0.005352 0.000000 0.000000 0.000000 0.015546 0.000000 0.000000 0.000000 0.011996 0.00000 0.00000 0.00000 Zhou, J. Liang, B. Lv, C. Yang, W. Li, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 186.838 64.326 83.362 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C9 H13 N2 O8 P 308.182 y 2'-DEOXYURIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Biochemistry BICHAW 0033 0006-2960 49 6276 6281 10.1021/bi1006699 20575532 Functional and Structural Impact of Target Uridine Substitutions on the H/ACA Ribonucleoprotein Particle Pseudouridine Synthase . 2010 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 GRAPHITE SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 22-ID APS 1.5418 SYNCHROTRON APS BEAMLINE 22-ID 38625.027 Pseudouridine synthase Cbf5 5.4.99.- 1 man polymer 7242.618 Ribosome biogenesis protein Nop10 1 man polymer 13414.664 50S ribosomal protein L7Ae 1 man polymer 18687.193 H/ACA RNA 1 syn polymer 4174.511 5'-R(*GP*AP*GP*CP*GP*(du)P*GP*CP*GP*GP*UP*UP*U)-3' 1 syn polymer 65.409 ZINC ION 1 syn non-polymer 18.015 water 9 nat water tRNA pseudouridine 55 synthase, Psi55 synthase, tRNA-uridine isomerase, tRNA pseudouridylate synthase no no MARDEVRRILPADIKREVLIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGT LDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRLRTRKVYYIEV LEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAI QPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDV EKVFMPRDWYPKLWEKRDRS MARDEVRRILPADIKREVLIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGT LDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRLRTRKVYYIEV LEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAI QPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDV EKVFMPRDWYPKLWEKRDRS A polypeptide(L) no no MRFRIRKCPKCGRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREVLGIGRKEK MRFRIRKCPKCGRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREVLGIGRKEK B polypeptide(L) no no MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYV PSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYV PSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK C polypeptide(L) no no GGGCCACGGAAACCGCGCGCGGUGAUCAAUGAGCCGCGUUCGCUCCCGUGGCCCACAA GGGCCACGGAAACCGCGCGCGGUGAUCAAUGAGCCGCGUUCGCUCCCGUGGCCCACAA D polyribonucleotide no no GAGCG(DU)GCGGUUU GAGCGUGCGGUUU E polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 2261 Pyrococcus furiosus 562 Escherichia coli sample 2261 Pyrococcus furiosus 562 Escherichia coli sample 2261 Pyrococcus furiosus 562 Escherichia coli 1 3.06 59.81 VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP -6.189 1 19 D 1 D 54 -3.369 D_G1:C54_D 1 -16.014 -0.594 -0.161 -0.031 0.011 1 19 D 2 D 53 1.174 D_G2:C53_D 2 -11.796 -0.237 0.039 -0.027 0.989 1 19 D 3 D 52 -1.200 D_G3:C52_D 3 -15.286 -0.121 0.063 -0.123 4.321 1 19 D 4 D 51 -1.276 D_C4:G51_D 4 -17.794 0.285 0.026 -0.044 2.434 1 19 D 5 D 50 1.097 D_C5:G50_D 5 -10.460 -0.125 0.164 0.137 0.857 1 20 D 6 D 49 1.260 D_A6:U49_D 6 -16.256 0.056 -0.192 -0.008 10.788 1 19 D 7 D 48 0.305 D_C7:G48_D 7 -19.969 0.455 -0.280 -0.079 -3.692 1 19 D 8 D 47 4.025 D_G8:C47_D 8 -12.142 -0.260 0.106 -0.193 4.324 1 19 D 9 D 46 -3.241 D_G9:C46_D 9 -10.969 0.559 0.503 -0.114 10.664 1 E 5 D 45 -8.469 E_G5:C45_D 10 -4.794 0.167 0.705 0.288 -6.565 1 20 E 6 D 44 3.167 E_A6:U44_D 11 -3.376 0.002 0.260 0.256 -15.874 1 19 E 7 D 43 -2.592 E_G7:C43_D 12 -6.945 -0.006 -0.331 0.089 -10.403 1 19 E 8 D 42 -0.742 E_C8:G42_D 13 1.306 0.062 0.278 0.074 -1.494 6 E 9 D 41 -10.757 E_G9:C41_D 14 0.525 7.547 0.660 -4.865 14.807 1 20 D 11 E 16 1.761 D_A11:U16_E 15 -1.488 0.832 -0.253 0.242 -0.599 D 12 E 15 -13.089 D_A12:U15_E 16 -9.036 1.276 0.033 0.464 11.114 1 19 D 13 E 14 5.654 D_C13:G14_E 17 -23.842 -0.311 -0.774 -0.128 9.152 1 19 D 14 E 13 0.208 D_C14:G13_E 18 -1.106 0.257 0.768 -0.188 2.621 D 15 E 12 -1.213 D_G15:C12_E 19 1.576 -2.221 -0.732 -0.155 3.345 1 28 D 17 D 39 10.809 D_G17:U39_D 20 -15.450 -1.503 0.194 -0.334 13.509 1 19 D 18 D 38 0.138 D_C18:G38_D 21 -25.652 -0.172 -0.134 -0.315 -6.508 1 19 D 19 D 37 -2.527 D_G19:C37_D 22 -15.965 0.124 -0.140 -0.249 8.452 