0.009125 0.005268 0.000000 0.000000 0.010536 0.000000 0.000000 0.000000 0.010985 0.00000 0.00000 0.00000 Marx, A. Diederichs, K. Obeid, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 109.592 109.592 91.037 C10 H14 N5 O5 P 315.222 n 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C2 H3 O2 -1 59.044 ACETATE ION non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H16 N5 O11 P3 475.182 2',3'-dideoxyadenosine triphosphate non-polymer C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N P N 2 N O N 3 N O N 4 N O N 5 N O N 6 N C N 7 S C N 8 N O N 9 N C N 10 N C N 11 R C Y 12 N N Y 13 N C Y 14 N N Y 15 N C Y 16 N C N 17 N N Y 18 N N Y 19 N C Y 20 N N Y 21 N C N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N C N 37 N O N 38 N O N 39 N C N 40 N H N 41 N H N 42 N H N 43 N N N 44 S C N 45 N C N 46 N O N 47 N C N 48 N O N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N N N 57 S C N 58 N C N 59 N O N 60 N C N 61 N C N 62 N C N 63 N N N 64 N C N 65 N N N 66 N N N 67 N O N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N N N 84 S C N 85 N C N 86 N O N 87 N C N 88 N C N 89 N O N 90 N N N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N N N 101 S C N 102 N C N 103 N O N 104 N C N 105 N C N 106 N O N 107 N O N 108 N O N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N O N 117 N P N 118 N O N 119 N O N 120 N O N 121 N C N 122 R C N 123 N O N 124 S C N 125 N O N 126 N C N 127 R C Y 128 N N Y 129 N C Y 130 N N Y 131 N C Y 132 N C N 133 N N Y 134 N N Y 135 N C Y 136 N N Y 137 N C N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N O N 153 N P N 154 N O N 155 N O N 156 N O N 157 N C N 158 R C N 159 N O N 160 S C N 161 N O N 162 N C N 163 R C N 164 N N N 165 N C N 166 N O N 167 N N N 168 N C N 169 N N N 170 N C N 171 N C N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H Y 186 N N Y 187 N C Y 188 N N Y 189 N C Y 190 N C Y 191 N C N 192 N N Y 193 N N Y 194 N C Y 195 N N N 196 N P N 197 N P N 198 N P N 199 R C N 200 N O N 201 N O N 202 N O N 203 N C N 204 N O N 205 N O N 206 N O N 207 N C N 208 N O N 209 N O N 210 N O N 211 S C N 212 N O N 213 N C N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N O N 232 N P N 233 N O N 234 N O N 235 N O N 236 N C N 237 R C N 238 N O N 239 S C N 240 N O N 241 N C N 242 R C Y 243 N N Y 244 N C Y 245 N N Y 246 N C N 247 N C N 248 N O N 249 N N N 250 N C N 251 N N N 252 N N Y 253 N C N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N O N 269 N P N 270 N O N 271 N O N 272 N O N 273 N C N 274 R C N 275 N O N 276 S C N 277 N O N 278 N C N 279 R C N 280 N N N 281 N C N 282 N O N 283 N N N 284 N C N 285 N O N 286 N C N 287 N C N 288 N C N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C N 309 N C N 310 N C N 311 N O N 312 N N N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N N N 325 S C N 326 N C N 327 N O N 328 N C N 329 N C N 330 N C N 331 N O N 332 N O N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 N C N 345 N C N 346 N O N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N C N 354 N O N 355 N C N 356 N O N 357 N C N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N N N 368 S C N 369 N C N 370 N O N 371 N C Y 372 N C Y 373 N N Y 374 N C Y 375 N C Y 376 N N N 377 N O N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N O N 389 N H N 390 N H N 391 N N N 392 S C N 393 N C N 394 N O N 395 S C N 396 N C N 397 N C N 398 N C N 399 N O N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N N N 414 S C N 415 N C N 416 N O N 417 N C N 418 N C N 419 N C N 420 N C N 421 N O N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N N N 436 S C N 437 N C N 438 N O N 439 N C N 440 N C N 441 N C N 442 N C N 443 N N N 444 N O N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N N N 461 S C N 462 N C N 463 N O N 464 N C N 465 N C N 466 N S N 467 N C N 468 N O N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N MG N 481 N NA N 482 N N N 483 S C N 484 N C N 485 N O N 486 N C Y 487 N C Y 488 N C Y 489 N C Y 490 N C Y 491 N C Y 492 N C N 493 N O N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N N N 506 S C N 507 N C N 508 N O N 509 N C N 510 N C N 511 N C N 512 N O N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N N N 523 S C N 524 N C N 525 N O N 526 N C N 527 N O N 528 N O N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N N N 537 S C N 538 N C N 539 N O N 540 R C N 541 N O N 542 N C N 543 N O N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N N N 554 S C N 555 N C N 556 N O N 557 N C Y 558 N C Y 559 N C Y 560 N C Y 561 N N Y 562 N C Y 563 N C Y 564 N C Y 565 N C Y 566 N C N 567 N O N 568 N H N 569 N H N 570 N H N 571 N H N 572 N H N 573 N H N 574 N H N 575 N H N 576 N H N 577 N H N 578 N H N 579 N H N 580 N N N 581 S C N 582 N C N 583 N O N 584 N C Y 585 N C Y 586 N C Y 587 N C Y 588 N C Y 589 N C Y 590 N C N 591 N O N 592 N O N 593 N H N 594 N H N 595 N H N 596 N H N 597 N H N 598 N H N 599 N H N 600 N H N 601 N H N 602 N H N 603 N H N 604 N N N 605 S C N 606 N C N 607 N O N 608 N C N 609 N C N 610 N C N 611 N O N 612 N H N 613 N H N 614 N H N 615 N H N 616 N H N 617 N H N 618 N H N 619 N H N 620 N H N 621 N H N 622 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing Y 23 N sing Y 24 N sing Y 25 N doub N 26 N sing Y 27 N sing Y 28 N sing Y 29 N doub N 30 N sing Y 31 N doub N 32 N sing N 33 N sing Y 34 N sing Y 35 N doub N 36 N sing Y 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N doub