0.021614
0.012479
0.000000
0.000000
0.024957
0.000000
0.000000
0.000000
0.005800
0.00000
0.00000
0.00000
Charpentier, T.H.
Weber, D.J.
Wilder, P.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.000
90.000
120.000
46.267
46.267
172.413
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C20 H15 N O4
333.337
13-methyl-13,14-dihydro[1,3]benzodioxolo[5,6-c][1,3]dioxolo[4,5-i]phenanthridine
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Int.J.High Throughput Screen
1179-1381
2010
109
126
10.2147/IJHTS.S8210
21132089
In vitro screening and structural characterization of inhibitors of the S100B-p53 interaction.
2010
100
1
CCD
2008-06-02
MARMOSAIC 325 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
0.80000
1.0
BL12-2
SSRL
0.80000
SYNCHROTRON
SSRL BEAMLINE BL12-2
10681.974
Protein S100-B
2
man
polymer
40.078
CALCIUM ION
4
syn
non-polymer
333.337
13-methyl-13,14-dihydro[1,3]benzodioxolo[5,6-c][1,3]dioxolo[4,5-i]phenanthridine
2
syn
non-polymer
18.015
water
123
nat
water
S100 calcium-binding protein B, S-100 protein subunit beta, S-100 protein beta chain
no
no
MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM
ITTACHEFFEHE
MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM
ITTACHEFFEHE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
bovine
sample
S100B
9913
Bos taurus
562
Escherichia coli
BL21(DE3)
plasmid
pET11b
1
2.49
50.67
VAPOR DIFFUSION, SITTING DROP
8.5
PEG3350, CaCl2, Li2SO4, Cacodylate buffer, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
software
repository
Initial release
Version format compliance
Refinement description
1
0
2010-12-29
1
1
2011-07-13
1
2
2017-11-01
RCSB
Y
RCSB
2010-01-28
REL
REL
CA
CALCIUM ION
SGE
13-methyl-13,14-dihydro[1,3]benzodioxolo[5,6-c][1,3]dioxolo[4,5-i]phenanthridine
HOH
water
CA
1
2
CA
CA
92
A
CA
2
2
CA
CA
93
A
SGE
1
3
SGE
SGE
94
A
CA
3
2
CA
CA
92
B
CA
4
2
CA
CA
93
B
SGE
1
3
SGE
SGE
94
B
HOH
95
4
HOH
HOH
95
A
HOH
96
4
HOH
HOH
96
A
HOH
97
4
HOH
HOH
97
A
HOH
1
4
HOH
HOH
98
A
HOH
2
4
HOH
HOH
99
A
HOH
100
4
HOH
HOH
100
A
HOH
101
4
HOH
HOH
101
A
HOH
8
4
HOH
HOH
102
A
HOH
103
4
HOH
HOH
103
A
HOH
9
4
HOH
HOH
104
A
HOH
105
4
HOH
HOH
105
A
HOH
106
4
HOH
HOH
106
A
HOH
10
4
HOH
HOH
107
A
HOH
108
4
HOH
HOH
108
A
HOH
11
4
HOH
HOH
109
A
HOH
110
4
HOH
HOH
110
A
HOH
111
4
HOH
HOH
111
A
HOH
112
4
HOH
HOH
112
A
HOH
113
4
HOH
HOH
113
A
HOH
114
4
HOH
HOH
114
A
HOH
115
4
HOH
HOH
115
A
HOH
14
4
HOH
HOH
116
A
HOH
117
4
HOH
HOH
117
A
HOH
118
4
HOH
HOH
118
A
HOH
16
4
HOH
HOH
119
A
HOH
120
4
HOH
HOH
120
A
HOH
121
4
HOH
HOH
121
A
HOH
122
4
HOH
HOH
122
A
HOH
123
4
HOH
HOH
123
A
HOH
18
4
HOH
HOH
124
A
HOH
125
4
HOH
HOH
125
A
HOH
19
4
HOH
HOH
126
A
HOH
127
4
HOH
HOH
127
A
HOH
20
4
HOH
HOH
128
A
HOH
21
4
HOH
HOH
129
A
HOH
24
4
HOH
HOH
130
A
HOH
25
4
HOH
HOH
131
A
HOH
26
4
HOH
HOH
132
A
HOH
27
4
HOH
HOH
133
A
HOH
28
4
HOH
HOH
134
A
HOH
30
4
HOH
HOH
135
A
HOH
31
4
HOH
HOH
136
A
HOH
32
4
HOH
HOH
137
A
HOH
34
4
HOH
HOH
138
A
HOH
35
4
HOH
HOH
139
A
HOH
38
4
HOH
HOH
140
A
HOH
40
4
HOH
HOH
141
A
