYCOL
POLYETHYLENE GLYCOL PEG400
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
O
Y
76
N
S
N
77
N
C
N
78
N
C
N
79
N
C
Y
80
N
C
Y
81
N
C
Y
82
N
C
Y
83
N
C
Y
84
N
C
Y
85
N
C
Y
86
N
C
Y
87
N
C
Y
88
N
C
Y
89
N
C
Y
90
N
C
Y
91
N
C
Y
92
N
C
Y
93
N
C
Y
94
N
C
Y
95
N
C
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
C
N
102
N
C
N
103
N
O
N
104
N
O
N
105
N
N
N
106
S
C
N
107
N
C
N
108
N
O
N
109
N
C
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
O
N
114
N
N
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
S
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
C
N
152
N
C
N
153
N
O
N
154
N
N
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
O
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
C
N
196
N
C
N
197
N
O
N
198
N
N
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
Y
210
N
C
Y
211
N
N
Y
212
N
C
Y
213
N
C
Y
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
S
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
N
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
S
N
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
O
N
322
N
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
C
N
327
N
O
N
328
N
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
N
408
N
O
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
R
C
N
422
N
O
N
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
N
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
N
448
N
O
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
N
N
462
S
C
N
463
N
C
N
464
N
O
N
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
N
472
N
O
N
473
N
O
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
N
N
486
S
C
N
487
N
C
N
488
N
O
N
489
N
C
N
490
N
C
N
491
N
C
N
492
N
O
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
Y
95
N
sing
Y
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
Y
113
N
doub
Y
114
N
sing
N
115
N
sing
Y
116
N
doub
Y
117
N
sing
N
118
N
sing
Y
119
N
sing
Y
120
N
sing
N
121
N
sing
Y
122
N
doub
Y
123
N
sing
N
124
N
sing
Y
125
N
sing
Y
126
N
doub
Y
127
N
doub
Y
128
N
sing
Y
129
N
sing
N
130
N
sing
Y
131
N
doub
N
132
N
sing
Y
133
N
sing
N
134
N
sing
Y
135
N
doub
N
136
N
sing
N
137
N
sing
Y
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
Y
209
N
sing
Y
210
N
doub
Y
211
N
doub
N
212
N
sing
Y
213
N
sing
N
214
N
sing
Y
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
doub
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
Y
430
N
doub
Y
431
N
sing
Y
432
N
sing
N
433
N
sing
Y
434
N
doub
Y
435
N
sing
Y
436
N
sing
N
437
N
sing
Y
438
N
sing
Y
439
N
doub
N
440
N
sing
Y
441
N
doub
N
442
N
sing
Y
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
doub
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
Y
458
N
doub
Y
459
N
sing
Y
460
N
sing
N
461
N
sing
Y
462
N
doub
N
463
N
sing
Y
464
N
doub
N
465
N
sing
Y
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
doub
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
285
35900
35909
10.1074/jbc.M110.139634
20817735
Insights from selective non-phosphinic inhibitors of MMP-12 tailored to fit with an S1' loop canonical conformation.
2010
10.2210/pdb3lik/pdb
pdb_00003lik
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2009-04-15
ADSC QUANTUM 4r
Diamond (111), Ge(220)
SINGLE WAVELENGTH
M
x-ray
1
0.9334
1.0
ID14-2
ESRF
0.9334
SYNCHROTRON
ESRF BEAMLINE ID14-2
17615.670
Macrophage metalloelastase
3.4.24.65
MMP-12 catalitic subunit (RESIDUES 106-263)
F171D