N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N doub N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing Y 136 N sing Y 137 N sing Y 138 N doub N 139 N sing Y 140 N sing Y 141 N sing Y 142 N doub N 143 N sing Y 144 N doub N 145 N sing N 146 N sing Y 147 N sing Y 148 N doub N 149 N sing Y 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N doub N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing Y 186 N doub Y 187 N sing Y 188 N sing Y 189 N doub Y 190 N sing Y 191 N sing Y 192 N doub Y 193 N sing N 194 N sing Y 195 N doub Y 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N doub N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N doub N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing Y 256 N sing Y 257 N sing Y 258 N doub N 259 N sing Y 260 N sing N 261 N sing Y 262 N doub N 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N doub N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N doub N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N doub N 375 N sing N 376 N sing N 377 N sing N 378 N sing Y 379 N sing Y 380 N doub Y 381 N doub N 382 N sing Y 383 N sing N 384 N sing Y 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N doub N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N doub N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N doub N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N doub N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N doub N 483 N sing N 484 N sing N 485 N sing N 486 N sing Y 487 N doub Y 488 N sing Y 489 N sing N 490 N sing Y 491 N doub N 492 N sing Y 493 N doub N 494 N sing Y 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N doub N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N doub N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N doub N 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N doub N 552 N sing N 553 N sing N 554 N sing N 555 N sing Y 556 N doub Y 557 N sing Y 558 N sing N 559 N sing Y 560 N doub Y 561 N sing Y 562 N sing N 563 N sing Y 564 N sing Y 565 N doub N 566 N sing Y 567 N doub N 568 N sing Y 569 N sing N 570 N sing N 571 N sing N 572 N sing N 573 N sing N 574 N sing N 575 N sing N 576 N sing N 577 N sing N 578 N sing N 579 N doub N 580 N sing N 581 N sing N 582 N sing N 583 N sing Y 584 N doub Y 585 N sing Y 586 N sing N 587 N sing Y 588 N doub N 589 N sing Y 590 N doub N 591 N sing Y 592 N sing N 593 N sing N 594 N sing N 595 N sing N 596 N sing N 597 N sing N 598 N sing N 599 N sing N 600 N sing N 601 N sing N 602 N sing N 603 N doub N 604 N sing N 605 N sing N 606 N sing N 607 N sing N 608 N sing N 609 N sing N 610 N sing N 611 N sing N 612 N sing N 613 N sing N 614 N sing UK Embo J. EMJODG 0897 0261-4189 29 1738 1747 10.1038/emboj.2010.64 20400942 Replication through an abasic DNA lesion: structural basis for adenine selectivity 2010 10.2210/pdb3lwm/pdb pdb_00003lwm 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 vertically collimating mirror (M1, focus at infinity), followed by a Bartels Monochromator with dual channel cut crystals CCD 2009-09-18 MARMOSAIC 225 mm CCD Bartels Monochromator with dual channel cut crystals (DCCM) in (+--+) geometry, and a toroidal mirror (M2) SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 X06DA SLS 1.0000 SYNCHROTRON SLS BEAMLINE X06DA 60936.965 DNA polymerase I, thermostable 2.7.7.7 KLENOW FRAGMENT, UNP residues 293-832 1 man polymer DNA primer 3641.395 DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(2DA))-3') 1 syn polymer DNA template 3670.377 DNA (5'-D(*TP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3') 1 syn polymer 475.182 2',3'-dideoxyadenosine triphosphate 1 syn non-polymer 59.044 ACETATE ION 4 syn non-polymer 92.094 GLYCEROL 5 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 22.990 SODIUM ION 4 syn non-polymer 18.015 water 154 nat water Taq polymerase 1 no no ALEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDD PMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLD VAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKI LQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYS QIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAF IERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRL EEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE ALEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDD PMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLD VAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKI LQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYS QIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAF IERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRL EEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE A polypeptide(L) no yes (DG)(DA)(DC)(DC)(DA)(DC)(DG)(DG)(DC)(DG)(DC)(2DA) GACCACGGCGCA B polydeoxyribonucleotide no no (DT)(DG)(DC)(DG)(DC)(DC)(DG)(DT)(DG)(DG)(DT)(DC) TGCGCCGTGGTC C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample pol1, polA 271 Thermus aquaticus 562 Escherichia coli BL21 DE3 plasmid pET-21b 1 2.31 46.81 VAPOR DIFFUSION, SITTING DROP 8 0.05M TRIS HCl, pH 8, 0.2M ammonium chloride, 0.01M calcium chloride and 35% PEG 4000, VAPOR DIFFUSION, SITTING DROP, temperature 291K 291 -5.269 1 19 B 101 C 216 3.028 B_DG101:DC216_C 1 -6.978 -0.340 0.227 -0.031 3.515 1 20 B 102 C 215 2.130 B_DA102:DT215_C 2 -8.001 -0.212 -0.181 -0.146 9.181 1 19 B 103 C 214 1.176 B_DC103:DG214_C 3 -16.506 0.248 0.038 -0.243 -7.634 1 19 B 104 C 213 2.064 B_DC104:DG213_C 4 -14.886 