0.007954
0.000000
0.005489
0.000000
0.021479
0.000000
0.000000
0.000000
0.015578
0.00000
0.00000
0.00000
Vannini, A.
Beck, K.
Lipps, G.
Cramer, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
124.61
90.00
125.718
46.557
77.993
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
S
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
S
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
O
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
S
N
319
N
O
N
320
N
O
N
321
N
O
N
322
N
O
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
R
C
N
328
N
O
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
N
Y
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
N
378
N
O
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
N
396
N
C
N
397
N
C
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
sing
Y
343
N
doub
N
344
N
sing
Y
345
N
doub
N
346
N
sing
Y
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
38
6707
6718
10.1093/nar/gkq447
20511586
The archaeo-eukaryotic primase of plasmid pRN1 requires a helix bundle domain for faithful primer synthesis
2010
10.2210/pdb3m1m/pdb
pdb_00003m1m
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.93400
1.0
ID14-1
ESRF
0.93400
SYNCHROTRON
ESRF BEAMLINE ID14-1
38967.770
ORF904
primase-polymerase domain, residues 36-370
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
123
nat
water
DNA primase polymerase
no
no
SSNFSSERIRYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQKGLVILDFESK
EKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDK
CPWKEQNYTTCYTLYNELKEISKVDLKSLLRFLAEKGKRLGITLSKTAKEWLEGKKEEEDTVVEFEELRKELVKRDSGKP
VEKIKEEICTKSPPKLIKEIICENKTYADVNIDRSRGDWHVILYLMKHGVTDPDKILELLPRDSKAKENEKWNTQKYFVI
TLSKAWSVVKKYLEA
SSNFSSERIRYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQKGLVILDFESK
EKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDK
CPWKEQNYTTCYTLYNELKEISKVDLKSLLRFLAEKGKRLGITLSKTAKEWLEGKKEEEDTVVEFEELRKELVKRDSGKP
VEKIKEEICTKSPPKLIKEIICENKTYADVNIDRSRGDWHVILYLMKHGVTDPDKILELLPRDSKAKENEKWNTQKYFVI
TLSKAWSVVKKYLEA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
43080
Sulfolobus islandicus
511693
Escherichia coli
BL21
plasmid
Pet21b
1
2.41
48.97
VAPOR DIFFUSION, HANGING DROP
8.5
0.1M Tris-HCl pH 8.5, 30-35% PEG 4000, 200mM lithium sulphate, 2mM Tris-2-carboxyethyl-phosphine, VAPOR DIFFUSION, HANGING DROP
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-06-16
