0.037523
0.015313
0.013262
0.000000
0.035067
0.003322
0.000000
0.000000
0.031301
0.00000
0.00000
0.00000
Walsh, M.A.
Schneider, T.
Sieker, L.C.
Dauter, Z.
Lamzin, V.
Wilson, K.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
88.30
107.40
112.20
26.650
30.800
33.630
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
N O3 -1
62.005
NITRATE ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
54
522
546
10.1107/S0907444997013656
9761848
Refinement of triclinic hen egg-white lysozyme at atomic resolution.
1998
DK
Acta Crystallogr.,Sect.B
ASBSDK
0622
0108-7681
46
54
Refinement of Triclinic Lysozyme: I. Fourier and Least-Squares Methods
1990
DK
Acta Crystallogr.,Sect.B
ASBSDK
0622
0108-7681
46
63
Refinement of Triclinic Lysozyme: II. The Method of Stereochemically Restrained Least Squares
1990
10.2210/pdb3lzt/pdb
pdb_00003lzt
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
120
1
SEGMENTED MIRROR
IMAGE PLATE
1994-12
MARRESEARCH
SI(111)
M
x-ray
1
0.927
1.0
X11
EMBL/DESY, HAMBURG
0.927
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
NITRATE AND ACETATE IONS PRESENT
14331.160
LYSOZYME
3.2.1.17
1
nat
polymer
62.005
NITRATE ION
6
syn
non-polymer
59.044
ACETATE ION
3
syn
non-polymer
18.015
water
245
nat
water
no
no
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
chicken
Gallus
sample
EGG
CYTOPLASM (WHITE)
9031
Gallus gallus
1
1.69
26.9
batch method
4.6
BATCH METHOD USED. 1% PROTEIN SOLUTION IN 100MM SODIUM ACETATE PH 4.5-4.6. SODIUM NITRATE ADDED TO A CONCENTRATION OF 20MGS/ML. CRYSTALS GROWN AT ROOM TEMPERATURE., batch method
4.5-4.6
room temp
database_2
diffrn_source
pdbx_distant_solvent_atoms
pdbx_initial_refinement_model
refine
reflns
reflns_shell
struct_site
repository
Initial release
Version format compliance
Version format compliance
Advisory
Data collection
Database references
Derived calculations
Refinement description
1
0
1998-03-25
1
1
2008-03-25
1
2
2011-07-13
1
3
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_refine.pdbx_method_to_determine_struct
_refine.pdbx_starting_model
_reflns.d_resolution_high
_reflns_shell.d_res_high
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1997-03-23
REL
REL
1
A
O
HOH
2266
8.10
1
A
O
HOH
2270
5.88
1
A
O
HOH
2271
7.30
NO3
NITRATE ION
ACT
ACETATE ION
HOH
water
2LZT
PDB