HOH
41
4
HOH
HOH
142
A
HOH
45
4
HOH
HOH
143
A
HOH
46
4
HOH
HOH
144
A
HOH
48
4
HOH
HOH
145
A
HOH
50
4
HOH
HOH
146
A
HOH
53
4
HOH
HOH
147
A
HOH
55
4
HOH
HOH
148
A
HOH
56
4
HOH
HOH
149
A
HOH
58
4
HOH
HOH
150
A
HOH
61
4
HOH
HOH
151
A
HOH
62
4
HOH
HOH
152
A
HOH
63
4
HOH
HOH
153
A
HOH
64
4
HOH
HOH
154
A
HOH
67
4
HOH
HOH
155
A
HOH
68
4
HOH
HOH
156
A
HOH
70
4
HOH
HOH
157
A
HOH
71
4
HOH
HOH
158
A
HOH
76
4
HOH
HOH
159
A
HOH
81
4
HOH
HOH
160
A
HOH
82
4
HOH
HOH
161
A
HOH
84
4
HOH
HOH
162
A
HOH
88
4
HOH
HOH
163
A
HOH
91
4
HOH
HOH
164
A
HOH
94
4
HOH
HOH
165
A
HOH
3
4
HOH
HOH
95
B
HOH
4
4
HOH
HOH
96
B
HOH
5
4
HOH
HOH
97
B
HOH
98
4
HOH
HOH
98
B
HOH
99
4
HOH
HOH
99
B
HOH
6
4
HOH
HOH
100
B
HOH
7
4
HOH
HOH
101
B
HOH
102
4
HOH
HOH
102
B
HOH
12
4
HOH
HOH
103
B
HOH
104
4
HOH
HOH
104
B
HOH
13
4
HOH
HOH
105
B
HOH
15
4
HOH
HOH
106
B
HOH
107
4
HOH
HOH
107
B
HOH
17
4
HOH
HOH
108
B
HOH
109
4
HOH
HOH
109
B
HOH
22
4
HOH
HOH
110
B
HOH
23
4
HOH
HOH
111
B
HOH
29
4
HOH
HOH
112
B
HOH
33
4
HOH
HOH
113
B
HOH
36
4
HOH
HOH
114
B
HOH
39
4
HOH
HOH
115
B
HOH
116
4
HOH
HOH
116
B
HOH
42
4
HOH
HOH
117
B
HOH
43
4
HOH
HOH
118
B
HOH
119
4
HOH
HOH
119
B
HOH
44
4
HOH
HOH
120
B
HOH
47
4
HOH
HOH
121
B
HOH
49
4
HOH
HOH
122
B
HOH
51
4
HOH
HOH
123
B
HOH
124
4
HOH
HOH
124
B
HOH
52
4
HOH
HOH
125
B
HOH
126
4
HOH
HOH
126
B
HOH
54
4
HOH
HOH
127
B
HOH
59
4
HOH
HOH
128
B
HOH
60
4
HOH
HOH
129
B
HOH
65
4
HOH
HOH
130
B
HOH
66
4
HOH
HOH
131
B
HOH
69
4
HOH
HOH
132
B
HOH
72
4
HOH
HOH
133
B
HOH
73
4
HOH
HOH
134
B
HOH
74
4
HOH
HOH
135
B
HOH
75
4
HOH
HOH
136
B
HOH
77
4
HOH
HOH
137
B
HOH
78
4
HOH
HOH
138
B
HOH
79
4
HOH
HOH
139
B
HOH
80
4
HOH
HOH
140
B
HOH
85
4
HOH
HOH
141
B
HOH
86
4
HOH
HOH
142
B
HOH
89
4
HOH
HOH
143
B
HOH
90
4
HOH
HOH
144
B
HOH
92
4
HOH
HOH
145
B
HOH
93
4
HOH
HOH
146
B
2.500
2.500
28.740
28.740
Phaser MODE: MR_AUTO
MET
0
n
1
MET
0
A
SER
1
n
2
SER
1
A
GLU
2
n
3
GLU
2
A
LEU
3
n
4
LEU
3
A
GLU
4
n
5
GLU
4
A
LYS
5
n
6
LYS
5
A
ALA
6
n
7
ALA
6
A
VAL
7
n
8
VAL
7
A
VAL
8
n
9
VAL
8
A
ALA
9
n
10
ALA
9
A
LEU
10
n
11
LEU
10
A
ILE
11
n
12
ILE
11
A
ASP
12
n
13
ASP
12
A
VAL
13
n
14
VAL
13
A
PHE
14
n
15
PHE
14
A
HIS
15
n
16
HIS
15
A
GLN
16
n
17
GLN
16
A
TYR
17
n
18
TYR
17
A
SER
18
n
19
SER
18
A
GLY
19
n
20
GLY
19
A
ARG
20
n
21
ARG
20
A
GLU
21
n
22
GLU
21
A
GLY
22
n
23
GLY
22
A
ASP
23
n
24
ASP
23
A
LYS
24
n
25
LYS
24
A
HIS
25
n
26
HIS
25
A
LYS
26
n
27
LYS
26
A
LEU
27
n
28
LEU
27
A
LYS
28
n
29
LYS
28
A
LYS
29
n
30
LYS
29
A
SER
30
n
31
SER
30
A
GLU
31
n
32
GLU
31
A
LEU
32
n
33
LEU
32
A
LYS
33
n
34
LYS
33
A
GLU
34
n
35
GLU
34
A
LEU
35
n
36
LEU
35
A
ILE
36
n
37
ILE
36
A
ASN
37
n
38
ASN
37
A
ASN
38
n
39
ASN
38
A
GLU
39
n
40
GLU
39
A
LEU
40
n
41
LEU
40
A
SER
41
n
42
SER
41
A
HIS
42
n
43
HIS
42
A
PHE
43
n
44
PHE
43
A
LEU
44
n
45
LEU
44
A
GLU
45
n
46
GLU
45
A
GLU
46
n
47
GLU
46
A
ILE
47
n
48
ILE
47
A
LYS
48
n
49
LYS
48
A
GLU
49
n
50
GLU
49
A
GLN
50
n
51
GLN
50
A
GLU
51
n
52
GLU
51
A
VAL
52
n
53
VAL
52
A
VAL
53
n
54
VAL
53
A
ASP
54
n
55
ASP
54
A
LYS
55
n
56
LYS
55
A
VAL
56
n
57
VAL
56
A
MET
57
n
58
MET
