0.011993
0.000000
0.000000
0.000000
0.011993
0.000000
0.000000
0.000000
0.008673
0.00000
0.00000
0.00000
Ugochukwu, E.
Soundararajan, M.
Rellos, P.
Fedorov, O.
Phillips, C.
Wang, J.
Hapka, E.
Filippakopoulos, P.
Chaikuad, A.
Pike, A.C.W.
Carpenter, L.
Vollmar, M.
von Delft, F.
Bountra, C.
Arrowsmith, C.H.
Weigelt, J.
Edwards, A.
Knapp, S.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
83.380
83.380
115.300
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C15 H10 O7
302.236
3,5,7,3',4'-PENTAHYDROXYFLAVONE
QUERCETIN
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
O
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
O
N
310
N
O
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
O
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
R
C
N
341
N
O
N
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
N
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
N
391
N
O
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
N
N
405
S
C
N
406
N
C
N
407
N
O
N
408
N
C
N
409
N
C
N
410
N
C
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
Y
277
N
doub
Y
278
N
sing
N
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
doub
Y
283
N
sing
Y
284
N
sing
Y
285
N
sing
Y
286
N
doub
N
287
N
sing
N
288
N
sing
Y
289
N
sing
N
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
Y
294
N
sing
Y
295
N
doub
Y
296
N
sing
Y
297
N
sing
N
298
N
sing
Y
299
N
doub
N
300
N
sing
Y
301
N
sing
N
302
N
sing
Y
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
doub
Y
356
N
sing
Y
357
N
sing
N
358
N
sing
Y
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
Y
379
N
doub
Y
380
N
sing
Y
381
N
sing
N
382
N
sing
Y
383
N
doub
N
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
63
14626
14646
10.1021/acs.jmedchem.0c01174
33215924
A Chemical Probe for Dark Kinase STK17B Derives Its Potency and High Selectivity through a Unique P-Loop Conformation.
2020
0000-0003-1120-2209
0000-0003-4799-6792
0000-0002-9836-0068
0000-0002-9535-8528
0000-0001-9331-0427
0000-0001-5995-6494
0000-0001-5973-5798
0000-0003-4181-8223
10.2210/pdb3lm5/pdb
pdb_00003lm5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2009-12-17
MAR225
SINGLE WAVELENGTH
M
x-ray
1
0.98
1.0
I02
Diamond
0.98
SYNCHROTRON
DIAMOND BEAMLINE I02
37327.086
Serine/threonine-protein kinase 17B
2.7.11.1
STK17B
1
man
polymer
302.236
3,5,7,3',4'-PENTAHYDROXYFLAVONE
1
syn
non-polymer
18.015
water
118
nat
water
DAP kinase-related apoptosis-inducing protein kinase 2
no
no
MHHHHHHSSGVDLGTENLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIA
VLELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQ
NILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQE
TYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWLQQWDFENLFHPEETSSSSQTQDHSVRSSE
DKTSKSS
MHHHHHHSSGVDLGTENLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIA
VLELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQ
NILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQE
TYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWLQQWDFENLFHPEETSSSSQTQDHSVRSSE
DKTSKSS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
DRAK2, STK17B
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)-R3-pRARE2
pNIC28-Bsa4
1
2.68
54.18
VAPOR DIFFUSION, SITTING DROP
5.5
0.2M NaCl; 0.1M BIS-TRIS pH 5.5; 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Structural Genomics Consortium
SGC
software
citation
citation_author
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Advisory
Version format compliance
Refinement description
Database references
Derived calculations
Data collection
Database references
Refinement description
1
0
2010-03-16
1
1
2011-07-13
1
2
2017-11-01
1
3
2021-01-13
1
4
2023-09-06
_software.name
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Crystal structure of death associated protein kinase complexed with AMPPNP
Y
RCSB
Y
RCSB
2010-01-29
REL
REL
QUE
3,5,7,3',4'-PENTAHYDROXYFLAVONE
HOH
water
3EHA
PDB entry 3EHA
PDB
experimental model
QUE
1
2
QUE
QUE
1
A
HOH
2
3
HOH
HOH
2
A
HOH
1
3
HOH
HOH
330
A
HOH
3
3
HOH
HOH
331
A
HOH
4
3
HOH
HOH
332
A
HOH
6
3
HOH
HOH
333
A
HOH
7
3
HOH
HOH
334
A
HOH
8
3
HOH
HOH
335
A
HOH
9
3
HOH
HOH
336
A
HOH
10
3
HOH
HOH
337
A
HOH
11
3
HOH
HOH
338
A
HOH
12
3
HOH
HOH
339
A
HOH
13
3
HOH
HOH
340
A
HOH
14
3
HOH
HOH
341
A
HOH
15
3
HOH
HOH
342
A
HOH
16
3
HOH
HOH
343
A
HOH
17
3
HOH
HOH
344
A
HOH
18
3
HOH
HOH
345
A
HOH
19
3
HOH
HOH
346
A
HOH
20
3
HOH
HOH
347
A
HOH
21
3
HOH
HOH
348
A
HOH
22
3
HOH
HOH
349
A
HOH
23
3
HOH
HOH
350
A
HOH
25
3
HOH
HOH
351
A
HOH
26
3
HOH
HOH
352
A
HOH
27
3
HOH
HOH
353
A
HOH
28
3
HOH
HOH
354
A
HOH
29
3
HOH
HOH
355
A
HOH
30
3
HOH
HOH
356
A
HOH
31
3
HOH
HOH
357
A
HOH
32
3
HOH
HOH
358
A
HOH
33
3
HOH
HOH
359
A
HOH
34
3
HOH
HOH
360
A
HOH
35
3
HOH
HOH
361
A
HOH
36
3
HOH
HOH
362
A
HOH
37
3
HOH
HOH
363
A
HOH
39
3
HOH
HOH
364
A
HOH
40
3
HOH
HOH
365
A
HOH
41
3
HOH
HOH
366
A
HOH
42
3
HOH
HOH
367
A
HOH
43
3
HOH
HOH
368
A
HOH
44
3
HOH
HOH
369
A
HOH
45
3
HOH
HOH
370
A
HOH
46
3
HOH
HOH
371
A
HOH
47
3
HOH
HOH
372
A
HOH
48
3
HOH
HOH
373
A
HOH
49
3
HOH
HOH
374
A
HOH
50
3
HOH
HOH
375
A
HOH
51
3
HOH
HOH
376
A
HOH
52
3
HOH
HOH
377
A
HOH
53
3
HOH
HOH
378
A
HOH
54
3
HOH
HOH
379
A
HOH
55
3
HOH
HOH
380
A
HOH
56
3
HOH
HOH
381
A
HOH
57
3
HOH
HOH
382
A
HOH
58
3
HOH
HOH
383
A
HOH
59
3
HOH
HOH
384
A
HOH
60
3
HOH
HOH
385
A
HOH
61
3
HOH
HOH
386
A
HOH
62
3
HOH
HOH
387
A
HOH
63
3
HOH
HOH
388
A
HOH
65
3
HOH
HOH
389
A
HOH
66
3
HOH
