0.006828 0.003942 0.000000 0.000000 0.007885 0.000000 0.000000 0.000000 0.020153 0.00000 0.00000 0.00000 Ismail, S.A. Vetter, I.R. Sot, B. Wittinghofer, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 146.450 146.450 49.620 Al F3 83.977 ALUMINUM FLUORIDE non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H15 N5 O11 P2 443.201 n GUANOSINE-5'-DIPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N AL N 2 N F N 3 N F N 4 N F N 5 N N N 6 S C N 7 N C N 8 N O N 9 N C N 10 N O N 11 N H N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N N N 19 S C N 20 N C N 21 N O N 22 N C N 23 N C N 24 N C N 25 N N N 26 N C N 27 N N N 28 N N N 29 N O N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N N N 46 S C N 47 N C N 48 N O N 49 N C N 50 N C N 51 N O N 52 N N N 53 N O N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N N N 63 S C N 64 N C N 65 N O N 66 N C N 67 N C N 68 N O N 69 N O N 70 N O N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N CA N 79 N N N 80 R C N 81 N C N 82 N O N 83 N C N 84 N S N 85 N O N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N P N 94 N O N 95 N O N 96 N O N 97 N O N 98 N P N 99 N O N 100 N O N 101 N O N 102 N C N 103 R C N 104 N O N 105 S C N 106 N O N 107 R C N 108 N O N 109 R C Y 110 N N Y 111 N C Y 112 N N Y 113 N C N 114 N C N 115 N O N 116 N N N 117 N C N 118 N N N 119 N N Y 120 N C N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N N N 137 S C N 138 N C N 139 N O N 140 N C N 141 N C N 142 N C N 143 N O N 144 N N N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N N N 157 S C N 158 N C N 159 N O N 160 N C N 161 N C N 162 N C N 163 N O N 164 N O N 165 N O N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N N N 176 N C N 177 N C N 178 N O N 179 N O N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N N N 186 S C N 187 N C N 188 N O N 189 N C Y 190 N C Y 191 N N Y 192 N C Y 193 N C Y 194 N N N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N O N 207 N H N 208 N H N 209 N N N 210 S C N 211 N C N 212 N O N 213 S C N 214 N C N 215 N C N 216 N C N 217 N O N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N N N 254 S C N 255 N C N 256 N O N 257 N C N 258 N C N 259 N C N 260 N C N 261 N N N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N N N 279 S C N 280 N C N 281 N O N 282 N C N 283 N C N 284 N S N 285 N C N 286 N O N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N MG N 299 N N N 300 S C N 301 N C N 302 N O N 303 N C Y 304 N C Y 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C N 327 N C N 328 N C N 329 N O N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 N C N 344 N O N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 R C N 358 N O N 359 N C N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N N Y 379 N C Y 380 N C Y 381 N C Y 382 N C Y 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C N 408 N O N 409 N O N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N N N 422 S C N 423 N C N 424 N O N 425 N C N 426 N C N 427 N C N 428 N O N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N doub N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N doub N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N doub N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N doub N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N doub N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N doub N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N doub N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing Y 115 N sing Y 116 N sing Y 117 N doub N 118 N sing Y 119 N sing N 120 N sing Y 121 N doub N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing Y 188 N sing Y 189 N doub Y 190 N doub N 191 N sing Y 192 N sing N 193 N sing Y 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N doub N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing Y 296 N doub Y 297 N