57
A
GLU
58
n
59
GLU
58
A
THR
59
n
60
THR
59
A
LEU
60
n
61
LEU
60
A
ASP
61
n
62
ASP
61
A
SER
62
n
63
SER
62
A
ASP
63
n
64
ASP
63
A
GLY
64
n
65
GLY
64
A
ASP
65
n
66
ASP
65
A
GLY
66
n
67
GLY
66
A
GLU
67
n
68
GLU
67
A
CYS
68
n
69
CYS
68
A
ASP
69
n
70
ASP
69
A
PHE
70
n
71
PHE
70
A
GLN
71
n
72
GLN
71
A
GLU
72
n
73
GLU
72
A
PHE
73
n
74
PHE
73
A
MET
74
n
75
MET
74
A
ALA
75
n
76
ALA
75
A
PHE
76
n
77
PHE
76
A
VAL
77
n
78
VAL
77
A
ALA
78
n
79
ALA
78
A
MET
79
n
80
MET
79
A
ILE
80
n
81
ILE
80
A
THR
81
n
82
THR
81
A
THR
82
n
83
THR
82
A
ALA
83
n
84
ALA
83
A
CYS
84
n
85
CYS
84
A
HIS
85
n
86
HIS
85
A
GLU
86
n
87
GLU
86
A
PHE
87
n
88
PHE
87
A
PHE
88
n
89
PHE
88
A
GLU
89
n
90
GLU
89
A
n
91
90
A
n
92
91
A
MET
0
n
1
MET
0
B
SER
1
n
2
SER
1
B
GLU
2
n
3
GLU
2
B
LEU
3
n
4
LEU
3
B
GLU
4
n
5
GLU
4
B
LYS
5
n
6
LYS
5
B
ALA
6
n
7
ALA
6
B
VAL
7
n
8
VAL
7
B
VAL
8
n
9
VAL
8
B
ALA
9
n
10
ALA
9
B
LEU
10
n
11
LEU
10
B
ILE
11
n
12
ILE
11
B
ASP
12
n
13
ASP
12
B
VAL
13
n
14
VAL
13
B
PHE
14
n
15
PHE
14
B
HIS
15
n
16
HIS
15
B
GLN
16
n
17
GLN
16
B
TYR
17
n
18
TYR
17
B
SER
18
n
19
SER
18
B
GLY
19
n
20
GLY
19
B
ARG
20
n
21
ARG
20
B
GLU
21
n
22
GLU
21
B
GLY
22
n
23
GLY
22
B
ASP
23
n
24
ASP
23
B
LYS
24
n
25
LYS
24
B
HIS
25
n
26
HIS
25
B
LYS
26
n
27
LYS
26
B
LEU
27
n
28
LEU
27
B
LYS
28
n
29
LYS
28
B
LYS
29
n
30
LYS
29
B
SER
30
n
31
SER
30
B
GLU
31
n
32
GLU
31
B
LEU
32
n
33
LEU
32
B
LYS
33
n
34
LYS
33
B
GLU
34
n
35
GLU
34
B
LEU
35
n
36
LEU
35
B
ILE
36
n
37
ILE
36
B
ASN
37
n
38
ASN
37
B
ASN
38
n
39
ASN
38
B
GLU
39
n
40
GLU
39
B
LEU
40
n
41
LEU
40
B
SER
41
n
42
SER
41
B
HIS
42
n
43
HIS
42
B
PHE
43
n
44
PHE
43
B
LEU
44
n
45
LEU
44
B
GLU
45
n
46
GLU
45
B
GLU
46
n
47
GLU
46
B
ILE
47
n
48
ILE
47
B
LYS
48
n
49
LYS
48
B
GLU
49
n
50
GLU
49
B
GLN
50
n
51
GLN
50
B
GLU
51
n
52
GLU
51
B
VAL
52
n
53
VAL
52
B
VAL
53
n
54
VAL
53
B
ASP
54
n
55
ASP
54
B
LYS
55
n
56
LYS
55
B
VAL
56
n
57
VAL
56
B
MET
57
n
58
MET
57
B
GLU
58
n
59
GLU
58
B
THR
59
n
60
THR
59
B
LEU
60
n
61
LEU
60
B
ASP
61
n
62
ASP
61
B
SER
62
n
63
SER
62
B
ASP
63
n
64
ASP
63
B
GLY
64
n
65
GLY
64
B
ASP
65
n
66
ASP
65
B
GLY
66
n
67
GLY
66
B
GLU
67
n
68
GLU
67
B
CYS
68
n
69
CYS
68
B
ASP
69
n
70
ASP
69
B
PHE
70
n
71
PHE
70
B
GLN
71
n
72
GLN
71
B
GLU
72
n
73
GLU
72
B
PHE
73
n
74
PHE
73
B
MET
74
n
75
MET
74
B
ALA
75
n
76
ALA
75
B
PHE
76
n
77
PHE
76
B
VAL
77
n
78
VAL
77
B
ALA
78
n
79
ALA
78
B
MET
79
n
80
MET
79
B
ILE
80
n
81
ILE
80
B
THR
81
n
82
THR
81
B
THR
82
n
83
THR
82
B
ALA
83
n
84
ALA
83
B
CYS
84
n
85
CYS
84
B
HIS
85
n
86
HIS
85
B
GLU
86
n
87
GLU
86
B
PHE
87
n
88
PHE
87
B
PHE
88
n
89
PHE
88
B
GLU
89
n
90
GLU
89
B
n
91
90
B
n
92
91
B
14.5732
2.3119
-3.4364
35.8949
2.1659
11.0363
0.0437
0.1983
-0.4452
0.0615
0.5273
-2.1802
-0.2054
1.6650
-0.5710
0.1921
0.0612
-0.0243
0.3784
-0.0800
0.2410
refined
1.4260
-9.5433
-11.4779
X-RAY DIFFRACTION
10.4966
-12.1811
-3.8958
18.9979
3.1706
1.9206
0.2190
-0.2025
0.3631
-0.3985
-0.0354
-0.4136
-0.2358
0.1311
-0.1836
0.3235
0.0358
0.0017
0.0819
-0.0077
0.0586
refined
-5.5143
1.6537
-8.3921