1 19 D 20 D 36 2.330 D_C20:G36_D 23 -12.482 -0.213 -0.082 -0.036 0.089 1 19 D 21 D 35 -1.592 D_G21:C35_D 24 -17.262 -0.355 0.231 -0.286 -12.960 1 19 D 22 D 34 0.281 D_G22:C34_D 25 -13.644 -0.042 -0.439 -0.008 5.176 1 28 D 23 D 33 5.004 D_U23:G33_D 26 -5.617 2.518 0.097 -0.444 25.282 9 11 D 24 D 32 7.813 D_G24:A32_D 27 8.976 6.730 0.661 -4.281 -22.922 10 11 D 25 D 31 5.911 D_A25:G31_D 28 18.954 -6.791 0.369 -4.604 2.796 36.617 D D 1 2 9.875 D D 54 53 3.091 6.175 -0.027 -1.551 DD_G1G2:C53C54_DD 1 -1.367 2.186 36.085 -3.237 -0.128 2.620 32.060 D D 2 3 15.676 D D 53 52 3.135 8.552 -0.500 -1.660 DD_G2G3:C52C53_DD 2 -2.143 3.928 30.855 -4.387 0.559 3.123 35.183 D D 3 4 4.566 D D 52 51 3.235 2.757 0.099 -1.333 DD_G3C4:G51C52_DD 3 -0.337 0.558 35.077 -2.605 -0.212 2.668 32.805 D D 4 5 13.375 D D 51 50 3.160 7.490 0.299 -1.808 DD_C4C5:G50G51_DD 4 -1.050 1.875 31.945 -4.364 -0.691 2.498 31.155 D D 5 6 20.011 D D 50 49 3.218 10.538 -0.470 -1.513 DD_C5A6:U49G50_DD 5 2.054 -3.901 29.290 -4.631 1.229 2.770 35.413 D D 6 7 10.300 D D 49 48 3.004 6.226 0.224 -1.164 DD_A6C7:G48U49_DD 6 3.236 -5.352 34.733 -2.730 0.056 1.746 34.137 D D 7 8 37.259 D D 48 47 3.464 20.467 0.373 -1.772 DD_C7G8:C47G48_DD 7 -1.100 2.002 27.446 -5.905 -0.790 2.744 36.881 D D 8 9 9.065 D D 47 46 3.004 5.713 -0.010 -1.506 DD_G8G9:C46C47_DD 8 -1.183 1.877 36.433 -3.065 -0.125 2.990 42.619 D E 9 5 2.620 D D 46 45 2.931 1.901 -1.576 -1.648 DE_G9G5:C45C46_DD 9 -4.108 5.662 42.389 -2.442 1.793 2.648 38.142 E E 5 6 17.601 D D 45 44 3.394 11.319 0.379 -2.176 EE_G5A6:U44C45_DD 10 4.171 -6.486 36.252 -4.688 -0.079 2.623 30.350 E E 6 7 18.271 D D 44 43 3.496 9.366 0.129 -2.241 EE_A6G7:C43U44_DD 11 5.327 -10.391 28.415 -6.104 0.790 3.164 33.744 E E 7 8 -2.907 D D 43 42 3.105 -1.684 0.287 -2.070 EE_G7C8:G42C43_DD 12 -3.104 5.356 33.564 -3.304 -0.978 3.379 55.101 E E 8 9 -3.292 D D 42 41 3.208 -3.041 -1.485 -1.335 EE_C8G9:C41G42_DD 13 -4.735 5.126 54.835 -1.261 1.322 3.031 34.250 D D 11 12 16.386 E E 16 15 3.739 9.529 -0.917 -2.022 DD_A11A12:U15U16_EE 14 0.795 -1.368 32.926 -5.019 1.689 2.373 20.747 D D 12 13 13.983 E E 15 14 2.926 4.814 0.680 -2.029 DD_A12C13:G14U15_EE 15 9.175 -26.651 17.999 -7.446 1.566 2.649 43.810 D D 13 14 11.864 E E 14 13 3.441 8.595 0.102 -2.418 DD_C13C14:G13G14_EE 16 -16.550 22.843 39.821 -4.044 -1.683 3.801 28.717 D D 14 15 -3.615 E E 13 12 3.518 -1.765 1.128 -1.877 DD_C14G15:C12G13_EE 17 8.688 -17.797 27.342 -3.329 -0.031 5.564 94.340 D D 15 17 15.716 E D 12 39 5.990 22.905 2.646 -0.925 DD_G15G17:U39C12_DE 18 -6.327 4.341 91.992 -1.379 -2.011 2.881 35.588 D D 17 18 6.945 D D 39 38 3.016 4.235 -0.394 -0.875 DD_G17C18:G38U39_DD 19 1.216 -1.994 35.323 -1.989 0.805 3.170 37.287 D D 18 19 19.157 D D 38 37 3.778 12.036 -0.601 -1.427 DD_C18G19:C37G38_DD 20 -2.188 3.483 35.290 -3.975 0.623 2.879 29.251 D D 19 20 1.904 D D 37 36 2.919 0.961 0.191 -1.319 DD_G19C20:G36C37_DD 21 0.717 -1.420 29.227 -2.796 -0.241 2.337 37.007 D D 20 21 26.822 D D 36 35 3.290 16.454 -0.040 -1.448 DD_C20G21:C35G36_DD 22 -2.369 3.861 33.180 -4.297 -0.227 2.437 34.028 D D 21 22 28.319 D D 35 34 3.720 15.905 0.447 -1.957 DD_G21G22:C34C35_DD 23 4.648 -8.275 29.825 -5.902 -0.016 2.440 39.541 D D 22 23 17.315 D D 34 33 2.830 11.555 0.366 -0.963 DD_G22U23:G33C34_DD 24 -0.481 0.721 37.877 -2.543 -0.587 3.002 50.319 D D 23 24 15.289 D D 33 32 2.972 12.846 1.198 0.010 DD_U23G24:A32G33_DD 25 5.943 -7.073 48.412 -0.846 -1.012 2.298 -15.010 D D 24 25 35.559 D D 32 31 4.550 -8.682 0.292 -2.308 DD_G24A25:G31A32_DD 26 2.028 8.305 -12.088 17.200 3.071 repository Initial release Version format compliance 1 0 2010-07-14 1 1 2011-07-13 RCSB Y RCSB 2010-02-24 REL REL ZN ZINC ION HOH water In vitro transcription sample commercial source sample ZN 1 6 ZN ZN 61 B HOH 2 7 HOH HOH 2 A HOH 3 7 HOH HOH 3 A HOH 5 7 HOH HOH 344 A HOH 7 7 HOH HOH 345 A HOH 9 7 HOH HOH 346 A HOH 6 7 HOH HOH 62 B HOH 1 7 HOH HOH 59 D HOH 4 7 HOH HOH 60 D HOH 8 7 HOH HOH 61 D n 1 4 A n 2 5 A n 3 6 A n 4 7 A n 5 8 A n 6 9 A n 7 10 A ARG 11 n 8 ARG 11 A ILE 12 n 9 ILE 12 A LEU 13 n 10 LEU 13 A PRO 14 n 11 PRO 14 A ALA 15 n 12 ALA 15 