1
1
2011-07-13
1
2
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2010-03-05
REL
REL
ZN
ZINC ION
GOL
GLYCEROL
SO4
SULFATE ION
HOH
water
1RO2
PDB ENTRY 1RO2
PDB
experimental model
ZN
1
2
ZN
ZN
1
A
GOL
371
3
GOL
GOL
371
A
SO4
372
4
SO4
SO4
372
A
HOH
2
5
HOH
HOH
2
A
HOH
3
5
HOH
HOH
3
A
HOH
4
5
HOH
HOH
4
A
HOH
5
5
HOH
HOH
5
A
HOH
6
5
HOH
HOH
6
A
HOH
7
5
HOH
HOH
7
A
HOH
8
5
HOH
HOH
8
A
HOH
9
5
HOH
HOH
9
A
HOH
10
5
HOH
HOH
10
A
HOH
11
5
HOH
HOH
11
A
HOH
12
5
HOH
HOH
12
A
HOH
13
5
HOH
HOH
13
A
HOH
14
5
HOH
HOH
14
A
HOH
15
5
HOH
HOH
15
A
HOH
16
5
HOH
HOH
16
A
HOH
17
5
HOH
HOH
17
A
HOH
18
5
HOH
HOH
18
A
HOH
19
5
HOH
HOH
19
A
HOH
20
5
HOH
HOH
20
A
HOH
21
5
HOH
HOH
21
A
HOH
22
5
HOH
HOH
22
A
HOH
23
5
HOH
HOH
23
A
HOH
24
5
HOH
HOH
24
A
HOH
25
5
HOH
HOH
25
A
HOH
26
5
HOH
HOH
26
A
HOH
27
5
HOH
HOH
27
A
HOH
28
5
HOH
HOH
28
A
HOH
29
5
HOH
HOH
29
A
HOH
30
5
HOH
HOH
30
A
HOH
31
5
HOH
HOH
31
A
HOH
33
5
HOH
HOH
33
A
HOH
34
5
HOH
HOH
34
A
HOH
35
5
HOH
HOH
35
A
HOH
373
5
HOH
HOH
373
A
HOH
374
5
HOH
HOH
374
A
HOH
375
5
HOH
HOH
375
A
HOH
376
5
HOH
HOH
376
A
HOH
377
5
HOH
HOH
377
A
HOH
378
5
HOH
HOH
378
A
HOH
379
5
HOH
HOH
379
A
HOH
380
5
HOH
HOH
380
A
HOH
381
5
HOH
HOH
381
A
HOH
382
5
HOH
HOH
382
A
HOH
383
5
HOH
HOH
383
A
HOH
384
5
HOH
HOH
384
A
HOH
385
5
HOH
HOH
385
A
HOH
386
5
HOH
HOH
386
A
HOH
387
5
HOH
HOH
387
A
HOH
388
5
HOH
HOH
388
A
HOH
389
5
HOH
HOH
389
A
HOH
390
5
HOH
HOH
390
A
HOH
391
5
HOH
HOH
391
A
HOH
392
5
HOH
HOH
392
A
HOH
393
5
HOH
HOH
393
A
HOH
394
5
HOH
HOH
394
A
HOH
395
5
HOH
HOH
395
A
HOH
396
5
HOH
HOH
396
A
HOH
397
5
HOH
HOH
397
A
HOH
398
5
HOH
HOH
398
A
HOH
399
5
HOH
HOH
399
A
HOH
400
5
HOH
HOH
400
A
HOH
401
5
HOH
HOH
401
A
HOH
402
5
HOH
HOH
402
A
HOH
403
5
HOH
HOH
403
A
HOH
404
5
HOH
HOH
404
A
HOH
405
5
HOH
HOH
405
A
HOH
406
5
HOH
HOH
406
A
HOH
407
5
HOH
HOH
407
A
HOH
408
5
HOH
HOH
408
A
HOH
409
5
HOH
HOH
409
A
HOH
410
5
HOH
HOH
410
A
HOH
411
5
HOH
HOH
411
A
HOH
412
5
HOH
HOH
412
A
HOH
413
5
HOH
HOH
413
A
HOH
414
5
HOH
HOH
414
A
HOH
415
5
HOH
HOH
415
A
HOH
416
5
HOH
HOH
416
A
HOH
417
5
HOH
HOH
417
A
HOH
418
5
HOH
HOH
418
A
HOH
419
5
HOH
HOH
419
A
HOH
420
5
HOH
HOH
420
A
HOH
421
5
HOH
HOH
421
A
HOH
422
5
HOH
HOH
422
A
HOH
423
5
HOH
HOH
423
A
HOH
424
5
HOH
HOH
424
A
HOH
425
5
HOH
HOH
425
A
HOH
426
5
HOH
HOH
426
A
HOH
427
5
HOH
HOH
427
A
HOH
428
5
HOH
HOH
428
A
HOH
429
5
HOH
HOH
429
A
HOH
430
5
HOH
HOH