0.234 0.123 -0.177 -1.224 1 20 B 105 C 212 -0.050 B_DA105:DT212_C 5 -13.220 0.248 0.005 -0.137 -1.837 1 19 B 106 C 211 0.186 B_DC106:DG211_C 6 -8.329 0.235 -0.019 -0.129 5.214 1 19 B 107 C 210 4.612 B_DG107:DC210_C 7 -22.744 -0.328 0.115 -0.139 -2.746 1 19 B 108 C 209 -0.290 B_DG108:DC209_C 8 -10.190 -0.063 0.076 -0.141 10.603 1 19 B 109 C 208 1.601 B_DC109:DG208_C 9 1.387 0.043 -0.461 0.008 10.721 1 19 B 110 C 207 0.895 B_DG110:DC207_C 10 -12.154 -0.075 0.432 -0.200 11.598 1 19 B 111 C 206 5.346 B_DC111:DG206_C 11 -8.802 0.335 -0.170 -0.142 25.694 1 20 B 112 C 205 4.178 B_2DA112:DT205_C 12 -5.771 0.241 0.104 -0.115 2.821 32.565 B B 101 102 13.337 C C 216 215 3.130 7.404 -0.232 -0.866 BB_DG101DA102:DT215DC216_CC 1 3.380 -6.089 31.558 -2.738 0.959 2.991 35.631 B B 102 103 6.546 C C 215 214 3.151 3.993 0.475 -0.851 BB_DA102DC103:DG214DT215_CC 2 -2.986 4.895 35.291 -1.938 -1.185 3.315 29.378 B B 103 104 11.242 C C 214 213 3.582 5.665 -0.929 -1.257 BB_DC103DC104:DG213DG214_CC 3 -1.234 2.448 28.812 -3.774 1.551 3.095 35.134 B B 104 105 16.890 C C 213 212 3.168 10.056 -0.664 0.338 BB_DC104DA105:DT212DG213_CC 4 2.026 -3.403 33.649 -0.912 1.397 3.303 31.735 B B 105 106 1.858 C C 212 211 3.312 1.016 0.315 -0.437 BB_DA105DC106:DG211DT212_CC 5 0.765 -1.400 31.710 -0.987 -0.433 3.083 32.862 B B 106 107 25.418 C C 211 210 3.121 13.946 0.297 0.570 BB_DC106DG107:DC210DG211_CC 6 0.802 -1.463 29.820 -1.373 -0.387 3.497 33.929 B B 107 108 -1.171 C C 210 209 3.446 -0.683 0.826 -0.302 BB_DG107DG108:DC209DC210_CC 7 2.280 -3.909 33.848 -0.401 -1.027 3.042 30.845 B B 108 109 11.153 C C 209 208 3.069 5.854 0.872 -0.467 BB_DG108DC109:DG208DC209_CC 8 6.537 -12.455 29.599 -1.966 -0.426 3.301 42.950 B B 109 110 11.548 C C 208 207 3.351 8.308 -0.451 0.044 BB_DC109DG110:DC207DG208_CC 9 -11.677 16.232 40.596 -0.804 -0.598 2.579 29.464 B B 110 111 25.764 C C 207 206 3.523 12.658 -0.203 -1.331 BB_DG110DC111:DG206DC207_CC 10 3.662 -7.454 26.412 -5.283 1.170 3.055 29.691 B B 111 112 5.460 C C 206 205 3.188 2.791 0.002 -1.195 BB_DC1112DA112:DT205DG206_CC 11 -2.359 4.615 29.470 -2.895 -0.479 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Database references Data collection Database references Derived calculations Refinement description 1 0 2010-05-05 1 1 2011-07-13 1 2 2014-02-12 1 3 2023-11-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2010-02-24 REL REL DDS 2',3'-dideoxyadenosine triphosphate ACT ACETATE ION GOL GLYCEROL MG MAGNESIUM ION NA SODIUM ION HOH water Synthetic DNA sample Synthetic DNA sample 3KTQ PDB ENTRY 3KTQ PDB experimental model DDS 1 4 DDS DDS 1 A ACT 833 5 ACT ACT 833 A ACT 2 5 ACT ACT 2 A ACT 3 5 ACT ACT 3 A GOL 834 6 GOL GOL 834 A GOL 4 6 GOL GOL 4 A MG 835 7 MG MG 835 A NA 836 8 NA NA 836 A NA 837 8 NA NA 837 A NA 5 8 NA NA 5 A NA 6 8 NA NA 6 A GOL 2 6 GOL GOL 2 B GOL 3 6 GOL GOL 3 B GOL 1 6 GOL GOL 1 B ACT 4 5 ACT ACT 4 C HOH 7 9 HOH HOH 7 A HOH 8 9 HOH HOH 8 A HOH 10 9 HOH HOH 10 A HOH 11 9 HOH HOH 11 A HOH 13 9 HOH HOH 13 A HOH 14 9 HOH HOH 14 A HOH 15 9 HOH HOH 15 A HOH 18 9 HOH HOH 18 A HOH 20 9 HOH HOH 20 A HOH 23 9 HOH HOH 23 A HOH 24 9 HOH HOH 24 A HOH 26 9 HOH HOH 26 A HOH 28 9 HOH HOH 28 A HOH 31 9 HOH HOH 31 A HOH 33 9 HOH HOH 33 A HOH 35 9 HOH HOH 35 A HOH 36 9 HOH HOH 36 A HOH 37 9 HOH HOH 37 A HOH 38 9 HOH HOH 38 A HOH 39 9 HOH HOH 39 A HOH 41 9 HOH HOH 41 A HOH 42 9 HOH HOH 42 A HOH 43 9 HOH HOH 43 A HOH 45 9 HOH HOH 45 A HOH 46 9 HOH HOH 46 A HOH 47 9 HOH HOH 47 A HOH 48 9 HOH HOH 48 A HOH 49 9 HOH HOH 49 A HOH 50 9 HOH HOH 50 A HOH 52 9 HOH HOH 52 A HOH 53 9 HOH HOH 53 A HOH 56 9 HOH HOH 56 A HOH 57 9 HOH HOH 57 A HOH 58 9 HOH HOH 58 A HOH 62 9 HOH HOH 62 A HOH 63 9 HOH HOH 63 A HOH 64 9 HOH HOH 64 A HOH 65 9 HOH HOH 65 A HOH 66 9 HOH HOH 66 A HOH 67 9 HOH HOH 67 A HOH 69 9 HOH HOH 69 A HOH 71 9 HOH HOH 71 A HOH 73 9 HOH HOH 73 A HOH 74 9 HOH HOH 74 A HOH 75 9 HOH HOH 75 A HOH 76 9 HOH HOH 76 A HOH 77 9 HOH HOH 77 A HOH 79 9 HOH HOH 79 A HOH 80 9 HOH HOH 80 A HOH 82 9 HOH HOH 82 A HOH 83 9 HOH HOH 83 A HOH 84 9 HOH HOH 84 A HOH 85 9 HOH HOH 85 A HOH 86 9 HOH HOH 86 A HOH 88 9 HOH HOH 88 A HOH 90 9 HOH HOH 90 A HOH 93 9 HOH HOH 93 A HOH 95 9 HOH HOH 95 A HOH 97 9 HOH HOH 97 A HOH 100 9 HOH HOH 100 A HOH 102 9 HOH HOH 102 A HOH 103 9 HOH HOH 103 A HOH 104 9 HOH HOH 104 A HOH 106 9 HOH HOH 106 A HOH 107 9 HOH HOH 107 A HOH 108 9 HOH HOH 108 A HOH 109 9 HOH HOH 109 A HOH 110 9 HOH HOH 110 A HOH 111 9 HOH HOH 111 A HOH 112 9 HOH HOH 112 A HOH 114 9 HOH HOH 114 A HOH 118 9 HOH HOH 118 A HOH 120 9 HOH HOH 120 A HOH 121 9 HOH HOH 121 A HOH 122 9 HOH HOH 122 A HOH 124 9 HOH HOH 124 A HOH 125 9 HOH HOH 125 A HOH 126 9 HOH HOH 126 A HOH 127 9 HOH HOH 127 A HOH 128 9 HOH HOH 128 A HOH 132 9 HOH HOH 132 A HOH 133 9 HOH HOH 133 A HOH 135 9 HOH HOH 135 A HOH 136 9 HOH HOH 136 A HOH 137 9 HOH HOH 137 A HOH 139 9 HOH HOH 139 A HOH 140 9 HOH HOH 140 A HOH 141 9 HOH HOH 141 A HOH 144 9 HOH HOH 144 A HOH 145 9 HOH HOH 145 A HOH 148 9 HOH HOH 148 A HOH 149 9 HOH HOH 149 A HOH 152 9 HOH HOH 152 A HOH 154 9 HOH HOH 154 A HOH 155 9 HOH HOH 155 A HOH 156 9 HOH HOH 156 A HOH 157 9 HOH HOH 157 A HOH 159 9 HOH HOH 159 A HOH 160 9 HOH HOH 160 A HOH 162 9 HOH HOH 162 A HOH 165 9 HOH HOH 165 A HOH 166 9 HOH HOH 166 A HOH 167 9 HOH HOH 167 A HOH 170 9 HOH HOH 170 A HOH 171 9 HOH HOH 171 A HOH 172 9 HOH HOH 172 A HOH 838 9 HOH HOH 838 A HOH 839 9 HOH HOH 839 A HOH 840 9 HOH HOH 840 A HOH 841 9 HOH HOH 841 A HOH 842 9 HOH HOH 842 A HOH 843 9 