A ASP 16 n 13 ASP 16 A ILE 17 n 14 ILE 17 A LYS 18 n 15 LYS 18 A ARG 19 n 16 ARG 19 A GLU 20 n 17 GLU 20 A VAL 21 n 18 VAL 21 A LEU 22 n 19 LEU 22 A ILE 23 n 20 ILE 23 A LYS 24 n 21 LYS 24 A ASP 25 n 22 ASP 25 A GLU 26 n 23 GLU 26 A ASN 27 n 24 ASN 27 A ALA 28 n 25 ALA 28 A GLU 29 n 26 GLU 29 A THR 30 n 27 THR 30 A ASN 31 n 28 ASN 31 A PRO 32 n 29 PRO 32 A ASP 33 n 30 ASP 33 A TRP 34 n 31 TRP 34 A GLY 35 n 32 GLY 35 A PHE 36 n 33 PHE 36 A PRO 37 n 34 PRO 37 A PRO 38 n 35 PRO 38 A GLU 39 n 36 GLU 39 A LYS 40 n 37 LYS 40 A ARG 41 n 38 ARG 41 A PRO 42 n 39 PRO 42 A ILE 43 n 40 ILE 43 A GLU 44 n 41 GLU 44 A MET 45 n 42 MET 45 A HIS 46 n 43 HIS 46 A ILE 47 n 44 ILE 47 A GLN 48 n 45 GLN 48 A PHE 49 n 46 PHE 49 A GLY 50 n 47 GLY 50 A VAL 51 n 48 VAL 51 A ILE 52 n 49 ILE 52 A ASN 53 n 50 ASN 53 A LEU 54 n 51 LEU 54 A ASP 55 n 52 ASP 55 A LYS 56 n 53 LYS 56 A PRO 57 n 54 PRO 57 A PRO 58 n 55 PRO 58 A GLY 59 n 56 GLY 59 A PRO 60 n 57 PRO 60 A THR 61 n 58 THR 61 A SER 62 n 59 SER 62 A HIS 63 n 60 HIS 63 A GLU 64 n 61 GLU 64 A VAL 65 n 62 VAL 65 A VAL 66 n 63 VAL 66 A ALA 67 n 64 ALA 67 A TRP 68 n 65 TRP 68 A ILE 69 n 66 ILE 69 A LYS 70 n 67 LYS 70 A LYS 71 n 68 LYS 71 A ILE 72 n 69 ILE 72 A LEU 73 n 70 LEU 73 A ASN 74 n 71 ASN 74 A LEU 75 n 72 LEU 75 A GLU 76 n 73 GLU 76 A LYS 77 n 74 LYS 77 A ALA 78 n 75 ALA 78 A GLY 79 n 76 GLY 79 A HIS 80 n 77 HIS 80 A GLY 81 n 78 GLY 81 A GLY 82 n 79 GLY 82 A THR 83 n 80 THR 83 A LEU 84 n 81 LEU 84 A ASP 85 n 82 ASP 85 A PRO 86 n 83 PRO 86 A LYS 87 n 84 LYS 87 A VAL 88 n 85 VAL 88 A SER 89 n 86 SER 89 A GLY 90 n 87 GLY 90 A VAL 91 n 88 VAL 91 A LEU 92 n 89 LEU 92 A PRO 93 n 90 PRO 93 A VAL 94 n 91 VAL 94 A ALA 95 n 92 ALA 95 A LEU 96 n 93 LEU 96 A GLU 97 n 94 GLU 97 A LYS 98 n 95 LYS 98 A ALA 99 n 96 ALA 99 A THR 100 n 97 THR 100 A ARG 101 n 98 ARG 101 A VAL 102 n 99 VAL 102 A VAL 103 n 100 VAL 103 A GLN 104 n 101 GLN 104 A ALA 105 n 102 ALA 105 A LEU 106 n 103 LEU 106 A LEU 107 n 104 LEU 107 A PRO 108 n 105 PRO 108 A ALA 109 n 106 ALA 109 A GLY 110 n 107 GLY 110 A LYS 111 n 108 LYS 111 A GLU 112 n 109 GLU 112 A TYR 113 n 110 TYR 113 A VAL 114 n 111 VAL 114 A ALA 115 n 112 ALA 115 A LEU 116 n 113 LEU 116 A MET 117 n 114 MET 117 A HIS 118 n 115 HIS 118 A LEU 119 n 116 LEU 119 A HIS 120 n 117 HIS 120 A GLY 121 n 118 GLY 121 A ASP 122 n 119 ASP 122 A VAL 123 n 120 VAL 123 A PRO 124 n 121 PRO 124 A GLU 125 n 122 GLU 125 A ASP 126 n 123 ASP 126 A LYS 127 n 124 LYS 127 A ILE 128 n 125 ILE 128 A ILE 129 n 126 ILE 129 A GLN 130 n 127 GLN 130 A VAL 131 n 128 VAL 131 A MET 132 n 129 MET 132 A LYS 133 n 130 LYS 133 A GLU 134 n 131 GLU 134 A PHE 135 n 132 PHE 135 A GLU 136 n 133 GLU 136 A GLY 137 n 134 GLY 137 A GLU 138 n 135 GLU 138 A ILE 139 n 136 ILE 139 A ILE 140 n 137 ILE 140 A GLN 141 n 138 GLN 141 A ARG 142 n 139 ARG 142 A n 140 143 A n 141 144 A n 142 145 A n 143 146 A n 144 147 A n 145 148 A n 146 149 A n 147 150 A n 148 151 A n 149 152 A LEU 153 n 150 LEU 153 A ARG 154 n 151 ARG 154 A THR 155 n 152 THR 155 A ARG 156 n 153 ARG 156 A LYS 157 n 154 LYS 157 A VAL 158 n 155 VAL 158 A TYR 159 n 156 TYR 159 A TYR 160 n 157 TYR 160 A ILE 161 n 158 ILE 161 A GLU 162 n 159 GLU 162 A VAL 163 n 160 VAL 163 A LEU 164 n 161 LEU 164 A GLU 165 n 162 GLU 165 A ILE 166 n 163 ILE 166 A GLU 167 n 164 GLU 167 A GLY 168 n 165 GLY 168 A ARG 169 n 166 ARG 169 A ASP 170 n 167 ASP 170 A VAL 171 n 168 VAL 171 A LEU 172 n 169 LEU 172 A PHE 173 n 170 PHE 173 A ARG 174 n 171 ARG 174 A VAL 175 n 172 VAL 175 A GLY 176 n 173 GLY 176 A VAL 177 n 174 VAL 177 A GLU 178 n 175 GLU 178 A ALA 179 n 176 ALA 179 A GLY 180 n 177 GLY 180 A THR 181 n 178 THR 181 A TYR 182 n 179 TYR 182 A ILE 183 n 180 ILE 183 A ARG 184 n 181 ARG 184 A SER 185 n 182 SER 185 A LEU 186 n 183 LEU 186 A ILE 187 n 184 ILE 187 A HIS 188 n 185 HIS 188 A HIS 189 n 186 HIS 189 A ILE 190 n 187 ILE 190 A GLY 191 n 188 GLY 191 A LEU 192 n 189 LEU 192 A ALA 193 n 190 ALA 193 A LEU 194 n 191 LEU 194 A GLY 195 n 192 GLY 195 A VAL 196 n 193 VAL 196 A GLY 197 n 194 GLY 197 A ALA 198 n 195 ALA 198 A HIS 199 n 196 HIS 199 A MET 200 n 197 MET 200 A SER 201 n 198 SER 201 A GLU 