HOH
390
A
HOH
67
3
HOH
HOH
391
A
HOH
68
3
HOH
HOH
392
A
HOH
69
3
HOH
HOH
393
A
HOH
70
3
HOH
HOH
394
A
HOH
71
3
HOH
HOH
395
A
HOH
72
3
HOH
HOH
396
A
HOH
73
3
HOH
HOH
397
A
HOH
74
3
HOH
HOH
398
A
HOH
75
3
HOH
HOH
399
A
HOH
76
3
HOH
HOH
400
A
HOH
78
3
HOH
HOH
401
A
HOH
79
3
HOH
HOH
402
A
HOH
80
3
HOH
HOH
403
A
HOH
81
3
HOH
HOH
404
A
HOH
82
3
HOH
HOH
405
A
HOH
83
3
HOH
HOH
406
A
HOH
84
3
HOH
HOH
407
A
HOH
85
3
HOH
HOH
408
A
HOH
86
3
HOH
HOH
409
A
HOH
87
3
HOH
HOH
410
A
HOH
88
3
HOH
HOH
411
A
HOH
89
3
HOH
HOH
412
A
HOH
90
3
HOH
HOH
413
A
HOH
91
3
HOH
HOH
414
A
HOH
92
3
HOH
HOH
415
A
HOH
93
3
HOH
HOH
416
A
HOH
94
3
HOH
HOH
417
A
HOH
96
3
HOH
HOH
418
A
HOH
97
3
HOH
HOH
419
A
HOH
99
3
HOH
HOH
420
A
HOH
100
3
HOH
HOH
421
A
HOH
101
3
HOH
HOH
422
A
HOH
102
3
HOH
HOH
423
A
HOH
103
3
HOH
HOH
424
A
HOH
104
3
HOH
HOH
425
A
HOH
105
3
HOH
HOH
426
A
HOH
106
3
HOH
HOH
427
A
HOH
107
3
HOH
HOH
428
A
HOH
108
3
HOH
HOH
429
A
HOH
109
3
HOH
HOH
430
A
HOH
110
3
HOH
HOH
431
A
HOH
111
3
HOH
HOH
432
A
HOH
112
3
HOH
HOH
433
A
HOH
113
3
HOH
HOH
434
A
HOH
114
3
HOH
HOH
435
A
HOH
115
3
HOH
HOH
436
A
HOH
116
3
HOH
HOH
437
A
HOH
117
3
HOH
HOH
438
A
HOH
118
3
HOH
HOH
439
A
HOH
119
3
HOH
HOH
440
A
HOH
120
3
HOH
HOH
441
A
HOH
121
3
HOH
HOH
442
A
HOH
122
3
HOH
HOH
443
A
HOH
123
3
HOH
HOH
444
A
HOH
124
3
HOH
HOH
445
A
HOH
125
3
HOH
HOH
446
A
n
1
3
A
n
2
4
A
n
3
5
A
n
4
6
A
n
5
7
A
n
6
8
A
n
7
9
A
n
8
10
A
n
9
11
A
n
10
12
A
n
11
13
A
n
12
14
A
n
13
15
A
n
14
16
A
n
15
17
A
GLU
18
n
16
GLU
18
A
ASN
19
n
17
ASN
19
A
LEU
20
n
18
LEU
20
A
TYR
21
n
19
TYR
21
A
PHE
22
n
20
PHE
22
A
GLN
23
n
21
GLN
23
A
SER
24
n
22
SER
24
A
MET
25
n
23
MET
25
A
GLU
26
n
24
GLU
26
A
ASN
27
n
25
ASN
27
A
PHE
28
n
26
PHE
28
A
ASN
29
n
27
ASN
29
A
ASN
30
n
28
ASN
30
A
PHE
31
n
29
PHE
31
A
TYR
32
n
30
TYR
32
A
ILE
33
n
31
ILE
33
A
LEU
34
n
32
LEU
34
A
THR
35
n
33
THR
35
A
SER
36
n
34
SER
36
A
LYS
37
n
35
LYS
37
A
GLU
38
n
36
GLU
38
A
LEU
39
n
37
LEU
39
A
GLY
40
n
38
GLY
40
A
ARG
41
n
39
ARG
41
A
GLY
42
n
40
GLY
42
A
LYS
43
n
41
LYS
43
A
PHE
44
n
42
PHE
44
A
ALA
45
n
43
ALA
45
A
VAL
46
n
44
VAL
46
A
VAL
47
n
45
VAL
47
A
ARG
48
n
46
ARG
48
A
GLN
49
n
47
GLN
49
A
CYS
50
n
48
CYS
50
A
ILE
51
n
49
ILE
51
A
SER
52
n
50
SER
52
A
LYS
53
n
51
LYS
53
A
SER
54
n
52
SER
54
A
THR
55
n
53
THR
55
A
GLY
56
n
54
GLY
56
A
GLN
57
n
55
GLN
57
A
GLU
58
n
56
GLU
58
A
TYR
59
n
57
TYR
59
A
ALA
60
n
58
ALA
60
A
ALA
61
n
59
ALA
61
A
LYS
62
n
60
LYS
62
A
PHE
63
n
61
PHE
63
A
LEU
64
n
62
LEU
64
A
LYS
65
n
63
LYS
65
A
LYS
66
n
64
LYS
66
A
ARG
67
n
65
ARG
67
A
ARG
68
n
66
ARG
68
A
ARG
69
n
67
ARG
69
A
GLY
70
n
68
GLY
70
A
GLN
71
n
69
GLN
71
A
ASP
72
n
70
ASP
72
A
CYS
73
n
71
CYS
73
A
ARG
74
n
72
ARG
74
A
ALA
75
n
73
ALA