experimental model
NO3
150
2
NO3
NO3
150
A
NO3
151
2
NO3
NO3
151
A
NO3
152
2
NO3
NO3
152
A
NO3
153
2
NO3
NO3
153
A
NO3
154
2
NO3
NO3
154
A
NO3
155
2
NO3
NO3
155
A
ACT
201
3
ACT
ACT
201
A
ACT
203
3
ACT
ACT
203
A
ACT
204
3
ACT
ACT
204
A
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2062
4
HOH
HOH
2062
A
HOH
2063
4
HOH
HOH
2063
A
HOH
2064
4
HOH
HOH
2064
A
HOH
2065
4
HOH
HOH
2065
A
HOH
2066
4
HOH
HOH
2066
A
HOH
2068
4
HOH
HOH
2068
A
HOH
2069
4
HOH
HOH
2069
A
HOH
2071
4
HOH
HOH
2071
A
HOH
2072
4
HOH
HOH
2072
A
HOH
2074
4
HOH
HOH
2074
A
HOH
2075
4
HOH
HOH
2075
A
HOH
2077
4
HOH
HOH
2077
A
HOH
2078
4
HOH
HOH
2078
A
HOH
2079
4
HOH
HOH
2079
A
HOH
2081
4
HOH
HOH
2081
A
HOH
2082
4
HOH
HOH
2082
A
HOH
2083
4
HOH
HOH
2083
A
HOH
2084
4
HOH
HOH
2084
A
HOH
2085
4
HOH
HOH
2085
A
HOH
2087
4
HOH
HOH
2087
A
HOH
2090
4
HOH
HOH
2090
A
HOH
2091
4
HOH
HOH
2091
A
HOH
2092
4
HOH
HOH
2092
A
HOH
2093
4
HOH
HOH
2093
A
HOH
2094
4
HOH
HOH
2094
A
HOH
2096
4
HOH
HOH
2096
A
HOH
2097
4
HOH
HOH
2097
A
HOH
2098
4
HOH
HOH
2098
A
HOH
2099
4
HOH
HOH
2099
A
HOH
2100
4
HOH
HOH
2100
A
HOH
2101
4
HOH
HOH
2101
A
HOH
2103
4
HOH
HOH
2103
A
HOH
2104
4
HOH
HOH
2104
A
HOH
2107
4
HOH
HOH
2107
A
HOH
2109
4
HOH
HOH
2109
A
HOH
2110
4
HOH
HOH
2110
A
HOH
2113
4
HOH
HOH
2113
A
HOH
2114
4
HOH
HOH
2114
A
HOH
2115
4
HOH
HOH
2115
A
HOH
2116
4
HOH
HOH
2116
A
HOH
2117
4
HOH
HOH
2117
A
HOH
2118
4
HOH
HOH
2118
A
HOH
2119
4
HOH
HOH
2119
A
HOH
2120
4
HOH
HOH
2120
A
HOH
2121
4
HOH
HOH
2121
A
HOH
2122
4
HOH
HOH
2122
A
HOH
2123
4
HOH
HOH
2123
A
HOH
2124
4
HOH
HOH
2124
A
HOH
2125
4
HOH
HOH
2125
A
HOH
2126
4
HOH
HOH
2126
A
HOH
2127
4
HOH
HOH
2127
A
HOH
2128
4
HOH
HOH
2128
A
HOH
2129
4
HOH
HOH
2129
A
HOH
2130
4
HOH
HOH
2130
A
HOH
2131
4
HOH
HOH
2131
A
HOH
2133
4
HOH
HOH
2133
A
HOH
2135
4
HOH
HOH
2135
A
HOH
2136
4
HOH
HOH
2136
A
HOH
2137
4
HOH
HOH
2137
A
HOH
2139
4
HOH
HOH
2139
A
HOH
2140
4
HOH
HOH
2140
A
HOH
2141
4
HOH
HOH
2141
A
HOH
2142
4
HOH
HOH
2142
A
HOH
2143
4
HOH
HOH
2143
A
HOH
2144
4
HOH
HOH
2144
A
HOH
2146
4
HOH
HOH
2146
A
HOH
2147
4
HOH
HOH
2147
A
HOH
2148
4
HOH
HOH
2148
A
HOH
2150
4
HOH
HOH
2150
A
HOH
2151
4
HOH
HOH
2151
A
HOH
2153
4
HOH
HOH
2153
A
HOH
2154
4
HOH
HOH
2154
A
HOH
2156
4
HOH
HOH
2156
A
HOH
2157
4
HOH
HOH
2157
A
HOH
2160
4
HOH
HOH
2160
A
HOH
2161
4
HOH
HOH
2161
A
HOH
2162
4
HOH
HOH