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
40.078
CALCIUM ION
3
syn
non-polymer
565.637
N-{3-[4-(4-phenylthiophen-2-yl)phenyl]propanoyl}-L-alpha-glutamyl-L-alpha-glutamyl-amide
1
syn
non-polymer
75.067
ACETOHYDROXAMIC ACID
1
syn
non-polymer
282.331
HEXAETHYLENE GLYCOL
3
syn
non-polymer
18.015
water
179
nat
water
MME, Matrix metalloproteinase-12, MMP-12, Macrophage elastase, ME, hME
no
no
MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA
FGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA
FGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
MMP12, HME
9606
Homo sapiens
562
Escherichia coli
BL21
Pet24A
1
2.24
45.00
VAPOR DIFFUSION, SITTING DROP
8.5
MMP12 at 4mg/ml co-crystallization with AHA and non-chelating inhibitor with precipitant: 25% PEG 10K, 100mM NaCl,0.2M imidazole malate, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Other
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-09-01
1
1
2011-07-13
1
2
2012-12-12
1
3
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of the catalytic domain of human MMP12 complexed with the inhibitor NNGH at 1.3 A resolution
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
RCSB
Y
RCSB
2010-01-25
REL
REL
ZN
ZINC ION
CA
CALCIUM ION
EEG
N-{3-[4-(4-phenylthiophen-2-yl)phenyl]propanoyl}-L-alpha-glutamyl-L-alpha-glutamyl-amide
HAE
ACETOHYDROXAMIC ACID
P6G
HEXAETHYLENE GLYCOL
HOH
water
1RMZ
PDB ENTRY 1RMZ
PDB
experimental model
Inhibitor
N-{3-[4-(4-PHENYLTHIOPHEN-2-YL)PHENYL]PROPANOYL}-L-ALPHA-GLUTAMYL-L-ALPHA-GLUTAMYL-AMIDE
Peptide-like
ZN
264
2
ZN
ZN
264
A
ZN
265
2
ZN
ZN
265
A
CA
266
3
CA
CA
266
A
CA
267
3
CA
CA
267
A
CA
268
3
CA
CA
268
A
EEG
301
4
EEG
EEG
301
A
HAE
302
5
HAE
HAE
302
A
P2K
303
6
P6G
P6G
303
A
P2K
304
6
P6G
P6G
304
A
P2K
305
6
P6G
P6G
305
A
HOH
1
7
HOH
HOH
1
A
HOH
2
7
HOH
HOH
2
A
HOH
3
7
HOH
HOH
3
A
HOH
4
7
HOH
HOH
4
A
HOH
5
7
HOH
HOH
5
A
HOH
6
7
HOH
HOH
6
A
HOH
7
7
HOH
HOH
7
A
HOH
8
7
HOH
HOH
8
A
HOH
9
7
HOH
HOH
9
A
HOH
10
7
HOH
HOH
10
A
HOH
11
7
HOH
HOH
11
A
HOH
12
7
HOH
HOH
12
A
HOH
13
7
HOH
HOH
13
A
HOH
14
7
HOH
HOH
14
A
HOH
15
7
HOH
HOH
15
A
HOH
16
7
HOH
HOH
16
A
HOH
17
7
HOH
HOH
17
A
HOH
18
7
HOH
HOH
18
A
HOH
19
7
HOH
HOH
19
A
HOH
20
7
HOH
HOH
20
A
HOH
21
7
HOH
HOH
21
A
HOH
22
7
HOH
HOH
22
A
HOH
23
7
HOH
HOH
23
A
HOH
24
7
HOH
HOH
24
A
HOH
25
7
HOH
HOH
25
A
HOH
26
7
HOH
HOH
26
A
HOH
27
7
HOH
HOH
27
A
HOH
28
7
HOH
HOH
28
A
HOH
29
7
HOH
HOH
29
A
HOH
30
7
HOH
HOH
30
A
HOH
31
7
HOH
HOH
31
A
HOH
32
7
HOH
HOH
32
A
HOH
33
7
HOH
HOH
33
A
HOH
34
7
HOH
HOH
34
A
HOH
35
7
HOH
HOH
35
A
HOH
36
7
HOH
HOH
36
A
HOH
37
7
HOH
HOH
37
A
HOH
38
7
HOH
HOH
38
A
HOH
39
7
HOH
HOH
39
A
HOH
40
7
HOH
HOH
40
A
HOH
41
7
HOH
HOH
41
A
HOH
42
7
HOH
HOH
42
A
HOH
43
7
HOH
HOH
43
A
HOH
44
7
HOH
HOH
44
A
HOH
45
7
HOH
HOH
45
A
HOH
46
7
HOH
HOH
46
A
HOH
47
7
HOH
HOH
47
A
HOH
48
7
HOH
HOH
48
A
HOH
49
7
HOH
HOH
49
A
HOH
50
7
HOH
HOH
50
A
HOH
51
7
HOH
HOH
51
A
HOH
52
7
HOH
HOH
52
A
HOH
53
7
HOH
HOH
53
A
HOH
54
7
HOH
HOH
54
A
HOH
55
7
HOH
HOH
55
A
HOH
56
7
HOH
HOH
56
A
HOH
57
7
HOH
HOH
57
A
HOH
58
7
HOH
HOH
58
A
HOH
59
7
HOH
HOH
59
A
HOH
60
7
HOH
HOH
60
A
HOH
61
7
HOH
HOH
61
A
HOH
62
7
HOH
HOH
62
A
HOH
63
7
HOH
HOH
63
A
HOH
64
7
HOH
HOH
64
A
HOH
65
7
HOH
HOH
65
A
HOH
66
7
HOH
HOH
66
A
HOH
67
7
HOH
HOH
67
A
HOH
68
7
HOH
HOH
68
A
HOH
69
7
HOH
HOH
69
A
HOH
70
7
HOH
HOH
70
A
HOH
71
7
HOH
HOH
71
A
HOH
72
7
HOH
HOH
72
A
HOH
73
7
HOH
HOH
73
A
HOH
74
7
HOH
HOH
74
A
HOH
75
7
HOH
HOH
75
A
HOH
76
7
HOH
HOH
76
A
