0.005352
0.000000
0.000000
0.000000
0.015546
0.000000
0.000000
0.000000
0.011996
0.00000
0.00000
0.00000
Zhou, J.
Liang, B.
Lv, C.
Yang, W.
Li, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
186.838
64.326
83.362
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C9 H13 N2 O8 P
308.182
y
2'-DEOXYURIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Biochemistry
BICHAW
0033
0006-2960
49
6276
6281
10.1021/bi1006699
20575532
Functional and Structural Impact of Target Uridine Substitutions on the H/ACA Ribonucleoprotein Particle Pseudouridine Synthase .
2010
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
22-ID
APS
1.5418
SYNCHROTRON
APS BEAMLINE 22-ID
38625.027
Pseudouridine synthase Cbf5
5.4.99.-
1
man
polymer
7242.618
Ribosome biogenesis protein Nop10
1
man
polymer
13414.664
50S ribosomal protein L7Ae
1
man
polymer
18687.193
H/ACA RNA
1
syn
polymer
4174.511
5'-R(*GP*AP*GP*CP*GP*(du)P*GP*CP*GP*GP*UP*UP*U)-3'
1
syn
polymer
65.409
ZINC ION
1
syn
non-polymer
18.015
water
9
nat
water
tRNA pseudouridine 55 synthase, Psi55 synthase, tRNA-uridine isomerase, tRNA pseudouridylate synthase
no
no
MARDEVRRILPADIKREVLIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGT
LDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRLRTRKVYYIEV
LEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAI
QPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDV
EKVFMPRDWYPKLWEKRDRS
MARDEVRRILPADIKREVLIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGT
LDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRLRTRKVYYIEV
LEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAI
QPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDV
EKVFMPRDWYPKLWEKRDRS
A
polypeptide(L)
no
no
MRFRIRKCPKCGRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREVLGIGRKEK
MRFRIRKCPKCGRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREVLGIGRKEK
B
polypeptide(L)
no
no
MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYV
PSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK
MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYV
PSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK
C
polypeptide(L)
no
no
GGGCCACGGAAACCGCGCGCGGUGAUCAAUGAGCCGCGUUCGCUCCCGUGGCCCACAA
GGGCCACGGAAACCGCGCGCGGUGAUCAAUGAGCCGCGUUCGCUCCCGUGGCCCACAA
D
polyribonucleotide
no
no
GAGCG(DU)GCGGUUU
GAGCGUGCGGUUU
E
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
2261
Pyrococcus furiosus
562
Escherichia coli
sample
2261
Pyrococcus furiosus
562
Escherichia coli
sample
2261
Pyrococcus furiosus
562
Escherichia coli
1
3.06
59.81
VAPOR DIFFUSION, HANGING DROP
VAPOR DIFFUSION, HANGING DROP
VAPOR DIFFUSION, HANGING DROP
VAPOR DIFFUSION, HANGING DROP
VAPOR DIFFUSION, HANGING DROP
VAPOR DIFFUSION, HANGING DROP
VAPOR DIFFUSION, HANGING DROP
VAPOR DIFFUSION, HANGING DROP
VAPOR DIFFUSION, HANGING DROP
VAPOR DIFFUSION, HANGING DROP
-6.189
1
19
D
1
D
54
-3.369
D_G1:C54_D
1
-16.014
-0.594
-0.161
-0.031
0.011
1
19
D
2
D
53
1.174
D_G2:C53_D
2
-11.796
-0.237
0.039
-0.027
0.989
1
19
D
3
D
52
-1.200
D_G3:C52_D
3
-15.286
-0.121
0.063
-0.123
4.321
1
19
D
4
D
51
-1.276
D_C4:G51_D
4
-17.794
0.285
0.026
-0.044
2.434
1
19
D
5
D
50
1.097
D_C5:G50_D
5
-10.460
-0.125
0.164
0.137
0.857
1
20
D
6
D
49
1.260
D_A6:U49_D
6
-16.256
0.056
-0.192
-0.008
10.788
1
19
D
7
D
48
0.305
D_C7:G48_D
7
-19.969
0.455
-0.280
-0.079
-3.692
1
19
D
8
D
47
4.025
D_G8:C47_D
8
-12.142
-0.260
0.106
-0.193
4.324
1
19
D
9
D
46
-3.241
D_G9:C46_D
9
-10.969
0.559
0.503
-0.114
10.664
1
E
5
D
45
-8.469
E_G5:C45_D
10
-4.794
0.167
0.705
0.288
-6.565
1
20
E
6
D
44
3.167
E_A6:U44_D
11
-3.376
0.002
0.260
0.256
-15.874
1
19
E
7
D
43
-2.592
E_G7:C43_D
12
-6.945
-0.006
-0.331
0.089
-10.403
1
19
E
8
D
42
-0.742
E_C8:G42_D
13
1.306
0.062
0.278
0.074
-1.494
6
E
9
D
41
-10.757
E_G9:C41_D
14
0.525
7.547
0.660
-4.865
14.807
1
20
D
11
E
16
1.761
D_A11:U16_E
15
-1.488
0.832
-0.253
0.242
-0.599
D
12
E
15
-13.089
D_A12:U15_E
16
-9.036
1.276
0.033
0.464
11.114
1
19
D
13
E
14
5.654
D_C13:G14_E
17
-23.842
-0.311
-0.774
-0.128
9.152
1
19
D
14
E
13
0.208
D_C14:G13_E
18
-1.106
0.257
0.768
-0.188
2.621
D
15
E
12
-1.213
D_G15:C12_E
19
1.576
-2.221
-0.732
-0.155
3.345
1
28
D
17
D