430
A
HOH
431
5
HOH
HOH
431
A
HOH
432
5
HOH
HOH
432
A
HOH
433
5
HOH
HOH
433
A
HOH
434
5
HOH
HOH
434
A
HOH
435
5
HOH
HOH
435
A
HOH
436
5
HOH
HOH
436
A
HOH
437
5
HOH
HOH
437
A
HOH
438
5
HOH
HOH
438
A
HOH
439
5
HOH
HOH
439
A
HOH
440
5
HOH
HOH
440
A
HOH
441
5
HOH
HOH
441
A
HOH
442
5
HOH
HOH
442
A
HOH
443
5
HOH
HOH
443
A
HOH
444
5
HOH
HOH
444
A
HOH
445
5
HOH
HOH
445
A
HOH
446
5
HOH
HOH
446
A
HOH
447
5
HOH
HOH
447
A
HOH
448
5
HOH
HOH
448
A
HOH
449
5
HOH
HOH
449
A
HOH
450
5
HOH
HOH
450
A
HOH
451
5
HOH
HOH
451
A
HOH
452
5
HOH
HOH
452
A
HOH
453
5
HOH
HOH
453
A
HOH
454
5
HOH
HOH
454
A
HOH
455
5
HOH
HOH
455
A
HOH
456
5
HOH
HOH
456
A
HOH
457
5
HOH
HOH
457
A
HOH
458
5
HOH
HOH
458
A
HOH
459
5
HOH
HOH
459
A
HOH
460
5
HOH
HOH
460
A
HOH
461
5
HOH
HOH
461
A
HOH
462
5
HOH
HOH
462
A
n
1
36
A
n
2
37
A
n
3
38
A
n
4
39
A
SER
40
n
5
SER
40
A
SER
41
n
6
SER
41
A
GLU
42
n
7
GLU
42
A
ARG
43
n
8
ARG
43
A
ILE
44
n
9
ILE
44
A
ARG
45
n
10
ARG
45
A
TYR
46
n
11
TYR
46
A
ALA
47
n
12
ALA
47
A
LYS
48
n
13
LYS
48
A
TRP
49
n
14
TRP
49
A
PHE
50
n
15
PHE
50
A
LEU
51
n
16
LEU
51
A
GLU
52
n
17
GLU
52
A
HIS
53
n
18
HIS
53
A
GLY
54
n
19
GLY
54
A
PHE
55
n
20
PHE
55
A
ASN
56
n
21
ASN
56
A
ILE
57
n
22
ILE
57
A
ILE
58
n
23
ILE
58
A
PRO
59
n
24
PRO
59
A
ILE
60
n
25
ILE
60
A
ASP
61
n
26
ASP
61
A
PRO
62
n
27
PRO
62
A
GLU
63
n
28
GLU
63
A
SER
64
n
29
SER
64
A
LYS
65
n
30
LYS
65
A
LYS
66
n
31
LYS
66
A
PRO
67
n
32
PRO
67
A
VAL
68
n
33
VAL
68
A
LEU
69
n
34
LEU
69
A
LYS
70
n
35
LYS
70
A
GLU
71
n
36
GLU
71
A
TRP
72
n
37
TRP
72
A
GLN
73
n
38
GLN
73
A
LYS
74
n
39
LYS
74
A
TYR
75
n
40
TYR
75
A
SER
76
n
41
SER
76
A
HIS
77
n
42
HIS
77
A
GLU
78
n
43
GLU
78
A
MET
79
n
44
MET
79
A
PRO
80
n
45
PRO
80
A
SER
81
n
46
SER
81
A
ASP
82
n
47
ASP
82
A
GLU
83
n
48
GLU
83
A
GLU
84
n
49
GLU
84
A
LYS
85
n
50
LYS
85
A
GLN
86
n
51
GLN
86
A
ARG
87
n
52
ARG
87
A
PHE
88
n
53
PHE
88
A
LEU
89
n
54
LEU
89
A
LYS
90
n
55
LYS
90
A
MET
91
n
56
MET
91
A
ILE
92
n
57
ILE
92
A
GLU
93
n
58
GLU
93
A
GLU
94
n
59
GLU
94
A
GLY
95
n
60
GLY
95
A
TYR
96
n
61
TYR
96
A
ASN
97
n
62
ASN
97
A
TYR
98
n
63
TYR
98
A
ALA
99
n
64
ALA
99
A
ILE
100
n
65
ILE
100
A
PRO
101
n
66
PRO
101
A
GLY
102
n
67
GLY
102
A
GLY
103
n
68
GLY
103
A
GLN
104
n
69
GLN
104
A
LYS
105
n
70
LYS
105
A
GLY
106
n
71
GLY
106
A
LEU
107
n
72
LEU
107
A
VAL
108
n
73
VAL
108
A
ILE
109
n
74
ILE
109
A
LEU
110
n
75
LEU
110
A
ASP
111
n
76
ASP
111
A
PHE
112
n
77
PHE