HOH HOH 843 A HOH 844 9 HOH HOH 844 A HOH 845 9 HOH HOH 845 A HOH 16 9 HOH HOH 16 B HOH 22 9 HOH HOH 22 B HOH 27 9 HOH HOH 27 B HOH 68 9 HOH HOH 68 B HOH 70 9 HOH HOH 70 B HOH 72 9 HOH HOH 72 B HOH 91 9 HOH HOH 91 B HOH 94 9 HOH HOH 94 B HOH 98 9 HOH HOH 98 B HOH 113 9 HOH HOH 113 B HOH 117 9 HOH HOH 117 B HOH 130 9 HOH HOH 130 B HOH 131 9 HOH HOH 131 B HOH 142 9 HOH HOH 142 B HOH 153 9 HOH HOH 153 B HOH 173 9 HOH HOH 173 B HOH 9 9 HOH HOH 9 C HOH 12 9 HOH HOH 12 C HOH 17 9 HOH HOH 17 C HOH 19 9 HOH HOH 19 C HOH 21 9 HOH HOH 21 C HOH 25 9 HOH HOH 25 C HOH 29 9 HOH HOH 29 C HOH 32 9 HOH HOH 32 C HOH 44 9 HOH HOH 44 C HOH 55 9 HOH HOH 55 C HOH 59 9 HOH HOH 59 C HOH 61 9 HOH HOH 61 C HOH 81 9 HOH HOH 81 C HOH 87 9 HOH HOH 87 C HOH 89 9 HOH HOH 89 C HOH 92 9 HOH HOH 92 C HOH 101 9 HOH HOH 101 C HOH 113 9 HOH HOH 113 C HOH 138 9 HOH HOH 138 C HOH 150 9 HOH HOH 150 C HOH 151 9 HOH HOH 151 C HOH 168 9 HOH HOH 168 C HOH 174 9 HOH HOH 174 C HOH 175 9 HOH HOH 175 C n 1 293 A n 2 294 A GLU 295 n 3 GLU 295 A GLU 296 n 4 GLU 296 A ALA 297 n 5 ALA 297 A PRO 298 n 6 PRO 298 A TRP 299 n 7 TRP 299 A PRO 300 n 8 PRO 300 A PRO 301 n 9 PRO 301 A PRO 302 n 10 PRO 302 A GLU 303 n 11 GLU 303 A GLY 304 n 12 GLY 304 A ALA 305 n 13 ALA 305 A PHE 306 n 14 PHE 306 A VAL 307 n 15 VAL 307 A GLY 308 n 16 GLY 308 A PHE 309 n 17 PHE 309 A VAL 310 n 18 VAL 310 A LEU 311 n 19 LEU 311 A SER 312 n 20 SER 312 A ARG 313 n 21 ARG 313 A LYS 314 n 22 LYS 314 A GLU 315 n 23 GLU 315 A PRO 316 n 24 PRO 316 A MET 317 n 25 MET 317 A TRP 318 n 26 TRP 318 A ALA 319 n 27 ALA 319 A ASP 320 n 28 ASP 320 A LEU 321 n 29 LEU 321 A LEU 322 n 30 LEU 322 A ALA 323 n 31 ALA 323 A LEU 324 n 32 LEU 324 A ALA 325 n 33 ALA 325 A ALA 326 n 34 ALA 326 A ALA 327 n 35 ALA 327 A ARG 328 n 36 ARG 328 A GLY 329 n 37 GLY 329 A GLY 330 n 38 GLY 330 A ARG 331 n 39 ARG 331 A VAL 332 n 40 VAL 332 A HIS 333 n 41 HIS 333 A ARG 334 n 42 ARG 334 A ALA 335 n 43 ALA 335 A PRO 336 n 44 PRO 336 A GLU 337 n 45 GLU 337 A PRO 338 n 46 PRO 338 A TYR 339 n 47 TYR 339 A LYS 340 n 48 LYS 340 A ALA 341 n 49 ALA 341 A LEU 342 n 50 LEU 342 A ARG 343 n 51 ARG 343 A ASP 344 n 52 ASP 344 A LEU 345 n 53 LEU 345 A LYS 346 n 54 LYS 346 A GLU 347 n 55 GLU 347 A ALA 348 n 56 ALA 348 A ARG 349 n 57 ARG 349 A GLY 350 n 58 GLY 350 A LEU 351 n 59 LEU 351 A LEU 352 n 60 LEU 352 A ALA 353 n 61 ALA 353 A LYS 354 n 62 LYS 354 A ASP 355 n 63 ASP 355 A LEU 356 n 64 LEU 356 A SER 357 n 65 SER 357 A VAL 358 n 66 VAL 358 A LEU 359 n 67 LEU 359 A ALA 360 n 68 ALA 360 A LEU 361 n 69 LEU 361 A ARG 362 n 70 ARG 362 A GLU 363 n 71 GLU 363 A GLY 364 n 72 GLY 364 A LEU 365 n 73 LEU 365 A GLY 366 n 74 GLY 366 A LEU 367 n 75 LEU 367 A PRO 368 n 76 PRO 368 A PRO 369 n 77 PRO 369 A GLY 370 n 78 GLY 370 A ASP 371 n 79 ASP 371 A ASP 372 n 80 ASP 372 A PRO 373 n 81 PRO 373 A MET 374 n 82 MET 374 A LEU 375 n 83 LEU 375 A LEU 376 n 84 LEU 376 A ALA 377 n 85 ALA 377 A TYR 378 n 86 TYR 378 A LEU 379 n 87 LEU 379 A LEU 380 n 88 LEU 380 A ASP 381 n 89 ASP 381 A PRO 382 n 90 PRO 382 A SER 383 n 91 SER 383 A ASN 384 n 92 ASN 384 A THR 385 n 93 THR 385 A THR 386 n 94 THR 386 A PRO 387 n 95 PRO 387 A GLU 388 n 96 GLU 388 A GLY 389 n 97 GLY 389 A VAL 390 n 98 VAL 390 A ALA 391 n 99 ALA 391 A ARG 392 n 100 ARG 392 A ARG 393 n 101 ARG 393 A TYR 394 n 102 TYR 394 A GLY 395 n 103 GLY 395 A GLY 396 n 104 GLY 396 A GLU 397 n 105 GLU 397 A TRP 398 n 106 TRP 398 A THR 399 n 107 THR 399 A GLU 400 n 108 GLU 400 A GLU 401 n 109 GLU 401 A ALA 402 n 110 ALA 402 A GLY 403 n 111 GLY 403 A GLU 404 n 112 GLU 404 A ARG 405 n 113 ARG 405 A ALA 406 n 114 ALA 406 A ALA 407 n 115 ALA 407 A LEU 408 n 116 LEU 408 A SER 409 n 117 SER 409 A GLU 410 n 118 GLU 410 A ARG 411 n 119 ARG 411 A LEU 412 n 120 LEU 412 A PHE 413 n 121 PHE 413 A ALA 414 n 122 ALA 414 A ASN 415 n 123 ASN 415 A LEU 416 n 124 LEU 416 A TRP 417 n 125 TRP 417 A GLY 418 n 126 GLY 418 A ARG 419 n 127 ARG 419 A LEU 420 n 128 LEU 420 A GLU 421 n 129 GLU 421 A GLY 422 n 130 GLY 422 A GLU 423 n 131 GLU 423 A GLU 424 n 132 GLU 424 A ARG 425 n 133 ARG 425 A LEU 426 n 134 LEU 426 A LEU 427 n 135 LEU 427 A TRP 428 n 136 TRP 428 A LEU 429 n 137 LEU 429 A TYR 430 n 138 TYR 430 A ARG 431 n 139 ARG 431 A GLU 432 n 140 GLU 432 A VAL 433 n 141 VAL 433 A GLU 434 n 142 GLU 434 A ARG 435 n 143 ARG 435 A PRO 436 n 144 PRO 436 A LEU 437 n 145 LEU 437 A SER 438 n 146 SER 438 A ALA 439 n 147 ALA 439 A VAL 440 n 148 VAL 440 A LEU 441 n 149 LEU 441 A ALA 442 n 150 ALA 442 A HIS 443 n 151 HIS 443 A MET 444 n 152 MET 444 A GLU 445 n 153 GLU 445 A ALA 446 n 154 ALA 446 A THR 447 n 155 THR 447 A GLY 448 n 156 GLY 448 A VAL 449 n 157 VAL 449 A ARG 450 n 158 ARG 450 A LEU 451 n 159 LEU 451 A ASP 452 n 160 ASP 452 A VAL 453 n 161 VAL 453 A ALA 454 n 162 ALA 454 A TYR 455 n 163 TYR 455 A LEU 456 n 164 LEU 456 A ARG 457 n 165 ARG 457 A ALA 458 n 166 ALA 458 A LEU 459 n 167 LEU 459 A SER 460 n 168 SER 460 A LEU 461 n 169 LEU 461 A GLU 462 n 170 GLU 462 A VAL 463 n 171 VAL 463 A ALA 464 n 172 ALA 464 A GLU 465 n 173 GLU 465 A GLU 466 n 174 GLU 466 A ILE 467 n 175 ILE 467 A ALA 468 n 176 ALA 468 A ARG 469 n 177 ARG 469 A LEU 470 n 178 LEU 470 A GLU 471 n 179 GLU 471 A ALA 472 n 180 ALA 472 A GLU 473 n 181 GLU 473 A VAL 474 n 182 VAL 474 A PHE 475 n 183 PHE 475 A ARG 476 n 184 ARG 476 A LEU 477 n 185 LEU 477 A ALA 478 n 186 ALA 478 A GLY 479 n 187 GLY 479 A HIS 480 n 188 HIS 480 A PRO 481 n 189 PRO 481 A PHE 482 n 190 PHE 482 A ASN 483 n 191 ASN 483 A LEU 