39
10.809
D_G17:U39_D
20
-15.450
-1.503
0.194
-0.334
13.509
1
19
D
18
D
38
0.138
D_C18:G38_D
21
-25.652
-0.172
-0.134
-0.315
-6.508
1
19
D
19
D
37
-2.527
D_G19:C37_D
22
-15.965
0.124
-0.140
-0.249
8.452
1
19
D
20
D
36
2.330
D_C20:G36_D
23
-12.482
-0.213
-0.082
-0.036
0.089
1
19
D
21
D
35
-1.592
D_G21:C35_D
24
-17.262
-0.355
0.231
-0.286
-12.960
1
19
D
22
D
34
0.281
D_G22:C34_D
25
-13.644
-0.042
-0.439
-0.008
5.176
1
28
D
23
D
33
5.004
D_U23:G33_D
26
-5.617
2.518
0.097
-0.444
25.282
9
11
D
24
D
32
7.813
D_G24:A32_D
27
8.976
6.730
0.661
-4.281
-22.922
10
11
D
25
D
31
5.911
D_A25:G31_D
28
18.954
-6.791
0.369
-4.604
2.796
36.617
D
D
1
2
9.875
D
D
54
53
3.091
6.175
-0.027
-1.551
DD_G1G2:C53C54_DD
1
-1.367
2.186
36.085
-3.237
-0.128
2.620
32.060
D
D
2
3
15.676
D
D
53
52
3.135
8.552
-0.500
-1.660
DD_G2G3:C52C53_DD
2
-2.143
3.928
30.855
-4.387
0.559
3.123
35.183
D
D
3
4
4.566
D
D
52
51
3.235
2.757
0.099
-1.333
DD_G3C4:G51C52_DD
3
-0.337
0.558
35.077
-2.605
-0.212
2.668
32.805
D
D
4
5
13.375
D
D
51
50
3.160
7.490
0.299
-1.808
DD_C4C5:G50G51_DD
4
-1.050
1.875
31.945
-4.364
-0.691
2.498
31.155
D
D
5
6
20.011
D
D
50
49
3.218
10.538
-0.470
-1.513
DD_C5A6:U49G50_DD
5
2.054
-3.901
29.290
-4.631
1.229
2.770
35.413
D
D
6
7
10.300
D
D
49
48
3.004
6.226
0.224
-1.164
DD_A6C7:G48U49_DD
6
3.236
-5.352
34.733
-2.730
0.056
1.746
34.137
D
D
7
8
37.259
D
D
48
47
3.464
20.467
0.373
-1.772
DD_C7G8:C47G48_DD
7
-1.100
2.002
27.446
-5.905
-0.790
2.744
36.881
D
D
8
9
9.065
D
D
47
46
3.004
5.713
-0.010
-1.506
DD_G8G9:C46C47_DD
8
-1.183
1.877
36.433
-3.065
-0.125
2.990
42.619
D
E
9
5
2.620
D
D
46
45
2.931
1.901
-1.576
-1.648
DE_G9G5:C45C46_DD
9
-4.108
5.662
42.389
-2.442
1.793
2.648
38.142
E
E
5
6
17.601
D
D
45
44
3.394
11.319
0.379
-2.176
EE_G5A6:U44C45_DD
10
4.171
-6.486
36.252
-4.688
-0.079
2.623
30.350
E
E
6
7
18.271
D
D
44
43
3.496
9.366
0.129
-2.241
EE_A6G7:C43U44_DD
11
5.327
-10.391
28.415
-6.104
0.790
3.164
33.744
E
E
7
8
-2.907
D
D
43
42
3.105
-1.684
0.287
-2.070
EE_G7C8:G42C43_DD
12
-3.104
5.356
33.564
-3.304
-0.978
3.379
55.101
E
E
8
9
-3.292
D
D
42
41
3.208
-3.041
-1.485
-1.335
EE_C8G9:C41G42_DD
13
-4.735
5.126
54.835
-1.261
1.322
3.031
34.250
D
D
11
12
16.386
E
E
16
15
3.739
9.529
-0.917
-2.022
DD_A11A12:U15U16_EE
14
0.795
-1.368
32.926
-5.019
1.689
2.373
20.747
D
D
12
13
13.983
E
E
15
14
2.926
4.814
0.680
-2.029
DD_A12C13:G14U15_EE
15
9.175
-26.651
17.999
-7.446
1.566
2.649
43.810
D
D
13
14
11.864
E
E
14
13
3.441
8.595
0.102
-2.418
DD_C13C14:G13G14_EE
16
-16.550
22.843
39.821
-4.044
-1.683
3.801
28.717
D
D
14
15
-3.615
E
E
13
12
3.518
-1.765
1.128
-1.877
DD_C14G15:C12G13_EE
17
8.688
-17.797
27.342
-3.329
-0.031
5.564
94.340
D
D
15
17
15.716
E
D
12
39
5.990
22.905
2.646
-0.925
DD_G15G17:U39C12_DE
18
-6.327
4.341
91.992
-1.379
-2.011
2.881
35.588
D
D
17
18
6.945
D
D
39
38
3.016
4.235
-0.394
-0.875
DD_G17C18:G38U39_DD
19
1.216
-1.994
35.323
-1.989
0.805
3.170
37.287
D
D
18
19
19.157
D
D
38
37
3.778
12.036
-0.601
-1.427
DD_C18G19:C37G38_DD
20
-2.188
3.483
35.290
-3.975
0.623
2.879
29.251
D
D
19
20
1.904
D
D
37
36
2.919
0.961
0.191
-1.319
DD_G19C20:G36C37_DD
21
0.717
-1.420
29.227
-2.796
-0.241
2.337
37.007
D
D
20
21
26.822
D
D
36
35
3.290
16.454
-0.040
-1.448
DD_C20G21:C35G36_DD
22
-2.369
3.861
33.180
-4.297
-0.227
2.437
34.028
D
D
21
22
28.319
D
D
35
34
3.720
15.905
0.447
-1.957
DD_G21G22:C34C35_DD
23
4.648
-8.275
29.825
-5.902
-0.016
2.440
39.541
D
D
22
23
17.315
D
D
34
33
2.830
11.555
0.366
-0.963
DD_G22U23:G33C34_DD
24
-0.481
0.721
37.877
-2.543
-0.587
3.002
50.319
D
D
23
24
15.289
D
D
33
32
2.972
12.846
1.198
0.010
DD_U23G24:A32G33_DD
25
5.943
-7.073
48.412
-0.846
-1.012
2.298
-15.010
D
D
24
25
35.559
D
D
32
31
4.550
-8.682
0.292
-2.308
DD_G24A25:G31A32_DD
26
2.028
8.305
-12.088
17.200
3.071
repository
Initial release
Version format compliance
1
0
2010-07-14
1
1
2011-07-13
RCSB
Y
RCSB
2010-02-24
REL
REL
ZN
ZINC ION
HOH
water
In vitro transcription
sample
commercial source
sample
ZN
1
6
ZN
ZN
61
B
HOH
2
7
HOH
HOH
2
A
HOH
3
7
HOH
HOH
3
A
HOH
5
7
HOH
HOH
344
A
HOH
7
7
HOH
HOH
345
A
HOH
9
7
HOH
HOH
346
A
HOH
6
7
HOH
HOH
62
B
HOH
1
7
HOH
HOH
59
D
HOH
4
7
HOH
HOH
60
D
HOH
8