112
A
GLU
113
n
78
GLU
113
A
SER
114
n
79
SER
114
A
LYS
115
n
80
LYS
115
A
GLU
116
n
81
GLU
116
A
LYS
117
n
82
LYS
117
A
LEU
118
n
83
LEU
118
A
LYS
119
n
84
LYS
119
A
ALA
120
n
85
ALA
120
A
TRP
121
n
86
TRP
121
A
ILE
122
n
87
ILE
122
A
GLY
123
n
88
GLY
123
A
GLU
124
n
89
GLU
124
A
SER
125
n
90
SER
125
A
ALA
126
n
91
ALA
126
A
LEU
127
n
92
LEU
127
A
GLU
128
n
93
GLU
128
A
GLU
129
n
94
GLU
129
A
LEU
130
n
95
LEU
130
A
CYS
131
n
96
CYS
131
A
ARG
132
n
97
ARG
132
A
LYS
133
n
98
LYS
133
A
THR
134
n
99
THR
134
A
LEU
135
n
100
LEU
135
A
CYS
136
n
101
CYS
136
A
THR
137
n
102
THR
137
A
ASN
138
n
103
ASN
138
A
THR
139
n
104
THR
139
A
VAL
140
n
105
VAL
140
A
HIS
141
n
106
HIS
141
A
GLY
142
n
107
GLY
142
A
GLY
143
n
108
GLY
143
A
ILE
144
n
109
ILE
144
A
HIS
145
n
110
HIS
145
A
ILE
146
n
111
ILE
146
A
TYR
147
n
112
TYR
147
A
VAL
148
n
113
VAL
148
A
LEU
149
n
114
LEU
149
A
SER
150
n
115
SER
150
A
ASN
151
n
116
ASN
151
A
ASP
152
n
117
ASP
152
A
ILE
153
n
118
ILE
153
A
PRO
154
n
119
PRO
154
A
PRO
155
n
120
PRO
155
A
HIS
156
n
121
HIS
156
A
LYS
157
n
122
LYS
157
A
ILE
158
n
123
ILE
158
A
ASN
159
n
124
ASN
159
A
PRO
160
n
125
PRO
160
A
LEU
161
n
126
LEU
161
A
PHE
162
n
127
PHE
162
A
GLU
163
n
128
GLU
163
A
GLU
164
n
129
GLU
164
A
ASN
165
n
130
ASN
165
A
GLY
166
n
131
GLY
166
A
LYS
167
n
132
LYS
167
A
GLY
168
n
133
GLY
168
A
ILE
169
n
134
ILE
169
A
ILE
170
n
135
ILE
170
A
ASP
171
n
136
ASP
171
A
LEU
172
n
137
LEU
172
A
GLN
173
n
138
GLN
173
A
SER
174
n
139
SER
174
A
TYR
175
n
140
TYR
175
A
ASN
176
n
141
ASN
176
A
SER
177
n
142
SER
177
A
TYR
178
n
143
TYR
178
A
VAL
179
n
144
VAL
179
A
LEU
180
n
145
LEU
180
A
GLY
181
n
146
GLY
181
A
LEU
182
n
147
LEU
182
A
GLY
183
n
148
GLY
183
A
SER
184
n
149
SER
184
A
CYS
185
n
150
CYS
185
A
VAL
186
n
151
VAL
186
A
ASN
187
n
152
ASN
187
A
HIS
188
n
153
HIS
188
A
LEU
189
n
154
LEU
189
A
HIS
190
n
155
HIS
190
A
CYS
191
n
156
CYS
191
A
THR
192
n
157
THR
192
A
THR
193
n
158
THR
193
A
ASP
194
n
159
ASP
194
A
LYS
195
n
160
LYS
195
A
CYS
196
n
161
CYS
196
A
PRO
197
n
162
PRO
197
A
TRP
198
n
163
TRP
198
A
LYS
199
n
164
LYS
199
A
GLU
200
n
165
GLU
200
A
GLN
201
n
166
GLN
201
A
ASN
202
n
167
ASN
202
A
TYR
203
n
168
TYR
203
A
THR
204
n
169
THR
204
A
THR
205
n
170
THR
205
A
CYS
206
n
171
CYS
206
A
TYR
207
n
172
TYR
207
A
THR
208
n
173
THR
208
A
LEU
209
n
174
LEU
209
A
TYR
210
n
175
TYR
210
A
ASN
211
n
176
ASN
211
A