75
A
GLU
76
n
74
GLU
76
A
ILE
77
n
75
ILE
77
A
LEU
78
n
76
LEU
78
A
HIS
79
n
77
HIS
79
A
GLU
80
n
78
GLU
80
A
ILE
81
n
79
ILE
81
A
ALA
82
n
80
ALA
82
A
VAL
83
n
81
VAL
83
A
LEU
84
n
82
LEU
84
A
GLU
85
n
83
GLU
85
A
LEU
86
n
84
LEU
86
A
ALA
87
n
85
ALA
87
A
LYS
88
n
86
LYS
88
A
SER
89
n
87
SER
89
A
CYS
90
n
88
CYS
90
A
PRO
91
n
89
PRO
91
A
ARG
92
n
90
ARG
92
A
VAL
93
n
91
VAL
93
A
ILE
94
n
92
ILE
94
A
ASN
95
n
93
ASN
95
A
LEU
96
n
94
LEU
96
A
HIS
97
n
95
HIS
97
A
GLU
98
n
96
GLU
98
A
VAL
99
n
97
VAL
99
A
TYR
100
n
98
TYR
100
A
GLU
101
n
99
GLU
101
A
ASN
102
n
100
ASN
102
A
THR
103
n
101
THR
103
A
SER
104
n
102
SER
104
A
GLU
105
n
103
GLU
105
A
ILE
106
n
104
ILE
106
A
ILE
107
n
105
ILE
107
A
LEU
108
n
106
LEU
108
A
ILE
109
n
107
ILE
109
A
LEU
110
n
108
LEU
110
A
GLU
111
n
109
GLU
111
A
TYR
112
n
110
TYR
112
A
ALA
113
n
111
ALA
113
A
ALA
114
n
112
ALA
114
A
GLY
115
n
113
GLY
115
A
GLY
116
n
114
GLY
116
A
GLU
117
n
115
GLU
117
A
ILE
118
n
116
ILE
118
A
PHE
119
n
117
PHE
119
A
SER
120
n
118
SER
120
A
LEU
121
n
119
LEU
121
A
CYS
122
n
120
CYS
122
A
LEU
123
n
121
LEU
123
A
PRO
124
n
122
PRO
124
A
GLU
125
n
123
GLU
125
A
LEU
126
n
124
LEU
126
A
n
125
127
A
GLU
128
n
126
GLU
128
A
MET
129
n
127
MET
129
A
VAL
130
n
128
VAL
130
A
SER
131
n
129
SER
131
A
GLU
132
n
130
GLU
132
A
ASN
133
n
131
ASN
133
A
ASP
134
n
132
ASP
134
A
VAL
135
n
133
VAL
135
A
ILE
136
n
134
ILE
136
A
ARG
137
n
135
ARG
137
A
LEU
138
n
136
LEU
138
A
ILE
139
n
137
ILE
139
A
LYS
140
n
138
LYS
140
A
GLN
141
n
139
GLN
141
A
ILE
142
n
140
ILE
142
A
LEU
143
n
141
LEU
143
A
GLU
144
n
142
GLU
144
A
GLY
145
n
143
GLY
145
A
VAL
146
n
144
VAL
146
A
TYR
147
n
145
TYR
147
A
TYR
148
n
146
TYR
148
A
LEU
149
n
147
LEU
149
A
HIS
150
n
148
HIS
150
A
GLN
151
n
149
GLN
151
A
ASN
152
n
150
ASN
152
A
ASN
153
n
151
ASN
153
A
ILE
154
n
152
ILE
154
A
VAL
155
n
153
VAL
155
A
HIS
156
n
154
HIS
156
A
LEU
157
n
155
LEU
157
A
ASP
158
n
156
ASP
158
A
LEU
159
n
157
LEU
159
A
LYS
160
n
158
LYS
160
A
PRO
161
n
159
PRO
161
A
GLN
162
n
160
GLN
162
A
ASN
163
n
161
ASN
163
A
ILE
164
n
162
ILE
164
A
LEU
165
n
163
LEU
165
A
LEU
166
n
164
LEU
166
A
SER
167
n
165
SER
167
A
SER
168
n
166
SER
168
A
ILE
169
n
167
ILE
169
A
TYR
170
n
168
TYR
170
A
PRO
171
n
169
PRO
171
A
LEU
172
n
170
LEU
172
A
GLY
173
n
171
GLY
173
A
ASP
174
n
172
ASP
174
A
ILE
175
n
173
ILE
175
A
LYS
176
n
174
LYS
176
A
ILE
177
n
175
ILE
177
A
VAL
178
n
176
VAL
178
A
ASP
179
n
177
ASP
179
A
PHE
180
n
178
PHE
180
A
GLY
181
n
179
GLY
181
A
MET
182
n
180
MET
182
A
SER
183
n
181
SER
183
A
ARG
184
n
182
ARG
184
A
LYS
185
n
183
LYS
185
A
ILE
186
n
184
ILE
186
A
n
185
187
A
n
186
188
A
n
187
189
A
n
188
190
A
n
189
191
A
n
190
192
A
n
191
193
A
n