2162
A
HOH
2163
4
HOH
HOH
2163
A
HOH
2164
4
HOH
HOH
2164
A
HOH
2166
4
HOH
HOH
2166
A
HOH
2167
4
HOH
HOH
2167
A
HOH
2170
4
HOH
HOH
2170
A
HOH
2171
4
HOH
HOH
2171
A
HOH
2173
4
HOH
HOH
2173
A
HOH
2175
4
HOH
HOH
2175
A
HOH
2176
4
HOH
HOH
2176
A
HOH
2177
4
HOH
HOH
2177
A
HOH
2179
4
HOH
HOH
2179
A
HOH
2181
4
HOH
HOH
2181
A
HOH
2182
4
HOH
HOH
2182
A
HOH
2183
4
HOH
HOH
2183
A
HOH
2184
4
HOH
HOH
2184
A
HOH
2185
4
HOH
HOH
2185
A
HOH
2186
4
HOH
HOH
2186
A
HOH
2187
4
HOH
HOH
2187
A
HOH
2188
4
HOH
HOH
2188
A
HOH
2189
4
HOH
HOH
2189
A
HOH
2191
4
HOH
HOH
2191
A
HOH
2192
4
HOH
HOH
2192
A
HOH
2193
4
HOH
HOH
2193
A
HOH
2194
4
HOH
HOH
2194
A
HOH
2197
4
HOH
HOH
2197
A
HOH
2198
4
HOH
HOH
2198
A
HOH
2199
4
HOH
HOH
2199
A
HOH
2200
4
HOH
HOH
2200
A
HOH
2201
4
HOH
HOH
2201
A
HOH
2202
4
HOH
HOH
2202
A
HOH
2203
4
HOH
HOH
2203
A
HOH
2204
4
HOH
HOH
2204
A
HOH
2205
4
HOH
HOH
2205
A
HOH
2206
4
HOH
HOH
2206
A
HOH
2209
4
HOH
HOH
2209
A
HOH
2210
4
HOH
HOH
2210
A
HOH
2211
4
HOH
HOH
2211
A
HOH
2212
4
HOH
HOH
2212
A
HOH
2213
4
HOH
HOH
2213
A
HOH
2214
4
HOH
HOH
2214
A
HOH
2215
4
HOH
HOH
2215
A
HOH
2216
4
HOH
HOH
2216
A
HOH
2217
4
HOH
HOH
2217
A
HOH
2218
4
HOH
HOH
2218
A
HOH
2219
4
HOH
HOH
2219
A
HOH
2220
4
HOH
HOH
2220
A
HOH
2222
4
HOH
HOH
2222
A
HOH
2223
4
HOH
HOH
2223
A
HOH
2224
4
HOH
HOH
2224
A
HOH
2226
4
HOH
HOH
2226
A
HOH
2228
4
HOH
HOH
2228
A
HOH
2230
4
HOH
HOH
2230
A
HOH
2231
4
HOH
HOH
2231
A
HOH
2232
4
HOH
HOH
2232
A
HOH
2233
4
HOH
HOH
2233
A
HOH
2234
4
HOH
HOH
2234
A
HOH
2235
4
HOH
HOH
2235
A
HOH
2242
4
HOH
HOH
2242
A
HOH
2246
4
HOH
HOH
2246
A
HOH
2247
4
HOH
HOH
2247
A
HOH
2249
4
HOH
HOH
2249
A
HOH
2250
4
HOH
HOH
2250
A
HOH
2252
4
HOH
HOH
2252
A
HOH
2253
4
HOH
HOH
2253
A
HOH
2254
4
HOH
HOH
2254
A
HOH
2258
4
HOH
HOH
2258
A
HOH
2260
4
HOH
HOH
2260
A
HOH
2261
4
HOH
HOH
2261
A
HOH
2262
4
HOH
HOH
2262
A
HOH
2265
4
HOH
HOH
2265
A
HOH
2266
4
HOH
HOH
2266
A
HOH
2267
4
HOH
HOH
2267
A
HOH
2268
4
HOH
HOH
2268
A
HOH
2270
4
HOH
HOH
2270
A
HOH
2271
4
HOH
HOH
2271
A
HOH
2272
4
HOH
HOH
2272
A
HOH
2275
4
HOH
HOH
2275
A
HOH
2277
4
HOH
HOH
2277
A
HOH
2278
4
HOH
HOH
2278
A
HOH
2280
4
HOH
HOH
2280
A
HOH
2281
4
HOH
HOH
2281
A
HOH
2282
4
HOH
HOH
2282
A
HOH
2283
4
HOH
HOH
2283
A
HOH
2284
4
HOH
HOH
2284
A
HOH
2285
4
HOH
HOH
2285
A
HOH
2286
4
HOH
HOH
2286
A
HOH
2292
4
HOH
HOH
2292
A
HOH
2294