GLU
212
n
177
GLU
212
A
LEU
213
n
178
LEU
213
A
LYS
214
n
179
LYS
214
A
GLU
215
n
180
GLU
215
A
ILE
216
n
181
ILE
216
A
SER
217
n
182
SER
217
A
LYS
218
n
183
LYS
218
A
VAL
219
n
184
VAL
219
A
ASP
220
n
185
ASP
220
A
LEU
221
n
186
LEU
221
A
LYS
222
n
187
LYS
222
A
SER
223
n
188
SER
223
A
LEU
224
n
189
LEU
224
A
LEU
225
n
190
LEU
225
A
ARG
226
n
191
ARG
226
A
PHE
227
n
192
PHE
227
A
LEU
228
n
193
LEU
228
A
ALA
229
n
194
ALA
229
A
GLU
230
n
195
GLU
230
A
LYS
231
n
196
LYS
231
A
GLY
232
n
197
GLY
232
A
LYS
233
n
198
LYS
233
A
ARG
234
n
199
ARG
234
A
LEU
235
n
200
LEU
235
A
GLY
236
n
201
GLY
236
A
ILE
237
n
202
ILE
237
A
THR
238
n
203
THR
238
A
LEU
239
n
204
LEU
239
A
SER
240
n
205
SER
240
A
LYS
241
n
206
LYS
241
A
THR
242
n
207
THR
242
A
ALA
243
n
208
ALA
243
A
LYS
244
n
209
LYS
244
A
GLU
245
n
210
GLU
245
A
TRP
246
n
211
TRP
246
A
LEU
247
n
212
LEU
247
A
GLU
248
n
213
GLU
248
A
GLY
249
n
214
GLY
249
A
n
215
250
A
n
216
251
A
n
217
252
A
n
218
253
A
n
219
254
A
n
220
255
A
n
221
256
A
n
222
257
A
n
223
258
A
n
224
259
A
n
225
260
A
GLU
261
n
226
GLU
261
A
GLU
262
n
227
GLU
262
A
LEU
263
n
228
LEU
263
A
ARG
264
n
229
ARG
264
A
LYS
265
n
230
LYS
265
A
GLU
266
n
231
GLU
266
A
LEU
267
n
232
LEU
267
A
VAL
268
n
233
VAL
268
A
LYS
269
n
234
LYS
269
A
ARG
270
n
235
ARG
270
A
ASP
271
n
236
ASP
271
A
SER
272
n
237
SER
272
A
GLY
273
n
238
GLY
273
A
LYS
274
n
239
LYS
274
A
PRO
275
n
240
PRO
275
A
VAL
276
n
241
VAL
276
A
GLU
277
n
242
GLU
277
A
LYS
278
n
243
LYS
278
A
ILE
279
n
244
ILE
279
A
LYS
280
n
245
LYS
280
A
GLU
281
n
246
GLU
281
A
GLU
282
n
247
GLU
282
A
ILE
283
n
248
ILE
283
A
CYS
284
n
249
CYS
284
A
THR
285
n
250
THR
285
A
LYS
286
n
251
LYS
286
A
SER
287
n
252
SER
287
A
PRO
288
n
253
PRO
288
A
PRO
289
n
254
PRO
289
A
LYS
290
n
255
LYS
290
A
LEU
291
n
256
LEU
291
A
ILE
292
n
257
ILE
292
A
LYS
293
n
258
LYS
293
A
GLU
294
n
259
GLU
294
A
ILE
295
n
260
ILE
295
A
ILE
296
n
261
ILE
296
A
CYS
297
n
262
CYS
297
A
GLU
298
n
263
GLU
298
A
ASN
299
n
264
ASN
299
A
LYS
300
n
265
LYS
300
A
THR
301
n
266
THR
301
A
TYR
302
n
267
TYR
302
A
ALA
303
n
268
ALA
303
A
ASP
304
n
269
ASP
304
A
VAL
305
n
270
VAL
305
A
ASN
306
n
271
ASN
306
A
ILE
307
n
272
ILE
307
A
ASP
308
n
273
ASP
308
A
ARG
309
n
274
ARG
309
A
SER
310
n
275
SER
310
A
ARG
311
n
276
ARG
311
A
GLY
312
n
277
GLY
312
A
ASP
313
n
278
ASP
313
A
TRP
314
n
279
TRP
314
A
HIS
315
n
280
HIS
315
