0.023294 0.013449 0.000000 0.000000 0.026898 0.000000 0.000000 0.000000 0.007844 0.000000 0.000000 0.000000 Gavira, J.A. Camara-Artigas, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.000 90.000 120.000 42.929 42.929 127.486 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C H2 O2 46.025 FORMIC ACID non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N O N 76 N O N 77 N H N 78 N H N 79 N N N 80 S C N 81 N C N 82 N O N 83 N C N 84 N C N 85 N C N 86 N O N 87 N N N 88 N O N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N N N 100 S C N 101 N C N 102 N O N 103 N C N 104 N C N 105 N C N 106 N O N 107 N O N 108 N O N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 N C N 120 N C N 121 N O N 122 N O N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N O N 129 N H N 130 N H N 131 N N N 132 S C N 133 N C N 134 N O N 135 S C N 136 N C N 137 N C N 138 N C N 139 N O N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N N N 154 S C N 155 N C N 156 N O N 157 N C N 158 N C N 159 N C N 160 N C N 161 N O N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N N N 176 S C N 177 N C N 178 N O N 179 N C N 180 N C N 181 N C N 182 N C N 183 N N N 184 N O N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N N N 201 S C N 202 N C N 203 N O N 204 N C N 205 N C N 206 N S N 207 N C N 208 N O N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N N N 221 S C N 222 N C N 223 N O N 224 N C Y 225 N C Y 226 N C Y 227 N C Y 228 N C Y 229 N C Y 230 N C N 231 N O N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N N N 244 S C N 245 N C N 246 N O N 247 N C N 248 N C N 249 N C N 250 N O N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C N 265 N O N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 R C N 279 N O N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C Y 296 N C Y 297 N C Y 298 N C Y 299 N N Y 300 N C Y 301 N C Y 302 N C Y 303 N C Y 304 N C N 305 N O N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N C Y 327 N C Y 328 N C N 329 N O N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N N N 343 S C N 344 N C N 345 N O N 346 N C N 347 N C N 348 N C N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N doub N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing Y 218 N doub Y 219 N sing Y 220 N sing N 221 N sing Y 222 N doub N 223 N sing Y 224 N doub N 225 N sing Y 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing Y 287 N doub Y 288 N sing Y 289 N sing N 290 N sing Y 291 N doub Y 292 N sing Y 293 N sing N 294 N sing Y 295 N sing Y 296 N doub N 297 N sing Y 298 N doub N 299 N sing Y 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub N 320 N sing Y 321 N doub N 322 N sing Y 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 Understanding the polymorphic behaviour of a mutant of the alpha-spectrin SH3 domain by means of two 1.1 A structures 2011 DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 65 1247 1252 10.1107/S0907444909038037 19966410 The effect of a proline residue on the rate of growth and the space group of alpha-spectrin SH3-domain crystals. 