sing Y 298 N sing N 299 N sing Y 300 N doub N 301 N sing Y 302 N doub N 303 N sing Y 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N doub N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing Y 365 N doub Y 366 N sing Y 367 N sing N 368 N sing Y 369 N doub Y 370 N sing Y 371 N sing N 372 N sing Y 373 N sing Y 374 N doub N 375 N sing Y 376 N doub N 377 N sing Y 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N doub N 389 N sing N 390 N sing N 391 N sing N 392 N sing Y 393 N doub Y 394 N sing Y 395 N sing N 396 N sing Y 397 N doub N 398 N sing Y 399 N doub N 400 N sing Y 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 141 812 821 10.1016/j.cell.2010.03.051 20510928 The structure of an Arf-ArfGAP complex reveals a Ca2+ regulatory mechanism 2010 10.2210/pdb3lvr/pdb pdb_00003lvr 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2009-04-04 MARMOSAIC 225 mm CCD SAGITALLY - HORIZONTALLY FOCUSED SI(111) MONOCHROMATOR SINGLE WAVELENGTH M x-ray 1 1.3838 1.0 X06SA SLS 1.3838 SYNCHROTRON SLS BEAMLINE X06SA Missing the N-terminus amphipathic helix for Arf6 54825.930 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3, ADP-ribosylation factor 6 GAP and Ankyrin domain, residues 416-697, residues 11-175 1 man polymer 65.409 ZINC ION 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 443.201 GUANOSINE-5'-DIPHOSPHATE 1 syn non-polymer 83.977 ALUMINUM FLUORIDE 1 syn non-polymer 40.078 CALCIUM ION 1 syn non-polymer 18.015 water 6 nat water ASAP3, Development and differentiation-enhancing factor-like 1, Protein up-regulated in liver cancer 1, Arf6, UPLC1 no no GHDGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQ PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG ETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVISTENLSSDSSLSSPSALNSLSSPSALNSTASNSPGIEGLSN KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCA DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS NYKSKLAAALEHHHHHH GHDGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQ PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG ETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVISTENLSSDSSLSSPSALNSLSSPSALNSTASNSPGIEGLSN KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCA DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS NYKSKLAAALEHHHHHH E polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample 1 282 ASAP3, ARF6 9606 Homo sapiens 562 Escherichia coli human sample 320 484 ASAP3, ARF6 9606 Homo sapiens 562 Escherichia coli sample 283 319 32630 synthetic construct 562 Escherichia coli 1 2.80 56.10 VAPOR DIFFUSION, SITTING DROP 7.5 13% PEG 8000, 150mM Magnesium Acetate, 100mM MOPS(pH 7.5); Crystals were then soaked in 30mM CaCl2 , VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 entity_src_gen software software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Refinement description Source and taxonomy Refinement description Data collection Database references Derived calculations Refinement description 1 0 2010-06-09 1 1 2011-07-13 1 2 2017-08-09 1 3 2017-11-08 1 4 2023-11-01 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id same protein complex in transition state RCSB Y PDBJ 2010-02-22 REL REL ZN ZINC ION MG MAGNESIUM ION GDP GUANOSINE-5'-DIPHOSPHATE AF3 ALUMINUM FLUORIDE CA CALCIUM ION HOH water NLSSDSSLSSPSALNSLSSPSALNSTASNSPGIEGLS IS A FLEXIBLE LINKER REGION. THIS ENTRY USES NON-SEQUENTIAL NUMBERING. 