A
VAL
316
n
281
VAL
316
A
ILE
317
n
282
ILE
317
A
LEU
318
n
283
LEU
318
A
TYR
319
n
284
TYR
319
A
LEU
320
n
285
LEU
320
A
MET
321
n
286
MET
321
A
LYS
322
n
287
LYS
322
A
HIS
323
n
288
HIS
323
A
GLY
324
n
289
GLY
324
A
VAL
325
n
290
VAL
325
A
THR
326
n
291
THR
326
A
ASP
327
n
292
ASP
327
A
PRO
328
n
293
PRO
328
A
ASP
329
n
294
ASP
329
A
LYS
330
n
295
LYS
330
A
ILE
331
n
296
ILE
331
A
LEU
332
n
297
LEU
332
A
GLU
333
n
298
GLU
333
A
LEU
334
n
299
LEU
334
A
LEU
335
n
300
LEU
335
A
PRO
336
n
301
PRO
336
A
ARG
337
n
302
ARG
337
A
ASP
338
n
303
ASP
338
A
SER
339
n
304
SER
339
A
LYS
340
n
305
LYS
340
A
ALA
341
n
306
ALA
341
A
LYS
342
n
307
LYS
342
A
GLU
343
n
308
GLU
343
A
ASN
344
n
309
ASN
344
A
GLU
345
n
310
GLU
345
A
LYS
346
n
311
LYS
346
A
TRP
347
n
312
TRP
347
A
ASN
348
n
313
ASN
348
A
THR
349
n
314
THR
349
A
GLN
350
n
315
GLN
350
A
LYS
351
n
316
LYS
351
A
TYR
352
n
317
TYR
352
A
PHE
353
n
318
PHE
353
A
VAL
354
n
319
VAL
354
A
ILE
355
n
320
ILE
355
A
THR
356
n
321
THR
356
A
LEU
357
n
322
LEU
357
A
SER
358
n
323
SER
358
A
LYS
359
n
324
LYS
359
A
ALA
360
n
325
ALA
360
A
TRP
361
n
326
TRP
361
A
SER
362
n
327
SER
362
A
VAL
363
n
328
VAL
363
A
VAL
364
n
329
VAL
364
A
LYS
365
n
330
LYS
365
A
LYS
366
n
331
LYS
366
A
TYR
367
n
332
TYR
367
A
LEU
368
n
333
LEU
368
A
GLU
369
n
334
GLU
369
A
ALA
370
n
335
ALA
370
A
0.4170
-0.2719
0.0519
0.5303
0.1648
0.3689
0.0310
0.0284
0.0209
-0.0337
-0.0602
-0.0069
-0.0062
-0.0443
0.0292
-0.0250
-0.0063
0.0044
-0.0175
0.0050
-0.0112
refined
20.2770
-22.9210
-6.4660
X-RAY DIFFRACTION
1.5390
-0.5829
-0.0201
1.7490
-0.5340
0.9055
0.0996
0.0305
-0.0363
-0.0591
0.0360
-0.1711
-0.0488
-0.1993
-0.1355
-0.0490
0.0004
0.0039
0.0471
-0.0373
-0.0703
refined
-0.7520
-24.1420
-27.2480
X-RAY DIFFRACTION
A
40
A
249
X-RAY DIFFRACTION
1
A
261
A
370
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
1
monomeric
A
HIS
141
A
NE2
HIS
106
1_555
A
ZN
1
B
ZN
ZN
1_555
A
HIS
188
A
ND1
HIS
153
1_555
102.9
A
HIS
141
A
NE2
HIS
106
1_555
A
ZN
1
B
ZN
ZN
1_555
A
CYS
191
A
SG
CYS
156
1_555
112.2
A
HIS
188
A
ND1
HIS
153
1_555
A
ZN
1
B
ZN
ZN
1_555
A
CYS
191
A
SG
CYS
156
1_555
110.2
A
HIS
141
A
NE2
HIS
106
1_555
A
ZN
1
B
ZN
ZN
1_555
A
CYS
196
A
SG
CYS
161
1_555
104.8
A
HIS
188
A
ND1
HIS
153
1_555
A
ZN
1
B
ZN
ZN
1_555
A
CYS
196
A
SG
CYS
161
1_555
110.9
A
CYS
191
A
SG
CYS
156
1_555
A
ZN
1
B
ZN
ZN
1_555
A
CYS
196
A
SG
CYS
161
1_555