X-RAY DIFFRACTION
4.3374
-0.5632
-1.0772
5.7173
0.5419
8.2607
0.1466
-0.4096
0.2901
0.0438
0.1091
0.1737
-0.7929
-0.1363
-0.2557
0.2545
0.0927
-0.0410
0.0875
-0.0433
0.1112
refined
-12.2031
11.3826
-10.1456
X-RAY DIFFRACTION
4.3903
-1.9198
-0.9906
2.4905
-0.1212
3.4975
0.2125
0.0325
-0.1210
-0.4241
-0.1034
0.1662
-0.3186
-0.1830
-0.1091
0.3150
0.1418
-0.0888
0.1040
-0.0172
0.1508
refined
-16.3547
11.1010
-20.8687
X-RAY DIFFRACTION
3.1477
-3.0397
0.3400
7.9011
2.4643
9.8453
0.1220
-0.1431
-0.3782
-0.1653
-0.0508
0.6793
-0.0310
-0.3535
-0.0712
0.1394
0.0771
-0.0819
0.0812
0.0075
0.1973
refined
-16.9704
1.5252
-13.3068
X-RAY DIFFRACTION
10.4751
-6.2056
-8.7920
9.1384
7.0283
12.6433
0.0828
0.1636
-0.4090
-2.2554
-0.0313
0.0732
-0.6141
0.4169
-0.0515
1.0456
0.0684
-0.0314
0.1696
-0.0071
0.1852
refined
-7.3271
-4.1400
-28.9372
X-RAY DIFFRACTION
7.6917
-0.3088
-3.6809
19.8138
2.5834
13.9421
-0.1746
-0.1489
0.0026
-0.2720
0.0269
-0.9029
0.2431
1.1643
0.1477
0.2033
0.0927
-0.0185
0.2159
0.0251
0.1456
refined
0.2069
3.8407
-17.8632
X-RAY DIFFRACTION
3.9092
6.8369
2.9006
17.3001
5.7377
2.2350
0.3899
0.3427
-0.1489
-0.0903
-0.2981
-0.0212
0.2012
0.1457
-0.0918
0.4885
0.2464
-0.0189
0.2154
-0.0095
0.0825
refined
-3.5104
-8.4679
-21.4501
X-RAY DIFFRACTION
4.3781
-1.3042
1.4951
4.1504
0.9608
8.2432
0.5167
0.4287
-0.6633
-0.6583
-0.2935
0.3139
0.6533
-0.1710
-0.2232
0.4107
0.1657
-0.1952
0.1270
-0.0939
0.2421
refined
-7.5447
-19.2809
-20.8583
X-RAY DIFFRACTION
5.6948
0.5206
3.3116
4.9281
0.4132
5.5534
0.3688
-0.2955
-0.8466
-0.0854
-0.0315
0.6435
0.8578
-0.4953
-0.3373
0.3148
-0.0016
-0.0973
0.1380
0.0399
0.3500
refined
-13.2803
-20.4962
-10.9129
X-RAY DIFFRACTION
3.5845
-1.2156
-0.8434
4.2428
1.3841
8.3659
0.3609
0.3778
-0.3605
-0.6414
-0.2045
0.4533
0.3530
-0.2752
-0.1563
0.2588
0.1046
-0.1990
0.1189
-0.0420
0.2537
refined
-14.9797
-11.5992
-18.8276
X-RAY DIFFRACTION
10.2794
7.5959
11.8701
6.2796
6.9911
19.8619
-0.1388
-0.6876
1.2606
0.0147
-0.6473
1.3205
0.0803
-0.4928
0.7860
0.1501
0.0715
0.1236
0.1628
-0.0843
0.5367
refined
-10.6577
-3.8271
-1.8767
X-RAY DIFFRACTION
A
0
A
5
X-RAY DIFFRACTION
1
A
6
A
16
X-RAY DIFFRACTION
2
A
17
A
40
X-RAY DIFFRACTION
3
A
41
A
63
X-RAY DIFFRACTION
4
A
64
A
78
X-RAY DIFFRACTION
5
A
79
A
89
X-RAY DIFFRACTION
6
B
0
B
5
X-RAY DIFFRACTION
7
B
6
B
16
X-RAY DIFFRACTION
8
B
17
B
40
X-RAY DIFFRACTION
9
B
41
B
63
X-RAY DIFFRACTION
10
B
64
B
78
X-RAY DIFFRACTION
11
B
79
B
89
X-RAY DIFFRACTION
12
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
4
tetrameric
3590
-87
9480
8470
-184
17660
B
ASP
61
B
OD1
ASP
62
1_555
B
CA
93
G
CA
CA
1_555
B
GLU
67
B
O
GLU
68
1_555
92.3
B
ASP
61
B
OD1
ASP
62
1_555
B
CA
93
G
CA
CA
1_555
B
ASP
65
B
OD1
ASP
66
1_555
94.5
B
GLU
67
B
O
GLU
68
1_555
B
CA
93
G
CA
CA
1_555
B
ASP
65
B
OD1
ASP
66
1_555
79.4
B
ASP
61
B
OD1
ASP
62
1_555
B
CA
93
G
CA
CA
1_555
B
GLU
72
B
OE1
GLU
73
1_555
106.8
B
GLU
67
B
O
GLU
68
1_555
B
CA
93
G
CA
CA
1_555
B
GLU
72
B
OE1
GLU
73
1_555
77.7
B
ASP
65
B
OD1
ASP
66