192
194
A
n
193
195
A
MET
196
n
194
MET
196
A
GLY
197
n
195
GLY
197
A
THR
198
n
196
THR
198
A
PRO
199
n
197
PRO
199
A
GLU
200
n
198
GLU
200
A
TYR
201
n
199
TYR
201
A
LEU
202
n
200
LEU
202
A
ALA
203
n
201
ALA
203
A
PRO
204
n
202
PRO
204
A
GLU
205
n
203
GLU
205
A
ILE
206
n
204
ILE
206
A
LEU
207
n
205
LEU
207
A
ASN
208
n
206
ASN
208
A
TYR
209
n
207
TYR
209
A
ASP
210
n
208
ASP
210
A
PRO
211
n
209
PRO
211
A
ILE
212
n
210
ILE
212
A
THR
213
n
211
THR
213
A
THR
214
n
212
THR
214
A
ALA
215
n
213
ALA
215
A
THR
216
n
214
THR
216
A
ASP
217
n
215
ASP
217
A
MET
218
n
216
MET
218
A
TRP
219
n
217
TRP
219
A
ASN
220
n
218
ASN
220
A
ILE
221
n
219
ILE
221
A
GLY
222
n
220
GLY
222
A
ILE
223
n
221
ILE
223
A
ILE
224
n
222
ILE
224
A
ALA
225
n
223
ALA
225
A
TYR
226
n
224
TYR
226
A
MET
227
n
225
MET
227
A
LEU
228
n
226
LEU
228
A
LEU
229
n
227
LEU
229
A
THR
230
n
228
THR
230
A
HIS
231
n
229
HIS
231
A
THR
232
n
230
THR
232
A
SER
233
n
231
SER
233
A
PRO
234
n
232
PRO
234
A
PHE
235
n
233
PHE
235
A
VAL
236
n
234
VAL
236
A
GLY
237
n
235
GLY
237
A
GLU
238
n
236
GLU
238
A
ASP
239
n
237
ASP
239
A
ASN
240
n
238
ASN
240
A
GLN
241
n
239
GLN
241
A
GLU
242
n
240
GLU
242
A
THR
243
n
241
THR
243
A
TYR
244
n
242
TYR
244
A
LEU
245
n
243
LEU
245
A
ASN
246
n
244
ASN
246
A
ILE
247
n
245
ILE
247
A
SER
248
n
246
SER
248
A
GLN
249
n
247
GLN
249
A
VAL
250
n
248
VAL
250
A
ASN
251
n
249
ASN
251
A
VAL
252
n
250
VAL
252
A
ASP
253
n
251
ASP
253
A
TYR
254
n
252
TYR
254
A
SER
255
n
253
SER
255
A
GLU
256
n
254
GLU
256
A
GLU
257
n
255
GLU
257
A
THR
258
n
256
THR
258
A
PHE
259
n
257
PHE
259
A
SER
260
n
258
SER
260
A
SER
261
n
259
SER
261
A
VAL
262
n
260
VAL
262
A
SER
263
n
261
SER
263
A
GLN
264
n
262
GLN
264
A
LEU
265
n
263
LEU
265
A
ALA
266
n
264
ALA
266
A
THR
267
n
265
THR
267
A
ASP
268
n
266
ASP
268
A
PHE
269
n
267
PHE
269
A
ILE
270
n
268
ILE
270
A
GLN
271
n
269
GLN
271
A
SER
272
n
270
SER
272
A
LEU
273
n
271
LEU
273
A
LEU
274
n
272
LEU
274
A
VAL
275
n
273
VAL
275
A
LYS
276
n
274
LYS
276
A
ASN
277
n
275
ASN
277
A
PRO
278
n
276
PRO
278
A
GLU
279
n
277
GLU
279
A
LYS
280
n
278
LYS
280
A
ARG
281
n
279
ARG
281
A
PRO
282
n
280
PRO
282
A
THR
283
n
281
THR
283
A
ALA
284
n
282
ALA
284
A
GLU
285
n
283
GLU
285
A
ILE
286
n
284
ILE
286
A
CYS
287
n
285
CYS
287
A
LEU
288
n
286
LEU
288
A
SER
289
n
287
SER
289
A
HIS
290
n
288
HIS
290
A
SER
291
n
289
SER
291
A
TRP
292
n
290
TRP
292
A
LEU
293
n
291
LEU
293
A
GLN
294
n
292
GLN
294
A
GLN
295
n
293
GLN
295
A
TRP
296
n
294
TRP
296
A
ASP
297
n
295
ASP
297
A
PHE
298
n
296
PHE
298
A
GLU
299
n
297
GLU
299
A
ASN
300
n
298
ASN
300
A
LEU
301
n
299
LEU
301
A
n
300
302
A
n
301
303
A
n
302
304
A
n
303
305
A
n
304
306
A
n
305
307
A
n
306
308
A
n
307
309
A
n
308
310