115.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
60
A
N
ILE
25
A
O
ASN
97
A
O
ASN
62
A
N
ILE
100
A
N
ILE
65
A
O
VAL
179
A
O
VAL
144
A
O
THR
208
A
O
THR
173
A
N
ASN
138
A
N
ASN
103
A
N
THR
137
A
N
THR
102
A
O
HIS
145
A
O
HIS
110
A
O
ILE
146
A
O
ILE
111
A
N
LEU
110
A
N
LEU
75
A
N
ILE
109
A
N
ILE
74
A
O
GLN
173
A
O
GLN
138
A
O
LEU
172
A
O
LEU
137
A
N
ILE
158
A
N
ILE
123
A
N
GLU
163
A
N
GLU
128
A
O
THR
238
A
O
THR
203
A
N
VAL
186
A
N
VAL
151
A
O
THR
205
A
O
THR
170
1
A
SER
36
A
SER
1
1
Y
1
A
SER
37
A
SER
2
1
Y
1
A
ASN
38
A
ASN
3
1
Y
1
A
PHE
39
A
PHE
4
1
Y
1
A
LYS
250
A
LYS
215
1
Y
1
A
LYS
251
A
LYS
216
1
Y
1
A
GLU
252
A
GLU
217
1
Y
1
A
GLU
253
A
GLU
218
1
Y
1
A
GLU
254
A
GLU
219
1
Y
1
A
ASP
255
A
ASP
220
1
Y
1
A
THR
256
A
THR
221
1
Y
1
A
VAL
257
A
VAL
222
1
Y
1
A
VAL
258
A
VAL
223
1
Y
1
A
GLU
259
A
GLU
224
1
Y
1
A
PHE
260
A
PHE
225
1
Y
1
A
A
O
O
HOH
HOH
426
455
1.81
1
A
A
O
O
HOH
HOH
419
461
2.13
1
A
A
OH
OE1
TYR
GLU
75
84
2.13
1
A
A
O
O
HOH
HOH
377
432
2.19
1
A
GLU
71
-110.00
64.49
1
A
HIS
77
-147.38
-17.79
1
A
LYS
105
57.76
16.73
1
A
SER
174
-121.95
-139.89
1
A
ASN
211
-136.49
-85.62
1
A
GLU
248
-118.33
72.14
1
A
LYS
342
-133.66
-32.77
67.60
27.222
10.14
-0.27
0.00
0.16
0.70
0.00
-0.26
0.945
0.915
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.25074
0.20408
0.20644
1.85
50.00
1541
28819
5.1
94.88
1.00
0.50
7.217
0.113
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.154
0.148
0.80
0.80
1.20
PDB ENTRY 1RO2
MAXIMUM LIKELIHOOD
MASK
1.85
50.00
123
2751
12
0
2616
0.017
0.022
2686
1.698
1.980
3620
6.354
5.000
318
38.040
24.872
117
18.830
15.000
528
11.957
15.000
11
0.133
0.200
391
0.008
0.021
1958
0.968
1.500
1596
1.846
2.000
2591
3.047
3.000
1090
4.949
4.500
1029
0.343
0.284
1.898
99
1637
20
74.38
1.85
50.00
3M1M
30362
1
537575
refinement
REFMAC
5.4.0067
Crystal structure of the primase-polymerase from Sulfolobus islandicus
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
SER
40
A
SER
5
HELX_P
A
HIS
53
A
HIS
18
1
1
14
A
GLU
71
A
GLU
36
HELX_P
A
HIS
77
A
HIS
42
5
2
7
A
SER
81
A
SER
46
HELX_P
A
GLU
94
A
GLU
59
1
3
14
A
GLY
103
A
GLY
68
HELX_P
A
LYS
105
A
LYS
70
5
4
3
A
SER
114
A
SER
79
HELX_P
A
GLY
123
A
GLY
88
1
5
10
A
GLY
123
A
GLY
88
HELX_P
A
THR
134
A
THR
99
1
6
12
A
LEU
189
A
LEU
154
HELX_P
A
CYS
191
A
CYS
156
5
7
3
A
ASP
220
A
ASP
185
HELX_P
A
LYS
233
A
LYS
198
1
8
14
A
SER
240
A
SER
205
HELX_P