202 n 199 GLU 202 A LEU 203 n 200 LEU 203 A ARG 204 n 201 ARG 204 A ARG 205 n 202 ARG 205 A THR 206 n 203 THR 206 A ARG 207 n 204 ARG 207 A SER 208 n 205 SER 208 A GLY 209 n 206 GLY 209 A PRO 210 n 207 PRO 210 A PHE 211 n 208 PHE 211 A LYS 212 n 209 LYS 212 A GLU 213 n 210 GLU 213 A ASP 214 n 211 ASP 214 A GLU 215 n 212 GLU 215 A THR 216 n 213 THR 216 A LEU 217 n 214 LEU 217 A ILE 218 n 215 ILE 218 A THR 219 n 216 THR 219 A LEU 220 n 217 LEU 220 A HIS 221 n 218 HIS 221 A ASP 222 n 219 ASP 222 A LEU 223 n 220 LEU 223 A VAL 224 n 221 VAL 224 A ASP 225 n 222 ASP 225 A TYR 226 n 223 TYR 226 A TYR 227 n 224 TYR 227 A TYR 228 n 225 TYR 228 A PHE 229 n 226 PHE 229 A TRP 230 n 227 TRP 230 A LYS 231 n 228 LYS 231 A GLU 232 n 229 GLU 232 A ASP 233 n 230 ASP 233 A GLY 234 n 231 GLY 234 A ILE 235 n 232 ILE 235 A GLU 236 n 233 GLU 236 A GLU 237 n 234 GLU 237 A TYR 238 n 235 TYR 238 A PHE 239 n 236 PHE 239 A ARG 240 n 237 ARG 240 A LYS 241 n 238 LYS 241 A ALA 242 n 239 ALA 242 A ILE 243 n 240 ILE 243 A GLN 244 n 241 GLN 244 A PRO 245 n 242 PRO 245 A MET 246 n 243 MET 246 A GLU 247 n 244 GLU 247 A LYS 248 n 245 LYS 248 A ALA 249 n 246 ALA 249 A VAL 250 n 247 VAL 250 A GLU 251 n 248 GLU 251 A HIS 252 n 249 HIS 252 A LEU 253 n 250 LEU 253 A PRO 254 n 251 PRO 254 A LYS 255 n 252 LYS 255 A VAL 256 n 253 VAL 256 A TRP 257 n 254 TRP 257 A ILE 258 n 255 ILE 258 A LYS 259 n 256 LYS 259 A ASP 260 n 257 ASP 260 A SER 261 n 258 SER 261 A ALA 262 n 259 ALA 262 A VAL 263 n 260 VAL 263 A ALA 264 n 261 ALA 264 A ALA 265 n 262 ALA 265 A VAL 266 n 263 VAL 266 A THR 267 n 264 THR 267 A HIS 268 n 265 HIS 268 A GLY 269 n 266 GLY 269 A ALA 270 n 267 ALA 270 A ASP 271 n 268 ASP 271 A LEU 272 n 269 LEU 272 A ALA 273 n 270 ALA 273 A VAL 274 n 271 VAL 274 A PRO 275 n 272 PRO 275 A GLY 276 n 273 GLY 276 A ILE 277 n 274 ILE 277 A ALA 278 n 275 ALA 278 A LYS 279 n 276 LYS 279 A LEU 280 n 277 LEU 280 A HIS 281 n 278 HIS 281 A ALA 282 n 279 ALA 282 A GLY 283 n 280 GLY 283 A ILE 284 n 281 ILE 284 A LYS 285 n 282 LYS 285 A ARG 286 n 283 ARG 286 A GLY 287 n 284 GLY 287 A ASP 288 n 285 ASP 288 A LEU 289 n 286 LEU 289 A VAL 290 n 287 VAL 290 A ALA 291 n 288 ALA 291 A ILE 292 n 289 ILE 292 A MET 293 n 290 MET 293 A THR 294 n 291 THR 294 A LEU 295 n 292 LEU 295 A LYS 296 n 293 LYS 296 A ASP 297 n 294 ASP 297 A GLU 298 n 295 GLU 298 A LEU 299 n 296 LEU 299 A VAL 300 n 297 VAL 300 A ALA 301 n 298 ALA 301 A LEU 302 n 299 LEU 302 A GLY 303 n 300 GLY 303 A LYS 304 n 301 LYS 304 A ALA 305 n 302 ALA 305 A MET 306 n 303 MET 306 A MET 307 n 304 MET 307 A THR 308 n 305 THR 308 A SER 309 n 306 SER 309 A GLN 310 n 307 GLN 310 A GLU 311 n 308 GLU 311 A MET 312 n 309 MET 312 A LEU 313 n 310 LEU 313 A GLU 314 n 311 GLU 314 A LYS 315 n 312 LYS 315 A THR 316 n 313 THR 316 A LYS 317 n 314 LYS 317 A GLY 318 n 315 GLY 318 A ILE 319 n 316 ILE 319 A ALA 320 n 317 ALA 320 A VAL 321 n 318 VAL 321 A ASP 322 n 319 ASP 322 A VAL 323 n 320 VAL 323 A GLU 324 n 321 GLU 324 A LYS 325 n 322 LYS 325 A VAL 326 n 323 VAL 326 A PHE 327 n 324 PHE 327 A MET 328 n 325 MET 328 A PRO 329 n 326 PRO 329 A ARG 330 n 327 ARG 330 A ASP 331 n 328 ASP 331 A TRP 332 n 329 TRP 332 A TYR 333 n 330 TYR 333 A PRO 334 n 331 PRO 334 A LYS 335 n 332 LYS 335 A LEU 336 n 333 LEU 336 A TRP 337 n 334 TRP 337 A n 335 338 A n 336 339 A n 337 340 A n 338 341 A n 339 342 A n 340 343 A n 1 1 B n 2 2 B PHE 3 n 3 PHE 3 B ARG 4 n 4 ARG 4 B ILE 5 n 5 ILE 5 B ARG 6 n 6 ARG 6 B LYS 7 n 7 LYS 7 B CYS 8 n 8 CYS 8 B PRO 9 n 9 PRO 9 B LYS 10 n 10 LYS 10 B CYS 11 n 11 CYS 11 B GLY 12 n 12 GLY 12 B ARG 13 n 13 ARG 13 B TYR 14 n 14 TYR 14 B THR 15 n 15 THR 15 B LEU 16 n 16 LEU 16 B LYS 17 n 17 LYS 17 B GLU 18 n 18 GLU 18 B VAL 19 n 19 VAL 19 B CYS 20 n 20 CYS 20 B PRO 21 n 21 PRO 21 B VAL 22 n 22 VAL 22 B CYS 23 n 23 CYS 23 B GLY 24 n 24 GLY 24 B GLU 25 n 25 GLU 25 B LYS 26 n 26 LYS 26 B THR 27 n 27 THR 27 B LYS 28 n 28 LYS 28 B VAL 29 n 29 VAL 29 B ALA 30 n 30 ALA 30 B HIS 31 n 31 HIS 31 B PRO 32 n 32 PRO 32 B PRO 33 n 33 PRO 33 B ARG 34 n 34 ARG 34 B PHE 35 n 35 PHE 35 B SER 36 n 36 SER 36 B PRO 37 n 37 PRO 37 B GLU 38 n 38 GLU 38 B ASP 39 n 39 