HOH
77
7
HOH
HOH
77
A
HOH
78
7
HOH
HOH
78
A
HOH
79
7
HOH
HOH
79
A
HOH
80
7
HOH
HOH
80
A
HOH
81
7
HOH
HOH
81
A
HOH
82
7
HOH
HOH
82
A
HOH
83
7
HOH
HOH
83
A
HOH
84
7
HOH
HOH
84
A
HOH
85
7
HOH
HOH
85
A
HOH
86
7
HOH
HOH
86
A
HOH
87
7
HOH
HOH
87
A
HOH
88
7
HOH
HOH
88
A
HOH
89
7
HOH
HOH
89
A
HOH
90
7
HOH
HOH
90
A
HOH
91
7
HOH
HOH
91
A
HOH
92
7
HOH
HOH
92
A
HOH
93
7
HOH
HOH
93
A
HOH
94
7
HOH
HOH
94
A
HOH
95
7
HOH
HOH
95
A
HOH
96
7
HOH
HOH
96
A
HOH
97
7
HOH
HOH
97
A
HOH
98
7
HOH
HOH
98
A
HOH
99
7
HOH
HOH
99
A
HOH
100
7
HOH
HOH
100
A
HOH
101
7
HOH
HOH
101
A
HOH
102
7
HOH
HOH
102
A
HOH
103
7
HOH
HOH
103
A
HOH
104
7
HOH
HOH
104
A
HOH
105
7
HOH
HOH
269
A
HOH
106
7
HOH
HOH
270
A
HOH
107
7
HOH
HOH
271
A
HOH
108
7
HOH
HOH
272
A
HOH
109
7
HOH
HOH
273
A
HOH
110
7
HOH
HOH
274
A
HOH
111
7
HOH
HOH
275
A
HOH
112
7
HOH
HOH
276
A
HOH
113
7
HOH
HOH
277
A
HOH
114
7
HOH
HOH
278
A
HOH
115
7
HOH
HOH
279
A
HOH
116
7
HOH
HOH
280
A
HOH
117
7
HOH
HOH
281
A
HOH
118
7
HOH
HOH
282
A
HOH
119
7
HOH
HOH
283
A
HOH
120
7
HOH
HOH
284
A
HOH
121
7
HOH
HOH
285
A
HOH
122
7
HOH
HOH
286
A
HOH
123
7
HOH
HOH
287
A
HOH
124
7
HOH
HOH
288
A
HOH
125
7
HOH
HOH
289
A
HOH
126
7
HOH
HOH
290
A
HOH
127
7
HOH
HOH
291
A
HOH
128
7
HOH
HOH
292
A
HOH
129
7
HOH
HOH
293
A
HOH
130
7
HOH
HOH
294
A
HOH
131
7
HOH
HOH
295
A
HOH
132
7
HOH
HOH
296
A
HOH
133
7
HOH
HOH
297
A
HOH
134
7
HOH
HOH
298
A
HOH
135
7
HOH
HOH
299
A
HOH
136
7
HOH
HOH
300
A
HOH
137
7
HOH
HOH
306
A
HOH
138
7
HOH
HOH
307
A
HOH
139
7
HOH
HOH
308
A
HOH
140
7
HOH
HOH
309
A
HOH
141
7
HOH
HOH
310
A
HOH
142
7
HOH
HOH
311
A
HOH
143
7
HOH
HOH
312
A
HOH
144
7
HOH
HOH
313
A
HOH
145
7
HOH
HOH
314
A
HOH
146
7
HOH
HOH
315
A
HOH
147
7
HOH
HOH
316
A
HOH
148
7
HOH
HOH
317
A
HOH
149
7
HOH
HOH
318
A
HOH
150
7
HOH
HOH
319
A
HOH
151
7
HOH
HOH
320
A
HOH
152
7
HOH
HOH
321
A
HOH
153
7
HOH
HOH
322
A
HOH
154
7
HOH
HOH
323
A
HOH
155
7
HOH
HOH
324
A
HOH
156
7
HOH
HOH
325
A
HOH
157
7
HOH
HOH
326
A
HOH
158
7
HOH
HOH
327
A
HOH
159
7
HOH
HOH
328
A
HOH
160
7
HOH
HOH
329
A
HOH
161
7
HOH
HOH
330
A
HOH
162
7
HOH
HOH
331
A
HOH
163
7
HOH
HOH
332
A
HOH
164
7
HOH
HOH
333
A
HOH
165
7
HOH
HOH
334
A
HOH
166
7
HOH
HOH
335
A
HOH
167
7
HOH
HOH
336
A
HOH
168
7
HOH
HOH
337
A
HOH
169
7
HOH
HOH
338
A
HOH
170
7
HOH
HOH
339
A
HOH
171
7
HOH
HOH
340
A
HOH
172
7
HOH
HOH
341
A
HOH
173
7
HOH
HOH
342
A
HOH
174
7
HOH
HOH
343
A
HOH
175
7
HOH
HOH
344
A
HOH
176
7
HOH
HOH
345
A
HOH
177
7
HOH
HOH
346
A
HOH
178
7
HOH
HOH
347
A
HOH
179
7
HOH
HOH
348
A
MET
105
n
1
MET
105
A
GLY
106
n
2
GLY
106
A
PRO
107
n
3
PRO
107
A
VAL
108
n
4
VAL
108
A
TRP
109
n
5
TRP
109
A
ARG
110
n
6
ARG
110
A
LYS
111
n
7
LYS
111
A
HIS
112
n
8
HIS
112
A
TYR
113
n
9
TYR
113
A
ILE
114
n
10
ILE
114
A
THR
115
n
11
THR
115
A
TYR
116
n
12
TYR
116
A
ARG
117
n
13
ARG
117
A
ILE
118
n
14
ILE
118
A
ASN
119
n
15
ASN
119
A
ASN
120
n
16
ASN
120
A
TYR
121
n
17
TYR
121
A
THR
122
n
18
THR
122
A
PRO
123
n
19
PRO
123
A
ASP
124
n
20
ASP
124
A
MET
125
n
21
MET
125
A
ASN
126
n
22
ASN
126
A
ARG
127
n
23
ARG
127
A
GLU
128
n
24
GLU
128
A
ASP
129
n
25
ASP
129
A
VAL
130
n
26
VAL
130
A
ASP
131
n
27
ASP
131
A
TYR
132
n
28
TYR
132
A
ALA
133
n
29
ALA
133
A
ILE
134
n
30
ILE
134
A
ARG
135
n
31
ARG
135
A
LYS
136
n
32
LYS
136
A
ALA
137
n
33
ALA
137
A
PHE
138
n
34
PHE
138
A
GLN
139
n
35
GLN
139
A
VAL
140
n
36
VAL
140
A
TRP
141
n
37
TRP
141
A
SER
142
n
38
SER
142
A
ASN
143
n
39
ASN
143
A
VAL
144
n
40
VAL
144
A
THR
145
n
41
THR
145
A
PRO
146
n
42
PRO
146
A
LEU
147
n
43
LEU
147