1_555
B
CA
93
G
CA
CA
1_555
B
GLU
72
B
OE1
GLU
73
1_555
149.1
B
ASP
61
B
OD1
ASP
62
1_555
B
CA
93
G
CA
CA
1_555
B
ASP
63
B
OD1
ASP
64
1_555
76.2
B
GLU
67
B
O
GLU
68
1_555
B
CA
93
G
CA
CA
1_555
B
ASP
63
B
OD1
ASP
64
1_555
159.8
B
ASP
65
B
OD1
ASP
66
1_555
B
CA
93
G
CA
CA
1_555
B
ASP
63
B
OD1
ASP
64
1_555
84.9
B
GLU
72
B
OE1
GLU
73
1_555
B
CA
93
G
CA
CA
1_555
B
ASP
63
B
OD1
ASP
64
1_555
121.3
B
ASP
61
B
OD1
ASP
62
1_555
B
CA
93
G
CA
CA
1_555
B
GLU
72
B
OE2
GLU
73
1_555
82.4
B
GLU
67
B
O
GLU
68
1_555
B
CA
93
G
CA
CA
1_555
B
GLU
72
B
OE2
GLU
73
1_555
122.9
B
ASP
65
B
OD1
ASP
66
1_555
B
CA
93
G
CA
CA
1_555
B
GLU
72
B
OE2
GLU
73
1_555
157.5
B
GLU
72
B
OE1
GLU
73
1_555
B
CA
93
G
CA
CA
1_555
B
GLU
72
B
OE2
GLU
73
1_555
50.8
B
ASP
63
B
OD1
ASP
64
1_555
B
CA
93
G
CA
CA
1_555
B
GLU
72
B
OE2
GLU
73
1_555
72.7
B
ASP
61
B
OD1
ASP
62
1_555
B
CA
93
G
CA
CA
1_555
B
HOH
112
J
O
HOH
1_555
166.3
B
GLU
67
B
O
GLU
68
1_555
B
CA
93
G
CA
CA
1_555
B
HOH
112
J
O
HOH
1_555
92.4
B
ASP
65
B
OD1
ASP
66
1_555
B
CA
93
G
CA
CA
1_555
B
HOH
112
J
O
HOH
1_555
73.8
B
GLU
72
B
OE1
GLU
73
1_555
B
CA
93
G
CA
CA
1_555
B
HOH
112
J
O
HOH
1_555
86.7
B
ASP
63
B
OD1
ASP
64
1_555
B
CA
93
G
CA
CA
1_555
B
HOH
112
J
O
HOH
1_555
95.4
B
GLU
72
B
OE2
GLU
73
1_555
B
CA
93
G
CA
CA
1_555
B
HOH
112
J
O
HOH
1_555
105.7
A
ASP
63
A
OD1
ASP
64
1_555
A
CA
93
D
CA
CA
1_555
A
GLU
67
A
O
GLU
68
1_555
162.0
A
ASP
63
A
OD1
ASP
64
1_555
A
CA
93
D
CA
CA
1_555
A
ASP
61
A
OD1
ASP
62
1_555
83.1
A
GLU
67
A
O
GLU
68
1_555
A
CA
93
D
CA
CA
1_555
A
ASP
61
A
OD1
ASP
62
1_555
87.4
A
ASP
63
A
OD1
ASP
64
1_555
A
CA
93
D
CA
CA
1_555
A
ASP
65
A
OD1
ASP
66
1_555
82.8
A
GLU
67
A
O
GLU
68
1_555
A
CA
93
D
CA
CA
1_555
A
ASP
65
A
OD1
ASP
66
1_555
81.3
A
ASP
61
A
OD1
ASP
62
1_555
A
CA
93
D
CA
CA
1_555
A
ASP
65
A
OD1
ASP
66
1_555
85.7
A
ASP
63
A
OD1
ASP
64
1_555
A
CA
93
D
CA
CA
1_555
A
GLU
72
A
OE1
GLU
73
1_555
120.3
A
GLU
67
A
O
GLU
68
1_555
A
CA
93
D
CA
CA
1_555
A
GLU
72
A
OE1
GLU
73
1_555
77.4
A
ASP
61
A
OD1
ASP
62
1_555
A
CA
93
D
CA
CA
1_555
A
GLU
72
A
OE1
GLU
73
1_555
110.9
A
ASP
65
A
OD1
ASP
66
1_555
A
CA
93
D
CA
CA
1_555
A
GLU
72
A
OE1
GLU
73
1_555
152.1
A
ASP
63
A
OD1
ASP
64
1_555
A
CA
93
D
CA
CA
1_555
A
GLU
72
A
OE2
GLU
73
1_555
73.5
A
GLU
67
A
O
GLU
68
1_555
A
CA
93
D
CA
CA
1_555
A
GLU
72
A
OE2
GLU
73
1_555
122.1
A
ASP
61
A
OD1
ASP
62
1_555
A
CA
93
D
CA
CA
1_555
A
GLU
72
A
OE2
GLU
73
1_555
91.5
A
ASP
65
A
OD1
ASP
66
1_555
A
CA
93
D
CA
CA
1_555
A
GLU
72
A
OE2
GLU
73
1_555
156.3
A
GLU
72
A
OE1
GLU
73
1_555
A
CA
93
D
CA
CA
1_555
A
GLU
72
A
OE2
GLU
73
1_555
49.4
A
ASP
63
A
OD1
ASP
64
1_555
A
CA
93
D
CA
CA
1_555
A
HOH
147
I
O
HOH
1_555
85.0
A
GLU
67
A
O
GLU
68
1_555
A
CA
93
D
CA
CA
1_555
A
HOH
147
I
O
HOH
1_555
100.7
A
ASP
61
A
OD1
ASP
62
1_555
A
CA
93
D
CA
CA
1_555
A
HOH
147
I
O
HOH
1_555
163.0
A
ASP
65
A
OD1
ASP
66
1_555
A
CA
93
D
CA
CA
1_555
A
HOH
147
I
O
HOH
1_555
80.8
A
GLU
72
A
OE1
GLU
73
1_555
A
CA
93
D
CA
CA
1_555
A
HOH
147
I
O
HOH
1_555
85.6
A
GLU
72
A
OE2
GLU
73
1_555
A
CA
93
D
CA
CA
1_555
A
HOH
147