A
n
309
311
A
n
310
312
A
n
311
313
A
n
312
314
A
n
313
315
A
n
314
316
A
n
315
317
A
n
316
318
A
n
317
319
A
n
318
320
A
n
319
321
A
n
320
322
A
n
321
323
A
n
322
324
A
n
323
325
A
n
324
326
A
n
325
327
A
n
326
328
A
n
327
329
A
4.5727
0.7863
-0.6551
4.3578
0.9847
2.7887
-0.0642
0.1465
-0.0489
-0.0131
0.0927
0.1317
0.1989
0.0018
-0.0285
0.0782
0.0129
-0.0488
0.0750
-0.0139
0.0384
refined
29.9586
-4.6301
-3.3583
X-RAY DIFFRACTION
0.7583
-1.6244
-1.0570
3.5075
2.1768
1.9701
-0.0723
0.0111
-0.0898
0.2047
0.0215
0.1874
0.0560
-0.1822
0.0508
0.0962
0.0026
-0.0189
0.1325
0.0067
0.0675
refined
24.0823
8.0734
8.3119
X-RAY DIFFRACTION
3.8728
-0.0659
0.0907
2.4347
0.4516
4.3129
0.0892
0.2190
0.1020
-0.1519
0.0458
-0.1334
-0.0945
0.1376
-0.1351
0.0534
0.0300
0.0196
0.0662
-0.0395
0.0871
refined
18.0753
24.7851
6.2447
X-RAY DIFFRACTION
A
18
A
79
X-RAY DIFFRACTION
1
A
80
A
183
X-RAY DIFFRACTION
2
A
184
A
301
X-RAY DIFFRACTION
3
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
40
A
N
GLY
38
A
O
VAL
47
A
O
VAL
45
A
N
ARG
48
A
N
ARG
46
A
O
ALA
61
A
O
ALA
59
A
N
ALA
60
A
N
ALA
58
A
O
LEU
110
A
O
LEU
108
A
O
ILE
107
A
O
ILE
105
A
N
TYR
100
A
N
TYR
98
A
N
ARG
68
A
N
ARG
66
A
O
GLN
71
A
O
GLN
69
A
N
GLY
116
A
N
GLY
114
A
O
LEU
166
A
O
LEU
164
A
N
LEU
165
A
N
LEU
163
A
O
LYS
176
A
O
LYS
174
A
N
VAL
155
A
N
VAL
153
A
O
ARG
184
A
O
ARG
182
1
A
NZ
LYS
43
A
NZ
LYS
41
1
Y
1
A
CD
GLU
76
A
CD
GLU
74
1
Y
1
A
OE1
GLU
76
A
OE1
GLU
74
1
Y
1
A
OE2
GLU
76
A
OE2
GLU
74
1
Y
1
A
CG
GLU
125
A
CG
GLU
123
1
Y
1
A
CD
GLU
125
A
CD
GLU
123
1
Y
1
A
OE1
GLU
125
A
OE1
GLU
123
1
Y
1
A
OE2
GLU
125
A
OE2
GLU
123
1
Y
1
A
CG
LEU
126
A
CG
LEU
124
1
Y
1
A
CD1
LEU
126
A
CD1
LEU
124
1
Y
1
A
CD2
LEU
126
A
CD2
LEU
124
1
Y
1
A
CG
MET
129
A
CG
MET
127
1
Y
1
A
SD
MET
129
A
SD
MET
127
1
Y
1
A
CE
MET
129
A
CE
MET
127
1
Y
1
A
CG
MET
196
A
CG
MET
194
1
Y
1
A
SD
MET
196
A
SD
MET
194
1
Y
1
A
CE
MET
196
A
CE
MET
194
1
Y
1
A
CD
GLU
257
A
CD
GLU
255
1
Y
1
A
OE1
GLU
257
A
OE1
GLU
255
1
Y
1
A
OE2
GLU
257
A
OE2
GLU
255
1
Y
1
A
CE
LYS
276
A
CE
LYS
274
1
Y
1
A
NZ
LYS
276
A
NZ
LYS
274
1
Y
1
A
CD
GLU
279
A
CD
GLU
277
1
Y
1
A
OE1
GLU
279
A
OE1
GLU
277
1
Y
1
A
OE2
GLU
279
A
OE2
GLU
277
1
Y
1
A
CG
LEU
301
A
CG
LEU
299
1
Y
1
A
CD1
LEU
301
A
CD1
LEU
299
1
Y
1
A
CD2
LEU
301
A
CD2
LEU
299
1
Y
1
A
MET
3
A
MET
1
1
Y
1
A
HIS
4
A
HIS
2
1
Y
1
A
HIS
5
A
HIS
3
1
Y
1
A
HIS
6
A
HIS
4
1
Y
1
A
HIS
7
A
HIS
5
1
Y
1
A
HIS
8
A
HIS
6
1
Y
1
A
HIS
9
A
HIS
7
1
Y
1
A
SER
10
A
SER
8
1
Y
1
A
SER
11
A
SER
9
1
Y
1
A
GLY
12
A
GLY
10
1
Y
1
A
VAL
13
A
VAL
11
1
Y
1
A
ASP
14
A
ASP
12
1
Y
1
A
LEU
15
A
LEU
13
1
Y
1
A
GLY
16
A
GLY
14
1
Y
1
A
THR
17
A
THR
15
1
Y
1
A
ALA
127
A
ALA
125
1
Y
1
A
GLY
187
A
GLY
185
1
Y
1
A
HIS
188
A
HIS