A
LYS
148
n
44
LYS
148
A
PHE
149
n
45
PHE
149
A
SER
150
n
46
SER
150
A
LYS
151
n
47
LYS
151
A
ILE
152
n
48
ILE
152
A
ASN
153
n
49
ASN
153
A
THR
154
n
50
THR
154
A
GLY
155
n
51
GLY
155
A
MET
156
n
52
MET
156
A
ALA
157
n
53
ALA
157
A
ASP
158
n
54
ASP
158
A
ILE
159
n
55
ILE
159
A
LEU
160
n
56
LEU
160
A
VAL
161
n
57
VAL
161
A
VAL
162
n
58
VAL
162
A
PHE
163
n
59
PHE
163
A
ALA
164
n
60
ALA
164
A
ARG
165
n
61
ARG
165
A
GLY
166
n
62
GLY
166
A
ALA
167
n
63
ALA
167
A
HIS
168
n
64
HIS
168
A
GLY
169
n
65
GLY
169
A
ASP
170
n
66
ASP
170
A
ASP
171
n
67
ASP
171
A
HIS
172
n
68
HIS
172
A
ALA
173
n
69
ALA
173
A
PHE
174
n
70
PHE
174
A
ASP
175
n
71
ASP
175
A
GLY
176
n
72
GLY
176
A
LYS
177
n
73
LYS
177
A
GLY
178
n
74
GLY
178
A
GLY
179
n
75
GLY
179
A
ILE
180
n
76
ILE
180
A
LEU
181
n
77
LEU
181
A
ALA
182
n
78
ALA
182
A
HIS
183
n
79
HIS
183
A
ALA
184
n
80
ALA
184
A
PHE
185
n
81
PHE
185
A
GLY
186
n
82
GLY
186
A
PRO
187
n
83
PRO
187
A
GLY
188
n
84
GLY
188
A
SER
189
n
85
SER
189
A
GLY
190
n
86
GLY
190
A
ILE
191
n
87
ILE
191
A
GLY
192
n
88
GLY
192
A
GLY
193
n
89
GLY
193
A
ASP
194
n
90
ASP
194
A
ALA
195
n
91
ALA
195
A
HIS
196
n
92
HIS
196
A
PHE
197
n
93
PHE
197
A
ASP
198
n
94
ASP
198
A
GLU
199
n
95
GLU
199
A
ASP
200
n
96
ASP
200
A
GLU
201
n
97
GLU
201
A
PHE
202
n
98
PHE
202
A
TRP
203
n
99
TRP
203
A
THR
204
n
100
THR
204
A
THR
205
n
101
THR
205
A
HIS
206
n
102
HIS
206
A
SER
207
n
103
SER
207
A
GLY
208
n
104
GLY
208
A
GLY
209
n
105
GLY
209
A
THR
210
n
106
THR
210
A
ASN
211
n
107
ASN
211
A
LEU
212
n
108
LEU
212
A
PHE
213
n
109
PHE
213
A
LEU
214
n
110
LEU
214
A
THR
215
n
111
THR
215
A
ALA
216
n
112
ALA
216
A
VAL
217
n
113
VAL
217
A
HIS
218
n
114
HIS
218
A
GLU
219
n
115
GLU
219
A
ILE
220
n
116
ILE
220
A
GLY
221
n
117
GLY
221
A
HIS
222
n
118
HIS
222
A
SER
223
n
119
SER
223
A
LEU
224
n
120
LEU
224
A
GLY
225
n
121
GLY
225
A
LEU
226
n
122
LEU
226
A
GLY
227
n
123
GLY
227
A
HIS
228
n
124
HIS
228
A
SER
229
n
125
SER
229
A
SER
230
n
126
SER
230
A
ASP
231
n
127
ASP
231
A
PRO
232
n
128
PRO
232
A
LYS
233
n
129
LYS
233
A
ALA
234
n
130
ALA
234
A
VAL
235
n
131
VAL
235
A
MET
236
n
132
MET
236
A
PHE
237
n
133
PHE
237
A
PRO
238
n
134
PRO
238
A
THR
239
n
135
THR
239
A
TYR
240
n
136
TYR
240
A
LYS
241
n
137
LYS
241
A
TYR
242
n
138
TYR
242
A
VAL
243
n
139
VAL
243
A
ASP
244
n
140
ASP
244
A
ILE
245
n
141
ILE
245
A
ASN
246
n
142
ASN
246
A
THR
247
n
143
THR
247
A
PHE
248
n
144
PHE
248
A
ARG
249
n
145
ARG
249
A
LEU
250
n
146
LEU
250
A
SER
251
n
147
SER
251
A
ALA
252
n
148
ALA
252
A
ASP
253
n
149
ASP
253
A
ASP
254
n
150
ASP
254
A
ILE
255
n
151
ILE
255
A
ARG
256
n
152
ARG
256
A
GLY
257
n
153
GLY
257
A
ILE
258
n
154
ILE
258
A
GLN
259
n
155
GLN
259
A
SER
260
n
156
SER
260
A
LEU
261
n
157
LEU
261
A
TYR
262
n
158
TYR
262
A
GLY
263
n
159
GLY
263
A
author_and_software_defined_assembly
PISA
1
monomeric
A
HOH
17
L
O
HOH
1_555
A
CA
266
D
CA
CA
1_555
A
HOH
24
L
O
HOH
1_555
96.1
A
HOH
17
L
O
HOH
1_555
A
CA
266
D
CA
CA
1_555
A
ASP
158
A
O
ASP
54
1_555
86.0
A
HOH
24
L
O
HOH
1_555
A
CA
266
D
CA
CA
1_555
A
ASP
158
A
O
ASP
54
1_555
84.1
A
HOH
17
L
O
HOH
1_555
A
CA
266
D
CA
CA
1_555
A
GLY
190
A
O
GLY
86
1_555
83.0
A
HOH
24
L
O
HOH
1_555
A
CA
266
D
CA
CA
1_555
A
GLY
190
A
O
GLY
86
1_555
92.3
A
ASP
158
A
O
ASP
54
1_555
A
CA
266
D
CA
CA
1_555
A
GLY
190
A
O
GLY
86
1_555
168.1
A
HOH
17
L
O
HOH
1_555
A
CA
266
D
CA
CA
1_555
A
GLY
192
A
O
GLY
88
1_555
176.0
A
HOH
24
L
O
HOH
1_555
A
CA
266
D
CA
CA
1_555
A
GLY
192
A
O
GLY
88
