0.007954 0.000000 0.005489 0.000000 0.021479 0.000000 0.000000 0.000000 0.015578 0.00000 0.00000 0.00000 Vannini, A. Beck, K. Lipps, G. Cramer, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 124.61 90.00 125.718 46.557 77.993 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N C N 138 N O N 139 N C N 140 N O N 141 N C N 142 N O N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 S C N 153 N C N 154 N O N 155 N C Y 156 N C Y 157 N N Y 158 N C Y 159 N C Y 160 N N N 161 N O N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N O N 173 N H N 174 N H N 175 N N N 176 S C N 177 N C N 178 N O N 179 S C N 180 N C N 181 N C N 182 N C N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N N N 198 S C N 199 N C N 200 N O N 201 N C N 202 N C N 203 N C N 204 N C N 205 N O N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N N N 220 S C N 221 N C N 222 N O N 223 N C N 224 N C N 225 N C N 226 N C N 227 N N N 228 N O N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C N 249 N C N 250 N S N 251 N C N 252 N O N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C Y 269 N C Y 270 N C Y 271 N C Y 272 N C Y 273 N C Y 274 N C N 275 N O N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N C N 293 N C N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C N 309 N O N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N S N 319 N O N 320 N O N 321 N O N 322 N O N 323 N N N 324 S C N 325 N C N 326 N O N 327 R C N 328 N O N 329 N C N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N N Y 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C N 354 N O N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N N N 368 S C N 369 N C N 370 N O N 371 N C Y 372 N C Y 373 N C Y 374 N C Y 375 N C Y 376 N C Y 377 N C N 378 N O N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N N N 392 S C N 393 N C N 394 N O N 395 N C N 396 N C N 397 N C N 398 N O N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing Y 153 N sing Y 154 N doub Y 155 N doub N 156 N sing Y 157 N sing N 158 N sing Y 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing Y 261 N doub Y 262 N sing Y 263 N sing N 264 N sing Y 265 N doub N 266 N sing Y 267 N doub N 268 N sing Y 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N doub N 330 N sing N 331 N sing N 332 N sing N 333 N sing Y 334 N doub Y 335 N sing Y 336 N sing N 337 N sing Y 338 N doub Y 339 N sing Y 340 N sing N 341 N sing Y 342 N sing Y 343 N doub N 344 N sing Y 345 N doub N 346 N sing Y 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing Y 362 N doub Y 363 N sing Y 364 N sing N 365 N sing Y 366 N doub N 367 N sing Y 368 N doub N 369 N sing Y 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N doub N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 38 6707 6718 10.1093/nar/gkq447 20511586 The archaeo-eukaryotic primase of plasmid pRN1 requires a helix bundle domain for faithful primer synthesis 2010 10.2210/pdb3m1m/pdb pdb_00003m1m 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.93400 1.0 ID14-1 ESRF 0.93400 SYNCHROTRON ESRF BEAMLINE ID14-1 38967.770 ORF904 primase-polymerase domain, residues 36-370 1 man polymer 65.409 ZINC ION 1 syn non-polymer 92.094 GLYCEROL 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 123 