ASP 39 B PRO 40 n 40 PRO 40 B TYR 41 n 41 TYR 41 B GLY 42 n 42 GLY 42 B GLU 43 n 43 GLU 43 B TYR 44 n 44 TYR 44 B ARG 45 n 45 ARG 45 B ARG 46 n 46 ARG 46 B ARG 47 n 47 ARG 47 B TRP 48 n 48 TRP 48 B LYS 49 n 49 LYS 49 B ARG 50 n 50 ARG 50 B GLU 51 n 51 GLU 51 B VAL 52 n 52 VAL 52 B LEU 53 n 53 LEU 53 B GLY 54 n 54 GLY 54 B ILE 55 n 55 ILE 55 B n 56 56 B n 57 57 B n 58 58 B n 59 59 B n 60 60 B n 1 2 C n 2 3 C LYS 4 n 3 LYS 4 C PRO 5 n 4 PRO 5 C SER 6 n 5 SER 6 C TYR 7 n 6 TYR 7 C VAL 8 n 7 VAL 8 C LYS 9 n 8 LYS 9 C PHE 10 n 9 PHE 10 C GLU 11 n 10 GLU 11 C VAL 12 n 11 VAL 12 C PRO 13 n 12 PRO 13 C LYS 14 n 13 LYS 14 C GLU 15 n 14 GLU 15 C LEU 16 n 15 LEU 16 C ALA 17 n 16 ALA 17 C GLU 18 n 17 GLU 18 C LYS 19 n 18 LYS 19 C ALA 20 n 19 ALA 20 C LEU 21 n 20 LEU 21 C GLN 22 n 21 GLN 22 C ALA 23 n 22 ALA 23 C VAL 24 n 23 VAL 24 C GLU 25 n 24 GLU 25 C ILE 26 n 25 ILE 26 C ALA 27 n 26 ALA 27 C ARG 28 n 27 ARG 28 C ASP 29 n 28 ASP 29 C THR 30 n 29 THR 30 C GLY 31 n 30 GLY 31 C LYS 32 n 31 LYS 32 C ILE 33 n 32 ILE 33 C ARG 34 n 33 ARG 34 C LYS 35 n 34 LYS 35 C GLY 36 n 35 GLY 36 C THR 37 n 36 THR 37 C ASN 38 n 37 ASN 38 C GLU 39 n 38 GLU 39 C THR 40 n 39 THR 40 C THR 41 n 40 THR 41 C LYS 42 n 41 LYS 42 C ALA 43 n 42 ALA 43 C VAL 44 n 43 VAL 44 C GLU 45 n 44 GLU 45 C ARG 46 n 45 ARG 46 C GLY 47 n 46 GLY 47 C GLN 48 n 47 GLN 48 C ALA 49 n 48 ALA 49 C LYS 50 n 49 LYS 50 C LEU 51 n 50 LEU 51 C VAL 52 n 51 VAL 52 C ILE 53 n 52 ILE 53 C ILE 54 n 53 ILE 54 C ALA 55 n 54 ALA 55 C GLU 56 n 55 GLU 56 C ASP 57 n 56 ASP 57 C VAL 58 n 57 VAL 58 C ASP 59 n 58 ASP 59 C PRO 60 n 59 PRO 60 C GLU 61 n 60 GLU 61 C GLU 62 n 61 GLU 62 C ILE 63 n 62 ILE 63 C VAL 64 n 63 VAL 64 C ALA 65 n 64 ALA 65 C HIS 66 n 65 HIS 66 C LEU 67 n 66 LEU 67 C PRO 68 n 67 PRO 68 C PRO 69 n 68 PRO 69 C LEU 70 n 69 LEU 70 C CYS 71 n 70 CYS 71 C GLU 72 n 71 GLU 72 C GLU 73 n 72 GLU 73 C LYS 74 n 73 LYS 74 C GLU 75 n 74 GLU 75 C ILE 76 n 75 ILE 76 C PRO 77 n 76 PRO 77 C TYR 78 n 77 TYR 78 C ILE 79 n 78 ILE 79 C TYR 80 n 79 TYR 80 C VAL 81 n 80 VAL 81 C PRO 82 n 81 PRO 82 C SER 83 n 82 SER 83 C LYS 84 n 83 LYS 84 C LYS 85 n 84 LYS 85 C GLU 86 n 85 GLU 86 C LEU 87 n 86 LEU 87 C GLY 88 n 87 GLY 88 C ALA 89 n 88 ALA 89 C ALA 90 n 89 ALA 90 C ALA 91 n 90 ALA 91 C GLY 92 n 91 GLY 92 C ILE 93 n 92 ILE 93 C GLU 94 n 93 GLU 94 C VAL 95 n 94 VAL 95 C ALA 96 n 95 ALA 96 C ALA 97 n 96 ALA 97 C ALA 98 n 97 ALA 98 C SER 99 n 98 SER 99 C VAL 100 n 99 VAL 100 C ALA 101 n 100 ALA 101 C ILE 102 n 101 ILE 102 C ILE 103 n 102 ILE 103 C GLU 104 n 103 GLU 104 C PRO 105 n 104 PRO 105 C GLY 106 n 105 GLY 106 C LYS 107 n 106 LYS 107 C ALA 108 n 107 ALA 108 C ARG 109 n 108 ARG 109 C ASP 110 n 109 ASP 110 C LEU 111 n 110 LEU 111 C VAL 112 n 111 VAL 112 C GLU 113 n 112 GLU 113 C GLU 114 n 113 GLU 114 C ILE 115 n 114 ILE 115 C ALA 116 n 115 ALA 116 C MET 117 n 116 MET 117 C LYS 118 n 117 LYS 118 C VAL 119 n 118 VAL 119 C LYS 120 n 119 LYS 120 C GLU 121 n 120 GLU 121 C LEU 122 n 121 LEU 122 C MET 123 n 122 MET 123 C n 123 124 C G 1 n 1 G 1 D G 2 n 2 G 2 D G 3 n 3 G 3 D C 4 n 4 C 4 D C 5 n 5 C 5 D A 6 n 6 A 6 D C 7 n 7 C 7 D G 8 n 8 G 8 D G 9 n 9 G 9 D A 10 n 10 A 10 D A 11 n 11 A 11 D A 12 n 12 A 12 D C 13 n 13 C 13 D C 14 n 14 C 14 D G 15 n 15 G 15 D C 16 n 16 C 16 D G 17 n 17 G 17 D C 18 n 18 C 18 D G 19 n 19 G 19 D C 20 n 20 C 20 D G 21 n 21 G 21 D G 22 n 22 G 22 D U 23 n 23 U 23 D G 24 n 24 G 24 D A 25 n 25 A 25 D U 26 n 26 U 26 D C 27 n 27 C 27 D A 28 n 28 A 28 D A 29 n 29 A 29 D U 30 n 30 U 30 D G 31 n 31 G 31 D A 32 n 32 A 32 D G 33 n 33 G 33 D C 34 n 34 C 34 D C 35 n 35 C 35 D G 36 n 36 G 36 D C 37 n 37 C 37 D G 38 n 38 G 38 D U 39 n 39 U 39 D U 40 n 40 U 40 D C 41 n 41 C 41 D G 42 n 42 G 42 D C 43 n 43 C 43 D U 44 n 44 U 44 D C 45 n 45 C 45 D C 46 n 46 C 46 D C 47 n 47 C 47 D G 48 n 48 G 48 D U 49 n 49 U 49 D G 50 n 50 G 50 D G 51 n 51 G 51 D C 52 n 52 C 52 D C 53 n 53 C 53 D C 54 n 54 C 54 D A 55 n 55 A 55 D C 56 n 56 C 56 D A 57 n 57 A 57 D A 58 n 58 A 58 D G 5 n 1 G 5 E A 6 n 2 A 6 E G 7 n 3 G 7 E C 8 n 4 C 8 E G 9 n 5 G 9 E n 6 10 E n 7 11 E C 12 n 8 C 12 E G 13 n 9 G 13 E G 14 n 10 G 14 E U 15 