484 n 192 LEU 484 A ASN 485 n 193 ASN 485 A SER 486 n 194 SER 486 A ARG 487 n 195 ARG 487 A ASP 488 n 196 ASP 488 A GLN 489 n 197 GLN 489 A LEU 490 n 198 LEU 490 A GLU 491 n 199 GLU 491 A ARG 492 n 200 ARG 492 A VAL 493 n 201 VAL 493 A LEU 494 n 202 LEU 494 A PHE 495 n 203 PHE 495 A ASP 496 n 204 ASP 496 A GLU 497 n 205 GLU 497 A LEU 498 n 206 LEU 498 A GLY 499 n 207 GLY 499 A LEU 500 n 208 LEU 500 A PRO 501 n 209 PRO 501 A ALA 502 n 210 ALA 502 A ILE 503 n 211 ILE 503 A GLY 504 n 212 GLY 504 A LYS 505 n 213 LYS 505 A THR 506 n 214 THR 506 A GLU 507 n 215 GLU 507 A LYS 508 n 216 LYS 508 A THR 509 n 217 THR 509 A GLY 510 n 218 GLY 510 A LYS 511 n 219 LYS 511 A ARG 512 n 220 ARG 512 A SER 513 n 221 SER 513 A THR 514 n 222 THR 514 A SER 515 n 223 SER 515 A ALA 516 n 224 ALA 516 A ALA 517 n 225 ALA 517 A VAL 518 n 226 VAL 518 A LEU 519 n 227 LEU 519 A GLU 520 n 228 GLU 520 A ALA 521 n 229 ALA 521 A LEU 522 n 230 LEU 522 A ARG 523 n 231 ARG 523 A GLU 524 n 232 GLU 524 A ALA 525 n 233 ALA 525 A HIS 526 n 234 HIS 526 A PRO 527 n 235 PRO 527 A ILE 528 n 236 ILE 528 A VAL 529 n 237 VAL 529 A GLU 530 n 238 GLU 530 A LYS 531 n 239 LYS 531 A ILE 532 n 240 ILE 532 A LEU 533 n 241 LEU 533 A GLN 534 n 242 GLN 534 A TYR 535 n 243 TYR 535 A ARG 536 n 244 ARG 536 A GLU 537 n 245 GLU 537 A LEU 538 n 246 LEU 538 A THR 539 n 247 THR 539 A LYS 540 n 248 LYS 540 A LEU 541 n 249 LEU 541 A LYS 542 n 250 LYS 542 A SER 543 n 251 SER 543 A THR 544 n 252 THR 544 A TYR 545 n 253 TYR 545 A ILE 546 n 254 ILE 546 A ASP 547 n 255 ASP 547 A PRO 548 n 256 PRO 548 A LEU 549 n 257 LEU 549 A PRO 550 n 258 PRO 550 A ASP 551 n 259 ASP 551 A LEU 552 n 260 LEU 552 A ILE 553 n 261 ILE 553 A HIS 554 n 262 HIS 554 A PRO 555 n 263 PRO 555 A ARG 556 n 264 ARG 556 A THR 557 n 265 THR 557 A GLY 558 n 266 GLY 558 A ARG 559 n 267 ARG 559 A LEU 560 n 268 LEU 560 A HIS 561 n 269 HIS 561 A THR 562 n 270 THR 562 A ARG 563 n 271 ARG 563 A PHE 564 n 272 PHE 564 A ASN 565 n 273 ASN 565 A GLN 566 n 274 GLN 566 A THR 567 n 275 THR 567 A ALA 568 n 276 ALA 568 A THR 569 n 277 THR 569 A ALA 570 n 278 ALA 570 A THR 571 n 279 THR 571 A GLY 572 n 280 GLY 572 A ARG 573 n 281 ARG 573 A LEU 574 n 282 LEU 574 A SER 575 n 283 SER 575 A SER 576 n 284 SER 576 A SER 577 n 285 SER 577 A ASP 578 n 286 ASP 578 A PRO 579 n 287 PRO 579 A ASN 580 n 288 ASN 580 A LEU 581 n 289 LEU 581 A GLN 582 n 290 GLN 582 A ASN 583 n 291 ASN 583 A ILE 584 n 292 ILE 584 A PRO 585 n 293 PRO 585 A VAL 586 n 294 VAL 586 A ARG 587 n 295 ARG 587 A THR 588 n 296 THR 588 A PRO 589 n 297 PRO 589 A LEU 590 n 298 LEU 590 A GLY 591 n 299 GLY 591 A GLN 592 n 300 GLN 592 A ARG 593 n 301 ARG 593 A ILE 594 n 302 ILE 594 A ARG 595 n 303 ARG 595 A ARG 596 n 304 ARG 596 A ALA 597 n 305 ALA 597 A PHE 598 n 306 PHE 598 A ILE 599 n 307 ILE 599 A ALA 600 n 308 ALA 600 A GLU 601 n 309 GLU 601 A GLU 602 n 310 GLU 602 A GLY 603 n 311 GLY 603 A TRP 604 n 312 TRP 604 A LEU 605 n 313 LEU 605 A LEU 606 n 314 LEU 606 A VAL 607 n 315 VAL 607 A ALA 608 n 316 ALA 608 A LEU 609 n 317 LEU 609 A ASP 610 n 318 ASP 610 A TYR 611 n 319 TYR 611 A SER 612 n 320 SER 612 A GLN 613 n 321 GLN 613 A ILE 614 n 322 ILE 614 A GLU 615 n 323 GLU 615 A LEU 616 n 324 LEU 616 A ARG 617 n 325 ARG 617 A VAL 618 n 326 VAL 618 A LEU 619 n 327 LEU 619 A ALA 620 n 328 ALA 620 A HIS 621 n 329 HIS 621 A LEU 622 n 330 LEU 622 A SER 623 n 331 SER 623 A GLY 624 n 332 GLY 624 A ASP 625 n 333 ASP 625 A GLU 626 n 334 GLU 626 A ASN 627 n 335 ASN 627 A LEU 628 n 336 LEU 628 A ILE 629 n 337 ILE 629 A ARG 630 n 338 ARG 630 A VAL 631 n 339 VAL 631 A PHE 632 n 340 PHE 632 A GLN 633 n 341 GLN 633 A GLU 634 n 342 GLU 634 A GLY 635 n 343 GLY 635 A ARG 636 n 344 ARG 636 A ASP 637 n 345 ASP 637 A ILE 638 n 346 ILE 638 A HIS 639 n 347 HIS 639 A THR 640 n 348 THR 640 A GLU 641 n 349 GLU 641 A THR 642 n 350 THR 642 A ALA 643 n 351 ALA 643 A SER 644 n 352 SER 644 A TRP 645 n 353 TRP 645 A MET 646 n 354 MET 646 A PHE 647 n 355 PHE 647 A GLY 648 n 356 GLY 648 A VAL 649 n 357 VAL 649 A PRO 650 n 358 PRO 650 A ARG 651 n 359 ARG 651 A GLU 652 n 360 GLU 652 A ALA 653 n 361 ALA 653 A VAL 654 n 362 VAL 654 A ASP 655 n 363 ASP 655 A PRO 656 n 364 PRO 656 A LEU 657 n 365 LEU 657 A MET 658 n 366 MET 658 A ARG 659 n 367 ARG 659 A ARG 660 n 368 ARG 660 A ALA 661 n 369 ALA 661 A ALA 662 n 370 ALA 662 A LYS 663 n 371 LYS 663 A THR 664 n 372 THR 664 A ILE 665 n 373 ILE 665 A ASN 666 n 374 ASN 666 A PHE 667 n 375 PHE 667 A GLY 668 n 376 GLY 668 A VAL 669 n 377 VAL 669 A LEU 670 n 378 LEU 670 A TYR 671 n 379 TYR 671 A GLY 672 n 380 GLY 672 A MET 673 n 381 MET 673 A SER 674 n 382 SER 674 A ALA 675 n 383 ALA 675 A HIS 676 n 384 HIS 676 A ARG 677 n 385 ARG 677 A LEU 678 n 386 LEU 678 A SER 679 n 387 SER 679 A GLN 680 n 388 GLN 680 A GLU 681 n 389 GLU 681 A LEU 682 n 390 LEU 682 A ALA 683 n 391 ALA 683 A ILE 684 n 392 ILE 684 A PRO 685 n 393 PRO 685 A TYR 686 n 394 TYR 686 A GLU 687 n 395 GLU 687 A GLU 688 n 396 GLU 688 A ALA 689 n 397 ALA 689 A GLN 690 n 398 GLN 690 A ALA 691 n 399 ALA 691 A PHE 692 n 400 PHE 692 A ILE 693 n 401 ILE 693 A GLU 694 n 402 GLU 694 A ARG 695 n 403 ARG 695 A TYR 696 n 404 TYR 696 A PHE 697 n 405 PHE 697 A GLN 698 n 406 GLN 698 A SER 699 n 407 SER 699 A PHE 700 n 408 PHE 700 A PRO 701 n 409 PRO 701 A LYS 702 n 410 LYS 702 A VAL 703 n 411 VAL 703 A ARG 704 n 412 ARG 704 A ALA 705 n 413 ALA 705 A TRP 706 n 414 TRP 706 A ILE 707 n 415 ILE 707 A GLU 708 n 416 GLU 708 A LYS 709 n 417 LYS 709 A THR 