3LVQ PDB ENTRY 3LVQ PDB experimental model ZN 600 2 ZN ZN 735 E MG 168 3 MG MG 736 E GDP 167 4 GDP GDP 737 E AF3 169 5 AF3 AF3 738 E CA 170 6 CA CA 739 E HOH 211 7 HOH HOH 211 E HOH 212 7 HOH HOH 212 E HOH 220 7 HOH HOH 220 E HOH 230 7 HOH HOH 230 E HOH 231 7 HOH HOH 231 E HOH 232 7 HOH HOH 232 E n 1 416 E n 2 417 E n 3 418 E n 4 419 E n 5 420 E n 6 421 E n 7 422 E ASP 423 n 8 ASP 423 E LEU 424 n 9 LEU 424 E THR 425 n 10 THR 425 E LYS 426 n 11 LYS 426 E LEU 427 n 12 LEU 427 E LEU 428 n 13 LEU 428 E ILE 429 n 14 ILE 429 E ALA 430 n 15 ALA 430 E GLU 431 n 16 GLU 431 E VAL 432 n 17 VAL 432 E LYS 433 n 18 LYS 433 E SER 434 n 19 SER 434 E ARG 435 n 20 ARG 435 E PRO 436 n 21 PRO 436 E GLY 437 n 22 GLY 437 E ASN 438 n 23 ASN 438 E SER 439 n 24 SER 439 E GLN 440 n 25 GLN 440 E CYS 441 n 26 CYS 441 E CYS 442 n 27 CYS 442 E ASP 443 n 28 ASP 443 E CYS 444 n 29 CYS 444 E GLY 445 n 30 GLY 445 E ALA 446 n 31 ALA 446 E ALA 447 n 32 ALA 447 E ASP 448 n 33 ASP 448 E PRO 449 n 34 PRO 449 E THR 450 n 35 THR 450 E TRP 451 n 36 TRP 451 E LEU 452 n 37 LEU 452 E SER 453 n 38 SER 453 E THR 454 n 39 THR 454 E ASN 455 n 40 ASN 455 E LEU 456 n 41 LEU 456 E GLY 457 n 42 GLY 457 E VAL 458 n 43 VAL 458 E LEU 459 n 44 LEU 459 E THR 460 n 45 THR 460 E CYS 461 n 46 CYS 461 E ILE 462 n 47 ILE 462 E GLN 463 n 48 GLN 463 E CYS 464 n 49 CYS 464 E SER 465 n 50 SER 465 E GLY 466 n 51 GLY 466 E VAL 467 n 52 VAL 467 E HIS 468 n 53 HIS 468 E ARG 469 n 54 ARG 469 E GLU 470 n 55 GLU 470 E LEU 471 n 56 LEU 471 E GLY 472 n 57 GLY 472 E VAL 473 n 58 VAL 473 E ARG 474 n 59 ARG 474 E PHE 475 n 60 PHE 475 E SER 476 n 61 SER 476 E ARG 477 n 62 ARG 477 E MET 478 n 63 MET 478 E GLN 479 n 64 GLN 479 E SER 480 n 65 SER 480 E LEU 481 n 66 LEU 481 E THR 482 n 67 THR 482 E LEU 483 n 68 LEU 483 E ASP 484 n 69 ASP 484 E LEU 485 n 70 LEU 485 E LEU 486 n 71 LEU 486 E GLY 487 n 72 GLY 487 E PRO 488 n 73 PRO 488 E SER 489 n 74 SER 489 E GLU 490 n 75 GLU 490 E LEU 491 n 76 LEU 491 E LEU 492 n 77 LEU 492 E LEU 493 n 78 LEU 493 E ALA 494 n 79 ALA 494 E LEU 495 n 80 LEU 495 E ASN 496 n 81 ASN 496 E MET 497 n 82 MET 497 E GLY 498 n 83 GLY 498 E ASN 499 n 84 ASN 499 E THR 500 n 85 THR 500 E SER 501 n 86 SER 501 E PHE 502 n 87 PHE 502 E ASN 503 n 88 ASN 503 E GLU 504 n 89 GLU 504 E VAL 505 n 90 VAL 505 E MET 506 n 91 MET 506 E GLU 507 n 92 GLU 507 E ALA 508 n 93 ALA 508 E GLN 509 n 94 GLN 509 E LEU 510 n 95 LEU 510 E PRO 511 n 96 PRO 511 E SER 512 n 97 SER 512 E HIS 513 n 98 HIS 513 E GLY 514 n 99 GLY 514 E GLY 515 n 100 GLY 515 E PRO 516 n 101 PRO 516 E LYS 517 n 102 LYS 517 E PRO 518 n 103 PRO 518 E SER 519 n 104 SER 519 E ALA 520 n 105 ALA 520 E GLU 521 n 106 GLU 521 E SER 522 n 107 SER 522 E ASP 523 n 108 ASP 523 E MET 524 n 109 MET 524 E GLY 525 n 110 GLY 525 E THR 526 n 111 THR 526 E ARG 527 n 112 ARG 527 E ARG 528 n 113 ARG 528 E ASP 529 n 114 ASP 529 E TYR 530 n 115 TYR 530 E ILE 531 n 116 ILE 531 E MET 532 n 117 MET 532 E ALA 533 n 118 ALA 533 E LYS 534 n 119 LYS 534 E TYR 535 n 120 TYR 535 E VAL 536 n 121 VAL 536 E GLU 537 n 122 GLU 537 E HIS 538 n 123 HIS 538 E ARG 539 n 124 ARG 539 E PHE 540 n 125 PHE 540 E ALA 541 n 126 ALA 541 E ARG 542 n 127 ARG 542 E ARG 543 n 128 ARG 543 E CYS 544 n 129 CYS 544 E THR 545 n 130 THR 545 E n 131 546 E GLU 547 n 132 GLU 547 E PRO 548 n 133 PRO 548 E GLN 549 n 134 GLN 549 E ARG 550 n 135 ARG 550 E LEU 551 n 136 LEU 551 E TRP 552 n 137 TRP 552 E THR 553 n 138 THR 553 E ALA 554 n 139 ALA 554 E ILE 555 n 140 ILE 555 E CYS 556 n 141 CYS 556 E ASN 557 n 142 ASN 557 E ARG 558 n 143 ARG 558 E ASP 559 n 144 ASP 559 E LEU 560 n 145 LEU 560 E LEU 561 n 146 LEU 561 E SER 562 n 147 SER 562 E VAL 563 n 148 VAL 563 E LEU 564 n 149 LEU 564 E GLU 565 n 150 GLU 565 E ALA 566 n 151 ALA 566 E PHE 567 n 152 PHE 567 E ALA 568 n 153 ALA 568 E ASN 569 n 154 ASN 569 E GLY 570 n 155 GLY 570 E GLN 571 n 156 GLN 571 E ASP 572 n 157 ASP 572 E PHE 573 n 158 PHE 573 E GLY 574 n 159 GLY 574 E GLN 575 n 160 GLN 575 E PRO 576 n 161 PRO 576 E LEU 577 n 162 LEU 577 E PRO 578 n 163 PRO 578 E GLY 579 n 164 GLY 579 E PRO 580 n 165 PRO 580 E ASP 581 n 166 ASP 581 E ALA 582 n 167 ALA 582 E GLN 583 n 168 GLN 583 E ALA 584 n 169 ALA 584 E PRO 585 n 170 PRO 585 E GLU 586 n 171 GLU 586 E GLU 587 n 172 GLU 587 E LEU 588 n 173 LEU 588 E VAL 589 n 174 VAL 589 E LEU 590 n 175 LEU 590 E HIS 591 