7
HOH
HOH
61
D
n
1
4
A
n
2
5
A
n
3
6
A
n
4
7
A
n
5
8
A
n
6
9
A
n
7
10
A
ARG
11
n
8
ARG
11
A
ILE
12
n
9
ILE
12
A
LEU
13
n
10
LEU
13
A
PRO
14
n
11
PRO
14
A
ALA
15
n
12
ALA
15
A
ASP
16
n
13
ASP
16
A
ILE
17
n
14
ILE
17
A
LYS
18
n
15
LYS
18
A
ARG
19
n
16
ARG
19
A
GLU
20
n
17
GLU
20
A
VAL
21
n
18
VAL
21
A
LEU
22
n
19
LEU
22
A
ILE
23
n
20
ILE
23
A
LYS
24
n
21
LYS
24
A
ASP
25
n
22
ASP
25
A
GLU
26
n
23
GLU
26
A
ASN
27
n
24
ASN
27
A
ALA
28
n
25
ALA
28
A
GLU
29
n
26
GLU
29
A
THR
30
n
27
THR
30
A
ASN
31
n
28
ASN
31
A
PRO
32
n
29
PRO
32
A
ASP
33
n
30
ASP
33
A
TRP
34
n
31
TRP
34
A
GLY
35
n
32
GLY
35
A
PHE
36
n
33
PHE
36
A
PRO
37
n
34
PRO
37
A
PRO
38
n
35
PRO
38
A
GLU
39
n
36
GLU
39
A
LYS
40
n
37
LYS
40
A
ARG
41
n
38
ARG
41
A
PRO
42
n
39
PRO
42
A
ILE
43
n
40
ILE
43
A
GLU
44
n
41
GLU
44
A
MET
45
n
42
MET
45
A
HIS
46
n
43
HIS
46
A
ILE
47
n
44
ILE
47
A
GLN
48
n
45
GLN
48
A
PHE
49
n
46
PHE
49
A
GLY
50
n
47
GLY
50
A
VAL
51
n
48
VAL
51
A
ILE
52
n
49
ILE
52
A
ASN
53
n
50
ASN
53
A
LEU
54
n
51
LEU
54
A
ASP
55
n
52
ASP
55
A
LYS
56
n
53
LYS
56
A
PRO
57
n
54
PRO
57
A
PRO
58
n
55
PRO
58
A
GLY
59
n
56
GLY
59
A
PRO
60
n
57
PRO
60
A
THR
61
n
58
THR
61
A
SER
62
n
59
SER
62
A
HIS
63
n
60
HIS
63
A
GLU
64
n
61
GLU
64
A
VAL
65
n
62
VAL
65
A
VAL
66
n
63
VAL
66
A
ALA
67
n
64
ALA
67
A
TRP
68
n
65
TRP
68
A
ILE
69
n
66
ILE
69
A
LYS
70
n
67
LYS
70
A
LYS
71
n
68
LYS
71
A
ILE
72
n
69
ILE
72
A
LEU
73
n
70
LEU
73
A
ASN
74
n
71
ASN
74
A
LEU
75
n
72
LEU
75
A
GLU
76
n
73
GLU
76
A
LYS
77
n
74
LYS
77
A
ALA
78
n
75
ALA
78
A
GLY
79
n
76
GLY
79
A
HIS
80
n
77
HIS
80
A
GLY
81
n
78
GLY
81
A
GLY
82
n
79
GLY
82
A
THR
83
n
80
THR
83
A
LEU
84
n
81
LEU
84
A
ASP
85
n
82
ASP
85
A
PRO
86
n
83
PRO
86
A
LYS
87
n
84
LYS
87
A
VAL
88
n
85
VAL
88
A
SER
89
n
86
SER
89
A
GLY
90
n
87
GLY
90
A
VAL
91
n
88
VAL
91
A
LEU
92
n
89
LEU
92
A
PRO
93
n
90
PRO
93
A
VAL
94
n
91
VAL
94
A
ALA
95
n
92
ALA
95
A
LEU
96
n
93
LEU
96
A
GLU
97
n
94
GLU
97
A
LYS
98
n
95
LYS
98
A
ALA
99
n
96
ALA
99
A
THR
100
n
97
THR
100
A
ARG
101
n
98
ARG
101
A
VAL
102
n
99
VAL
102
A
VAL
103
n
100
VAL
103
A
GLN
104
n
101
GLN
104
A
ALA
105
n
102
ALA
105
A
LEU
106
n
103
LEU
106
A
LEU
107
n
104
LEU
107
A
PRO
108
n
105
PRO
108
A
ALA
109
n
106
ALA
109
A
GLY
110
n
107
GLY
110
A
LYS
111
n
108
LYS
111
A
GLU
112
n
109
GLU
112
A
TYR
113
n
110
TYR
113
A
VAL
114
n
111
VAL
114
A
ALA
115
n
112
ALA
115
A
LEU
116
n
113
LEU
116
A
MET
117
n
114
MET
117
A
HIS
118
n
115
HIS
118
A
LEU
119
n
116
LEU
119
A
HIS
120
n
117
HIS
120
A
GLY
121
n
118
GLY
121
A
ASP
122
n
119
ASP
122
A
VAL
123
n
120
VAL
123
A
PRO
124
n
121
PRO
124
A
GLU
125
n
122
GLU
125
A
ASP
126
n
123
ASP
126
A
LYS
127
n
124
LYS
127
A
ILE
128
n
125
ILE
128
A
ILE
129
n
126
ILE
129
A
GLN
130
n
127
GLN
130
A
VAL
131
n
128
VAL
131
A
MET
132
n
129
MET
132
A
LYS
133
n
130
LYS
133
A
GLU
134
n
131
GLU
134
A
PHE
135
n
132
PHE
135
A
GLU
136
n
133
GLU
136
A
GLY
137
n
134
GLY
137
A
GLU
138
n
135
GLU
138
A
ILE
139
n
136
ILE
139
A
ILE
140
n
137
ILE
140
A
GLN
141
n
138
GLN
141
A
ARG
142
n
139
ARG
142
A
n
140
143
A
n
141
144
A
n
142
145
A
n
143
146
A
n
144
147
A
n
145
148
A
n
146
149
A
n
147
150
A
n
148
151
A
n
149
152
A
LEU
153
n
150
LEU
153
A
ARG
154
n
151
ARG
154
A
THR
155
n
152
THR
155
A
ARG
156
n
153
ARG
156
A
LYS
157
n
154
LYS
157
A
VAL
158
n
155
VAL
158
A
TYR
159
n
156
TYR
159
A
TYR
160
n
157
TYR
160
A
ILE
161
n
158
ILE
161
A
GLU
162
n
159
GLU
162
A
VAL
163
n
160
VAL
163
A
LEU
164
n
161
LEU
164
A
GLU
165
n
162
GLU
165
A
ILE
166
n
163
ILE
166
A
GLU
167
n
164
GLU
167
A
GLY
168
n
165
GLY
168
A
ARG
169
n
166
ARG
169
A
ASP
170
n
167
ASP
170
A
VAL
171
n
168
VAL
171
A
LEU
172
n
169
LEU
172
A
PHE
173
n
170
PHE
173
A
ARG
174
n
171
ARG
174
A
VAL
175
n
172
VAL
175
A
GLY
176
n
173
GLY
176
A
VAL
177
n
174
VAL
177
A
GLU
178
n
175
GLU
178
A
ALA
179
n
176
ALA
179
A
GLY
180
n
177
GLY
180
A
THR
181
n
178
THR
181
A
TYR
182
n
179
TYR
182
A
ILE
183
n
180
ILE
183
A
ARG
184
n
181
ARG
184
A
SER
185
n
182
SER
185
A
LEU
186
n
183
LEU
186
A
ILE
187
n
184
ILE
187
A
HIS
188
n
185
HIS
188
A
HIS
189
n
186
HIS
189
A
ILE
190
n
187
ILE
190
A
GLY
191
n
188
GLY
191
A
LEU
192
n
189
LEU
192
A
ALA
193
n
190
ALA
193
A
LEU
194
n
191
LEU
194
A
GLY
195
n
192
GLY
195
A
VAL
196