186
1
Y
1
A
ALA
189
A
ALA
187
1
Y
1
A
CYS
190
A
CYS
188
1
Y
1
A
GLU
191
A
GLU
189
1
Y
1
A
LEU
192
A
LEU
190
1
Y
1
A
ARG
193
A
ARG
191
1
Y
1
A
GLU
194
A
GLU
192
1
Y
1
A
ILE
195
A
ILE
193
1
Y
1
A
PHE
302
A
PHE
300
1
Y
1
A
HIS
303
A
HIS
301
1
Y
1
A
PRO
304
A
PRO
302
1
Y
1
A
GLU
305
A
GLU
303
1
Y
1
A
GLU
306
A
GLU
304
1
Y
1
A
THR
307
A
THR
305
1
Y
1
A
SER
308
A
SER
306
1
Y
1
A
SER
309
A
SER
307
1
Y
1
A
SER
310
A
SER
308
1
Y
1
A
SER
311
A
SER
309
1
Y
1
A
GLN
312
A
GLN
310
1
Y
1
A
THR
313
A
THR
311
1
Y
1
A
GLN
314
A
GLN
312
1
Y
1
A
ASP
315
A
ASP
313
1
Y
1
A
HIS
316
A
HIS
314
1
Y
1
A
SER
317
A
SER
315
1
Y
1
A
VAL
318
A
VAL
316
1
Y
1
A
ARG
319
A
ARG
317
1
Y
1
A
SER
320
A
SER
318
1
Y
1
A
SER
321
A
SER
319
1
Y
1
A
GLU
322
A
GLU
320
1
Y
1
A
ASP
323
A
ASP
321
1
Y
1
A
LYS
324
A
LYS
322
1
Y
1
A
THR
325
A
THR
323
1
Y
1
A
SER
326
A
SER
324
1
Y
1
A
LYS
327
A
LYS
325
1
Y
1
A
SER
328
A
SER
326
1
Y
1
A
SER
329
A
SER
327
1
Y
1
A
A
OD1
O
ASN
HOH
95
429
2.07
1
A
A
O
O
HOH
HOH
345
345
2.02
1_555
5_655
1
A
A
O
O
HOH
HOH
347
384
2.16
1_555
3_555
1
A
ASP
158
-151.92
44.46
1
A
ASP
179
62.69
64.02
18.239
0.54
0.00
0.00
0.54
0.00
-1.08
0.946
0.906
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.28081
0.20011
0.20401
2.29
52.49
894
16601
16601
5.1
91.69
13.051
0.150
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.271
0.252
0.80
0.80
1.40
PDB entry 3EHA
MAXIMUM LIKELIHOOD
MASK
2.29
52.49
118
2325
22
0
2185
0.014
0.022
2258
0.001
0.020
1488
1.457
1.971
3068
0.875
3.000
3640
5.511
5.000
273
35.170
25.000
106
14.064
15.000
389
19.689
15.000
10
0.083
0.200
347
0.006
0.021
2490
0.001
0.020
436
5.641
5.000
1368
2.282
5.000
550
7.133
7.000
2219
9.754
9.000
890
10.466
11.000
848
0.326
0.265
2.345
85
1258
20
98.68
2.29
52.49
3LM5
18152
0
0
0.097
0.097
1
12.5
6.6
93.2
0.902
2.29
2.39
2.2
0.902
1
6.9
100
data collection
MAR345
phasing
PHASER
refinement
REFMAC
5.5.0089
data reduction
MOSFLM
data scaling
SCALA
Crystal Structure of human Serine/Threonine Kinase 17B (STK17B) in complex with Quercetin
1
N
N
2
N
N
3
N
N
A
SER
24
A
SER
22
HELX_P
A
PHE
31
A
PHE
29
1
1
8
A
CYS
73
A
CYS
71
HELX_P
A
ALA
87
A
ALA
85
1
2
15
A
PHE
119
A
PHE
117
HELX_P
A
LEU
123
A
LEU
121
5
3
5
A
SER
131
A
SER
129
HELX_P
A
ASN
152
A
ASN
150
1
4
22
A
LYS
160
A
LYS
158
HELX_P
A
GLN
162
A
GLN
160
5
5
3
A
ASP
179
A
ASP
177
HELX_P
A
SER
183
A
SER
181
5
6
5
A
THR
198
A
THR
196
HELX_P
A
LEU
202
A
LEU
200
5
7
5
A
ALA
203
A
ALA
201
HELX_P
A
ASN
208
A
ASN
206
1
8
6
A
THR
214
A
THR
212
HELX_P
A
HIS
231
A
HIS
229
1
9
18
A
ASP
239
A
ASP
237
HELX_P
A
VAL
250
A
VAL
248
1
10
12
A
SER
263
A
SER
261
HELX_P
A
LEU
274
A
LEU
272
1
11
12
A
ASN
277
A
ASN
275
HELX_P
A
ARG
281
A
ARG
279
5
12
5
A
THR
283
A
THR