A
GLU
248
A
GLU
213
1
9
9
A
GLU
261
A
GLU
226
HELX_P
A
ASP
271
A
ASP
236
1
10
11
A
PRO
275
A
PRO
240
HELX_P
A
THR
285
A
THR
250
1
11
11
A
PRO
289
A
PRO
254
HELX_P
A
CYS
297
A
CYS
262
1
12
9
A
ASP
308
A
ASP
273
HELX_P
A
HIS
323
A
HIS
288
1
13
16
A
ASP
327
A
ASP
292
HELX_P
A
LEU
335
A
LEU
300
1
14
9
A
GLU
345
A
GLU
310
HELX_P
A
GLU
369
A
GLU
334
1
15
25
disulf
2.035
A
CYS
185
A
SG
CYS
150
1_555
A
CYS
206
A
SG
CYS
171
1_555
disulf
2.049
A
CYS
284
A
SG
CYS
249
1_555
A
CYS
297
A
SG
CYS
262
1_555
metalc
2.109
A
ZN
1
B
ZN
ZN
1_555
A
HIS
141
A
NE2
HIS
106
1_555
metalc
2.102
A
ZN
1
B
ZN
ZN
1_555
A
HIS
188
A
ND1
HIS
153
1_555
metalc
2.412
A
ZN
1
B
ZN
ZN
1_555
A
CYS
191
A
SG
CYS
156
1_555
metalc
2.192
A
ZN
1
B
ZN
ZN
1_555
A
CYS
196
A
SG
CYS
161
1_555
REPLICATION
primase, polymerase, Replication
A
ASN
159
A
ASN
124
1
A
PRO
160
A
PRO
125
5.01
A
SER
272
A
SER
237
1
A
GLY
273
A
GLY
238
-21.82
Q54324_SULIS
UNP
1
36
Q54324
SSNFSSERIRYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQKGLVILDFESK
EKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDK
CPWKEQNYTTCYTLYNELKEISKVDLKSLLRFLAEKGKRLGITLSKTAKEWLEGKKEEEDTVVEFEELRKELVKRDSGKP
VEKIKEEICTKSPPKLIKEIICENKTYADVNIDRSRGDWHVILYLMKHGVTDPDKILELLPRDSKAKENEKWNTQKYFVI
TLSKAWSVVKKYLEA
36
370
3M1M
36
370
Q54324
A
1
1
335
3
7
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
58
A
ILE
23
A
ILE
60
A
ILE
25
A
ASN
97
A
ASN
62
A
PRO
101
A
PRO
66
A
TYR
178
A
TYR
143
A
LEU
180
A
LEU
145
A
THR
208
A
THR
173
A
LEU
209
A
LEU
174
A
CYS
136
A
CYS
101
A
ASN
138
A
ASN
103
A
ILE
144
A
ILE
109
A
LEU
149
A
LEU
114
A
LEU
107
A
LEU
72
A
PHE
112
A
PHE
77
A
LYS
167
A
LYS
132
A
GLN
173
A
GLN
138
A
ILE
158
A
ILE
123
A
GLU
164
A
GLU
129
A
ILE
237
A
ILE
202
A
LEU
239
A
LEU
204
A
CYS
185
A
CYS
150
A
ASN
187
A
ASN
152
A
THR
204
A
THR
169
A
CYS
206
A
CYS
171
BINDING SITE FOR RESIDUE ZN A 1
A
ZN
1
Software
4
BINDING SITE FOR RESIDUE GOL A 371
A
GOL
371
Software
3
BINDING SITE FOR RESIDUE SO4 A 372
A
SO4
372
Software
8
A
HIS
141
A
HIS
106
4
1_555
A
HIS
188
A
HIS
153
4
1_555
A
CYS
191
A
CYS
156
4
1_555
A
CYS
196
A
CYS
161
4
1_555
A
GLY
123
A
GLY
88
3
1_555
A
GLU
124
A
GLU
89
3
1_555
A
HOH
406
E
HOH
3
1_555
A
HOH
28
E
HOH
8
1_555
A
THR
139
A
THR
104
8
1_555
A
VAL
140
A
VAL
105
8
1_555
A
HIS
141
A
HIS
106
8
1_555
A
TYR
207
A
TYR
172
8
1_555
A
HOH
428
E
HOH
8
1_555
A
HOH
429
E
HOH
8
1_555
A
HOH
436
E
HOH
8
1_555
5
C 1 2 1