n
193
VAL
196
A
GLY
197
n
194
GLY
197
A
ALA
198
n
195
ALA
198
A
HIS
199
n
196
HIS
199
A
MET
200
n
197
MET
200
A
SER
201
n
198
SER
201
A
GLU
202
n
199
GLU
202
A
LEU
203
n
200
LEU
203
A
ARG
204
n
201
ARG
204
A
ARG
205
n
202
ARG
205
A
THR
206
n
203
THR
206
A
ARG
207
n
204
ARG
207
A
SER
208
n
205
SER
208
A
GLY
209
n
206
GLY
209
A
PRO
210
n
207
PRO
210
A
PHE
211
n
208
PHE
211
A
LYS
212
n
209
LYS
212
A
GLU
213
n
210
GLU
213
A
ASP
214
n
211
ASP
214
A
GLU
215
n
212
GLU
215
A
THR
216
n
213
THR
216
A
LEU
217
n
214
LEU
217
A
ILE
218
n
215
ILE
218
A
THR
219
n
216
THR
219
A
LEU
220
n
217
LEU
220
A
HIS
221
n
218
HIS
221
A
ASP
222
n
219
ASP
222
A
LEU
223
n
220
LEU
223
A
VAL
224
n
221
VAL
224
A
ASP
225
n
222
ASP
225
A
TYR
226
n
223
TYR
226
A
TYR
227
n
224
TYR
227
A
TYR
228
n
225
TYR
228
A
PHE
229
n
226
PHE
229
A
TRP
230
n
227
TRP
230
A
LYS
231
n
228
LYS
231
A
GLU
232
n
229
GLU
232
A
ASP
233
n
230
ASP
233
A
GLY
234
n
231
GLY
234
A
ILE
235
n
232
ILE
235
A
GLU
236
n
233
GLU
236
A
GLU
237
n
234
GLU
237
A
TYR
238
n
235
TYR
238
A
PHE
239
n
236
PHE
239
A
ARG
240
n
237
ARG
240
A
LYS
241
n
238
LYS
241
A
ALA
242
n
239
ALA
242
A
ILE
243
n
240
ILE
243
A
GLN
244
n
241
GLN
244
A
PRO
245
n
242
PRO
245
A
MET
246
n
243
MET
246
A
GLU
247
n
244
GLU
247
A
LYS
248
n
245
LYS
248
A
ALA
249
n
246
ALA
249
A
VAL
250
n
247
VAL
250
A
GLU
251
n
248
GLU
251
A
HIS
252
n
249
HIS
252
A
LEU
253
n
250
LEU
253
A
PRO
254
n
251
PRO
254
A
LYS
255
n
252
LYS
255
A
VAL
256
n
253
VAL
256
A
TRP
257
n
254
TRP
257
A
ILE
258
n
255
ILE
258
A
LYS
259
n
256
LYS
259
A
ASP
260
n
257
ASP
260
A
SER
261
n
258
SER
261
A
ALA
262
n
259
ALA
262
A
VAL
263
n
260
VAL
263
A
ALA
264
n
261
ALA
264
A
ALA
265
n
262
ALA
265
A
VAL
266
n
263
VAL
266
A
THR
267
n
264
THR
267
A
HIS
268
n
265
HIS
268
A
GLY
269
n
266
GLY
269
A
ALA
270
n
267
ALA
270
A
ASP
271
n
268
ASP
271
A
LEU
272
n
269
LEU
272
A
ALA
273
n
270
ALA
273
A
VAL
274
n
271
VAL
274
A
PRO
275
n
272
PRO
275
A
GLY
276
n
273
GLY
276
A
ILE
277
n
274
ILE
277
A
ALA
278
n
275
ALA
278
A
LYS
279
n
276
LYS
279
A
LEU
280
n
277
LEU
280
A
HIS
281
n
278
HIS
281
A
ALA
282
n
279
ALA
282
A
GLY
283
n
280
GLY
283
A
ILE
284
n
281
ILE
284
A
LYS
285
n
282
LYS
285
A
ARG
286
n
283
ARG
286
A
GLY
287
n
284
GLY
287
A
ASP
288
n
285
ASP
288
A
LEU
289
n
286
LEU
289
A
VAL
290
n
287
VAL
290
A
ALA
291
n
288
ALA
291
A
ILE
292
n
289
ILE
292
A
MET
293
n
290
MET
293
A
THR
294
n
291
THR
294
A
LEU
295
n
292
LEU
295
A
LYS
296
n
293
LYS
296
A
ASP
297
n
294
ASP
297
A
GLU
298
n
295
GLU
298
A
LEU
299
n
296
LEU
299
A
VAL
300
n
297
VAL
300
A
ALA
301
n
298
ALA
301
A
LEU
302
n
299
LEU
302
A
GLY
303
n
300
GLY
303
A
LYS
304
n
301
LYS
304
A
ALA
305
n
302
ALA
305
A
MET
306
n
303
MET
306
A
MET
307
n
304
MET
307
A
THR
308
n
305
THR
308
A
SER
309
n
306
SER
309
A
GLN
310
n
307
GLN
310
A
GLU
311
n
308
GLU
311
A
MET
312
n
309
MET
312
A
LEU
313
n
310
LEU
313
A
GLU
314
n
311
GLU
314
A
LYS
315
n
312
LYS
315
A
THR
316
n
313
THR
316
A
LYS
317
n
314
LYS
317
A
GLY
318
n
315
GLY
318
A
ILE
319
n
316
ILE
319
A
ALA
320
n
317
ALA
320
A
VAL
321
n
318
VAL
321
A
ASP
322
n
319
ASP
322
A
VAL
323
n
320
VAL
323
A
GLU
324
n
321
GLU
324
A
LYS
325
n
322
LYS
325
A
VAL
326
n
323
VAL
326
A
PHE
327
n
324
PHE
327
A
MET
328
n
325
MET
328
A
PRO
329
n
326
PRO
329
A
ARG
330
n
327
ARG
330
A
ASP
331
n
328
ASP
331
A
TRP
332
n
329
TRP
332
A
TYR
333
n
330
TYR
333
A
PRO
334
n
331
PRO
334
A
LYS
335
n
332
LYS
335
A
LEU
336
n
333
LEU
336
A
TRP
337
n
334
TRP
337
A
n
335
338
A
n
336
339
A
n
337
340
A
n
338
341
A
n
339
342
A
n
340
343
A
n
1
1
B
n
2
2
B
PHE
3
n
3
PHE
3
B
ARG
4
n
4
ARG
4
B
ILE
5
n
5
ILE
5
B
ARG
6
n
6
ARG
6
B
LYS
7
n
7
LYS
7
B
CYS
8
n
8
CYS
8
B
PRO
9
n
9
PRO
9
B
LYS
10
n
10
LYS
10
B
CYS
11
n
11
CYS
11
B
GLY
12
n
12
GLY
12
B
ARG
13
n
13
ARG
13
B
TYR
14
n
14
TYR
14
B
THR
15
n
15
THR
15
B
LEU
16
n
16
LEU
16
B
LYS
17
n
17
LYS
17
B
GLU
18
n
18
GLU
18
B
VAL
19
n
19
VAL
19
B
CYS
20
n
20
CYS
20
B
PRO
21
n
21
PRO
21
B
VAL
22
n
22
VAL
22
B
CYS
23
n
23
CYS
23
B
GLY
24
n
24
GLY
24
B
GLU
25
n
25
GLU
25
B
LYS
26
n
26
LYS
26
B
THR
27
n
27
THR
27
B
LYS
28
n
28
LYS
28
B
VAL
29
n
29
VAL
29
B
ALA
30
n
30
ALA
30
B
HIS
31
n
31
HIS
31
B
PRO
32
n
32
PRO
32
B
PRO
33
n
33
PRO
33
B
ARG
34