4
HOH
HOH
2294
A
HOH
2295
4
HOH
HOH
2295
A
HOH
2298
4
HOH
HOH
2298
A
HOH
2306
4
HOH
HOH
2306
A
HOH
2309
4
HOH
HOH
2309
A
HOH
2311
4
HOH
HOH
2311
A
HOH
2312
4
HOH
HOH
2312
A
HOH
2315
4
HOH
HOH
2315
A
HOH
2316
4
HOH
HOH
2316
A
HOH
2317
4
HOH
HOH
2317
A
HOH
2318
4
HOH
HOH
2318
A
HOH
2320
4
HOH
HOH
2320
A
HOH
2321
4
HOH
HOH
2321
A
HOH
2323
4
HOH
HOH
2323
A
HOH
2324
4
HOH
HOH
2324
A
HOH
2325
4
HOH
HOH
2325
A
HOH
2327
4
HOH
HOH
2327
A
HOH
2328
4
HOH
HOH
2328
A
HOH
2329
4
HOH
HOH
2329
A
HOH
2330
4
HOH
HOH
2330
A
HOH
2331
4
HOH
HOH
2331
A
HOH
2332
4
HOH
HOH
2332
A
HOH
2333
4
HOH
HOH
2333
A
HOH
2334
4
HOH
HOH
2334
A
HOH
2335
4
HOH
HOH
2335
A
HOH
2339
4
HOH
HOH
2339
A
HOH
2342
4
HOH
HOH
2342
A
HOH
2344
4
HOH
HOH
2344
A
HOH
2346
4
HOH
HOH
2346
A
HOH
2347
4
HOH
HOH
2347
A
LYS
1
n
1
LYS
1
A
VAL
2
n
2
VAL
2
A
PHE
3
n
3
PHE
3
A
GLY
4
n
4
GLY
4
A
ARG
5
n
5
ARG
5
A
CYS
6
n
6
CYS
6
A
GLU
7
n
7
GLU
7
A
LEU
8
n
8
LEU
8
A
ALA
9
n
9
ALA
9
A
ALA
10
n
10
ALA
10
A
ALA
11
n
11
ALA
11
A
MET
12
n
12
MET
12
A
LYS
13
n
13
LYS
13
A
ARG
14
n
14
ARG
14
A
HIS
15
n
15
HIS
15
A
GLY
16
n
16
GLY
16
A
LEU
17
n
17
LEU
17
A
ASP
18
n
18
ASP
18
A
ASN
19
n
19
ASN
19
A
TYR
20
n
20
TYR
20
A
ARG
21
n
21
ARG
21
A
GLY
22
n
22
GLY
22
A
TYR
23
n
23
TYR
23
A
SER
24
n
24
SER
24
A
LEU
25
n
25
LEU
25
A
GLY
26
n
26
GLY
26
A
ASN
27
n
27
ASN
27
A
TRP
28
n
28
TRP
28
A
VAL
29
n
29
VAL
29
A
CYS
30
n
30
CYS
30
A
ALA
31
n
31
ALA
31
A
ALA
32
n
32
ALA
32
A
LYS
33
n
33
LYS
33
A
PHE
34
n
34
PHE
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
ASN
37
n
37
ASN
37
A
PHE
38
n
38
PHE
38
A
ASN
39
n
39
ASN
39
A
THR
40
n
40
THR
40
A
GLN
41
n
41
GLN
41
A
ALA
42
n
42
ALA
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
ARG
45
n
45
ARG
45
A
ASN
46
n
46
ASN
46
A
THR
47
n
47
THR
47
A
ASP
48
n
48
ASP
48
A
GLY
49
n
49
GLY
49
A
SER
50
n
50
SER
50
A
THR
51
n
51
THR
51
A
ASP
52
n
52
ASP
52
A
TYR
53
n
53
TYR
53
A
GLY
54
n
54
GLY
54
A
ILE
55
n
55
ILE
55
A
LEU
56
n
56
LEU
56
A
GLN
57
n
57
GLN
57
A
ILE
58
n
58
ILE
58
A
ASN
59
n
59
ASN
59
A
SER
60
n
60
SER
60
A
ARG
61
n
61
ARG
61
A
TRP
62
n
62
TRP
62
A
TRP
63
n
63
TRP
63
A
CYS
64
n
64
CYS
64
A
ASN
65
n
65
ASN
65
A
ASP
66
n
66
ASP
66
A
GLY
67
n
67
GLY
67
A
ARG
68
n
68
ARG
68
A
THR
69
n
69
THR
69
A
PRO
70
n
70
PRO
70
A
GLY
71
n
71
GLY
71
A
SER
72
n
72
SER
72
A
ARG
73