I
O
HOH
1_555
96.6
B
SER
18
B
O
SER
19
1_555
B
CA
92
F
CA
CA
1_555
B
LYS
26
B
O
LYS
27
1_555
94.6
B
SER
18
B
O
SER
19
1_555
B
CA
92
F
CA
CA
1_555
B
GLU
21
B
O
GLU
22
1_555
96.6
B
LYS
26
B
O
LYS
27
1_555
B
CA
92
F
CA
CA
1_555
B
GLU
21
B
O
GLU
22
1_555
159.9
B
SER
18
B
O
SER
19
1_555
B
CA
92
F
CA
CA
1_555
B
ASP
23
B
O
ASP
24
1_555
79.4
B
LYS
26
B
O
LYS
27
1_555
B
CA
92
F
CA
CA
1_555
B
ASP
23
B
O
ASP
24
1_555
82.6
B
GLU
21
B
O
GLU
22
1_555
B
CA
92
F
CA
CA
1_555
B
ASP
23
B
O
ASP
24
1_555
83.1
B
SER
18
B
O
SER
19
1_555
B
CA
92
F
CA
CA
1_555
B
GLU
31
B
OE1
GLU
32
1_555
103.6
B
LYS
26
B
O
LYS
27
1_555
B
CA
92
F
CA
CA
1_555
B
GLU
31
B
OE1
GLU
32
1_555
79.6
B
GLU
21
B
O
GLU
22
1_555
B
CA
92
F
CA
CA
1_555
B
GLU
31
B
OE1
GLU
32
1_555
113.7
B
ASP
23
B
O
ASP
24
1_555
B
CA
92
F
CA
CA
1_555
B
GLU
31
B
OE1
GLU
32
1_555
162.1
B
SER
18
B
O
SER
19
1_555
B
CA
92
F
CA
CA
1_555
B
GLU
31
B
OE2
GLU
32
1_555
81.2
B
LYS
26
B
O
LYS
27
1_555
B
CA
92
F
CA
CA
1_555
B
GLU
31
B
OE2
GLU
32
1_555
125.9
B
GLU
21
B
O
GLU
22
1_555
B
CA
92
F
CA
CA
1_555
B
GLU
31
B
OE2
GLU
32
1_555
72.6
B
ASP
23
B
O
ASP
24
1_555
B
CA
92
F
CA
CA
1_555
B
GLU
31
B
OE2
GLU
32
1_555
146.7
B
GLU
31
B
OE1
GLU
32
1_555
B
CA
92
F
CA
CA
1_555
B
GLU
31
B
OE2
GLU
32
1_555
50.2
B
SER
18
B
O
SER
19
1_555
B
CA
92
F
CA
CA
1_555
B
HOH
129
J
O
HOH
1_555
174.0
B
LYS
26
B
O
LYS
27
1_555
B
CA
92
F
CA
CA
1_555
B
HOH
129
J
O
HOH
1_555
83.8
B
GLU
21
B
O
GLU
22
1_555
B
CA
92
F
CA
CA
1_555
B
HOH
129
J
O
HOH
1_555
83.3
B
ASP
23
B
O
ASP
24
1_555
B
CA
92
F
CA
CA
1_555
B
HOH
129
J
O
HOH
1_555
94.6
B
GLU
31
B
OE1
GLU
32
1_555
B
CA
92
F
CA
CA
1_555
B
HOH
129
J
O
HOH
1_555
81.8
B
GLU
31
B
OE2
GLU
32
1_555
B
CA
92
F
CA
CA
1_555
B
HOH
129
J
O
HOH
1_555
104.4
A
SER
18
A
O
SER
19
1_555
A
CA
92
C
CA
CA
1_555
A
ASP
23
A
O
ASP
24
1_555
82.6
A
SER
18
A
O
SER
19
1_555
A
CA
92
C
CA
CA
1_555
A
LYS
26
A
O
LYS
27
1_555
89.5
A
ASP
23
A
O
ASP
24
1_555
A
CA
92
C
CA
CA
1_555
A
LYS
26
A
O
LYS
27
1_555
80.8
A
SER
18
A
O
SER
19
1_555
A
CA
92
C
CA
CA
1_555
A
GLU
21
A
O
GLU
22
1_555
99.7
A
ASP
23
A
O
ASP
24
1_555
A
CA
92
C
CA
CA
1_555
A
GLU
21
A
O
GLU
22
1_555
83.9
A
LYS
26
A
O
LYS
27
1_555
A
CA
92
C
CA
CA
1_555
A
GLU
21
A
O
GLU
22
1_555
161.0
A
SER
18
A
O
SER
19
1_555
A
CA
92
C
CA
CA
1_555
A
GLU
31
A
OE2
GLU
32
1_555
79.3
A
ASP
23
A
O
ASP
24
1_555
A
CA
92
C
CA
CA
1_555
A
GLU
31
A
OE2
GLU
32
1_555
149.5
A
LYS
26
A
O
LYS
27
1_555
A
CA
92
C
CA
CA
1_555
A
GLU
31
A
OE2
GLU
32
1_555
123.1
A
GLU
21
A
O
GLU
22
1_555
A
CA
92
C
CA
CA
1_555
A
GLU
31
A
OE2
GLU
32
1_555
75.3
A
SER
18
A
O
SER
19
1_555
A
CA
92
C
CA
CA
1_555
A
GLU
31
A
OE1
GLU
32
1_555
101.8
A
ASP
23
A
O
ASP
24
1_555
A
CA
92
C
CA
CA
1_555
A
GLU
31
A
OE1
GLU
32
1_555
156.9
A
LYS
26
A
O
LYS
27
1_555
A
CA
92
C
CA
CA
1_555
A
GLU
31
A
OE1
GLU
32
1_555
76.6
A
GLU
21
A
O
GLU
22
1_555
A
CA
92
C
CA
CA
1_555
A
GLU
31
A
OE1
GLU
32
1_555
117.1
A
GLU
31
A
OE2
GLU
32
1_555
A
CA
92
C
CA
CA
1_555
A
GLU
31
A
OE1
GLU
32
1_555
52.4
A
SER
18
A
O
SER
19
1_555
A
CA
92
C
CA
CA
1_555
A
HOH
104
I
O
HOH