n
34
ARG
34
B
PHE
35
n
35
PHE
35
B
SER
36
n
36
SER
36
B
PRO
37
n
37
PRO
37
B
GLU
38
n
38
GLU
38
B
ASP
39
n
39
ASP
39
B
PRO
40
n
40
PRO
40
B
TYR
41
n
41
TYR
41
B
GLY
42
n
42
GLY
42
B
GLU
43
n
43
GLU
43
B
TYR
44
n
44
TYR
44
B
ARG
45
n
45
ARG
45
B
ARG
46
n
46
ARG
46
B
ARG
47
n
47
ARG
47
B
TRP
48
n
48
TRP
48
B
LYS
49
n
49
LYS
49
B
ARG
50
n
50
ARG
50
B
GLU
51
n
51
GLU
51
B
VAL
52
n
52
VAL
52
B
LEU
53
n
53
LEU
53
B
GLY
54
n
54
GLY
54
B
ILE
55
n
55
ILE
55
B
n
56
56
B
n
57
57
B
n
58
58
B
n
59
59
B
n
60
60
B
n
1
2
C
n
2
3
C
LYS
4
n
3
LYS
4
C
PRO
5
n
4
PRO
5
C
SER
6
n
5
SER
6
C
TYR
7
n
6
TYR
7
C
VAL
8
n
7
VAL
8
C
LYS
9
n
8
LYS
9
C
PHE
10
n
9
PHE
10
C
GLU
11
n
10
GLU
11
C
VAL
12
n
11
VAL
12
C
PRO
13
n
12
PRO
13
C
LYS
14
n
13
LYS
14
C
GLU
15
n
14
GLU
15
C
LEU
16
n
15
LEU
16
C
ALA
17
n
16
ALA
17
C
GLU
18
n
17
GLU
18
C
LYS
19
n
18
LYS
19
C
ALA
20
n
19
ALA
20
C
LEU
21
n
20
LEU
21
C
GLN
22
n
21
GLN
22
C
ALA
23
n
22
ALA
23
C
VAL
24
n
23
VAL
24
C
GLU
25
n
24
GLU
25
C
ILE
26
n
25
ILE
26
C
ALA
27
n
26
ALA
27
C
ARG
28
n
27
ARG
28
C
ASP
29
n
28
ASP
29
C
THR
30
n
29
THR
30
C
GLY
31
n
30
GLY
31
C
LYS
32
n
31
LYS
32
C
ILE
33
n
32
ILE
33
C
ARG
34
n
33
ARG
34
C
LYS
35
n
34
LYS
35
C
GLY
36
n
35
GLY
36
C
THR
37
n
36
THR
37
C
ASN
38
n
37
ASN
38
C
GLU
39
n
38
GLU
39
C
THR
40
n
39
THR
40
C
THR
41
n
40
THR
41
C
LYS
42
n
41
LYS
42
C
ALA
43
n
42
ALA
43
C
VAL
44
n
43
VAL
44
C
GLU
45
n
44
GLU
45
C
ARG
46
n
45
ARG
46
C
GLY
47
n
46
GLY
47
C
GLN
48
n
47
GLN
48
C
ALA
49
n
48
ALA
49
C
LYS
50
n
49
LYS
50
C
LEU
51
n
50
LEU
51
C
VAL
52
n
51
VAL
52
C
ILE
53
n
52
ILE
53
C
ILE
54
n
53
ILE
54
C
ALA
55
n
54
ALA
55
C
GLU
56
n
55
GLU
56
C
ASP
57
n
56
ASP
57
C
VAL
58
n
57
VAL
58
C
ASP
59
n
58
ASP
59
C
PRO
60
n
59
PRO
60
C
GLU
61
n
60
GLU
61
C
GLU
62
n
61
GLU
62
C
ILE
63
n
62
ILE
63
C
VAL
64
n
63
VAL
64
C
ALA
65
n
64
ALA
65
C
HIS
66
n
65
HIS
66
C
LEU
67
n
66
LEU
67
C
PRO
68
n
67
PRO
68
C
PRO
69
n
68
PRO
69
C
LEU
70
n
69
LEU
70
C
CYS
71
n
70
CYS
71
C
GLU
72
n
71
GLU
72
C
GLU
73
n
72
GLU
73
C
LYS
74
n
73
LYS
74
C
GLU
75
n
74
GLU
75
C
ILE
76
n
75
ILE
76
C
PRO
77
n
76
PRO
77
C
TYR
78
n
77
TYR
78
C
ILE
79
n
78
ILE
79
C
TYR
80
n
79
TYR
80
C
VAL
81
n
80
VAL
81
C
PRO
82
n
81
PRO
82
C
SER
83
n
82
SER
83
C
LYS
84
n
83
LYS
84
C
LYS
85
n
84
LYS
85
C
GLU
86
n
85
GLU
86
C
LEU
87
n
86
LEU
87
C
GLY
88
n
87
GLY
88
C
ALA
89
n
88
ALA
89
C
ALA
90
n
89
ALA
90
C
ALA
91
n
90
ALA
91
C
GLY
92
n
91
GLY
92
C
ILE
93
n
92
ILE
93
C
GLU
94
n
93
GLU
94
C
VAL
95
n
94
VAL
95
C
ALA
96
n
95
ALA
96
C
ALA
97
n
96
ALA
97
C
ALA
98
n
97
ALA
98
C
SER
99
n
98
SER
99
C
VAL
100
n
99
VAL
100
C
ALA
101
n
100
ALA
101
C
ILE
102
n
101
ILE
102
C
ILE
103
n
102
ILE
103
C
GLU
104
n
103
GLU
104
C
PRO
105
n
104
PRO
105
C
GLY
106
n
105
GLY
106
C
LYS
107
n
106
LYS
107
C
ALA
108
n
107
ALA
108
C
ARG
109
n
108
ARG
109
C
ASP
110
n
109
ASP
110
C
LEU
111
n
110
LEU
111
C
VAL
112
n
111
VAL
112
C
GLU
113
n
112
GLU
113
C
GLU
114
n
113
GLU
114
C
ILE
115
n
114
ILE
115
C
ALA
116
n
115
ALA
116
C
MET
117
n
116
MET
117
C
LYS
118
n
117
LYS
118
C
VAL
119
n
118
VAL
119
C
LYS
120
n
119
LYS
120
C
GLU
121
n
120
GLU
121
C
LEU
122
n
121
LEU
122
C
MET
123
n
122
MET
123
C
n
123
124
C
G
1
n
1
G
1
D
G
2
n
2
G
2
D
G
3
n
3
G
3
D
C
4
n
4
C
4
D
C
5
n
5
C
5
D
A
6
n
6
A
6
D
C
7
n
7
C
7
D
G
8
n
8
G
8
D
G
9
n
9
G
9
D
A
10
n
10
A
10
D
A
11
n
11
A
11
D
A
12
n
12
A
12
D
C
13
n
13
C
13
D
C
14
n
14
C
14
D
G
15
n
15
G
15
D
C
16
n
16
C
16
D
G
17
n
17
G
17
D
C
18
n
18
C
18
D
G
19
n
19
G
19
D
C
20
n
20
C
20
D
G
21
n
21
G
21
D
G
22
n
22
G
22
D
U
23
n
23
U
23
D
G
24
n
24
G
24
D
A
25
n
25
A
25
D
U
26
n
26
U
26
D
C
27
n
27
C
27
D
A
28
n
28
A
28
D
A
29
n
29
A
29
D
U
30
n
30
U
30
D
G
31
n
31
G
31
D
A
32
n
32
A
32
D
G
33
n
33
G
33
D
C
34
n
34
C
34
D
C
35
n
35
C
35
D
G
36
n
36
G
36
D
C
37
n
37
C
37
D
G
38
n
38
G
38
D
U
39
n
39
U
39
D
U
40
n
40
U
40
D
C
41
n
41
C
41
D
G
42
n
42
G
42
D
C
43
n
43
C
43
D
U
44
n
44
U
44
D
C
45
n
45
C
45
D
C
46
n
46
C
46
D
C
47
n
47
C
47
D
G
48
n
48
G
48
D
U
49
n
49
U
49
D
G
50
n
50
G
50
D
G
51
n
51
G
51
D
C
52
n
52
C
52
D
C
53
n
53
C
53
D
C
54
n
54
C
54
D
A
55
n
55
A
55
D
C
56
n
56
C
56
D
A
57
n
57
A
57
D
A
58
n
58
A
58
D
G
5
n
1
G
5
E
A
6
n
2
A
6
E
G
7
n
3
G
7
E
C
8
n
4
C
8
E
G
9
n