1_555
80.7
A
ASP
158
A
O
ASP
54
1_555
A
CA
266
D
CA
CA
1_555
A
GLY
192
A
O
GLY
88
1_555
95.9
A
GLY
190
A
O
GLY
86
1_555
A
CA
266
D
CA
CA
1_555
A
GLY
192
A
O
GLY
88
1_555
94.8
A
HOH
17
L
O
HOH
1_555
A
CA
266
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
93.0
A
HOH
24
L
O
HOH
1_555
A
CA
266
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
167.9
A
ASP
158
A
O
ASP
54
1_555
A
CA
266
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
88.6
A
GLY
190
A
O
GLY
86
1_555
A
CA
266
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
96.7
A
GLY
192
A
O
GLY
88
1_555
A
CA
266
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
90.5
A
HOH
25
L
O
HOH
1_555
A
CA
267
E
CA
CA
1_555
A
HOH
36
L
O
HOH
1_555
80.9
A
HOH
25
L
O
HOH
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
124
A
OD2
ASP
20
1_555
92.7
A
HOH
36
L
O
HOH
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
124
A
OD2
ASP
20
1_555
135.6
A
HOH
25
L
O
HOH
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
124
A
OD1
ASP
20
1_555
82.5
A
HOH
36
L
O
HOH
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
124
A
OD1
ASP
20
1_555
85.2
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
124
A
OD1
ASP
20
1_555
50.4
A
HOH
25
L
O
HOH
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
107.9
A
HOH
36
L
O
HOH
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
83.1
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
139.4
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
162.8
A
HOH
25
L
O
HOH
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
165.9
A
HOH
36
L
O
HOH
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
88.6
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
88.2
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
87.3
A
GLU
199
A
O
GLU
95
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
79.9
A
HOH
25
L
O
HOH
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
77.3
A
HOH
36
L
O
HOH
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
143.8
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
74.4
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
119.7
A
GLU
199
A
O
GLU
95
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
76.6
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
116.3
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
265
C
ZN
ZN
1_555
A
ASP
170
A
OD2
ASP
66
1_555
114.1
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
183
A
A
NE2
HIS
79
1_555
113.8
A
ASP
170
A
OD2
ASP
66
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
183
A
A
NE2
HIS
79
1_555
113.2
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
183
B
A
NE2
HIS
79
1_555
106.7
A
ASP
170
A
OD2
ASP
66
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
183
B
A
NE2
HIS
79
1_555
121.1
A
HIS
183
A
A
NE2
HIS
79
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
183
B
A
NE2
HIS
79
1_555
8.2
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
109.4
A
ASP
170
A
OD2
ASP
66
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
92.5
A
HIS
183
A
A
NE2
HIS
79
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
111.8
A
HIS
183
B
A
NE2
HIS
79
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
112.0
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
268
F
CA
CA
1_555
A
GLY
176
A
O
GLY
72
1_555
90.8
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
268
F
CA
CA
1_555
A
GLY
178
A
O
GLY
74
1_555
88.1
A
GLY
176
A
O
GLY
72
1_555
A
CA
268
F
CA
CA
1_555
A