n
73
ARG
73
A
ASN
74
n
74
ASN
74
A
LEU
75
n
75
LEU
75
A
CYS
76
n
76
CYS
76
A
ASN
77
n
77
ASN
77
A
ILE
78
n
78
ILE
78
A
PRO
79
n
79
PRO
79
A
CYS
80
n
80
CYS
80
A
SER
81
n
81
SER
81
A
ALA
82
n
82
ALA
82
A
LEU
83
n
83
LEU
83
A
LEU
84
n
84
LEU
84
A
SER
85
n
85
SER
85
A
SER
86
n
86
SER
86
A
ASP
87
n
87
ASP
87
A
ILE
88
n
88
ILE
88
A
THR
89
n
89
THR
89
A
ALA
90
n
90
ALA
90
A
SER
91
n
91
SER
91
A
VAL
92
n
92
VAL
92
A
ASN
93
n
93
ASN
93
A
CYS
94
n
94
CYS
94
A
ALA
95
n
95
ALA
95
A
LYS
96
n
96
LYS
96
A
LYS
97
n
97
LYS
97
A
ILE
98
n
98
ILE
98
A
VAL
99
n
99
VAL
99
A
SER
100
n
100
SER
100
A
ASP
101
n
101
ASP
101
A
GLY
102
n
102
GLY
102
A
ASN
103
n
103
ASN
103
A
GLY
104
n
104
GLY
104
A
MET
105
n
105
MET
105
A
ASN
106
n
106
ASN
106
A
ALA
107
n
107
ALA
107
A
TRP
108
n
108
TRP
108
A
VAL
109
n
109
VAL
109
A
ALA
110
n
110
ALA
110
A
TRP
111
n
111
TRP
111
A
ARG
112
n
112
ARG
112
A
ASN
113
n
113
ASN
113
A
ARG
114
n
114
ARG
114
A
CYS
115
n
115
CYS
115
A
LYS
116
n
116
LYS
116
A
GLY
117
n
117
GLY
117
A
THR
118
n
118
THR
118
A
ASP
119
n
119
ASP
119
A
VAL
120
n
120
VAL
120
A
GLN
121
n
121
GLN
121
A
ALA
122
n
122
ALA
122
A
TRP
123
n
123
TRP
123
A
ILE
124
n
124
ILE
124
A
ARG
125
n
125
ARG
125
A
GLY
126
n
126
GLY
126
A
CYS
127
n
127
CYS
127
A
ARG
128
n
128
ARG
128
A
LEU
129
n
129
LEU
129
A
0.0898
0.0925
0.0903
0.093
0.1102
0.1136
1677
1776
3.1
3.0
54623
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
44
A
O
ASN
44
A
N
ASP
52
A
N
ASP
52
1
-15.57
1.90
110.10
94.53
A
A
A
CB
CA
C
SER
SER
SER
24
24
24
B
N
1
13.55
1.90
110.30
123.85
A
A
A
N
CA
CB
THR
THR
THR
43
43
43
B
N
1
-8.46
1.40
112.40
103.94
A
A
A
CA
CB
CG2
THR
THR
THR
43
43
43
B
B
N
1
17.11
2.10
120.10
137.21
A
A
A
CA
C
O
THR
THR
THR
43
43
43
B
B
N
1
-14.41
1.60
122.70
108.29
A
A
A
O
C
N
THR
THR
ASN
43
43
44
B
B
Y
1
-7.93
1.10
119.40
111.47
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
45
45
45
B
B
B
N
1
4.20
0.50
120.30
124.50
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
45
45
45
A
A
A
N
1
8.92
0.50
120.30
129.22
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
45
45
45
B
B
B
N
1
-4.95
0.50
120.30
115.35
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
61
61
61
B
B
B
N
1
-10.13
1.40
123.60
113.47
A
A
A
CD
NE
CZ
ARG
ARG
ARG
68
68
68
A
A
A
N
1
11.67
1.40
123.60
135.27
A
A
A
CD
NE
CZ