5
G
9
E
n
6
10
E
n
7
11
E
C
12
n
8
C
12
E
G
13
n
9
G
13
E
G
14
n
10
G
14
E
U
15
n
11
U
15
E
U
16
n
12
U
16
E
U
17
n
13
U
17
E
0.4699
0.0291
-0.0440
0.9340
-0.1837
0.4367
-0.0644
-0.2254
0.0226
-0.0536
0.1098
0.1325
0.0223
0.1010
-0.0400
0.4650
0.0671
0.0071
0.6341
-0.0001
0.6223
refined
37.9726
8.9146
20.9908
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
all
author_and_software_defined_assembly
PISA
5
pentameric
10460
-89
30230
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
22
A
N
LEU
19
A
O
LEU
280
A
O
LEU
277
A
O
ALA
278
A
O
ALA
275
A
N
TRP
257
A
N
TRP
254
A
N
VAL
256
A
N
VAL
253
A
O
MET
293
A
O
MET
290
A
N
ILE
292
A
N
ILE
289
A
O
VAL
300
A
O
VAL
297
A
N
LYS
304
A
N
LYS
301
A
O
ASP
322
A
O
ASP
319
A
O
ALA
320
A
O
ALA
317
A
N
LEU
272
A
N
LEU
269
A
N
GLY
79
A
N
GLY
76
A
O
ALA
95
A
O
ALA
92
A
N
SER
89
A
N
SER
86
A
O
ARG
205
A
O
ARG
202
A
N
SER
208
A
N
SER
205
A
O
PHE
211
A
O
PHE
208
A
N
ILE
139
A
N
ILE
136
A
O
ARG
156
A
O
ARG
153
A
N
GLU
165
A
N
GLU
162
A
O
LEU
172
A
O
LEU
169
A
O
VAL
171
A
O
VAL
168
A
N
MET
117
A
N
MET
114
A
N
HIS
118
A
N
HIS
115
A
O
HIS
199
A
O
HIS
196
A
O
ARG
205
A
O
ARG
202
A
N
SER
89
A
N
SER
86
A
O
LEU
92
A
O
LEU
89
A
N
LEU
54
A
N
LEU
51
A
N
VAL
51
A
N
VAL
48
A
O
GLN
244
A
O
GLN
241
B
O
THR
15
B
O
THR
15
B
N
ARG
6
B
N
ARG
6
B
N
LYS
7
B
N
LYS
7
B
O
LYS
28
B
O
LYS
28
C
N
ARG
34
C
N
ARG
33
C
O
ALA
101
C
O
ALA
100
C
O
VAL
100
C
O
VAL
99
C
N
ILE
53
C
N
ILE
52
C
N
ILE
54
C
N
ILE
53
C
O
ILE
79
C
O
ILE
78
1
A
MET
4
A
MET
1
1
Y
1
A
ALA
5
A
ALA
2
1
Y
1
A
ARG
6
A
ARG
3
1
Y
1
A
ASP
7
A
ASP
4
1
Y
1
A
GLU
8
A
GLU
5
1
Y
1
A
VAL
9
A
VAL
6
1
Y
1
A
ARG
10
A
ARG
7
1
Y
1
A
PRO
143
A
PRO
140
1
Y
1
A
PRO
144
A
PRO
141
1
Y
1
A
LEU
145
A
LEU
142
1
Y
1
A
ARG
146
A
ARG
143
1
Y
1
A
SER
147
A
SER
144
1
Y
1
A
ALA
148
A
ALA
145
1
Y
1
A
VAL
149
A
VAL
146
1
Y
1
A
LYS
150
A
LYS
147
1
Y
1
A
ARG
151
A
ARG
148
1
Y
1
A
ARG
152
A
ARG
149
1
Y
1
A
GLU
338
A
GLU
335
1
Y
1
A
LYS
339
A
LYS
336
1
Y
1
A
ARG
340
A
ARG
337
1
Y
1
A
ASP
341
A
ASP
338
1
Y
1
A
ARG
342
A
ARG
339
1
Y
1
A
SER
343
A
SER
340
1
Y
1
B
MET
1
B
MET
1
1
Y
1
B
ARG
2
B
ARG
2
1
Y
1
B
GLY
56
B
GLY
56
1
Y
1
B
ARG
57
B
ARG
57
1
Y
1
B
LYS
58
B
LYS
58
1
Y
1
B
GLU
59
B
GLU
59
1
Y
1
B
LYS
60
B
LYS
60
1
Y
1
C
MET
2
C
MET
1
1
Y
1
C
ALA
3
C
ALA
2
1
Y
1
C
LYS
124
C
LYS
123
1
Y
1
E
DU
10
E
DU
6
1
Y
1
E
G
11
E
G
7
1
Y
1
11.18
1.10
114.20
125.38
B
B
B
CA
CB
SG
CYS
CYS
CYS
8
8
8
N
1
9.20
1.10
114.20
123.40
B
B
B
CA
CB
SG
CYS
CYS
CYS
20
20
20
N
1
12.39
1.20
119.70
132.09
D
D
D
C3'
O3'
P
G
G
A
24
24
25
Y
1
-5.98
0.80
108.20
102.22
D
D
D
O4'
C1'
N1
U
U
U
26
26
26
N
1
7.48
0.70
108.50
115.98
D
D
D
O4'
C1'
N1
U
U
U
40
40
40
N
1
9.75
1.20
119.70
129.45
D
D
D
C3'
O3'
P
U
U
C
40
40
41
Y
1
4.25
0.70
108.50
112.75
D
D
D
O4'
C1'
N1
C
C
C
41
41
41
N
1
5.23
0.70
108.50
113.73
D
D
D
O4'
C1'
N1
C
C
C
56
56
56
N
1
3.02
0.40
120.30
123.32
D
D
D
C6
N1
C2
C
C
C
56
56
56
N
1
11.45
1.20
119.70
131.15
D
D
D
C3'
O3'
P
C
C
A
56
56
57
Y
1
A
ALA
78
-172.60
142.64
1
A
GLU
97
56.09
-122.48
1
A
ALA
249
-67.65
0.40
1
A
LYS
279
170.88
141.44
1
C
ALA
108
-84.56
36.72
12.1318
-0.0000
-0.0000
-9.2505
0.0000
-11.3260
0.2453
0.2017
0.2039
2.499
34.639
1725
34408
5.01
51.18
0.50
1
1.89
MOLECULAR REPLACEMENT
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
49.481
0.341
2.499
34.639
9
5361
1
1470
3881
0.008
5660
1.241
7989
22.580
2478
0.072
951
0.004
754
0.3652
0.3178
2.5726
102
2204
41.00
0.4053
0.3143
2.6556
128
2421
45.00
0.3712
0.3153
2.7505
134
2616
49.00
0.3878
0.3080
2.8605
148
2732
52.00
0.3791
0.2930
2.9906
143
2791
52.00
0.3298
0.2610
3.1482
134
2789
52.00
0.2922
0.2403
3.3453
156
2810
53.00
0.2782
0.2022
3.6034
150
2804
53.00
0.2312
0.1683
3.9655
165
2807
53.00
0.2001
0.1388
4.5383
152
2827
53.00
0.1707
0.1432
5.7136
156
2859
54.00
0.2085
0.1947
34.6425
157
3023
56.00
2.499
50.00
3LWV
34570
0.135
1
11.8
96.8
2.50
2.59
2852
0.645
5.7
81.1
data collection
HKL-2000
phasing
MOLREP
refinement
PHENIX
(phenix.refine)
data reduction
HKL-2000
data scaling
HKL-2000
Pseudouridine synthase Cbf5 (E.C.5.4.99.-), Ribosome biogenesis protein Nop10, 50S ribosomal protein L7Ae/RNA complex
Structure of H/ACA RNP bound to a substrate RNA containing 2'-deoxyuridine