GLY
178
A
O
GLY
74
1_555
90.7
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
268
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
89.7
A
GLY
176
A
O
GLY
72
1_555
A
CA
268
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
176.8
A
GLY
178
A
O
GLY
74
1_555
A
CA
268
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
92.4
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
268
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
92.3
A
GLY
176
A
O
GLY
72
1_555
A
CA
268
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
86.7
A
GLY
178
A
O
GLY
74
1_555
A
CA
268
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
177.4
A
ILE
180
A
O
ILE
76
1_555
A
CA
268
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
90.2
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
268
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
173.3
A
GLY
176
A
O
GLY
72
1_555
A
CA
268
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
91.8
A
GLY
178
A
O
GLY
74
1_555
A
CA
268
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
85.8
A
ILE
180
A
O
ILE
76
1_555
A
CA
268
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
88.0
A
ASP
198
A
OD1
ASP
94
1_555
A
CA
268
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
94.0
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HIS
222
A
NE2
HIS
118
1_555
102.0
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HIS
228
A
NE2
HIS
124
1_555
102.3
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HIS
228
A
NE2
HIS
124
1_555
95.9
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HAE
302
H
O
HAE
1_555
102.6
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HAE
302
H
O
HAE
1_555
94.6
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HAE
302
H
O
HAE
1_555
150.2
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HAE
302
H
O2
HAE
1_555
125.6
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HAE
302
H
O2
HAE
1_555
132.0
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HAE
302
H
O2
HAE
1_555
81.6
A
HAE
302
H
O
HAE
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HAE
302
H
O2
HAE
1_555
70.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
148
A
O
LYS
44
A
N
ILE
114
A
N
ILE
10
A
N
ARG
117
A
N
ARG
13
A
O
VAL
161
A
O
VAL
57
A
N
VAL
162
A
N
VAL
58
A
O
PHE
197
A
O
PHE
93
A
O
HIS
196
A
O
HIS
92
A
N
HIS
183
A
N
HIS
79
A
N
THR
204
A
N
THR
100
A
O
THR
210
A
O
THR
106
1
A
HOH
269
L
HOH
1
A
HOH
328
L
HOH
1
A
O1
P6G
303
I
O1
P6G
1
1
N
1
A
C2
P6G
303
I
C2
P6G
1
1
N
1
A
C3
P6G
303
I
C3
P6G
1
1
N
1
A
O4
P6G
303
I
O4
P6G
1
1
N
1
A
C5
P6G
303
I
C5
P6G
1
1
N
1
A
C6
P6G
303
I
C6
P6G
1
1
N
1
A
O7
P6G
303
I
O7
P6G
1
1
N
1
A
C8
P6G
303
I
C8
P6G
1
1
N
1
A
C9
P6G
303
I
C9
P6G
1
1
N
1
A
C17
P6G
303
I
C17
P6G
1
1
N
1
A
C18
P6G
303
I
C18
P6G
1
1
N
1
A
O19
P6G
303
I
O19
P6G
1
1
N
1
A
O1
P6G
304
J
O1
P6G
1
1
N
1
A
C2
P6G
304
J
C2
P6G
1
1
N
1
A
C3
P6G
304
J
C3
P6G
1
1
N
1
A
O4
P6G
304
J
O4
P6G
1
1
N
1
A
C5
P6G
304
J
C5
P6G
1
1
N
1
A
C6
P6G
304
J
C6
P6G
1
1
N
1
A
O7
P6G
304
J
O7
P6G
1
1
N
1
A
C8
P6G
304
J
C8
P6G
1
1
N
1
A
C9
P6G
304
J
C9
P6G
1
1
N
1
A
C17
P6G
304
J
C17
P6G
1
1
N
1
A
C18
P6G
304
J
C18
P6G
1
1
N
1
A
O19
P6G
304
J
O19
P6G
1
1
N
1
A
O1
P6G
305
K
O1
P6G
1
1
N
1
A
C2
P6G
305
K
C2
P6G
1
1
N
1
A
C3
P6G
305
K
C3
P6G
1
1
N
1
A
O4
P6G
305
K
O4
P6G
1
1
N
1
A
C5
P6G
305
K
C5
P6G
1
1
N
1
A
C6
P6G
305
K
C6
P6G
1
1
N
1
A
O7
P6G
305
K
O7
P6G
1
1
N
1
A
C8
P6G
305
K
C8
P6G
1
1
N
1
A
C9
P6G
305
K
C9
P6G
1
1
N
1
A