ARG
ARG
ARG
68
68
68
B
B
B
N
1
-5.08
0.50
120.30
115.22
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
68
68
68
A
A
A
N
1
7.22
0.50
120.30
127.52
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
68
68
68
B
B
B
N
1
-3.68
0.50
120.30
116.62
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
68
68
68
B
B
B
N
1
12.28
1.90
110.10
122.38
A
A
A
CB
CA
C
SER
SER
SER
72
72
72
B
N
1
3.51
0.50
120.30
123.81
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
1
11.22
1.80
110.60
121.82
A
A
A
N
CA
CB
ASP
ASP
ASP
87
87
87
B
N
1
-16.64
2.20
113.40
96.76
A
A
A
CA
CB
CG
ASP
ASP
ASP
87
87
87
B
B
N
1
20.20
1.90
111.40
131.60
A
A
A
CB
CA
C
VAL
VAL
VAL
99
99
99
B
N
1
29.10
2.70
111.00
140.10
A
A
A
N
CA
C
ASN
ASN
ASN
103
103
103
B
N
1
-14.90
2.00
116.20
101.30
A
A
A
CA
C
N
ASN
ASN
GLY
103
103
104
B
B
Y
1
-12.28
1.60
122.70
110.42
A
A
A
O
C
N
ASN
ASN
ARG
113
113
114
B
B
B
Y
1
5.48
0.50
120.30
125.78
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
114
114
114
A
A
A
N
1
3.17
0.50
120.30
123.47
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
114
114
114
B
B
B
N
1
15.11
2.10
120.10
135.21
A
A
A
CA
C
O
ARG
ARG
ARG
114
114
114
B
B
B
N
1
14.47
1.50
110.80
125.27
A
A
A
N
CA
CB
CYS
CYS
CYS
115
115
115
B
N
1
17.13
2.00
110.40
127.53
A
A
A
CB
CA
C
GLN
GLN
GLN
121
121
121
A
N
1
-12.26
2.00
110.40
98.14
A
A
A
CB
CA
C
GLN
GLN
GLN
121
121
121
B
N
1
18.03
2.60
111.60
129.63
A
A
A
CB
CG
CD
GLN
GLN
GLN
121
121
121
B
B
B
N
1
13.68
1.40
123.60
137.28
A
A
A
CD
NE
CZ
ARG
ARG
ARG
125
125
125
A
A
N
1
3.62
0.50
120.30
123.92
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
125
125
125
A
A
A
N
1
-3.21
0.50
120.30
117.09
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
125
125
125
B
B
B
N
1
42.92
1.40
123.60
166.52
A
A
A
CD
NE
CZ
ARG
ARG
ARG
128
128
128
A
A
A
N
1
-15.49
1.10
119.40
103.91
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
128
128
128
A
A
A
N
1
18.20
0.50
120.30
138.50
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
128
128
128
A
A
A
N
1
A
A
NH1
O
ARG
HOH
128
2044
1.96
A
1_555
1_554
1
A
A
OE1
O
GLN
HOH
121
2222
2.06
B
1_555
1_564
1
A
A
OE2
OD2
GLU
ASP
7
101
2.15
1_555
1_554
1
A
ARG
114
A
-139.91
-39.81
1
A
CYS
115
B
-128.09
-52.80
WATER OCCUPANCIES REFINED. TWO SECTIONS OF THE MAIN CHAIN MODELED IN TWO DISCRETE CONFORMATIONS.