710 n 418 THR 710 A LEU 711 n 419 LEU 711 A GLU 712 n 420 GLU 712 A GLU 713 n 421 GLU 713 A GLY 714 n 422 GLY 714 A ARG 715 n 423 ARG 715 A ARG 716 n 424 ARG 716 A ARG 717 n 425 ARG 717 A GLY 718 n 426 GLY 718 A TYR 719 n 427 TYR 719 A VAL 720 n 428 VAL 720 A GLU 721 n 429 GLU 721 A THR 722 n 430 THR 722 A LEU 723 n 431 LEU 723 A PHE 724 n 432 PHE 724 A GLY 725 n 433 GLY 725 A ARG 726 n 434 ARG 726 A ARG 727 n 435 ARG 727 A ARG 728 n 436 ARG 728 A TYR 729 n 437 TYR 729 A VAL 730 n 438 VAL 730 A PRO 731 n 439 PRO 731 A ASP 732 n 440 ASP 732 A LEU 733 n 441 LEU 733 A GLU 734 n 442 GLU 734 A ALA 735 n 443 ALA 735 A ARG 736 n 444 ARG 736 A VAL 737 n 445 VAL 737 A LYS 738 n 446 LYS 738 A SER 739 n 447 SER 739 A VAL 740 n 448 VAL 740 A ARG 741 n 449 ARG 741 A GLU 742 n 450 GLU 742 A ALA 743 n 451 ALA 743 A ALA 744 n 452 ALA 744 A GLU 745 n 453 GLU 745 A ARG 746 n 454 ARG 746 A MET 747 n 455 MET 747 A ALA 748 n 456 ALA 748 A PHE 749 n 457 PHE 749 A ASN 750 n 458 ASN 750 A MET 751 n 459 MET 751 A PRO 752 n 460 PRO 752 A VAL 753 n 461 VAL 753 A GLN 754 n 462 GLN 754 A GLY 755 n 463 GLY 755 A THR 756 n 464 THR 756 A ALA 757 n 465 ALA 757 A ALA 758 n 466 ALA 758 A ASP 759 n 467 ASP 759 A LEU 760 n 468 LEU 760 A MET 761 n 469 MET 761 A LYS 762 n 470 LYS 762 A LEU 763 n 471 LEU 763 A ALA 764 n 472 ALA 764 A MET 765 n 473 MET 765 A VAL 766 n 474 VAL 766 A LYS 767 n 475 LYS 767 A LEU 768 n 476 LEU 768 A PHE 769 n 477 PHE 769 A PRO 770 n 478 PRO 770 A ARG 771 n 479 ARG 771 A LEU 772 n 480 LEU 772 A GLU 773 n 481 GLU 773 A GLU 774 n 482 GLU 774 A MET 775 n 483 MET 775 A GLY 776 n 484 GLY 776 A ALA 777 n 485 ALA 777 A ARG 778 n 486 ARG 778 A MET 779 n 487 MET 779 A LEU 780 n 488 LEU 780 A LEU 781 n 489 LEU 781 A GLN 782 n 490 GLN 782 A VAL 783 n 491 VAL 783 A HIS 784 n 492 HIS 784 A ASP 785 n 493 ASP 785 A GLU 786 n 494 GLU 786 A LEU 787 n 495 LEU 787 A VAL 788 n 496 VAL 788 A LEU 789 n 497 LEU 789 A GLU 790 n 498 GLU 790 A ALA 791 n 499 ALA 791 A PRO 792 n 500 PRO 792 A LYS 793 n 501 LYS 793 A GLU 794 n 502 GLU 794 A ARG 795 n 503 ARG 795 A ALA 796 n 504 ALA 796 A GLU 797 n 505 GLU 797 A ALA 798 n 506 ALA 798 A VAL 799 n 507 VAL 799 A ALA 800 n 508 ALA 800 A ARG 801 n 509 ARG 801 A LEU 802 n 510 LEU 802 A ALA 803 n 511 ALA 803 A LYS 804 n 512 LYS 804 A GLU 805 n 513 GLU 805 A VAL 806 n 514 VAL 806 A MET 807 n 515 MET 807 A GLU 808 n 516 GLU 808 A GLY 809 n 517 GLY 809 A VAL 810 n 518 VAL 810 A TYR 811 n 519 TYR 811 A PRO 812 n 520 PRO 812 A LEU 813 n 521 LEU 813 A ALA 814 n 522 ALA 814 A VAL 815 n 523 VAL 815 A PRO 816 n 524 PRO 816 A LEU 817 n 525 LEU 817 A GLU 818 n 526 GLU 818 A VAL 819 n 527 VAL 819 A GLU 820 n 528 GLU 820 A VAL 821 n 529 VAL 821 A GLY 822 n 530 GLY 822 A ILE 823 n 531 ILE 823 A GLY 824 n 532 GLY 824 A GLU 825 n 533 GLU 825 A ASP 826 n 534 ASP 826 A TRP 827 n 535 TRP 827 A LEU 828 n 536 LEU 828 A SER 829 n 537 SER 829 A ALA 830 n 538 ALA 830 A LYS 831 n 539 LYS 831 A GLU 832 n 540 GLU 832 A DG 101 n 1 DG 101 B DA 102 n 2 DA 102 B DC 103 n 3 DC 103 B DC 104 n 4 DC 104 B DA 105 n 5 DA 105 B DC 106 n 6 DC 106 B DG 107 n 7 DG 107 B DG 108 n 8 DG 108 B DC 109 n 9 DC 109 B DG 110 n 10 DG 110 B DC 111 n 11 DC 111 B 2DA 112 n 12 2DA 112 B DT 205 n 1 DT 205 C DG 206 n 2 DG 206 C DC 207 n 3 DC 207 C DG 208 n 4 DG 208 C DC 209 n 5 DC 209 C DC 210 n 6 DC 210 C DG 211 n 7 DG 211 C DT 212 n 8 DT 212 C DG 213 n 9 DG 213 C DG 214 n 10 DG 214 C DT 215 n 11 DT 215 C DC 216 n 12 DC 216 C 0.7156 0.5479 -0.2393 1.0310 -0.5447 1.4843 -0.0890 0.1275 -0.1115 -0.0437 0.0589 -0.2013 -0.1513 -0.1975 0.0019 0.1569 -0.0766 0.0407 0.1560 -0.0103 0.1390 refined 36.1337 -26.1597 -9.1061 X-RAY DIFFRACTION 3.4787 -1.0148 0.0221 3.4590 -0.3111 0.0327 -0.1548 -0.3797 0.1756 0.7460 0.4264 -0.0369 -0.9634 -0.5499 -0.3272 0.5885 0.3249 0.0602 0.8823 0.0150 0.1705 refined 7.0350 -13.4529 -3.3222 X-RAY DIFFRACTION 0.8626 0.0973 0.3335 0.6606 0.1459 1.2148 -0.2000 0.2479 -0.0482 -0.2465 0.2650 0.0372 -0.1045 -0.6336 -0.0911 0.1281 -0.0811 0.0034 0.4171 0.0263 0.0508 refined 19.0360 -26.2055 -14.8654 X-RAY DIFFRACTION 2.5249 -0.6845 1.1578 2.4766 -2.4676 2.6790 0.0342 0.3413 -0.0504 0.2826 -0.2943 -0.2316 -0.3927 0.2079 0.2459 0.1621 -0.0092 -0.0240 0.1830 0.0191 0.1609 refined 37.1607 -23.2186 4.2743 X-RAY DIFFRACTION 2.6090 1.3018 1.3380 1.3929 0.0126 2.6524 -0.3489 -0.0128 -0.3451 0.0212 0.3084 -0.2301 -0.1953 0.1377 0.0244 0.1546 0.0565 -0.0400 0.2480 0.0151 0.1851 refined 38.5396 -24.2659 5.6104 X-RAY DIFFRACTION A 295 A 627 X-RAY DIFFRACTION 1 (chain A and resid 295:627) A 628 A 697 X-RAY DIFFRACTION 2 (chain A and resid 628:697) A 698 A 832 X-RAY DIFFRACTION 3 (chain A and resid 698:832) B 101 B 112 X-RAY DIFFRACTION 4 (chain B and resid 101:112) C 204 C 216 X-RAY DIFFRACTION 5 (chain C and resid 204:216) author_and_software_defined_assembly PISA 3 trimeric 5620 -12 24960 A DDS 1 D O2A DDS 1_555 A MG 835 J MG MG 1_555 A DDS 1 D O3G DDS 1_555 73.2 A DDS 1 D O2A DDS 1_555 A MG 835 J MG MG 1_555 A DDS 1 D O1B DDS 1_555 69.2 A DDS 1 D O3G DDS 1_555 A MG 835 J MG MG 1_555 A DDS 1 D O1B DDS 1_555 63.9 A DDS 1 D O2A DDS 1_555 A MG 835 J MG MG 1_555 A HOH 46 S O HOH 1_555 144.7 A DDS 1 D O3G DDS 1_555 A MG 835 J MG MG 1_555 A HOH 46 S O HOH 1_555 79.0 A DDS 1 D O1B DDS 1_555 A MG 835 J MG MG 1_555 A HOH 46 S O HOH 1_555 79.3 A DDS 1 D O2A DDS 1_555 A MG 835 J MG MG 1_555 A HOH 166 S O HOH 1_555 95.3 A DDS 1 D O3G DDS 1_555 A MG 835 J MG MG 1_555 A HOH 166 S O HOH 