n 176 HIS 591 E LEU 592 n 177 LEU 592 E ALA 593 n 178 ALA 593 E VAL 594 n 179 VAL 594 E LYS 595 n 180 LYS 595 E VAL 596 n 181 VAL 596 E ALA 597 n 182 ALA 597 E ASN 598 n 183 ASN 598 E GLN 599 n 184 GLN 599 E ALA 600 n 185 ALA 600 E SER 601 n 186 SER 601 E LEU 602 n 187 LEU 602 E PRO 603 n 188 PRO 603 E LEU 604 n 189 LEU 604 E VAL 605 n 190 VAL 605 E ASP 606 n 191 ASP 606 E PHE 607 n 192 PHE 607 E ILE 608 n 193 ILE 608 E ILE 609 n 194 ILE 609 E GLN 610 n 195 GLN 610 E ASN 611 n 196 ASN 611 E GLY 612 n 197 GLY 612 E GLY 613 n 198 GLY 613 E HIS 614 n 199 HIS 614 E LEU 615 n 200 LEU 615 E ASP 616 n 201 ASP 616 E ALA 617 n 202 ALA 617 E LYS 618 n 203 LYS 618 E ALA 619 n 204 ALA 619 E n 205 620 E ASP 621 n 206 ASP 621 E GLY 622 n 207 GLY 622 E ASN 623 n 208 ASN 623 E THR 624 n 209 THR 624 E ALA 625 n 210 ALA 625 E LEU 626 n 211 LEU 626 E HIS 627 n 212 HIS 627 E TYR 628 n 213 TYR 628 E ALA 629 n 214 ALA 629 E ALA 630 n 215 ALA 630 E LEU 631 n 216 LEU 631 E TYR 632 n 217 TYR 632 E ASN 633 n 218 ASN 633 E GLN 634 n 219 GLN 634 E PRO 635 n 220 PRO 635 E ASP 636 n 221 ASP 636 E CYS 637 n 222 CYS 637 E LEU 638 n 223 LEU 638 E LYS 639 n 224 LYS 639 E LEU 640 n 225 LEU 640 E LEU 641 n 226 LEU 641 E LEU 642 n 227 LEU 642 E LYS 643 n 228 LYS 643 E GLY 644 n 229 GLY 644 E ARG 645 n 230 ARG 645 E ALA 646 n 231 ALA 646 E LEU 647 n 232 LEU 647 E VAL 648 n 233 VAL 648 E GLY 649 n 234 GLY 649 E THR 650 n 235 THR 650 E VAL 651 n 236 VAL 651 E ASN 652 n 237 ASN 652 E GLU 653 n 238 GLU 653 E ALA 654 n 239 ALA 654 E GLY 655 n 240 GLY 655 E GLU 656 n 241 GLU 656 E THR 657 n 242 THR 657 E ALA 658 n 243 ALA 658 E LEU 659 n 244 LEU 659 E ASP 660 n 245 ASP 660 E ILE 661 n 246 ILE 661 E ALA 662 n 247 ALA 662 E ARG 663 n 248 ARG 663 E LYS 664 n 249 LYS 664 E LYS 665 n 250 LYS 665 E HIS 666 n 251 HIS 666 E HIS 667 n 252 HIS 667 E LYS 668 n 253 LYS 668 E GLU 669 n 254 GLU 669 E CYS 670 n 255 CYS 670 E GLU 671 n 256 GLU 671 E GLU 672 n 257 GLU 672 E LEU 673 n 258 LEU 673 E LEU 674 n 259 LEU 674 E GLU 675 n 260 GLU 675 E GLN 676 n 261 GLN 676 E ALA 677 n 262 ALA 677 E GLN 678 n 263 GLN 678 E ALA 679 n 264 ALA 679 E n 265 680 E n 266 681 E n 267 682 E n 268 683 E n 269 684 E n 270 685 E n 271 686 E n 272 687 E n 273 688 E n 274 689 E n 275 690 E n 276 691 E n 277 692 E n 278 693 E n 279 694 E n 280 695 E n 281 696 E n 282 697 E n 283 698 E n 284 699 E n 285 700 E n 286 701 E n 287 702 E n 288 703 E n 289 704 E n 290 705 E n 291 706 E n 292 707 E n 293 708 E n 294 709 E n 295 710 E n 296 711 E n 297 712 E n 298 713 E n 299 714 E n 300 715 E n 301 716 E n 302 717 E n 303 718 E n 304 719 E n 305 720 E n 306 721 E n 307 722 E n 308 723 E n 309 724 E n 310 725 E n 311 726 E n 312 727 E n 313 728 E n 314 729 E n 315 730 E n 316 731 E n 317 732 E n 318 733 E n 319 734 E ASN 11 n 320 ASN 11 E LYS 12 n 321 LYS 12 E GLU 13 n 322 GLU 13 E MET 14 n 323 MET 14 E ARG 15 n 324 ARG 15 E ILE 16 n 325 ILE 16 E LEU 17 n 326 LEU 17 E MET 18 n 327 MET 18 E LEU 19 n 328 LEU 19 E GLY 20 n 329 GLY 20 E LEU 21 n 330 LEU 21 E ASP 22 n 331 ASP 22 E ALA 23 n 332 ALA 23 E ALA 24 n 333 ALA 24 E GLY 25 n 334 GLY 25 E LYS 26 n 335 LYS 26 E THR 27 n 336 THR 27 E THR 28 n 337 THR 28 E ILE 29 n 338 ILE 29 E LEU 30 n 339 LEU 30 E TYR 31 n 340 TYR 31 E LYS 32 n 341 LYS 32 E LEU 33 n 342 LEU 33 E LYS 34 n 343 LYS 34 E LEU 35 n 344 LEU 35 E GLY 36 n 345 GLY 36 E GLN 37 n 346 GLN 37 E SER 38 n 347 SER 38 E VAL 39 n 348 VAL 39 E THR 40 n 349 THR 40 E THR 41 n 350 THR 41 E ILE 42 n 351 ILE 42 E PRO 43 n 352 PRO 43 E THR 44 n 353 THR 44 E VAL 45 n 354 VAL 45 E GLY 46 n 355 GLY 46 E PHE 47 n 356 PHE 47 E ASN 48 n 357 ASN 48 E VAL 49 n 358 VAL 49 E GLU 50 n 359 GLU 50 E THR 51 n 360 THR 51 E VAL 52 n 361 VAL 52 E THR 53 n 362 THR 53 E TYR 54 n 363 TYR 54 E LYS 55 n 364 LYS 55 E ASN 56 n 365 ASN 56 E VAL 57 n 366 VAL 57 E LYS 58 n 367 LYS 58 E PHE 59 n 368 