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
7
N
N
7
N
N
A
LEU
13
A
LEU
10
HELX_P
A
ILE
17
A
ILE
14
5
1
5
A
PRO
37
A
PRO
34
HELX_P
A
ARG
41
A
ARG
38
5
2
5
A
PRO
42
A
PRO
39
HELX_P
A
PHE
49
A
PHE
46
1
3
8
A
THR
61
A
THR
58
HELX_P
A
LEU
73
A
LEU
70
1
4
13
A
LYS
98
A
LYS
95
HELX_P
A
ARG
101
A
ARG
98
5
5
4
A
VAL
102
A
VAL
99
HELX_P
A
LEU
107
A
LEU
104
1
6
6
A
PRO
124
A
PRO
121
HELX_P
A
GLU
134
A
GLU
131
1
7
11
A
TYR
182
A
TYR
179
HELX_P
A
GLY
195
A
GLY
192
1
8
14
A
THR
219
A
THR
216
HELX_P
A
GLY
234
A
GLY
231
1
9
16
A
GLU
236
A
GLU
233
HELX_P
A
ILE
243
A
ILE
240
1
10
8
A
GLU
247
A
GLU
244
HELX_P
A
GLU
251
A
GLU
248
5
11
5
A
LYS
259
A
LYS
256
HELX_P
A
HIS
268
A
HIS
265
1
12
10
A
THR
308
A
THR
305
HELX_P
A
LYS
315
A
LYS
312
1
13
8
B
TYR
41
B
TYR
41
HELX_P
B
LEU
53
B
LEU
53
1
14
13
C
PRO
13
C
PRO
12
HELX_P
C
GLY
31
C
GLY
30
1
15
19
C
GLY
36
C
GLY
35
HELX_P
C
ARG
46
C
ARG
45
1
16
11
C
PRO
60
C
PRO
59
HELX_P
C
VAL
64
C
VAL
63
5
17
5
C
HIS
66
C
HIS
65
HELX_P
C
GLU
75
C
GLU
74
1
18
10
C
SER
83
C
SER
82
HELX_P
C
ALA
91
C
ALA
90
1
19
9
C
PRO
105
C
PRO
104
HELX_P
C
LYS
107
C
LYS
106
5
20
3
C
ALA
108
C
ALA
107
HELX_P
C
MET
123
C
MET
122
1
21
16
disulf
2.045
B
CYS
8
B
SG
CYS
8
1_555
B
CYS
23
B
SG
CYS
23
1_555
disulf
2.067
B
CYS
8
B
SG
CYS
8
1_555
B
CYS
11
B
SG
CYS
11
1_555
disulf
2.096
B
CYS
8
B
SG
CYS
8
1_555
B
CYS
20
B
SG
CYS
20
1_555
disulf
2.019
B
CYS
11
B
SG
CYS
11
1_555
B
CYS
23
B
SG
CYS
23
1_555
disulf
2.062
B
CYS
11
B
SG
CYS
11
1_555
B
CYS
20
B
SG
CYS
20
1_555
disulf
2.064
B
CYS
20
B
SG
CYS
20
1_555
B
CYS
23
B
SG
CYS
23
1_555
hydrog
WATSON-CRICK
D
G
1
D
N1
G
1
1_555
D
C
54
D
N3
C
54
1_555
hydrog
WATSON-CRICK
D
G
1
D
N2
G
1
1_555
D
C
54
D
O2
C
54
1_555
hydrog
WATSON-CRICK
D
G
1
D
O6
G
1
1_555
D
C
54
D
N4
C
54
1_555
hydrog
WATSON-CRICK
D
G
2
D
N1
G
2
1_555
D
C
53
D
N3
C
53
1_555
hydrog
WATSON-CRICK
D
G
2
D
N2
G
2
1_555
D
C
53
D
O2
C
53
1_555
hydrog
WATSON-CRICK
D
G
2
D
O6
G
2
1_555
D
C
53
D
N4
C
53
1_555
hydrog
WATSON-CRICK
D
G
3
D
N1
G
3
1_555
D
C
52
D
N3
C
52
1_555
hydrog
WATSON-CRICK
D
G
3
D
N2
G
3
1_555
D
C
52
D
O2
C
52
1_555
hydrog
WATSON-CRICK
D
G
3
D
O6
G
3
1_555
D
C
52
D
N4
C
52
1_555
hydrog
WATSON-CRICK
D
C
4
D
N3
C
4
1_555
D
G
51
D
N1
G
51
1_555
hydrog
WATSON-CRICK
D
C
4
D
N4
C
4
1_555
D
G
51
D
O6
G
51
1_555
hydrog
WATSON-CRICK
D
C
4
D
O2
C
4
1_555
D
G
51
D
N2
G
51
1_555
hydrog
WATSON-CRICK
D
C
5
D
N3
C
5
1_555
D
G
50
D
N1
G
50
1_555
hydrog
WATSON-CRICK
D
C
5
D
N4
C
5
1_555
D
G
50
D
O6
G
50
1_555
hydrog
WATSON-CRICK
D
C
5
D
O2
C
5
1_555
D
G
50
D
N2
G
50
1_555
hydrog
WATSON-CRICK
D
A
6
D
N1
A
6
1_555
D
U
49
D
N3
U
49
1_555
hydrog
WATSON-CRICK
D
A
6
D
N6
A
6
1_555
D
U
49
D
O4
U
49
1_555
hydrog
WATSON-CRICK
D
C
7
D
N3
C
7
1_555
D
G
48
D
N1
G
48
1_555
hydrog
WATSON-CRICK
D
C
7
D
N4
C
7
1_555
D
G
48
D
O6
G
48
1_555
hydrog
WATSON-CRICK
D
C
7
D
O2
C
7
1_555
D
G
48
D
N2
G
48
1_555
hydrog
WATSON-CRICK
D
G
8
D
N1
G
8
1_555
D
C
47
D
N3
C
47
1_555
hydrog
WATSON-CRICK
D
G
8
D
N2
G
8
1_555
D
C
47
D
O2
C
47
1_555
hydrog
WATSON-CRICK
D
G
8
D
O6
G
8
1_555
D
C
47
D
N4
C
47
1_555
hydrog
WATSON-CRICK
D
G
9
D
N1
G
9
1_555
D
C
46
D
N3
C
46
1_555
hydrog
WATSON-CRICK
D
G
9
D
N2
G
9
1_555
D
C
46
D
O2
C
46
1_555
hydrog
WATSON-CRICK
D
G
9
D
O6
G
9
1_555
D
C
46
D
N4
C
46
1_555
hydrog
WATSON-CRICK
D
A
11
D
N1
A
11
1_555
E
U
16
E
N3
U
12
1_555
hydrog
WATSON-CRICK
D
A
11
D
N6
A
11
1_555
E
U
16
E
O4
U
12
1_555
hydrog
A-U PAIR
D
A
12
D
N6
A
12
1_555
E
U
15
E
O4
U
11
1_555
hydrog
WATSON-CRICK
D
C
13
D
N3
C
13
1_555
E
G
14
E
N1
G
10
1_555
hydrog
WATSON-CRICK
D
C
13
D
N4
C
13
1_555
E
G
14
E
O6
G
10
1_555
hydrog
WATSON-CRICK
D
C
13
D
O2
C
13
1_555
E
G
14
E
N2
G
10
1_555
hydrog
WATSON-CRICK
D
C
14
D
N3
C
14
1_555
E
G
13
E
N1
G
9
1_555
hydrog
WATSON-CRICK
D
C
14
D
N4
C
14
1_555
E
G
13
E
O6
G
9
1_555
hydrog
WATSON-CRICK
D
C
14
D
O2
C
14
1_555
E
G
13
E
N2
G
9
1_555
hydrog
G-C PAIR
D
G
15
D
N1
G
15
1_555
E
C
12
E
O2
C
8
1_555
hydrog
TYPE_28_PAIR
D
G
17
D
N1
G
17
1_555
D
U
39
D
O2
U
39
1_555
hydrog
TYPE_28_PAIR
D
G
17
D
O6
G
17
1_555
D
U
39
D
N3
U
39
1_555
hydrog
WATSON-CRICK
D
C
18
D
N3
C
18
1_555
D
G
38
D
N1
G
38
1_555
hydrog
WATSON-CRICK
D
C
18
D
N4
C
18
1_555
D
G
38