DISORDERED REGIONS WERE MODELED STEREOCHEMICALLY.
0.1136
0.0925
0.093
0.925
20.0
12844
1776
58367
16207
3.0
90.1
1
FREE R
0.0
MOLECULAR REPLACEMENT
ENGH AND HUBER
MOEWS & KRETSINGER
28
923.71
1230.1
0.925
20.0
250
1398
44
0
1104
0.021
0.044
0.025
0.426
0.156
0.173
0.043
0.006
0.029
0.087
0.925
25.
3LZT
58373
3.0
0.028
0.028
1
29.1
2.0
90.1
0.17
0.925
0.94
4.9
0.17
2.0
78.0
data reduction
DENZO
data scaling
SCALEPACK
model building
SHELXL-96
refinement
SHELXL-96
phasing
SHELXL-96
REFINEMENT OF TRICLINIC LYSOZYME AT ATOMIC RESOLUTION
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
ARG
5
A
ARG
5
HELX_P
A
ARG
14
A
ARG
14
1
1
10
A
TYR
20
A
TYR
20
HELX_P
A
GLY
22
A
GLY
22
5
2
3
A
LEU
25
A
LEU
25
HELX_P
A
SER
36
A
SER
36
1
3
12
A
CYS
80
A
CYS
80
HELX_P
A
LEU
84
A
LEU
84
5
4
5
A
THR
89
A
THR
89
HELX_P
A
SER
100
A
SER
100
1
5
12
A
MET
105
A
MET
105
HELX_P
A
ALA
107
A
ALA
107
5
6
3
A
VAL
109
A
VAL
109
HELX_P
A
ARG
114
A
ARG
114
1
7
6
A
VAL
120
A
VAL
120
HELX_P
A
ILE
124
A
ILE
124
5
8
5
disulf
2.012
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
127
A
SG
CYS
127
1_555
disulf
2.026
A
CYS
30
A
SG
CYS
30
1_555
A
CYS
115
A
SG
CYS
115
1_555
disulf
2.023
A
CYS
64
A
SG
CYS
64
1_555
A
CYS
80
A
SG
CYS
80
1_555
disulf
2.021
A
CYS
76
A
SG
CYS
76
1_555
A
CYS
94
A
SG
CYS
94
1_555
HYDROLASE
HYDROLASE, O-GLYCOSYL, GLYCOSIDASE
LYSC_CHICK
UNP
1
1
P00698
MRSLLILVLCFLPLAALGKVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRW
WCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
19
147
3LZT
1
129
P00698
A
1
1
129
2
anti-parallel
A
THR
43
A
THR
43
A
ARG
45
A
ARG
45
A
THR
51
A
THR
51
A
TYR
53
A
TYR
53
BINDING SITE FOR RESIDUE NO3 A 150
A
NO3
150
Software
7
BINDING SITE FOR RESIDUE NO3 A 151
A
NO3
151
Software
6
BINDING SITE FOR RESIDUE NO3 A 152
A
NO3
152
Software
8
BINDING SITE FOR RESIDUE NO3 A 153
A
NO3
153
Software
8
BINDING SITE FOR RESIDUE NO3 A 154
A
NO3
154
Software
7
BINDING SITE FOR RESIDUE NO3 A 155
A
NO3
155
Software
7
BINDING SITE FOR RESIDUE ACT A 201
A
ACT
201
Software
13