PHE 59 E ASN 60 n 369 ASN 60 E VAL 61 n 370 VAL 61 E TRP 62 n 371 TRP 62 E ASP 63 n 372 ASP 63 E VAL 64 n 373 VAL 64 E GLY 65 n 374 GLY 65 E GLY 66 n 375 GLY 66 E GLN 67 n 376 GLN 67 E ASP 68 n 377 ASP 68 E LYS 69 n 378 LYS 69 E ILE 70 n 379 ILE 70 E ARG 71 n 380 ARG 71 E PRO 72 n 381 PRO 72 E LEU 73 n 382 LEU 73 E TRP 74 n 383 TRP 74 E ARG 75 n 384 ARG 75 E HIS 76 n 385 HIS 76 E TYR 77 n 386 TYR 77 E TYR 78 n 387 TYR 78 E THR 79 n 388 THR 79 E GLY 80 n 389 GLY 80 E THR 81 n 390 THR 81 E GLN 82 n 391 GLN 82 E GLY 83 n 392 GLY 83 E LEU 84 n 393 LEU 84 E ILE 85 n 394 ILE 85 E PHE 86 n 395 PHE 86 E VAL 87 n 396 VAL 87 E VAL 88 n 397 VAL 88 E ASP 89 n 398 ASP 89 E CYS 90 n 399 CYS 90 E ALA 91 n 400 ALA 91 E ASP 92 n 401 ASP 92 E ARG 93 n 402 ARG 93 E ASP 94 n 403 ASP 94 E ARG 95 n 404 ARG 95 E ILE 96 n 405 ILE 96 E ASP 97 n 406 ASP 97 E GLU 98 n 407 GLU 98 E ALA 99 n 408 ALA 99 E ARG 100 n 409 ARG 100 E GLN 101 n 410 GLN 101 E GLU 102 n 411 GLU 102 E LEU 103 n 412 LEU 103 E HIS 104 n 413 HIS 104 E ARG 105 n 414 ARG 105 E ILE 106 n 415 ILE 106 E ILE 107 n 416 ILE 107 E ASN 108 n 417 ASN 108 E ASP 109 n 418 ASP 109 E ARG 110 n 419 ARG 110 E GLU 111 n 420 GLU 111 E MET 112 n 421 MET 112 E ARG 113 n 422 ARG 113 E ASP 114 n 423 ASP 114 E ALA 115 n 424 ALA 115 E ILE 116 n 425 ILE 116 E ILE 117 n 426 ILE 117 E LEU 118 n 427 LEU 118 E ILE 119 n 428 ILE 119 E PHE 120 n 429 PHE 120 E ALA 121 n 430 ALA 121 E ASN 122 n 431 ASN 122 E LYS 123 n 432 LYS 123 E GLN 124 n 433 GLN 124 E ASP 125 n 434 ASP 125 E LEU 126 n 435 LEU 126 E PRO 127 n 436 PRO 127 E ASP 128 n 437 ASP 128 E ALA 129 n 438 ALA 129 E MET 130 n 439 MET 130 E LYS 131 n 440 LYS 131 E PRO 132 n 441 PRO 132 E HIS 133 n 442 HIS 133 E GLU 134 n 443 GLU 134 E ILE 135 n 444 ILE 135 E GLN 136 n 445 GLN 136 E GLU 137 n 446 GLU 137 E LYS 138 n 447 LYS 138 E LEU 139 n 448 LEU 139 E GLY 140 n 449 GLY 140 E LEU 141 n 450 LEU 141 E THR 142 n 451 THR 142 E ARG 143 n 452 ARG 143 E ILE 144 n 453 ILE 144 E ARG 145 n 454 ARG 145 E ASP 146 n 455 ASP 146 E ARG 147 n 456 ARG 147 E ASN 148 n 457 ASN 148 E TRP 149 n 458 TRP 149 E TYR 150 n 459 TYR 150 E VAL 151 n 460 VAL 151 E GLN 152 n 461 GLN 152 E PRO 153 n 462 PRO 153 E SER 154 n 463 SER 154 E CYS 155 n 464 CYS 155 E ALA 156 n 465 ALA 156 E THR 157 n 466 THR 157 E SER 158 n 467 SER 158 E GLY 159 n 468 GLY 159 E ASP 160 n 469 ASP 160 E GLY 161 n 470 GLY 161 E LEU 162 n 471 LEU 162 E TYR 163 n 472 TYR 163 E GLU 164 n 473 GLU 164 E GLY 165 n 474 GLY 165 E LEU 166 n 475 LEU 166 E THR 167 n 476 THR 167 E TRP 168 n 477 TRP 168 E LEU 169 n 478 LEU 169 E THR 170 n 479 THR 170 E SER 171 n 480 SER 171 E ASN 172 n 481 ASN 172 E TYR 173 n 482 TYR 173 E LYS 174 n 483 LYS 174 E n 484 175 E n 485 176 E n 486 177 E n 487 178 E n 488 179 E n 489 180 E n 490 181 E n 491 182 E n 492 183 E n 493 184 E n 494 185 E n 495 186 E n 496 187 E n 497 188 E 5.3368 1.1971 -0.0031 9.7407 -0.8969 4.9919 -0.1094 0.0863 -0.7944 0.0645 0.1212 -0.4716 0.7445 -0.4123 -0.0118 -0.5114 0.1040 0.1519 -0.3132 -0.1904 -0.4966 refined 37.7090 31.5561 -3.2190 X-RAY DIFFRACTION 11.3975 0.2885 0.3194 7.8783 0.0237 5.7939 -0.2783 -0.3039 0.8954 0.3346 0.0096 0.8382 -0.1207 -0.2749 0.2687 -0.7100 0.0865 0.1309 -0.6942 -0.1082 -0.4774 refined 20.5949 55.7745 5.3018 X-RAY DIFFRACTION E 423 E 679 X-RAY DIFFRACTION 1 A 11 A 174 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 1 monomeric E THR 27 A OG1 THR 336 1_555 E MG 736 C MG MG 1_555 E THR 44 A OG1 THR 353 1_555 78.3 E THR 27 A OG1 THR 336 1_555 E MG 736 C MG MG 1_555 E HOH 220 G O HOH 1_555 57.8 E THR 44 A OG1 THR 353 1_555 E MG 736 C MG MG 1_555 E HOH 220 G O HOH 1_555 73.9 E THR 27 A OG1 THR 336 1_555 E MG 736 C MG MG 1_555 E GDP 737 D O2B GDP 1_555 73.4 E THR 44 A OG1 THR 353 1_555 E MG 736 C MG MG 1_555 E GDP 737 D O2B GDP 1_555 137.9 E HOH 220 G O HOH 1_555 E MG 736 C MG MG 1_555 E