n 11 U 15 E U 16 n 12 U 16 E U 17 n 13 U 17 E 0.4699 0.0291 -0.0440 0.9340 -0.1837 0.4367 -0.0644 -0.2254 0.0226 -0.0536 0.1098 0.1325 0.0223 0.1010 -0.0400 0.4650 0.0671 0.0071 0.6341 -0.0001 0.6223 refined 37.9726 8.9146 20.9908 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 all author_and_software_defined_assembly PISA 5 pentameric 10460 -89 30230 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 22 A N LEU 19 A O LEU 280 A O LEU 277 A O ALA 278 A O ALA 275 A N TRP 257 A N TRP 254 A N VAL 256 A N VAL 253 A O MET 293 A O MET 290 A N ILE 292 A N ILE 289 A O VAL 300 A O VAL 297 A N LYS 304 A N LYS 301 A O ASP 322 A O ASP 319 A O ALA 320 A O ALA 317 A N LEU 272 A N LEU 269 A N GLY 79 A N GLY 76 A O ALA 95 A O ALA 92 A N SER 89 A N SER 86 A O ARG 205 A O ARG 202 A N SER 208 A N SER 205 A O PHE 211 A O PHE 208 A N ILE 139 A N ILE 136 A O ARG 156 A O ARG 153 A N GLU 165 A N GLU 162 A O LEU 172 A O LEU 169 A O VAL 171 A O VAL 168 A N MET 117 A N MET 114 A N HIS 118 A N HIS 115 A O HIS 199 A O HIS 196 A O ARG 205 A O ARG 202 A N SER 89 A N SER 86 A O LEU 92 A O LEU 89 A N LEU 54 A N LEU 51 A N VAL 51 A N VAL 48 A O GLN 244 A O GLN 241 B O THR 15 B O THR 15 B N ARG 6 B N ARG 6 B N LYS 7 B N LYS 7 B O LYS 28 B O LYS 28 C N ARG 34 C N ARG 33 C O ALA 101 C O ALA 100 C O VAL 100 C O VAL 99 C N ILE 53 C N ILE 52 C N ILE 54 C N ILE 53 C O ILE 79 C O ILE 78 1 A MET 4 A MET 1 1 Y 1 A ALA 5 A ALA 2 1 Y 1 A ARG 6 A ARG 3 1 Y 1 A ASP 7 A ASP 4 1 Y 1 A GLU 8 A GLU 5 1 Y 1 A VAL 9 A VAL 6 1 Y 1 A ARG 10 A ARG 7 1 Y 1 A PRO 143 A PRO 140 1 Y 1 A PRO 144 A PRO 141 1 Y 1 A LEU 145 A LEU 142 1 Y 1 A ARG 146 A ARG 143 1 Y 1 A SER 147 A SER 144 1 Y 1 A ALA 148 A ALA 145 1 Y 1 A VAL 149 A VAL 146 1 Y 1 A LYS 150 A LYS 147 1 Y 1 A ARG 151 A ARG 148 1 Y 1 A ARG 152 A ARG 149 1 Y 1 A GLU 338 A GLU 335 1 Y 1 A LYS 339 A LYS 336 1 Y 1 A ARG 340 A ARG 337 1 Y 1 A ASP 341 A ASP 338 1 Y 1 A ARG 342 A ARG 339 1 Y 1 A SER 343 A SER 340 1 Y 1 B MET 1 B MET 1 1 Y 1 B ARG 2 B ARG 2 1 Y 1 B GLY 56 B GLY 56 1 Y 1 B ARG 57 B ARG 57 1 Y 1 B LYS 58 B LYS 58 1 Y 1 B GLU 59 B GLU 59 1 Y 1 B LYS 60 B LYS 60 1 Y 1 C MET 2 C MET 1 1 Y 1 C ALA 3 C ALA 2 1 Y 1 C LYS 124 C LYS 123 1 Y 1 E DU 10 E DU 6 1 Y 1 E G 11 E G 7 1 Y 1 11.18 1.10 114.20 125.38 B B B CA CB SG CYS CYS CYS 8 8 8 N 1 9.20 1.10 114.20 123.40 B B B CA CB SG CYS CYS CYS 20 20 20 N 1 12.39 1.20 119.70 132.09 D D D C3' O3' P G G A 24 24 25 Y 1 -5.98 0.80 108.20 102.22 D D D O4' C1' N1 U U U 26 26 26 N 1 7.48 0.70 108.50 115.98 D D D O4' C1' N1 U U U 40 40 40 N 1 9.75 1.20 119.70 129.45 D D D C3' O3' P U U C 40 40 41 Y 1 4.25 0.70 108.50 112.75 D D D O4' C1' N1 C C C 41 41 41 N 1 5.23 0.70 108.50 113.73 D D D O4' C1' N1 C C C 56 56 56 N 1 3.02 0.40 120.30 123.32 D D D C6 N1 C2 C C C 56 56 56 N 1 11.45 1.20 119.70 131.15 D D D C3' O3' P C C A 56 56 57 Y 1 A ALA 78 -172.60 142.64 1 A GLU 97 56.09 -122.48 1 A ALA 249 -67.65 0.40 1 A LYS 279 170.88 141.44 1 C ALA 108 -84.56 36.72 12.1318 -0.0000 -0.0000 -9.2505 0.0000 -11.3260 0.2453 0.2017 0.2039 2.499 34.639 1725 34408 5.01 51.18 0.50 1 1.89 MOLECULAR REPLACEMENT 0.90 1.11 ML FLAT BULK SOLVENT MODEL 49.481 0.341 2.499 34.639 9 5361 1 1470 3881 0.008 5660 1.241 7989 22.580 2478 0.072 951 0.004 754 0.3652 0.3178 2.5726 102 2204 41.00 0.4053 0.3143 2.6556 128 2421 45.00 0.3712 0.3153 2.7505 134 2616 49.00 0.3878 0.3080 2.8605 148 2732 52.00 0.3791 0.2930 2.9906 143 2791 52.00 0.3298 0.2610 3.1482 134 2789 52.00 0.2922 0.2403 3.3453 156 2810 53.00 0.2782 0.2022 3.6034 150 2804 53.00 0.2312 0.1683 3.9655 165 2807 53.00 0.2001 0.1388 4.5383 152 2827 53.00 0.1707 0.1432 5.7136 156 2859 54.00 0.2085 0.1947 34.6425 157 3023 56.00 2.499 50.00 3LWV 34570 0.135 1 11.8 96.8 2.50 2.59 2852 0.645 5.7 81.1 data collection HKL-2000 phasing MOLREP refinement PHENIX (phenix.refine) data reduction HKL-2000 data scaling HKL-2000 Pseudouridine synthase Cbf5 (E.C.5.4.99.