1_555 135.1 A DDS 1 D O1B DDS 1_555 A MG 835 J MG MG 1_555 A HOH 166 S O HOH 1_555 71.4 A HOH 46 S O HOH 1_555 A MG 835 J MG MG 1_555 A HOH 166 S O HOH 1_555 89.2 B 2DA 112 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE B 2DA 12 DA 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLY 308 A N GLY 16 A O ALA 325 A O ALA 33 A N ALA 326 A N ALA 34 A O HIS 333 A O HIS 41 A N ARG 450 A N ARG 158 A O ILE 599 A O ILE 307 A N ARG 563 A N ARG 271 A O SER 577 A O SER 285 A N ARG 778 A N ARG 486 A O GLU 790 A O GLU 498 A O LEU 789 A O LEU 497 A N VAL 607 A N VAL 315 A N LEU 606 A N LEU 314 A O GLY 824 A O GLY 532 A N VAL 720 A N VAL 428 A O ARG 728 A O ARG 436 1 A ACT 3 G ACT 1 A ACT 3 G ACT 1 A CG1 VAL 649 A CG1 VAL 357 1 Y 1 A CG2 VAL 649 A CG2 VAL 357 1 Y 1 A ALA 293 A ALA 1 1 Y 1 A LEU 294 A LEU 2 1 Y 1 3.67 0.30 108.30 111.97 B B B O4' C1' N9 DG DG DG 108 108 108 N 1 2.85 0.30 108.30 111.15 B B B O4' C1' N1 DC DC DC 109 109 109 N 1 2.31 0.30 108.30 110.61 B B B O4' C1' N9 DG DG DG 110 110 110 N 1 -7.80 1.20 119.70 111.90 B B B C3' O3' P DC DC 2DA 111 111 112 Y 1 14.77 1.10 110.50 125.27 B B B O3' P OP1 DC 2DA 2DA 111 112 112 Y 1 A THR 399 -108.50 -169.86 1 A VAL 433 -125.27 -67.98 1 A ILE 503 -101.12 -69.03 1 A HIS 526 -175.70 137.56 1 A TYR 545 -124.34 -59.31 1 A VAL 586 -165.73 -19.79 1 A VAL 649 174.45 178.50 1 A ARG 651 -86.08 36.74 1 A ALA 653 -137.63 -113.32 1 A ASP 732 -64.62 8.63 1 A HIS 784 70.80 -61.96 1 A TYR 811 -168.84 95.94 182.08 52.4 14.97 2.176 0.000 -0.000 2.176 0.000 -4.352 0.2284 0.1834 0.1857 0.1857 2.186 47.455 1639 32553 32553 5.03 98.46 1.00 0.35 0.843 0.29 RANDOM 1 THROUGHOUT 0 -3 MOLECULAR REPLACEMENT 22.850 0.90 1.11 PDB ENTRY 3KTQ ML FLAT BULK SOLVENT MODEL 44.855 0.369 0.29 2.186 47.455 154 4995 80 485 4276 0.006 4986 0.851 6835 17.148 1917 0.053 745 0.003 806 0.3083 0.2608 2.2502 99 2161 83.00 0.3133 0.2424 2.3229 140 2517 98.00 0.2995 0.2265 2.4059 117 2600 100.00 0.2797 0.2124 2.5022 124 2648 100.00 0.2745 0.2035 2.6161 144 2555 100.00 0.2546 0.1991 2.7540 149 2585 100.00 0.2460 0.1970 2.9265 136 2605 100.00 0.2515 0.1840 3.1524 132 2607 100.00 0.2153 0.1774 3.4696 145 2618 100.00 0.2030 0.1607 3.9714 157 2618 100.00 0.1969 0.1521 5.0027 140 2660 100.00 0.1847 0.1621 47.4659 156 2740 100.00 42.370 2.186 50.000 3LWM 32557 0 -3 0.105 1 18.96 10.61 98.9 0.864 2.20 2.33 2.53 4863 1 8.08 93.4 model building PHENIX (phenix.refine: 1.6_289) refinement PHENIX (phenix.refine: 1.6_289) data reduction XDS data scaling XDS phasing PHENIX 1.6_289 Structure of the large fragment of thermus aquaticus DNA polymerase I in complex with a blunt-ended DNA and ddATP 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N 6 N N 6 N N 7 N N 8 N N 8 N N 8 N N 8 N N 6 N N 6 N N 6 N N 5 N N 9 N N 9 N N 9 N N A GLU 337 A GLU 45 HELX_P A LEU 342 A LEU 50 1 1 6 A ARG 343 A ARG 51 HELX_P A LEU 345 A LEU 53 5 2 3 A LEU 352 A LEU 60 HELX_P A GLU 363 A GLU 71 1 3 12 A ASP 372 A ASP 80 HELX_P A ASP 381 A ASP 89 1 4 10 A THR 386 A THR 94 HELX_P A GLY 395 A GLY 103 1 5 10 A GLU 401 A GLU 109 HELX_P A LEU 420 A LEU 128 1 6 20 A GLU 423 A GLU 131 HELX_P A VAL 433 A VAL 141 1 7 11 A VAL 433 A VAL 141 HELX_P A GLY 448 A GLY 156 1 8 16 A ASP 452 A ASP 160 HELX_P A GLY 479 A GLY 187 1 9 28 A SER 486 A SER 194 HELX_P A ASP 496 A ASP 204 1 10 11 A SER 515 A SER 223 HELX_P A LEU 522 A LEU 230 1 11 8 A HIS 526 A HIS 234 HELX_P A TYR 545 A TYR 253 1 12 20 A PRO 548 A PRO 256 HELX_P A ILE 553 A ILE 261 5 13 6 A THR 588 A THR 296 HELX_P A ARG 596 A ARG 304 1 14 9 A GLN 613 A GLN 321 HELX_P A GLY 624 A GLY 332 1 15 12 A ASP 625 A ASP 333 HELX_P A GLU 634 A GLU 342 1 16 10 A ASP 637 A ASP 345 HELX_P A MET 646 A MET 354 1 17 10 A ASP 655 A ASP 363 HELX_P A GLY 672 A GLY 380 1 18 18 A SER 674 A SER 382 HELX_P A ALA 683 A ALA 391 1 19 10 A PRO 685 A PRO 393 HELX_P A PHE 700 A PHE 408 1 20 16 A PHE 700 A PHE 408 HELX_P A GLY 718 A GLY 426 1 21 19 A PRO 731 A PRO 439 HELX_P A ALA 735 A ALA 443 5 22 5 A VAL 737 A VAL 445 HELX_P A MET 775 A MET 483 1 23 39 A ARG 795 A ARG 503 HELX_P A GLY 809 A GLY 517 1 24 15 A ASP 826 A ASP 534 HELX_P A LYS 831 A LYS 539 1 25 6 covale 1.605 both B DC 111 B O3' DC 11 1_555 B 2DA 112 B P 2DA 12 1_555 metalc 2.107 A DDS 1 D O2A DDS 1_555 A MG 835 J MG MG 1_555 metalc 2.319 A DDS 1 D O3G DDS 1_555 A MG 835 J MG MG 1_555 metalc 2.392 A DDS 1 D O1B DDS 1_555 A MG 835 J MG MG 1_555 metalc 2.288 A HOH 46 S O HOH 1_555 A MG 835 J MG MG 1_555 metalc 2.113 A HOH 166 S O HOH 1_555 A MG 835 J MG MG 1_555 hydrog WATSON-CRICK B DG 101 B N1 DG 1 1_555 C DC 216 C N3 DC 12 1_555 hydrog WATSON-CRICK B DG 101 B N2 DG 1 1_555 C DC 216 C O2 DC 12 1_555 hydrog WATSON-CRICK B DG 101 B O6 DG 1 1_555 C DC 216 C N4 DC 12 1_555 hydrog WATSON-CRICK B DA 102 B N1 DA 2 1_555 C DT 215 C N3 DT 11 1_555 hydrog WATSON-CRICK B DA 102 B N6 DA 2 1_555 C DT 215 C O4 DT 11 1_555 hydrog WATSON-CRICK B DC 103 B N3 DC 3 1_555 C DG 214 C N1 DG 10 1_555 hydrog WATSON-CRICK B DC 103 B N4 DC 3 1_555 C DG 214 C O6 DG 10 1_555 hydrog WATSON-CRICK B DC 103 B O2 DC 3 1_555 C DG 214 C N2 DG 10 1_555 hydrog WATSON-CRICK B DC 104 B N3 DC 4 1_555 C DG 213 C N1 DG 9 1_555 hydrog WATSON-CRICK B DC 104 B N4 DC 4 1_555 C DG 213 C O6 DG 9 1_555 hydrog WATSON-CRICK B DC 104 B O2 DC 4 1_555 C DG 213 C N2 DG 9 1_555 hydrog WATSON-CRICK B DA 105 B N1 DA 5 1_555 C DT 212 C N3 DT 8 1_555 hydrog WATSON-CRICK B DA 105 B N6 DA 5 1_555 C DT 212 C O4 DT 8 1_555 hydrog WATSON-CRICK