1_555
168.9
A
ASP
23
A
O
ASP
24
1_555
A
CA
92
C
CA
CA
1_555
A
HOH
104
I
O
HOH
1_555
87.6
A
LYS
26
A
O
LYS
27
1_555
A
CA
92
C
CA
CA
1_555
A
HOH
104
I
O
HOH
1_555
83.7
A
GLU
21
A
O
GLU
22
1_555
A
CA
92
C
CA
CA
1_555
A
HOH
104
I
O
HOH
1_555
84.5
A
GLU
31
A
OE2
GLU
32
1_555
A
CA
92
C
CA
CA
1_555
A
HOH
104
I
O
HOH
1_555
111.7
A
GLU
31
A
OE1
GLU
32
1_555
A
CA
92
C
CA
CA
1_555
A
HOH
104
I
O
HOH
1_555
85.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1
A
HIS
90
A
HIS
91
1
Y
1
A
GLU
91
A
GLU
92
1
Y
1
B
HIS
90
B
HIS
91
1
Y
1
B
GLU
91
B
GLU
92
1
Y
1
12.51
1.70
111.00
123.51
B
B
B
CB
CG
CD2
LEU
LEU
LEU
3
3
3
N
1
A
A
CE1
CZ
PHE
PHE
70
70
0.123
0.019
1.369
1.492
N
37.230
34.204
2.000
0.6500
0.3300
0.0000
0.6500
0.0000
-0.9800
0.9570
0.9500
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY
0.2314
0.1955
0.1973
1.8500
57.4500
982
18154
19136
5.1000
99.2500
0.2389
0.1925
1.000
0.500
0.8402
6.2620
0.1010
0.1395
0.1327
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1400
0.1320
0.8000
0.8000
1.4000
MAXIMUM LIKELIHOOD
MASK
1.8500
57.4500
123
1631
54
0
1454
0.024
0.022
1568
2.461
2.005
2117
4.931
5.000
188
28.007
26.585
82
16.694
15.000
301
17.470
15.000
2
0.374
0.200
231
0.013
0.020
1170
1.063
1.500
905
1.656
2.000
1458
2.962
3.000
663
4.158
4.500
654
0.2770
0.2660
1.8940
62
1202
1264
20
92.8000
1.850
50.000
3LLE
19198
0.055
1.033
1
11.900
9.600
99.400
0.519
1.85
1.92
1808
0.942
6.40
96.00
0.400
1.92
1.99
1847
0.996
8.40
99.90
0.262
1.99
2.08
1908
0.980
9.60
100.00
0.185
2.08
2.19
1890
1.002
10.00
100.00
0.137
2.19
2.33
1909
1.069
10.10
100.00
0.110
2.33
2.51
1903
1.107
10.30
100.00
0.076
2.51
2.76
1930
1.036
10.60
100.00
0.053
2.76
3.16
1933
0.983
10.70
100.00
0.038
3.16
3.99
1974
1.032
10.50
99.90
0.030
3.99
50.00
2096
1.135
9.60
98.40
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Tue Nov 14 15:28:12 2006
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
1.3.3
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.005
Protein S100-B
X-ray structure of bovine SC0322,Ca(2+)-S100B
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
SER
1
A
SER
2
HELX_P
A
GLY
19
A
GLY
20
1
1
19
A
LYS
28
A
LYS
29
HELX_P
A
LEU
40
A
LEU
41
1
2
13
A
GLU
49
A
GLU
50
HELX_P
A
ASP
61
A
ASP
62
1
3
13
A
ASP
69
A
ASP
70
HELX_P
A
THR
81
A
THR
82
1
4
13
A
THR
82
A
THR
83
HELX_P
A
GLU
89
A
GLU
90
5
5
8
B
SER
1
B
SER
2
HELX_P
B
GLY
19
B
GLY
20
1
6
19
B
LYS
28
B
LYS
29
HELX_P
B
LEU
40
B
LEU
41
1
7
13
B
GLU
49
B
GLU
50
HELX_P
B
ASP
61
B
ASP
62
1
8
13
B
ASP
69
B
ASP
70
HELX_P
B
THR
81
B
THR
82
1
9
13
B
CYS
84
B
CYS
85
HELX_P
B
GLU
89
B
GLU
90
1
10
6
metalc
2.117
B
ASP
61
B
OD1
ASP
62
1_555
B
CA
93
G
CA
CA
1_555
metalc
2.208
A
ASP
63
A
OD1
ASP
64
1_555
A
CA
93
D
CA
CA
1_555
metalc
2.267
B
SER
18
B
O
SER
19
1_555
B
CA
92
F
CA
CA
1_555
metalc
2.288
A
SER
18
A
O
SER
19
1_555
A
CA
92
C
CA
CA
1_555
metalc
2.310
A
GLU
67
A
O
GLU
68
1_555
A
CA
93
D
CA
CA
1_555
metalc
2.314
B
GLU
67
B
O
GLU
68
1_555
B
CA
93
G
CA
CA
1_555
metalc
2.338
A
ASP
61
A
OD1
ASP
62
1_555