GDP 737 D O2B GDP 1_555 64.8 E ASP 68 A OD2 ASP 377 1_555 E CA 739 F CA CA 1_555 E ASP 68 A OD1 ASP 377 1_555 45.7 E ASP 68 A OD2 ASP 377 1_555 E CA 739 F CA CA 1_555 E GLU 98 A OE2 GLU 407 1_555 115.8 E ASP 68 A OD1 ASP 377 1_555 E CA 739 F CA CA 1_555 E GLU 98 A OE2 GLU 407 1_555 70.1 E ASP 68 A OD2 ASP 377 1_555 E CA 739 F CA CA 1_555 E HOH 232 G O HOH 1_555 80.1 E ASP 68 A OD1 ASP 377 1_555 E CA 739 F CA CA 1_555 E HOH 232 G O HOH 1_555 87.2 E GLU 98 A OE2 GLU 407 1_555 E CA 739 F CA CA 1_555 E HOH 232 G O HOH 1_555 99.0 E ASP 68 A OD2 ASP 377 1_555 E CA 739 F CA CA 1_555 E GLN 479 A OE1 GLN 64 1_555 79.3 E ASP 68 A OD1 ASP 377 1_555 E CA 739 F CA CA 1_555 E GLN 479 A OE1 GLN 64 1_555 124.0 E GLU 98 A OE2 GLU 407 1_555 E CA 739 F CA CA 1_555 E GLN 479 A OE1 GLN 64 1_555 161.8 E HOH 232 G O HOH 1_555 E CA 739 F CA CA 1_555 E GLN 479 A OE1 GLN 64 1_555 93.6 E CYS 441 A SG CYS 26 1_555 E ZN 735 B ZN ZN 1_555 E CYS 444 A SG CYS 29 1_555 119.0 E CYS 441 A SG CYS 26 1_555 E ZN 735 B ZN ZN 1_555 E CYS 461 A SG CYS 46 1_555 114.1 E CYS 444 A SG CYS 29 1_555 E ZN 735 B ZN ZN 1_555 E CYS 461 A SG CYS 46 1_555 112.0 E CYS 441 A SG CYS 26 1_555 E ZN 735 B ZN ZN 1_555 E CYS 464 A SG CYS 49 1_555 100.0 E CYS 444 A SG CYS 29 1_555 E ZN 735 B ZN ZN 1_555 E CYS 464 A SG CYS 49 1_555 103.0 E CYS 461 A SG CYS 46 1_555 E ZN 735 B ZN ZN 1_555 E CYS 464 A SG CYS 49 1_555 106.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 E O THR 460 A O THR 45 E N TRP 451 A N TRP 36 E N LEU 452 A N LEU 37 E O GLN 479 A O GLN 64 E N LEU 577 A N LEU 162 E O GLU 587 A O GLU 172 E N ASN 48 A N ASN 357 E O ASP 63 A O ASP 372 E O TRP 62 A O TRP 371 E N MET 18 A N MET 327 E N LEU 19 A N LEU 328 E O VAL 87 A O VAL 396 E N LEU 84 A N LEU 393 E O LEU 118 A O LEU 427 E N ILE 119 A N ILE 428 E O GLN 152 A O GLN 461 1 E CG ASP 606 A CG ASP 191 1 Y 1 E OD1 ASP 606 A OD1 ASP 191 1 Y 1 E OD2 ASP 606 A OD2 ASP 191 1 Y 1 E CG ASN 11 A CG ASN 320 1 Y 1 E OD1 ASN 11 A OD1 ASN 320 1 Y 1 E ND2 ASN 11 A ND2 ASN 320 1 Y 1 E CG LYS 12 A CG LYS 321 1 Y 1 E CD LYS 12 A CD LYS 321 1 Y 1 E CE LYS 12 A CE LYS 321 1 Y 1 E NZ LYS 12 A NZ LYS 321 1 Y 1 E CG GLU 13 A CG GLU 322 1 Y 1 E CD GLU 13 A CD GLU 322 1 Y 1 E OE1 GLU 13 A OE1 GLU 322 1 Y 1 E OE2 GLU 13 A OE2 GLU 322 1 Y 1 E CG LYS 174 A CG LYS 483 1 Y 1 E CD LYS 174 A CD LYS 483 1 Y 1 E CE LYS 174 A CE LYS 483 1 Y 1 E NZ LYS 174 A NZ LYS 483 1 Y 1 E GLY 416 A GLY 1 1 Y 1 E HIS 417 A HIS 2 1 Y 1 E ASP 418 A ASP 3 1 Y 1 E GLY 419 A GLY 4 1 Y 1 E GLU 420 A GLU 5 1 Y 1 E PRO 421 A PRO 6 1 Y 1 E HIS 422 A HIS 7 1 Y 1 E PRO 546 A PRO 131 1 Y 1 E ALA 620 A ALA 205 1 Y 1 E GLY 680 A GLY 265 1 Y 1 E THR 681 A THR 266 1 Y 1 E PHE 682 A PHE 267 1 Y 1 E ALA 683 A ALA 268 1 Y 1 E PHE 684 A PHE 269 1 Y 1 E PRO 685 A PRO 270 1 Y 1 E LEU 686 A LEU 271 1 Y 1 E HIS 687 A HIS 272 1 Y 1 E VAL 688 A VAL 273 1 Y 1 E ASP 689 A ASP 274 1 Y 1 E TYR 690 A TYR 275 1 Y 1 E SER 691 A SER 276 1 Y 1 E TRP 692 A TRP 277 1 Y 1 E VAL 693 A VAL 278 1 Y 1 E ILE 694 A ILE 279 1 Y 1 E SER 695 A SER 280 1 Y 1 E THR 696 A THR 281 1 Y 1 E GLU 697 A GLU 282 1 Y 1 E ASN 698 A ASN 283 1 Y 1 E LEU 699 A LEU 284 1 Y 1 E SER 700 A SER 285 1 Y 1 E SER 701 A SER 286 1 Y 1 E ASP 702 A ASP 287 1 Y 1 E SER 703 A SER 288 1 Y 1 E SER 704 A SER 289 1 Y 1 E LEU 705 A LEU 290 1 Y 1 E SER 706 A SER 291 1 Y 1 E SER 707 A SER 292 1 Y 1 E PRO 708 A PRO 293 1 Y 1 E SER 709 A SER 294 1 Y 1 E ALA 710 A ALA 295 1 Y 1 E LEU 711 A LEU 296 1 Y 1 E ASN 712 A ASN 297 1 Y 1 E SER 713 A SER 298 1 Y 1 E LEU 714 A LEU 299 1 Y 1 E SER 715 A SER 300 1 Y 1 E SER 716 A SER 301 1 Y 1 E PRO 717 A PRO 302 1 Y 1 E SER 718 A SER 303 1 Y 1 E ALA 719 A ALA 304 1 Y 1 E LEU 720 A LEU 305 1 Y 1 E ASN 721 A ASN 306 1 Y 1 E SER 722 A SER 307 1 Y 1 E THR 723 A THR 308 1 Y 1 E ALA 724 A ALA 309 1 Y 1 E SER 725 A SER 310 1 Y 1 E ASN 726 A ASN 311 1 Y 1 E SER 727 A SER 