2009 10.2210/pdb3m0u/pdb pdb_00003m0u 100 1 CCD 2008-03-04 CCD ADSC_Q210 SINGLE WAVELENGTH M x-ray 1 0.97752 1.0 BM16 ESRF 0.97752 SYNCHROTRON ESRF BEAMLINE BM16 7187.138 Spectrin alpha chain, brain UNP residues 965 to 1025 R21D 1 man polymer 46.025 FORMIC ACID 1 syn non-polymer 18.015 water 42 nat water Spectrin, non-erythroid alpha chain, Fodrin alpha chain no no MDETGKELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD MDETGKELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n chicken sample SPTAN1, SPTA2 9031 Gallus gallus 562 Escherichia coli BL21(DE3) plasmid pET26 1 2.36 47.86 batch, under oil 6.5 2 M sodium formate, 0.1 M MES pH 6.5, batch, under oil, temperature 298K 298 database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Database references Derived calculations Data collection Refinement description 1 0 2011-01-19 1 1 2011-07-13 1 2 2021-10-13 1 3 2023-09-06 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id alpha-spectrin SH3 domain Crystal Structure of the triple mutant S19G-P20D-R21S of alpha spectrin SH3 domain alpha-spectrin SH3 domain R21A mutant alpha-spectrin SH3 domain R21G mutant alpha-spectrin SH3 domain R21D mutant at pH 4.0 alpha-spectrin SH3 domain R21D mutant at 5.0 alpha-spectrin SH3 domain R21D mutant at pH 6.0 alpha-spectrin SH3 domain R21D mutant at pH 7.0 alpha-spectrin SH3 domain R21D mutant at pH 9.0 RCSB Y RCSB 2010-03-03 REL REL FMT FORMIC ACID HOH water 1SHG PDB entry 1SHG PDB experimental model FMT 1 2 FMT FMT 63 A HOH 1 3 HOH HOH 64 A HOH 2 3 HOH HOH 65 A HOH 3 3 HOH HOH 66 A HOH 4 3 HOH HOH 67 A HOH 5 3 HOH HOH 68 A HOH 6 3 HOH HOH 69 A HOH 7 3 HOH HOH 70 A HOH 8 3 HOH HOH 71 A HOH 9 3 HOH HOH 72 A HOH 10 3 HOH HOH 73 A HOH 11 3 HOH HOH 74 A HOH 12 3 HOH HOH 75 A HOH 13 3 HOH HOH 76 A HOH 14 3 HOH HOH 77 A HOH 15 3 HOH HOH 78 A HOH 16 3 HOH HOH 79 A HOH 17 3 HOH HOH 80 A HOH 18 3 HOH HOH 81 A HOH 19 3 HOH HOH 82 A HOH 20 3 HOH HOH 83 A HOH 21 3 HOH HOH 84 A HOH 22 3 HOH HOH 85 A HOH 23 3 HOH HOH 86 A HOH 24 3 HOH HOH 87 A HOH 25 3 HOH HOH 88 A HOH 26 3 HOH HOH 89 A HOH 27 3 HOH HOH 90 A HOH 28 3 HOH HOH 91 A HOH 29 3 HOH HOH 92 A HOH 30 3 HOH HOH 93 A HOH 31 3 HOH HOH 94 A HOH 32 3 HOH HOH 95 A HOH 33 3 HOH HOH 96 A HOH 34 3 HOH HOH 97 A HOH 35 3 HOH HOH 98 A HOH 36 3 HOH HOH 99 A HOH 37 3 HOH HOH 100 A HOH 38 3 HOH HOH 101 A HOH 39 3 HOH HOH 102 A HOH 40 3 HOH HOH 103 A HOH 41 3 HOH HOH 104 A HOH 42 3 HOH HOH 105 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A GLY 5 n 5 GLY 5 A LYS 6 n 6 LYS 6 A GLU 7 n 7 GLU 7 A LEU 8 n 8 LEU 8 A VAL 9 n 9 VAL 9 A LEU 10 n 10 LEU 10 A ALA 11 n 11 ALA 11 A LEU 12 n 12 LEU 12 A TYR 13 n 13 TYR 13 A ASP 14 n 14 ASP 14 A TYR 15 n 15 TYR 15 A GLN 16 n 16 GLN 16 A GLU 17 n 17 GLU 17 A LYS 18 n 18 LYS 18 A SER 19 n 19 SER 19 A PRO 20 n 20 PRO 20 A ASP 21 n 21 ASP 21 A GLU 22 n 22 GLU 22 A VAL 23 n 23 VAL 23 A THR 24 n 24 THR 24 A MET 25 n 25 MET 25 A LYS 26 n 26 LYS 26 A LYS 27 n 27 LYS 27 A GLY 28 n 28 GLY 28 A ASP 