BINDING SITE FOR RESIDUE ACT A 203
A
ACT
203
Software
9
BINDING SITE FOR RESIDUE ACT A 204
A
ACT
204
Software
8
A
ARG
14
A
ARG
14
7
1_656
A
LYS
33
A
LYS
33
7
1_556
A
ASN
37
A
ASN
37
7
1_556
A
TRP
62
A
TRP
62
7
1_555
A
ARG
73
A
ARG
73
7
1_555
A
HOH
2280
K
HOH
7
1_656
A
HOH
2292
K
HOH
7
1_656
A
LYS
33
A
LYS
33
6
1_555
A
PHE
38
A
PHE
38
6
1_555
A
ARG
73
A
ARG
73
6
1_554
A
TRP
123
A
TRP
123
6
1_555
A
HOH
2077
K
HOH
6
1_555
A
HOH
2323
K
HOH
6
1_555
A
ARG
21
A
ARG
21
8
1_555
A
GLY
22
A
GLY
22
8
1_555
A
ASN
65
A
ASN
65
8
1_565
A
ASP
66
A
ASP
66
8
1_565
A
PRO
79
A
PRO
79
8
1_565
A
CYS
80
A
CYS
80
8
1_565
A
SER
81
A
SER
81
8
1_565
A
HOH
2078
K
HOH
8
1_455
A
TYR
23
A
TYR
23
8
1_555
A
ARG
45
A
ARG
45
8
1_565
A
GLY
104
A
GLY
104
8
1_555
A
MET
105
A
MET
105
8
1_555
A
ASN
106
A
ASN
106
8
1_555
A
TRP
111
A
TRP
111
8
1_555
A
HOH
2109
K
HOH
8
1_665
A
HOH
2124
K
HOH
8
1_565
A
ASN
65
A
ASN
65
7
1_555
A
ASN
74
A
ASN
74
7
1_555
A
ASN
77
A
ASN
77
7
1_555
A
ILE
78
A
ILE
78
7
1_555
A
PRO
79
A
PRO
79
7
1_555
A
ARG
112
A
ARG
112
7
1_445
A
LYS
116
A
LYS
116
7
1_445
A
ALA
11
A
ALA
11
7
1_555
A
ARG
14
A
ARG
14
7
1_555
A
HIS
15
A
HIS
15
7
1_555
A
ASP
87
A
ASP
87
7
1_555
A
ILE
88
A
ILE
88
7
1_555
A
HOH
2094
K
HOH
7
1_555
A
HOH
2113
K
HOH
7
1_555
A
TYR
20
A
TYR
20
13
1_555
A
ARG
21
A
ARG
21
13
1_555
A
ALA
110
A
ALA
110
13
1_455
A
ASN
113
A
ASN
113
13
1_455
A
ARG
114
A
ARG
114
13
1_455
A
ARG
128
A
ARG
128
13
1_556
A
HOH
2044
K
HOH
13
1_555
A
HOH
2078
K
HOH
13
1_455
A
HOH
2118
K
HOH
13
1_555
A
HOH
2123
K
HOH
13
1_555
A
HOH
2137
K
HOH
13
1_555
A
HOH
2333
K
HOH
13
1_555
A
HOH
2334
K
HOH
13
1_555
A
ILE
58
A
ILE
58
9
1_555
A
ASN
59
A
ASN
59
9
1_555
A
TRP
63
A
TRP
63
9
1_555
A
ALA
107
A
ALA
107
9
1_555
A
TRP
108
A
TRP
108
9
1_555
A
HOH
2085
K
HOH
9
1_555
A
HOH
2127
K
HOH
9
1_555
A
HOH
2179
K
HOH
9
1_555
A
HOH
2202
K
HOH
9
1_555
A
ASN
46
A
ASN
46
8
1_555
A
THR
47
A
THR
47
8
1_555
A
ASP
48
A
ASP
48
8
1_555
A
LYS
97
A
LYS
97
8
1_655
A
HOH
2027
K
HOH
8
1_555
A
HOH
2090
K
HOH
8
1_655
A
HOH
2185
K
HOH
8
1_656
A
HOH
2188
K
HOH
8
1_655
1
P 1