B DC 106 B N3 DC 6 1_555 C DG 211 C N1 DG 7 1_555 hydrog WATSON-CRICK B DC 106 B N4 DC 6 1_555 C DG 211 C O6 DG 7 1_555 hydrog WATSON-CRICK B DC 106 B O2 DC 6 1_555 C DG 211 C N2 DG 7 1_555 hydrog WATSON-CRICK B DG 107 B N1 DG 7 1_555 C DC 210 C N3 DC 6 1_555 hydrog WATSON-CRICK B DG 107 B N2 DG 7 1_555 C DC 210 C O2 DC 6 1_555 hydrog WATSON-CRICK B DG 107 B O6 DG 7 1_555 C DC 210 C N4 DC 6 1_555 hydrog WATSON-CRICK B DG 108 B N1 DG 8 1_555 C DC 209 C N3 DC 5 1_555 hydrog WATSON-CRICK B DG 108 B N2 DG 8 1_555 C DC 209 C O2 DC 5 1_555 hydrog WATSON-CRICK B DG 108 B O6 DG 8 1_555 C DC 209 C N4 DC 5 1_555 hydrog WATSON-CRICK B DC 109 B N3 DC 9 1_555 C DG 208 C N1 DG 4 1_555 hydrog WATSON-CRICK B DC 109 B N4 DC 9 1_555 C DG 208 C O6 DG 4 1_555 hydrog WATSON-CRICK B DC 109 B O2 DC 9 1_555 C DG 208 C N2 DG 4 1_555 hydrog WATSON-CRICK B DG 110 B N1 DG 10 1_555 C DC 207 C N3 DC 3 1_555 hydrog WATSON-CRICK B DG 110 B N2 DG 10 1_555 C DC 207 C O2 DC 3 1_555 hydrog WATSON-CRICK B DG 110 B O6 DG 10 1_555 C DC 207 C N4 DC 3 1_555 hydrog WATSON-CRICK B DC 111 B N3 DC 11 1_555 C DG 206 C N1 DG 2 1_555 hydrog WATSON-CRICK B DC 111 B N4 DC 11 1_555 C DG 206 C O6 DG 2 1_555 hydrog WATSON-CRICK B DC 111 B O2 DC 11 1_555 C DG 206 C N2 DG 2 1_555 hydrog WATSON-CRICK B 2DA 112 B N1 2DA 12 1_555 C DT 205 C N3 DT 1 1_555 hydrog WATSON-CRICK B 2DA 112 B N6 2DA 12 1_555 C DT 205 C O4 DT 1 1_555 TRANSFERASE/DNA DNA replication, DNA polymerases, DNA-binding, DNA-directed DNA polymerase, amino acid-templating mechanism, Nucleotidyltransferase, Transferase, TRANSFERASE-DNA complex, blunt-ended DNA, template-independent DNA synthesis, terminal deoxynucleotidyl transferase, template-independent nucleotide addition A TRP 299 A TRP 7 1 A PRO 300 A PRO 8 3.16 A ASP 578 A ASP 286 1 A PRO 579 A PRO 287 1.63 A VAL 649 A VAL 357 1 A PRO 650 A PRO 358 -13.82 A GLU 652 A GLU 360 1 A ALA 653 A ALA 361 0.87 DPO1_THEAQ UNP 1 293 P19821 ALEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDD PMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLD VAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKI LQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYS QIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAF IERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRL EEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE 3LWM PDB 2 3LWM 3LWM PDB 3 3LWM 293 832 3LWM 293 832 P19821 A 1 1 540 101 112 3LWM 101 112 3LWM B 2 1 12 205 216 3LWM 205 216 3LWM C 3 1 12 3 2 2 4 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A PHE 306 A PHE 14 A LEU 311 A LEU 19 A LEU 321 A LEU 29 A ARG 328 A ARG 36 A ARG 331 A ARG 39 A ARG 334 A ARG 42 A ARG 450 A ARG 158 A LEU 451 A LEU 159 A PHE 598 A PHE 306 A ILE 599 A ILE 307 A ARG 563 A ARG 271 A ASN 565 A ASN 273 A SER 575 A SER 283 A SER 577 A SER 285 A ARG 778 A ARG 486 A GLN 782 A GLN 490 A GLU 786 A GLU 494 A PRO 792 A PRO 500 A TRP 604 A TRP 312 A TYR 611 A TYR 319 A VAL 819 A VAL 527 A GLY 824 A GLY 532 A TYR 719 A TYR 427 A GLU 721 A GLU 429 A ARG 727 A ARG 435 A TYR 729 A TYR 437 BINDING SITE FOR RESIDUE DDS A 1 A DDS 1 Software 13 BINDING SITE FOR RESIDUE ACT A 833 A ACT 833 Software 2 BINDING SITE FOR RESIDUE ACT A 2 A ACT 2 Software 2 BINDING SITE FOR RESIDUE GOL A 834 A GOL 834 Software 3 BINDING SITE FOR RESIDUE GOL A 4 A GOL 4 Software 9 BINDING SITE FOR RESIDUE MG A 835 A MG 835 Software 4 BINDING SITE FOR RESIDUE NA A 836 A NA 836 Software 4 BINDING SITE FOR RESIDUE NA A 837 A NA 837 Software 3 BINDING SITE FOR RESIDUE NA A 5 A NA 5 Software 1 BINDING SITE FOR RESIDUE NA A 6 A NA 6 Software 3 BINDING SITE FOR RESIDUE GOL B 2 B GOL 2 Software 6 BINDING SITE FOR RESIDUE GOL B 3 B GOL 3 Software 4 BINDING SITE FOR RESIDUE GOL B 1 B GOL 1 Software 6 BINDING SITE FOR RESIDUE ACT C 4 C ACT 4 Software 2 A HOH 46 S HOH 13 1_555 A HOH 166 S HOH 13 1_555 A ARG 587 A ARG 295 13 1_555 A GLN 613 A GLN 321 13 1_555 A HIS 639 A HIS 347 13 1_555 A ARG 659 A ARG 367 13 1_555 A LYS 663 A LYS 371 13 1_555 A PHE 667 A PHE 375 13 1_555 A TYR 671 A TYR 379 13 1_555 A MG 835 J MG 13 1_555 A HOH 844 S HOH 13 1_555 B GOL 1 Q GOL 13 1_555 B 2DA 112 B 2DA 12 13 1_555 A ARG 313 A ARG 21 2 1_555 A ASP 551 A ASP 259 2 1_555 A THR 447 A THR 155 2 1_555 A ARG 778 A ARG 486 2 1_555 A LEU 311 A LEU 19 3 1_555 A GLU 400 A GLU 108 3 1_555 A ARG 405 A ARG 113 3 1_555 A HOH 141 S HOH 9 1_555 A HOH 160 S HOH 9 1_555 A THR 544 A THR 252 9 1_555 A TYR 545 A TYR 253 9 1_555 A PRO 579 A PRO 287 9 1_555 A ASN 580 A ASN 288 9 1_555 A ASN 583 A ASN 291 9 1_555 C DC 209 C DC 5 9 1_555 C DC 210 C DC 6 9 1_555 A DDS 1 D DDS 4 1_555 A HOH 46 S HOH 4 1_555 A HOH 166 S HOH 4 1_555 A ASP 610 A ASP 318 4 1_555 A GLU 615 A GLU 323 4 1_555 A TYR 671 A TYR 379 4 1_555 A ASN 750 A ASN 458 4 1_555 A GLN 754 A GLN 462 4 1_555 A GLY 510 A GLY 218 3 6_555 A ARG 741 A ARG 449 3 1_555 A GLU 745 A GLU 453 3 1_555 A GLU 774 A GLU 482 1 1_555 A HOH 112 S HOH 3 1_555 A LYS 354 A LYS 62 3 1_555 A ASP 355 A ASP 63 3 1_555 A HOH 149 S HOH 6 1_555 A ARG 536 A ARG 244 6 1_555 A LYS 540 A LYS 248 6 1_555 B DG 107 B DG 7 6 1_555 B DG 108 B DG 8 6 1_555 B DC 109 B DC 9 6 1_555 B DG 107 B DG 7 4 1_555 B DG 108 B DG 8 4 1_555 C HOH 9 U HOH 4 1_555 C DC 209 C DC 5 4 1_555 A DDS 1 D DDS 6 1_555 A ASP 610 A ASP 318 6 1_555 A GLU 786 A GLU 494 6 1_555 A HOH 843 S HOH 6 1_555 A HOH 844 S HOH 6 1_555 B 2DA 112 B 2DA 12 6 1_555 C DG 206 C DG 2 2 1_555 C DC 207 C DC 3 2 1_555 152 P 31 2 1