29 n 29 ASP 29 A ILE 30 n 30 ILE 30 A LEU 31 n 31 LEU 31 A THR 32 n 32 THR 32 A LEU 33 n 33 LEU 33 A LEU 34 n 34 LEU 34 A ASN 35 n 35 ASN 35 A SER 36 n 36 SER 36 A THR 37 n 37 THR 37 A ASN 38 n 38 ASN 38 A LYS 39 n 39 LYS 39 A ASP 40 n 40 ASP 40 A TRP 41 n 41 TRP 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A VAL 44 n 44 VAL 44 A GLU 45 n 45 GLU 45 A VAL 46 n 46 VAL 46 A ASN 47 n 47 ASN 47 A ASP 48 n 48 ASP 48 A ARG 49 n 49 ARG 49 A GLN 50 n 50 GLN 50 A GLY 51 n 51 GLY 51 A PHE 52 n 52 PHE 52 A VAL 53 n 53 VAL 53 A PRO 54 n 54 PRO 54 A ALA 55 n 55 ALA 55 A ALA 56 n 56 ALA 56 A TYR 57 n 57 TYR 57 A VAL 58 n 58 VAL 58 A LYS 59 n 59 LYS 59 A LYS 60 n 60 LYS 60 A LEU 61 n 61 LEU 61 A ASP 62 n 62 ASP 62 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLY 51 A O GLY 51 A N VAL 44 A N VAL 44 A O LYS 43 A O LYS 43 A N LEU 34 A N LEU 34 A O LEU 31 A O LEU 31 A N VAL 9 A N VAL 9 A N LEU 10 A N LEU 10 A O LYS 59 A O LYS 59 1 A FMT 63 B FMT 1 A HOH 64 C HOH 1 A MET 1 A MET 1 1 Y 1 A ASP 2 A ASP 2 1 Y 1 A GLU 3 A GLU 3 1 Y 1 A THR 4 A THR 4 1 Y 1 A A C O2 FMT FMT 63 63 1.95 1_555 12_564 1 A ASN 47 52.11 -108.06 70.45 19.748 8.31 -0.100 -0.050 0.000 -0.100 0.000 0.160 0.969 0.966 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY 0.168 0.157 0.15776 0.158 1.100 20.000 1412 27739 26450 5.100 95.350 0.162 0.148 1.00 0.50 0.929 0.644 0.014 0.027 0.027 RANDOM 1 THROUGHOUT 0.00 0.00 MOLECULAR REPLACEMENT 0.028 0.027 0.800 0.800 1.400 PDB entry 1SHG MAXIMUM LIKELIHOOD MASK 1.100 20.000 42 518 3 0 473 0.022 0.022 491 1.979 1.987 665 5.454 5.000 59 47.403 26.364 22 10.323 15.000 93 21.605 15.000 1 0.151 0.200 73 0.014 0.021 368 3.978 1.500 297 6.051 2.000 479 7.941 3.000 194 11.822 4.500 186 4.540 3.000 491 22.595 3.000 42 10.812 3.000 482 0.318 0.308 1.128 84 1578 1662 20 79.410 10.780 1.100 37.190 3M0U 29341 27903 0.00 0.00 0.073 0.073 1 12.8 4.3 95.1 0.094 1.10 1.14 7.1 2330 0.094 1 2.3 81.9 data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other phasing Alexei Vaguine alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.005 data collection HKL-2000 data reduction HKL-2000 Crystal Structure of the R21D mutant of alpha-spectrin SH3 domain. Hexagonal crystal obtained in sodium formate at pH 6.5. 1 N N 2 N N 3 N N SIGNALING PROTEIN SH3-like barrel, Actin capping, Actin-binding, Calmodulin-binding, Cytoskeleton, Phosphoprotein, SH3 domain, SIGNALING PROTEIN SPTA2_CHICK UNP 1 965 P07751 DETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 965 1025 3M0U 2 62 P07751 A 1 2 62 1 expression tag MET 1 3M0U A P07751 UNP 1 1 ARG engineered mutation ASP 21 3M0U A P07751 UNP 984 21 5 anti-parallel anti-parallel anti-parallel anti-parallel A ARG 49 A ARG 49 A PRO 54 A PRO 54 A TRP 41 A TRP 41 A VAL 46 A VAL 46 A ILE 30 A ILE 30 A ASN 35 A ASN 35 A LEU 8 A LEU 8 A ALA 11 A ALA 11 A VAL 58 A VAL 58 A LEU 61 A LEU 61 BINDING SITE FOR RESIDUE FMT A 63 A FMT 63 Software 3 A LYS 59 A LYS 59 3 1_555 A LYS 59 A LYS 59 3 12_564 A LYS 60 A LYS 60 3 12_564 179 P 65 2 2