312 1 Y 1 E PRO 728 A PRO 313 1 Y 1 E GLY 729 A GLY 314 1 Y 1 E ILE 730 A ILE 315 1 Y 1 E GLU 731 A GLU 316 1 Y 1 E GLY 732 A GLY 317 1 Y 1 E LEU 733 A LEU 318 1 Y 1 E SER 734 A SER 319 1 Y 1 E SER 175 A SER 484 1 Y 1 E LYS 176 A LYS 485 1 Y 1 E LEU 177 A LEU 486 1 Y 1 E ALA 178 A ALA 487 1 Y 1 E ALA 179 A ALA 488 1 Y 1 E ALA 180 A ALA 489 1 Y 1 E LEU 181 A LEU 490 1 Y 1 E GLU 182 A GLU 491 1 Y 1 E HIS 183 A HIS 492 1 Y 1 E HIS 184 A HIS 493 1 Y 1 E HIS 185 A HIS 494 1 Y 1 E HIS 186 A HIS 495 1 Y 1 E HIS 187 A HIS 496 1 Y 1 E HIS 188 A HIS 497 1 Y 1 E E O3B AL GDP AF3 737 738 1.80 1 E E AL O AF3 HOH 738 230 1.97 1 E ASP 448 -14.51 96.94 1 E MET 497 -129.73 -87.21 1 E GLN 509 -92.44 43.80 1 E ALA 520 -15.22 -76.30 1 E CYS 544 -177.10 -172.70 1 E ASP 572 66.16 92.91 1 E PRO 580 -71.52 -147.16 1 E VAL 596 -100.61 45.82 1 E LYS 618 -121.76 -69.20 1 E ASN 633 55.85 70.84 1 E GLN 634 -119.14 76.02 1 E ARG 645 54.61 88.17 1 E ASN 652 -110.73 -157.10 1 E LYS 12 43.55 75.43 1 E THR 53 -112.48 67.73 1 E PRO 72 -56.91 -5.49 1 E ARG 95 -106.36 48.89 1 E MET 112 -151.30 5.80 1 E ASP 114 -72.55 42.16 1 E PRO 127 -47.28 -86.96 1 E MET 130 71.83 106.63 1 E LEU 139 -67.87 0.14 1 E TYR 150 -167.02 111.02 125.397 -6.75 -3.38 0.00 -6.75 0.00 10.13 0.940 0.901 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.28129 0.20746 0.21095 3.38 29.46 437 8294 5.0 100.00 56.231 0.451 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.610 0.80 0.80 1.20 PDB ENTRY 3LVQ MAXIMUM LIKELIHOOD MASK 3.38 29.46 6 3298 35 0 3257 0.006 0.022 3348 1.058 1.977 4540 5.473 5.000 415 38.465 24.211 152 17.901 15.000 575 13.860 15.000 25 0.076 0.200 513 0.002 0.020 2509 0.201 0.200 1544 0.299 0.200 2257 0.137 0.200 114 0.113 0.200 2 0.195 0.200 27 0.223 1.500 2129 0.405 2.000 3329 0.446 3.000 1375 0.813 4.500 1211 0.296 0.249 3.467 32 601 601 20 100.00 3.38 29.46 3LVR 8310 8310 1 1 0.101 0.080 1 19 5.85 99.7 0.575 3.38 3.5 3.5 1657 0.676 5.8 99.5 data collection ProDC phasing MOLREP refinement REFMAC 5.2.0019 data reduction XDS data scaling XSCALE The crystal structure of ASAP3 in complex with Arf6 in transition state soaked with Calcium 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N E THR 425 A THR 10 HELX_P E SER 434 A SER 19 1 1 10 E CYS 461 A CYS 46 HELX_P E GLY 472 A GLY 57 1 2 12 E GLY 487 A GLY 72 HELX_P E GLU 490 A GLU 75 5 3 4 E LEU 491 A LEU 76 HELX_P E MET 497 A MET 82 1 4 7 E GLY 498 A GLY 83 HELX_P E GLU 507 A GLU 92 1 5 10 E ASP 523 A ASP 108 HELX_P E VAL 536 A VAL 121 1 6 14 E GLU 547 A GLU 132 HELX_P E ARG 558 A ARG 143 1 7 12 E ASP 559 A ASP 144 HELX_P E ASN 569 A ASN 154 1 8 11 E VAL 589 A VAL 174 HELX_P E VAL 596 A VAL 181 1 9 8 E SER 601 A SER 186 HELX_P E GLY 612 A GLY 197 1 10 12 E THR 624 A THR 209 HELX_P E TYR 632 A TYR 217 1 11 9 E GLN 634 A GLN 219 HELX_P E GLY 644 A GLY 229 1 12 11 E THR 657 A THR 242 HELX_P E LYS 665 A LYS 250 1 13 9 E GLU 669 A GLU 254 HELX_P E ALA 677 A ALA 262 1 14 9 E GLY 25 A GLY 334 HELX_P E GLY 36 A GLY 345 1 15 12 E GLN 67 A GLN 376 HELX_P E ARG 71 A ARG 380 5 16 5 E LEU 73 A LEU 382 HELX_P E TYR 78 A TYR 387 5 17 6 E ARG 95 A ARG 404 HELX_P E ASN 108 A ASN 417 1 18 14 E LYS 131 A LYS 440 HELX_P E LEU 139 A LEU 448 1 19 9 E GLY 161 A GLY 470 HELX_P E TYR 173 A TYR 482 1 20 13 metalc 2.509 E THR 27 A OG1 THR 336 1_555 E MG 736 C MG MG 1_555 metalc 2.168 E THR 44 A OG1 THR 353 1_555 E MG 736 C MG MG 1_555 metalc 2.508 E ASP 68 A OD2 ASP 377 1_555 E CA 739 F CA CA 1_555 metalc 3.022 E ASP 68 A OD1 ASP 377 1_555 E CA 739 F CA CA 1_555 metalc 2.983 E GLU 98 A OE2 GLU 407 1_555 E CA 739 F CA CA 1_555 metalc 2.861 E HOH 220 G O HOH 1_555 E MG 736 C MG MG 1_555 metalc 2.797 E HOH 232 G O HOH 1_555 E CA 739 F CA CA 1_555 metalc 2.409 E CYS 441 A SG CYS 26 1_555 E ZN 735 B ZN ZN 1_555 metalc 2.060 E CYS 444 A SG CYS 29 1_555 E ZN 735 B ZN ZN 1_555 metalc 2.292 E CYS 