-), Ribosome biogenesis protein Nop10, 50S ribosomal protein L7Ae/RNA complex Structure of H/ACA RNP bound to a substrate RNA containing 2'-deoxyuridine 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N 7 N N 7 N N A LEU 13 A LEU 10 HELX_P A ILE 17 A ILE 14 5 1 5 A PRO 37 A PRO 34 HELX_P A ARG 41 A ARG 38 5 2 5 A PRO 42 A PRO 39 HELX_P A PHE 49 A PHE 46 1 3 8 A THR 61 A THR 58 HELX_P A LEU 73 A LEU 70 1 4 13 A LYS 98 A LYS 95 HELX_P A ARG 101 A ARG 98 5 5 4 A VAL 102 A VAL 99 HELX_P A LEU 107 A LEU 104 1 6 6 A PRO 124 A PRO 121 HELX_P A GLU 134 A GLU 131 1 7 11 A TYR 182 A TYR 179 HELX_P A GLY 195 A GLY 192 1 8 14 A THR 219 A THR 216 HELX_P A GLY 234 A GLY 231 1 9 16 A GLU 236 A GLU 233 HELX_P A ILE 243 A ILE 240 1 10 8 A GLU 247 A GLU 244 HELX_P A GLU 251 A GLU 248 5 11 5 A LYS 259 A LYS 256 HELX_P A HIS 268 A HIS 265 1 12 10 A THR 308 A THR 305 HELX_P A LYS 315 A LYS 312 1 13 8 B TYR 41 B TYR 41 HELX_P B LEU 53 B LEU 53 1 14 13 C PRO 13 C PRO 12 HELX_P C GLY 31 C GLY 30 1 15 19 C GLY 36 C GLY 35 HELX_P C ARG 46 C ARG 45 1 16 11 C PRO 60 C PRO 59 HELX_P C VAL 64 C VAL 63 5 17 5 C HIS 66 C HIS 65 HELX_P C GLU 75 C GLU 74 1 18 10 C SER 83 C SER 82 HELX_P C ALA 91 C ALA 90 1 19 9 C PRO 105 C PRO 104 HELX_P C LYS 107 C LYS 106 5 20 3 C ALA 108 C ALA 107 HELX_P C MET 123 C MET 122 1 21 16 disulf 2.045 B CYS 8 B SG CYS 8 1_555 B CYS 23 B SG CYS 23 1_555 disulf 2.067 B CYS 8 B SG CYS 8 1_555 B CYS 11 B SG CYS 11 1_555 disulf 2.096 B CYS 8 B SG CYS 8 1_555 B CYS 20 B SG CYS 20 1_555 disulf 2.019 B CYS 11 B SG CYS 11 1_555 B CYS 23 B SG CYS 23 1_555 disulf 2.062 B CYS 11 B SG CYS 11 1_555 B CYS 20 B SG CYS 20 1_555 disulf 2.064 B CYS 20 B SG CYS 20 1_555 B CYS 23 B SG CYS 23 1_555 hydrog WATSON-CRICK D G 1 D N1 G 1 1_555 D C 54 D N3 C 54 1_555 hydrog WATSON-CRICK D G 1 D N2 G 1 1_555 D C 54 D O2 C 54 1_555 hydrog WATSON-CRICK D G 1 D O6 G 1 1_555 D C 54 D N4 C 54 1_555 hydrog WATSON-CRICK D G 2 D N1 G 2 1_555 D C 53 D N3 C 53 1_555 hydrog WATSON-CRICK D G 2 D N2 G 2 1_555 D C 53 D O2 C 53 1_555 hydrog WATSON-CRICK D G 2 D O6 G 2 1_555 D C 53 D N4 C 53 1_555 hydrog WATSON-CRICK D G 3 D N1 G 3 1_555 D C 52 D N3 C 52 1_555 hydrog WATSON-CRICK D G 3 D N2 G 3 1_555 D C 52 D O2 C 52 1_555 hydrog WATSON-CRICK D G 3 D O6 G 3 1_555 D C 52 D N4 C 52 1_555 hydrog WATSON-CRICK D C 4 D N3 C 4 1_555 D G 51 D N1 G 51 1_555 hydrog WATSON-CRICK D C 4 D N4 C 4 1_555 D G 51 D O6 G 51 1_555 hydrog WATSON-CRICK D C 4 D O2 C 4 1_555 D G 51 D N2 G 51 1_555 hydrog WATSON-CRICK D C 5 D N3 C 5 1_555 D G 50 D N1 G 50 1_555 hydrog WATSON-CRICK D C 5 D N4 C 5 1_555 D G 50 D O6 G 50 1_555 hydrog WATSON-CRICK D C 5 D O2 C 5 1_555 D G 50 D N2 G 50 1_555 hydrog WATSON-CRICK D A 6 D N1 A 6 1_555 D U 49 D N3 U 49 1_555 hydrog WATSON-CRICK D A 6 D N6 A 6 1_555 D U 49 D O4 U 49 1_555 hydrog WATSON-CRICK D C 7 D N3 C 7 1_555 D G 48 D N1 G 48 1_555 hydrog WATSON-CRICK D C 7 D N4 C 7 1_555 D G 48 D O6 G 48 1_555 hydrog WATSON-CRICK D C 7 D O2 C 7 1_555 D G 48 D N2 G 48 1_555 hydrog WATSON-CRICK D G 8 D N1 G 8 1_555 D C 47 D N3 C 47 1_555 hydrog WATSON-CRICK D G 8 D N2 G 8 1_555 D C 47 D O2 C 47 1_555 hydrog WATSON-CRICK D G 8 D O6 G 8 1_555 D C 47 D N4 C 47 1_555 hydrog WATSON-CRICK D G 9 D N1 G 9 1_555 D C 46 D N3 C 46 1_555 hydrog WATSON-CRICK D G 9 D N2 G 9 1_555 D C 46 D O2 C 46 1_555 hydrog WATSON-CRICK D G 9 D O6 G 9 1_555 D C 46 D N4 C 46 1_555 hydrog WATSON-CRICK D A 11 D N1 A 11 1_555 E U 16 E N3 U 12 1_555 hydrog WATSON-CRICK D A 11 D N6 A 11 1_555 E U 16 E O4 U 12 1_555 hydrog A-U PAIR D A 12 D N6 A 12 1_555 E U 15 E O4 U 11 1_555 hydrog WATSON-CRICK D C 13 D N3 C 13 1_555 E G 14 E N1 G 10 1_555 hydrog WATSON-CRICK D C 13 D N4 C 13 1_555 E G 14 E O6 G 10 1_555 hydrog WATSON-CRICK D C 13 D O2 C 13 1_555 E G 14 E N2 G 10 1_555 hydrog WATSON-CRICK D C 14 D N3 C 14 1_555 E G 13 E N1 G 9 1_555 hydrog WATSON-CRICK D C 14 D N4 C 14 1_555 E G 13 E O6 G 9 1_555 hydrog WATSON-CRICK D C 14 D O2 C 14 1_555 E G 13 E N2 G 9 1_555 hydrog G-C PAIR D G 15 D N1 G 15 1_555 E C 12 E O2 C 8 1_555 hydrog TYPE_28_PAIR D G 17 D N1 G 17 1_555 D U 39 D O2 U 39 1_555 hydrog TYPE_28_PAIR D G 17 D O6 G 17 1_555 D U 39 D N3 U 39 1_555 hydrog WATSON-CRICK D C 18 D N3 C 18 1_555 D G 38 D N1 G 38 1_555 hydrog WATSON-CRICK D C 18 D N4 C 18 1_555 D G 38 D O6 G 38 1_555 hydrog WATSON-CRICK