281
HELX_P
A
LEU
288
A
LEU
286
1
13
6
A
SER
289
A
SER
287
HELX_P
A
GLN
294
A
GLN
292
5
14
6
TRANSFERASE
STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase related apoptosis-inducing protein kinase 2, death-associated protein kinase-related 2, Structural Genomics, Structural Genomics Consortium, SGC, Apoptosis, ATP-binding, Kinase, Nucleotide-binding, Nucleus, Phosphoprotein, Serine/threonine-protein kinase, Transferase
A
TYR
170
A
TYR
168
1
A
PRO
171
A
PRO
169
-2.12
ST17B_HUMAN
UNP
1
25
O94768
MENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTS
EIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSR
KIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQ
LATDFIQSLLVKNPEKRPTAEICLSHSWLQQWDFENLFHPEETSSSSQTQDHSVRSSEDKTSKSS
25
329
3LM5
25
329
O94768
A
1
23
327
1
expression tag
MET
3
3LM5
A
O94768
UNP
1
1
expression tag
HIS
4
3LM5
A
O94768
UNP
2
1
expression tag
HIS
5
3LM5
A
O94768
UNP
3
1
expression tag
HIS
6
3LM5
A
O94768
UNP
4
1
expression tag
HIS
7
3LM5
A
O94768
UNP
5
1
expression tag
HIS
8
3LM5
A
O94768
UNP
6
1
expression tag
HIS
9
3LM5
A
O94768
UNP
7
1
expression tag
SER
10
3LM5
A
O94768
UNP
8
1
expression tag
SER
11
3LM5
A
O94768
UNP
9
1
expression tag
GLY
12
3LM5
A
O94768
UNP
10
1
expression tag
VAL
13
3LM5
A
O94768
UNP
11
1
expression tag
ASP
14
3LM5
A
O94768
UNP
12
1
expression tag
LEU
15
3LM5
A
O94768
UNP
13
1
expression tag
GLY
16
3LM5
A
O94768
UNP
14
1
expression tag
THR
17
3LM5
A
O94768
UNP
15
1
expression tag
GLU
18
3LM5
A
O94768
UNP
16
1
expression tag
ASN
19
3LM5
A
O94768
UNP
17
1
expression tag
LEU
20
3LM5
A
O94768
UNP
18
1
expression tag
TYR
21
3LM5
A
O94768
UNP
19
1
expression tag
PHE
22
3LM5
A
O94768
UNP
20
1
expression tag
GLN
23
3LM5
A
O94768
UNP
21
1
expression tag
SER
24
3LM5
A
O94768
UNP
22
5
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
32
A
TYR
30
A
GLY
42
A
GLY
40
A
ALA
45
A
ALA
43
A
SER
52
A
SER
50
A
GLU
58
A
GLU
56
A
LYS
65
A
LYS
63
A
GLU
105
A
GLU
103
A
GLU
111
A
GLU
109
A
LEU
96
A
LEU
94
A
GLU
101
A
GLU
99
A
ARG
67
A
ARG
65
A
ARG
68
A
ARG
66
A
GLN
71
A
GLN
69
A
ASP
72
A
ASP
70
A
GLY
116
A
GLY
114
A
GLU
117
A
GLU
115
A
ILE
164
A
ILE
162
A
LEU
166
A
LEU
164
A
ILE
175
A
ILE
173
A
ILE
177
A
ILE
175
A
ILE
154
A
ILE
152
A
VAL
155
A
VAL
153
A
ARG
184
A
ARG
182
A
LYS
185
A
LYS
183
BINDING SITE FOR RESIDUE QUE A 1
A
QUE
1
Software
12
A
ALA
60
A
ALA
58
12
1_555
A
LYS
62
A
LYS
60
12
1_555
A
GLU
80
A
GLU
78
12
1_555
A
ILE
94
A
ILE
92
12
1_555
A
LEU
110
A
LEU
108
12
1_555
A
GLU
111
A
GLU
109
12
1_555
A
TYR
112
A
TYR
110
12
1_555
A
ALA
113
A
ALA
111
12
1_555
A
LEU
165
A
LEU
163
12
1_555
A
VAL
178
A
VAL
176
12
1_555
A
ASP
179
A
ASP
177
12
1_555
A
PHE
180
A
PHE
178
12
1_555
91
P 41 2 2