461 A SG CYS 46 1_555 E ZN 735 B ZN ZN 1_555 metalc 2.273 E CYS 464 A SG CYS 49 1_555 E ZN 735 B ZN ZN 1_555 metalc 2.949 E GLN 479 A OE1 GLN 64 1_555 E CA 739 F CA CA 1_555 metalc 2.089 E MG 736 C MG MG 1_555 E GDP 737 D O2B GDP 1_555 PROTEIN TRANSPORT Arf6, ASAP3, UPLC1, GDP, Calcium, ArfGAP, Arf, Linkers, Alternative splicing, ANK repeat, Coiled coil, Cytoplasm, Metal-binding, Phosphoprotein, Polymorphism, Zinc, Zinc-finger, Cell membrane, Endosome, ER-Golgi transport, Golgi apparatus, GTP-binding, Lipoprotein, Myristate, Nucleotide-binding, Protein transport, Transport ASAP3_HUMAN UNP 1 416 Q8TDY4 GHDGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQ PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG ETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVISTE 3LVQ PDB 1 698 3LVQ NLSSDSSLSSPSALNSLSSPSALNSTASNSPGIEGLS ARF6_HUMAN UNP 1 11 P62330 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDC ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT SNYKS 416 697 3LVR 416 697 Q8TDY4 E 1 1 282 698 734 3LVR 698 734 3LVQ E 2 283 319 11 175 3LVR 11 175 P62330 E 3 320 484 3 expression tag LYS 176 3LVR E P62330 UNP 485 3 expression tag LEU 177 3LVR E P62330 UNP 486 3 expression tag ALA 178 3LVR E P62330 UNP 487 3 expression tag ALA 179 3LVR E P62330 UNP 488 3 expression tag ALA 180 3LVR E P62330 UNP 489 3 expression tag LEU 181 3LVR E P62330 UNP 490 3 expression tag GLU 182 3LVR E P62330 UNP 491 3 expression tag HIS 183 3LVR E P62330 UNP 492 3 expression tag HIS 184 3LVR E P62330 UNP 493 3 expression tag HIS 185 3LVR E P62330 UNP 494 3 expression tag HIS 186 3LVR E P62330 UNP 495 3 expression tag HIS 187 3LVR E P62330 UNP 496 3 expression tag HIS 188 3LVR E P62330 UNP 497 3 2 6 anti-parallel anti-parallel anti-parallel anti-parallel parallel parallel parallel parallel E LEU 459 A LEU 44 E THR 460 A THR 45 E TRP 451 A TRP 36 E SER 453 A SER 38 E MET 478 A MET 63 E SER 480 A SER 65 E PRO 576 A PRO 161 E LEU 577 A LEU 162 E GLU 587 A GLU 172 E LEU 588 A LEU 173 E PHE 47 A PHE 356 E THR 53 A THR 362 E LYS 58 A LYS 367 E VAL 64 A VAL 373 E GLU 13 A GLU 322 E LEU 19 A LEU 328 E GLY 83 A GLY 392 E ASP 89 A ASP 398 E ILE 116 A ILE 425 E ASN 122 A ASN 431 E ASN 148 A ASN 457 E PRO 153 A PRO 462 BINDING SITE FOR RESIDUE ZN E 735 E ZN 735 Software 5 BINDING SITE FOR RESIDUE MG E 736 E MG 736 Software 7 BINDING SITE FOR RESIDUE GDP E 737 E GDP 737 Software 20 BINDING SITE FOR RESIDUE AF3 E 738 E AF3 738 Software 13 BINDING SITE FOR RESIDUE CA E 739 E CA 739 Software 4 E CYS 441 A CYS 26 5 1_555 E CYS 444 A CYS 29 5 1_555 E CYS 461 A CYS 46 5 1_555 E CYS 464 A CYS 49 5 1_555 E ARG 527 A ARG 112 5 1_555 E LYS 26 A LYS 335 7 1_555 E THR 27 A THR 336 7 1_555 E THR 44 A THR 353 7 1_555 E ASP 63 A ASP 372 7 1_555 E HOH 220 G HOH 7 1_555 E GDP 737 D GDP 7 1_555 E AF3 738 E AF3 7 1_555 E ALA 23 A ALA 332 20 1_555 E ALA 24 A ALA 333 20 1_555 E GLY 25 A GLY 334 20 1_555 E LYS 26 A LYS 335 20 1_555 E THR 27 A THR 336 20 1_555 E THR 28 A THR 337 20 1_555 E THR 41 A THR 350 20 1_555 E ASN 122 A ASN 431 20 1_555 E LYS 123 A LYS 432 20 1_555 E ASP 125 A ASP 434 20 1_555 E LEU 126 A LEU 435 20 1_555 E CYS 155 A CYS 464 20 1_555 E ALA 156 A ALA 465 20 1_555 E THR 157 A THR 466 20 1_555 E HOH 220 G HOH 20 1_555 E GLY 466 A GLY 51 20 1_555 E ARG 469 A ARG 54 20 1_555 E GLU 470 A GLU 55 20 1_555 E MG 736 C MG 20 1_555 E AF3 738 E AF3 20 1_555 E ASP 22 A ASP 331 13 1_555 E ALA 23 A ALA 332 13 1_555 E LYS 26 A LYS 335 13 1_555 E THR 27 A THR 336 13 1_555 E THR 44 A THR 353 13 1_555 E GLY 65 A GLY 374 13 1_555 E GLY 66 A GLY 375 13 1_555 E GLN 67 A GLN 376 13 1_555 E HOH 220 G HOH 13 1_555 E HOH 230 G HOH 13 1_555 E ARG 469 A ARG 54 13 1_555 E MG 736 C MG 13 1_555 E GDP 737 D GDP 13 1_555 E ASP 68 A ASP 377 4 1_555 E GLU 98 A GLU 407 4 1_555 E HOH 232 G HOH 4 1_555 E GLN 479 A GLN 64 4 1_555 171 P 62