D C 18 D O2 C 18 1_555 D G 38 D N2 G 38 1_555 hydrog WATSON-CRICK D G 19 D N1 G 19 1_555 D C 37 D N3 C 37 1_555 hydrog WATSON-CRICK D G 19 D N2 G 19 1_555 D C 37 D O2 C 37 1_555 hydrog WATSON-CRICK D G 19 D O6 G 19 1_555 D C 37 D N4 C 37 1_555 hydrog WATSON-CRICK D C 20 D N3 C 20 1_555 D G 36 D N1 G 36 1_555 hydrog WATSON-CRICK D C 20 D N4 C 20 1_555 D G 36 D O6 G 36 1_555 hydrog WATSON-CRICK D C 20 D O2 C 20 1_555 D G 36 D N2 G 36 1_555 hydrog WATSON-CRICK D G 21 D N1 G 21 1_555 D C 35 D N3 C 35 1_555 hydrog WATSON-CRICK D G 21 D N2 G 21 1_555 D C 35 D O2 C 35 1_555 hydrog WATSON-CRICK D G 21 D O6 G 21 1_555 D C 35 D N4 C 35 1_555 hydrog WATSON-CRICK D G 22 D N1 G 22 1_555 D C 34 D N3 C 34 1_555 hydrog WATSON-CRICK D G 22 D N2 G 22 1_555 D C 34 D O2 C 34 1_555 hydrog WATSON-CRICK D G 22 D O6 G 22 1_555 D C 34 D N4 C 34 1_555 hydrog TYPE_28_PAIR D U 23 D N3 U 23 1_555 D G 33 D O6 G 33 1_555 hydrog TYPE_28_PAIR D U 23 D O2 U 23 1_555 D G 33 D N1 G 33 1_555 hydrog TYPE_11_PAIR D G 24 D N2 G 24 1_555 D A 32 D N7 A 32 1_555 hydrog TYPE_11_PAIR D G 24 D N3 G 24 1_555 D A 32 D N6 A 32 1_555 hydrog TYPE_11_PAIR D A 25 D N6 A 25 1_555 D G 31 D N3 G 31 1_555 hydrog TYPE_11_PAIR D A 25 D N7 A 25 1_555 D G 31 D N2 G 31 1_555 hydrog C-G PAIR D C 41 D N4 C 41 1_555 E G 9 E N3 G 5 1_555 hydrog WATSON-CRICK D G 42 D N1 G 42 1_555 E C 8 E N3 C 4 1_555 hydrog WATSON-CRICK D G 42 D N2 G 42 1_555 E C 8 E O2 C 4 1_555 hydrog WATSON-CRICK D G 42 D O6 G 42 1_555 E C 8 E N4 C 4 1_555 hydrog WATSON-CRICK D C 43 D N3 C 43 1_555 E G 7 E N1 G 3 1_555 hydrog WATSON-CRICK D C 43 D N4 C 43 1_555 E G 7 E O6 G 3 1_555 hydrog WATSON-CRICK D C 43 D O2 C 43 1_555 E G 7 E N2 G 3 1_555 hydrog WATSON-CRICK D U 44 D N3 U 44 1_555 E A 6 E N1 A 2 1_555 hydrog WATSON-CRICK D U 44 D O4 U 44 1_555 E A 6 E N6 A 2 1_555 hydrog C-G PAIR D C 45 D N4 C 45 1_555 E G 5 E O6 G 1 1_555 hydrog C-A MISPAIR D C 53 D O2 C 53 1_555 D A 55 D N6 A 55 1_555 ISOMERASE/RNA BINDING PROTEIN/RNA H/ACA pseudouridine synthase, Isomerase, tRNA processing, Ribonucleoprotein, Ribosome biogenesis, rRNA processing, Ribosomal protein, RNA-binding, ISOMERASE-RNA BINDING PROTEIN-RNA complex C ASP 59 C ASP 58 1 C PRO 60 C PRO 59 5.85 TRUB_PYRFU UNP 1 1 Q7LWY0 MARDEVRRILPADIKREVLIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGT LDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRLRTRKVYYIEV LEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAI QPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDV EKVFMPRDWYPKLWEKRDRS NOP10_PYRFU UNP 2 1 Q8U1R4 MRFRIRKCPKCGRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREVLGIGRKEK RL7A_PYRFU UNP 3 1 Q8U160 MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYV PSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK 1 340 3LWV 4 343 Q7LWY0 A 1 1 340 1 60 3LWV 1 60 Q8U1R4 B 2 1 60 1 123 3LWV 2 124 Q8U160 C 3 1 123 7 4 8 3 4 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel A VAL 21 A VAL 18 A ILE 23 A ILE 20 A ILE 277 A ILE 274 A HIS 281 A HIS 278 A LYS 255 A LYS 252 A ILE 258 A ILE 255 A LEU 289 A LEU 286 A THR 294 A THR 291 A LEU 299 A LEU 296 A ALA 305 A ALA 302 A ILE 319 A ILE 316 A VAL 326 A VAL 323 A LEU 272 A LEU 269 A ALA 273 A ALA 270 A ALA 78 A ALA 75 A HIS 80 A HIS 77 A SER 89 A SER 86 A LEU 96 A LEU 93 A ALA 198 A ALA 195 A SER 208 A SER 205 A PHE 211 A PHE 208 A LYS 212 A LYS 209 A GLY 137 A GLY 134 A GLN 141 A GLN 138 A ARG 154 A ARG 151 A GLU 167 A GLU 164 A ASP 170 A ASP 167 A VAL 177 A VAL 174 A LYS 111 A LYS 108 A LEU 119 A LEU 116 A ALA 198 A ALA 195 A SER 208 A SER 205 A SER 89 A SER 86 A LEU 96 A LEU 93 A GLY 50 A GLY 47 A LYS 56 A LYS 53 A GLN 244 A GLN 241 A PRO 245 A PRO 242 B TYR 14 B TYR 14 B THR 15 B THR 15 B ARG 6 B ARG 6 B LYS 7 B LYS 7 B LYS 28 B LYS 28 B VAL 29 B VAL 29 C LYS 32 C LYS 31 C LYS 35 C LYS 34 C SER 99 C SER 98 C GLU 104 C GLU 103 C LEU 51 C LEU 50 C ALA 55 C ALA 54 C TYR 78 C TYR 77 C VAL 81 C VAL 80 BINDING SITE FOR RESIDUE ZN B 61 Software 5 A GLY 195 A GLY 192 5 3_555 A VAL 196 A VAL 193 5 3_555 B CYS 11 B CYS 11 5 1_555 B VAL 22 B VAL 22 5 1_555 B CYS 23 B CYS 23 5 1_555 18 P 21 21 2