C17
P6G
305
K
C17
P6G
1
1
N
1
A
C18
P6G
305
K
C18
P6G
1
1
N
1
A
O19
P6G
305
K
O19
P6G
1
1
N
1
A
A
O
O
HOH
HOH
48
48
2.04
1_555
2_555
1
A
ARG
110
-96.96
34.45
1
A
ARG
110
-99.02
37.39
1
A
HIS
206
-135.90
-157.54
1
A
ASP
244
-38.99
112.02
20.746
0.2093
0.1574
0.1599
1.800
46.295
676
13436
5.03
88.16
0.16
RANDOM
1
Isotropic
THROUGHOUT
1.36
rigid body
0.90
1.11
PDB ENTRY 1RMZ
ML
FLAT BULK SOLVENT MODEL
47.345
0.366
1.800
46.295
179
1496
71
0
1246
0.007
1393
1.044
1887
19.599
507
0.070
187
0.015
246
0.2580
0.1848
1.9390
116
2216
78.00
0.2237
0.1578
2.1341
127
2276
80.00
0.2340
0.1540
2.4429
148
2619
91.00
0.1999
0.1483
3.0777
149
2739
95.00
0.1874
0.1553
46.3105
136
2910
95.00
12.7
1.80
46.27
3LIK
15104
13458
1.00
2.00
0.08
0.08
1
15.23
6.08
89.10
0.235
1.80
1.90
5.7
1719
0.309
6.3
79.7
data collection
DNA
phasing
MOLREP
refinement
PHENIX
(phenix.refine)
data reduction
MOSFLM
data scaling
SCALA
Human MMP12 in complex with non-zinc chelating inhibitor
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
7
N
N
A
ASN
126
A
ASN
22
HELX_P
A
ASN
143
A
ASN
39
1
1
18
A
LEU
212
A
LEU
108
HELX_P
A
LEU
224
A
LEU
120
1
2
13
A
ASP
244
A
ASP
140
HELX_P
A
PHE
248
A
PHE
144
5
3
5
A
SER
251
A
SER
147
HELX_P
A
TYR
262
A
TYR
158
1
4
12
metalc
2.447
A
HOH
17
L
O
HOH
1_555
A
CA
266
D
CA
CA
1_555
metalc
2.526
A
HOH
24
L
O
HOH
1_555
A
CA
266
D
CA
CA
1_555
metalc
2.553
A
HOH
25
L
O
HOH
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.527
A
HOH
36
L
O
HOH
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.479
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.678
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.401
A
ASP
158
A
O
ASP
54
1_555
A
CA
266
D
CA
CA
1_555
metalc
2.114
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
265
C
ZN
ZN
1_555
metalc
2.023
A
ASP
170
A
OD2
ASP
66
1_555
A
ZN
265
C
ZN
ZN
1_555
metalc
2.391
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.348
A
GLY
176
A
O
GLY
72
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.394
A
GLY
178
A
O
GLY
74
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.412
A
ILE
180
A
O
ILE
76
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.061
A
A
HIS
183
A
NE2
HIS
79
1_555
A
ZN
265
C
ZN
ZN
1_555
metalc
2.132
B
A
HIS
183
A
NE2
HIS
79
1_555
A
ZN
265
C
ZN
ZN
1_555
metalc
2.369
A
GLY
190
A
O
GLY
86
1_555
A
CA
266
D
CA
CA
1_555
metalc
2.304
A
GLY
192
A
O
GLY
88
1_555
A
CA
266
D
CA
CA
1_555
metalc
2.477
A
ASP
194
A
OD2
ASP
90
1_555
A
CA
266
D
CA
CA
1_555
metalc
2.156
A
HIS
196
A
ND1
HIS
92
1_555
A
ZN
265
C
ZN
ZN
1_555
metalc
2.345
A
ASP
198
A
OD1
ASP
94
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.401
A
GLU
199
A
O
GLU
95
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.518
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.511
A
GLU
201
A
O
GLU
97
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.334
A
GLU
201
A
OE2
GLU
97
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.095
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
264
B
ZN
ZN
1_555
metalc
2.114
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
264
B
ZN
ZN
1_555
metalc
2.119
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
264
B
ZN
ZN
1_555
metalc
2.233
A
ZN
264
B
ZN
ZN
1_555
A
HAE
302
H
O
HAE
1_555
metalc
2.370
A
ZN
264
B
ZN
ZN
1_555
A
HAE
302
H
O2
HAE
1_555
HYDROLASE/HYDROLASE INHIBITOR
MMP12 elastase non-chelating inhibitor, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR complex