D
O6
G
38
1_555
hydrog
WATSON-CRICK
D
C
18
D
O2
C
18
1_555
D
G
38
D
N2
G
38
1_555
hydrog
WATSON-CRICK
D
G
19
D
N1
G
19
1_555
D
C
37
D
N3
C
37
1_555
hydrog
WATSON-CRICK
D
G
19
D
N2
G
19
1_555
D
C
37
D
O2
C
37
1_555
hydrog
WATSON-CRICK
D
G
19
D
O6
G
19
1_555
D
C
37
D
N4
C
37
1_555
hydrog
WATSON-CRICK
D
C
20
D
N3
C
20
1_555
D
G
36
D
N1
G
36
1_555
hydrog
WATSON-CRICK
D
C
20
D
N4
C
20
1_555
D
G
36
D
O6
G
36
1_555
hydrog
WATSON-CRICK
D
C
20
D
O2
C
20
1_555
D
G
36
D
N2
G
36
1_555
hydrog
WATSON-CRICK
D
G
21
D
N1
G
21
1_555
D
C
35
D
N3
C
35
1_555
hydrog
WATSON-CRICK
D
G
21
D
N2
G
21
1_555
D
C
35
D
O2
C
35
1_555
hydrog
WATSON-CRICK
D
G
21
D
O6
G
21
1_555
D
C
35
D
N4
C
35
1_555
hydrog
WATSON-CRICK
D
G
22
D
N1
G
22
1_555
D
C
34
D
N3
C
34
1_555
hydrog
WATSON-CRICK
D
G
22
D
N2
G
22
1_555
D
C
34
D
O2
C
34
1_555
hydrog
WATSON-CRICK
D
G
22
D
O6
G
22
1_555
D
C
34
D
N4
C
34
1_555
hydrog
TYPE_28_PAIR
D
U
23
D
N3
U
23
1_555
D
G
33
D
O6
G
33
1_555
hydrog
TYPE_28_PAIR
D
U
23
D
O2
U
23
1_555
D
G
33
D
N1
G
33
1_555
hydrog
TYPE_11_PAIR
D
G
24
D
N2
G
24
1_555
D
A
32
D
N7
A
32
1_555
hydrog
TYPE_11_PAIR
D
G
24
D
N3
G
24
1_555
D
A
32
D
N6
A
32
1_555
hydrog
TYPE_11_PAIR
D
A
25
D
N6
A
25
1_555
D
G
31
D
N3
G
31
1_555
hydrog
TYPE_11_PAIR
D
A
25
D
N7
A
25
1_555
D
G
31
D
N2
G
31
1_555
hydrog
C-G PAIR
D
C
41
D
N4
C
41
1_555
E
G
9
E
N3
G
5
1_555
hydrog
WATSON-CRICK
D
G
42
D
N1
G
42
1_555
E
C
8
E
N3
C
4
1_555
hydrog
WATSON-CRICK
D
G
42
D
N2
G
42
1_555
E
C
8
E
O2
C
4
1_555
hydrog
WATSON-CRICK
D
G
42
D
O6
G
42
1_555
E
C
8
E
N4
C
4
1_555
hydrog
WATSON-CRICK
D
C
43
D
N3
C
43
1_555
E
G
7
E
N1
G
3
1_555
hydrog
WATSON-CRICK
D
C
43
D
N4
C
43
1_555
E
G
7
E
O6
G
3
1_555
hydrog
WATSON-CRICK
D
C
43
D
O2
C
43
1_555
E
G
7
E
N2
G
3
1_555
hydrog
WATSON-CRICK
D
U
44
D
N3
U
44
1_555
E
A
6
E
N1
A
2
1_555
hydrog
WATSON-CRICK
D
U
44
D
O4
U
44
1_555
E
A
6
E
N6
A
2
1_555
hydrog
C-G PAIR
D
C
45
D
N4
C
45
1_555
E
G
5
E
O6
G
1
1_555
hydrog
C-A MISPAIR
D
C
53
D
O2
C
53
1_555
D
A
55
D
N6
A
55
1_555
ISOMERASE/RNA BINDING PROTEIN/RNA
H/ACA pseudouridine synthase, Isomerase, tRNA processing, Ribonucleoprotein, Ribosome biogenesis, rRNA processing, Ribosomal protein, RNA-binding, ISOMERASE-RNA BINDING PROTEIN-RNA complex
C
ASP
59
C
ASP
58
1
C
PRO
60
C
PRO
59
5.85
TRUB_PYRFU
UNP
1
1
Q7LWY0
MARDEVRRILPADIKREVLIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGT
LDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRLRTRKVYYIEV
LEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAI
QPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDV
EKVFMPRDWYPKLWEKRDRS
NOP10_PYRFU
UNP
2
1
Q8U1R4
MRFRIRKCPKCGRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREVLGIGRKEK
RL7A_PYRFU
UNP
3
1
Q8U160
MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYV
PSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK
1
340
3LWV
4
343
Q7LWY0
A
1
1
340
1
60
3LWV
1
60
Q8U1R4
B
2
1
60
1
123
3LWV
2
124
Q8U160
C
3
1
123
7
4
8
3
4
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
VAL
21
A
VAL
18
A
ILE
23
A
ILE
20
A
ILE
277
A
ILE
274
A
HIS
281
A
HIS
278
A
LYS
255
A
LYS
252
A
ILE
258
A
ILE
255
A
LEU
289
A
LEU
286
A
THR
294
A
THR
291
A
LEU
299
A
LEU
296
A
ALA
305
A
ALA
302
A
ILE
319
A
ILE
316
A
VAL
326
A
VAL
323
A
LEU
272
A
LEU
269
A
ALA
273
A
ALA
270
A
ALA
78
A
ALA
75
A
HIS
80
A
HIS
77
A
SER
89
A
SER
86
A
LEU
96
A
LEU
93
A
ALA
198
A
ALA
195
A
SER
208
A
SER
205
A
PHE
211
A
PHE
208
A
LYS
212
A
LYS
209
A
GLY
137
A
GLY
134
A
GLN
141
A
GLN
138
A
ARG
154
A
ARG
151
A
GLU
167
A
GLU
164
A
ASP
170
A
ASP
167
A
VAL
177
A
VAL
174
A
LYS
111
A
LYS
108
A
LEU
119
A
LEU
116
A
ALA
198
A
ALA
195
A
SER
208
A
SER
205
A
SER
89
A
SER
86
A
LEU
96
A
LEU
93
A
GLY
50
A
GLY
47
A
LYS
56
A
LYS
53
A
GLN
244
A
GLN
241
A
PRO
245
A
PRO
242
B
TYR
14
B
TYR
14
B
THR
15
B
THR
15
B
ARG
6
B
ARG
6
B
LYS
7
B
LYS
7
B
LYS
28
B
LYS
28
B
VAL
29
B
VAL
29
C
LYS
32
C
LYS
31
C
LYS
35
C
LYS
34
C
SER
99
C
SER
98
C
GLU
104
C
GLU
103
C
LEU
51
C
LEU
50
C
ALA
55
C
ALA
54
C
TYR
78
C
TYR
77
C
VAL
81
C
VAL
80
BINDING SITE FOR RESIDUE ZN B 61
Software
5
A
GLY
195
A
GLY
192
5
3_555
A
VAL
196
A
VAL
193
5
3_555
B
CYS
11
B
CYS
11
5
1_555
B
VAL
22
B
VAL
22
5
1_555
B
CYS
23
B
CYS
23
5
1_555
18
P 21 21 2