A
CA
93
D
CA
CA
1_555
metalc
2.352
A
ASP
65
A
OD1
ASP
66
1_555
A
CA
93
D
CA
CA
1_555
metalc
2.362
B
LYS
26
B
O
LYS
27
1_555
B
CA
92
F
CA
CA
1_555
metalc
2.364
B
ASP
65
B
OD1
ASP
66
1_555
B
CA
93
G
CA
CA
1_555
metalc
2.385
A
ASP
23
A
O
ASP
24
1_555
A
CA
92
C
CA
CA
1_555
metalc
2.388
A
LYS
26
A
O
LYS
27
1_555
A
CA
92
C
CA
CA
1_555
metalc
2.392
B
GLU
21
B
O
GLU
22
1_555
B
CA
92
F
CA
CA
1_555
metalc
2.405
A
GLU
21
A
O
GLU
22
1_555
A
CA
92
C
CA
CA
1_555
metalc
2.418
A
GLU
31
A
OE2
GLU
32
1_555
A
CA
92
C
CA
CA
1_555
metalc
2.434
B
ASP
23
B
O
ASP
24
1_555
B
CA
92
F
CA
CA
1_555
metalc
2.481
A
GLU
31
A
OE1
GLU
32
1_555
A
CA
92
C
CA
CA
1_555
metalc
2.484
B
GLU
72
B
OE1
GLU
73
1_555
B
CA
93
G
CA
CA
1_555
metalc
2.501
A
GLU
72
A
OE1
GLU
73
1_555
A
CA
93
D
CA
CA
1_555
metalc
2.522
B
ASP
63
B
OD1
ASP
64
1_555
B
CA
93
G
CA
CA
1_555
metalc
2.545
B
GLU
31
B
OE1
GLU
32
1_555
B
CA
92
F
CA
CA
1_555
metalc
2.553
B
GLU
31
B
OE2
GLU
32
1_555
B
CA
92
F
CA
CA
1_555
metalc
2.590
B
GLU
72
B
OE2
GLU
73
1_555
B
CA
93
G
CA
CA
1_555
metalc
2.686
A
GLU
72
A
OE2
GLU
73
1_555
A
CA
93
D
CA
CA
1_555
covale
1.765
A
CYS
84
A
SG
CYS
85
1_555
A
SGE
94
E
CAG
SGE
1_555
covale
1.893
B
CYS
84
B
SG
CYS
85
1_555
B
SGE
94
H
CAG
SGE
1_555
metalc
2.040
B
CA
92
F
CA
CA
1_555
B
HOH
129
J
O
HOH
1_555
metalc
2.188
B
CA
93
G
CA
CA
1_555
B
HOH
112
J
O
HOH
1_555
metalc
2.328
A
CA
92
C
CA
CA
1_555
A
HOH
104
I
O
HOH
1_555
metalc
2.372
A
CA
93
D
CA
CA
1_555
A
HOH
147
I
O
HOH
1_555
METAL BINDING PROTEIN
EF hand, Alpha helical, Metal-binding, Nucleus, METAL BINDING PROTEIN
S100B_BOVIN
UNP
1
1
P02638
MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM
ITTACHEFFEHE
1
92
3LLE
0
91
P02638
A
1
1
92
1
92
3LLE
0
91
P02638
B
1
1
92
BINDING SITE FOR RESIDUE CA A 92
Software
6
BINDING SITE FOR RESIDUE CA A 93
Software
6
BINDING SITE FOR RESIDUE SGE A 94
Software
8
BINDING SITE FOR RESIDUE CA B 92
Software
6
BINDING SITE FOR RESIDUE CA B 93
Software
6
BINDING SITE FOR RESIDUE SGE B 94
Software
7
A
SER
18
A
SER
19
6
1_555
A
GLU
21
A
GLU
22
6
1_555
A
ASP
23
A
ASP
24
6
1_555
A
LYS
26
A
LYS
27
6
1_555
A
GLU
31
A
GLU
32
6
1_555
A
HOH
104
I
HOH
6
1_555
A
ASP
61
A
ASP
62
6
1_555
A
ASP
63
A
ASP
64
6
1_555
A
ASP
65
A
ASP
66
6
1_555
A
GLU
67
A
GLU
68
6
1_555
A
GLU
72
A
GLU
73
6
1_555
A
HOH
147
I
HOH
6
1_555
A
HIS
42
A
HIS
43
8
6_554
A
HIS
42
A
HIS
43
8
1_555
A
PHE
43
A
PHE
44
8
1_555
A
ALA
83
A
ALA
84
8
1_555
A
CYS
84
A
CYS
85
8
1_555
A
PHE
87
A
PHE
88
8
1_555
A
PHE
88
A
PHE
89
8
1_555
B
VAL
8
B
VAL
9
8
1_555
B
SER
18
B
SER
19
6
1_555
B
GLU
21
B
GLU
22
6
1_555
B
ASP
23
B
ASP
24
6
1_555
B
LYS
26
B
LYS
27
6
1_555
B
GLU
31
B
GLU
32
6
1_555
B
HOH
129
J
HOH
6
1_555
B
ASP
61
B
ASP
62
6
1_555
B
ASP
63
B
ASP
64
6
1_555
B
ASP
65
B
ASP
66
6
1_555
B
GLU
67
B
GLU
68
6
1_555
B
GLU
72
B
GLU
73
6
1_555
B
HOH
112
J
HOH
6
1_555
A
VAL
8
A
VAL
9
7
1_555
B
HIS
42
B
HIS
43
7
1_555
B
PHE
43
B
PHE
44
7
1_555
B
CYS
84
B
CYS
85
7
1_555
B
PHE
87
B
PHE
88
7
1_555
B
PHE
87
B
PHE
88
7
4_555
B
PHE
88
B
PHE
89
7
1_555
154
P 32 2 1