MMP12_HUMAN
UNP
1
106
P39900
GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAF
GPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
106
263
3LIK
106
263
P39900
A
1
2
159
1
expression tag
MET
105
3LIK
A
P39900
UNP
1
1
PHE
engineered mutation
ASP
171
3LIK
A
P39900
UNP
171
67
5
2
parallel
parallel
parallel
anti-parallel
parallel
A
LYS
148
A
LYS
44
A
LYS
151
A
LYS
47
A
TYR
113
A
TYR
9
A
ILE
118
A
ILE
14
A
ILE
159
A
ILE
55
A
ALA
164
A
ALA
60
A
ALA
195
A
ALA
91
A
ASP
198
A
ASP
94
A
ALA
182
A
ALA
78
A
ALA
184
A
ALA
80
A
TRP
203
A
TRP
99
A
THR
204
A
THR
100
A
THR
210
A
THR
106
A
ASN
211
A
ASN
107
BINDING SITE FOR RESIDUE ZN A 264
A
ZN
264
Software
4
BINDING SITE FOR RESIDUE ZN A 265
A
ZN
265
Software
4
BINDING SITE FOR RESIDUE CA A 266
A
CA
266
Software
6
BINDING SITE FOR RESIDUE CA A 267
A
CA
267
Software
5
BINDING SITE FOR RESIDUE CA A 268
A
CA
268
Software
6
BINDING SITE FOR RESIDUE EEG A 301
A
EEG
301
Software
25
BINDING SITE FOR RESIDUE HAE A 302
A
HAE
302
Software
10
BINDING SITE FOR RESIDUE P6G A 303
A
P6G
303
Software
10
BINDING SITE FOR RESIDUE P6G A 304
A
P6G
304
Software
3
BINDING SITE FOR RESIDUE P6G A 305
A
P6G
305
Software
10
A
HIS
218
A
HIS
114
4
1_555
A
HIS
222
A
HIS
118
4
1_555
A
HIS
228
A
HIS
124
4
1_555
A
HAE
302
H
HAE
4
1_555
A
HIS
168
A
HIS
64
4
1_555
A
ASP
170
A
ASP
66
4
1_555
A
HIS
183
A
HIS
79
4
1_555
A
HIS
196
A
HIS
92
4
1_555
A
HOH
17
L
HOH
6
1_555
A
HOH
24
L
HOH
6
1_555
A
ASP
158
A
ASP
54
6
1_555
A
GLY
190
A
GLY
86
6
1_555
A
GLY
192
A
GLY
88
6
1_555
A
ASP
194
A
ASP
90
6
1_555
A
HOH
25
L
HOH
5
1_555
A
HOH
36
L
HOH
5
1_555
A
ASP
124
A
ASP
20
5
1_555
A
GLU
199
A
GLU
95
5
1_555
A
GLU
201
A
GLU
97
5
1_555
A
ASP
175
A
ASP
71
6
1_555
A
GLY
176
A
GLY
72
6
1_555
A
GLY
178
A
GLY
74
6
1_555
A
ILE
180
A
ILE
76
6
1_555
A
ASP
198
A
ASP
94
6
1_555
A
GLU
201
A
GLU
97
6
1_555
A
HOH
91
L
HOH
25
2_565
A
HOH
102
L
HOH
25
1_555
A
THR
154
A
THR
50
25
3_555
A
GLY
155
A
GLY
51
25
3_555
A
MET
156
A
MET
52
25
3_555
A
GLY
178
A
GLY
74
25
1_555
A
GLY
179
A
GLY
75
25
1_555
A
ILE
180
A
ILE
76
25
1_555
A
LEU
181
A
LEU
77
25
1_555
A
ALA
182
A
ALA
78
25
1_555
A
HIS
218
A
HIS
114
25
1_555
A
GLU
219
A
GLU
115
25
1_555
A
PRO
232
A
PRO
128
25
1_555
A
PRO
232
A
PRO
128
25
2_565
A
LYS
233
A
LYS
129
25
1_555
A
ALA
234
A
ALA
130
25
1_555
A
PHE
237
A
PHE
133
25
1_555
A
PRO
238
A
PRO
134
25
1_555
A
THR
239
A
THR
135
25
1_555
A
TYR
240
A
TYR
136
25
1_555
A
LYS
241
A
LYS
137
25
1_555
A
HOH
282
L
HOH
25
1_555
A
HOH
284
L
HOH
25
1_555
A
HOH
292
L
HOH
25
1_555
A
HAE
302
H
HAE
25
1_555
A
HOH
1
L
HOH
10
1_555
A
HOH
82
L
HOH
10
1_555
A
ALA
182
A
ALA
78
10
1_555
A
HIS
183
A
HIS
79
10
1_555
A
HIS
218
A
HIS
114
10
1_555
A
GLU
219
A
GLU
115
10
1_555
A
HIS
222
A
HIS
118
10
1_555
A
HIS
228
A
HIS
124
10
1_555
A
ZN
264
B
ZN
10
1_555
A
EEG
301
G
EEG
10
1_555
A
HOH
11
L
HOH
10
3_545
A
HOH
44
L
HOH
10
3_545
A
HOH
100
L
HOH
10
1_555
A
SER
150
A
SER
46
10
1_555
A
LYS
151
A
LYS
47
10
1_555
A
ILE
152
A
ILE
48
10
1_555
A
ASP
171
A
ASP
67
10
3_545
A
HIS
172
A
HIS
68
10
3_545
A
ALA
173
A
ALA
69
10
3_545
A
HOH
270
L
HOH
10
1_555
A
HIS
228
A
HIS
124
3
1_555
A
SER
229
A
SER
125
3
1_555
A
SER
230
A
SER
126
3
1_555
A
HOH
83
L
HOH
10
1_555
A
HOH
87
L
HOH
10
1_554
A
PRO
107
A
PRO
3
10
1_555
A
VAL
108
A
VAL
4
10
1_555
A
ASN
126
A
ASN
22
10
1_554
A
ASP
129
A
ASP
25
10
1_554
A
PRO
187
A
PRO
83
10
1_555
A
THR
205
A
THR
101
10
1_554
A
HOH
325
L
HOH
10
1_555
A
HOH
329
L
HOH
10
1_555
18
P 21 21 2