nat water DNA primase polymerase no no SSNFSSERIRYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQKGLVILDFESK EKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDK CPWKEQNYTTCYTLYNELKEISKVDLKSLLRFLAEKGKRLGITLSKTAKEWLEGKKEEEDTVVEFEELRKELVKRDSGKP VEKIKEEICTKSPPKLIKEIICENKTYADVNIDRSRGDWHVILYLMKHGVTDPDKILELLPRDSKAKENEKWNTQKYFVI TLSKAWSVVKKYLEA SSNFSSERIRYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQKGLVILDFESK EKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDK CPWKEQNYTTCYTLYNELKEISKVDLKSLLRFLAEKGKRLGITLSKTAKEWLEGKKEEEDTVVEFEELRKELVKRDSGKP VEKIKEEICTKSPPKLIKEIICENKTYADVNIDRSRGDWHVILYLMKHGVTDPDKILELLPRDSKAKENEKWNTQKYFVI TLSKAWSVVKKYLEA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 43080 Sulfolobus islandicus 511693 Escherichia coli BL21 plasmid Pet21b 1 2.41 48.97 VAPOR DIFFUSION, HANGING DROP 8.5 0.1M Tris-HCl pH 8.5, 30-35% PEG 4000, 200mM lithium sulphate, 2mM Tris-2-carboxyethyl-phosphine, VAPOR DIFFUSION, HANGING DROP chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2010-06-16 1 1 2011-07-13 1 2 2023-11-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2010-03-05 REL REL ZN ZINC ION GOL GLYCEROL SO4 SULFATE ION HOH water 1RO2 PDB ENTRY 1RO2 PDB experimental model ZN 1 2 ZN ZN 1 A GOL 371 3 GOL GOL 371 A SO4 372 4 SO4 SO4 372 A HOH 2 5 HOH HOH 2 A HOH 3 5 HOH HOH 3 A HOH 4 5 HOH HOH 4 A HOH 5 5 HOH HOH 5 A HOH 6 5 HOH HOH 6 A HOH 7 5 HOH HOH 7 A HOH 8 5 HOH HOH 8 A HOH 9 5 HOH HOH 9 A HOH 10 5 HOH HOH 10 A HOH 11 5 HOH HOH 11 A HOH 12 5 HOH HOH 12 A HOH 13 5 HOH HOH 13 A HOH 14 5 HOH HOH 14 A HOH 15 5 HOH HOH 15 A HOH 16 5 HOH HOH 16 A HOH 17 5 HOH HOH 17 A HOH 18 5 HOH HOH 18 A HOH 19 5 HOH HOH 19 A HOH 20 5 HOH HOH 20 A HOH 21 5 HOH HOH 21 A HOH 22 5 HOH HOH 22 A HOH 23 5 HOH HOH 23 A HOH 24 5 HOH HOH 24 A HOH 25 5 HOH HOH 25 A HOH 26 5 HOH HOH 26 A HOH 27 5 HOH HOH 27 A HOH 28 5 HOH HOH 28 A HOH 29 5 HOH HOH 29 A HOH 30 5 HOH HOH 30 A HOH 31 5 HOH HOH 31 A HOH 33 5 HOH HOH 33 A HOH 34 5 HOH HOH 34 A HOH 35 5 HOH HOH 35 A HOH 373 5 HOH HOH 373 A HOH 374 5 HOH HOH 374 A HOH 375 5 HOH HOH 375 A HOH 376 5 HOH HOH 376 A HOH 377 5 HOH HOH 377 A HOH 378 5 HOH HOH 378 A HOH 379 5 HOH HOH 379 A HOH 380 5 HOH HOH 380 A HOH 381 5 HOH HOH 381 A HOH 382 5 HOH HOH 382 A HOH 383 5 HOH HOH 383 A HOH 384 5 HOH HOH 384 A HOH 385 5 HOH HOH 385 A HOH 386 5 HOH HOH 386 A HOH 387 5 HOH HOH 387 A HOH 388 5 HOH HOH 388 A HOH 389 5 HOH HOH 389 A HOH 390 5 HOH HOH 390 A HOH 391 5 HOH HOH 391 A HOH 392 5 HOH HOH 392 A HOH 393 5 HOH HOH 393 A HOH 394 5 HOH HOH 394 A HOH 395 5 HOH HOH 395 A HOH 396 5 HOH HOH 396 A HOH 397 5 HOH HOH 397 A HOH 398 5 HOH HOH 398 A HOH 399 5 HOH HOH 399 A HOH 400 5 HOH HOH 400 A HOH 401 5 HOH HOH 401 A HOH 402 5 HOH HOH 402 A HOH 403 5 HOH HOH 403 A HOH 404 5 HOH HOH 404 A HOH 405 5 HOH HOH 405 A HOH 406 5 HOH HOH 406 A HOH 407 5 HOH HOH 407 A HOH 408 5 HOH HOH 408 A HOH 409 5 HOH HOH 409 A HOH 410 5 HOH HOH 410 A HOH 411 5 HOH HOH 411 A HOH 412 5 HOH HOH 412 A HOH 413 5 HOH HOH 413 A HOH 414 5 HOH HOH 414 A HOH 415 5 HOH HOH 415 A HOH 416 5 HOH HOH 416 A HOH 417 5 HOH HOH 417 A HOH 418 5 HOH HOH 418 A HOH 419 5 HOH HOH 419 A HOH 420 5 HOH HOH 420 A HOH 421 5 HOH HOH 421 A HOH 422 5 HOH HOH 422 A HOH 423 5 HOH HOH 423 A HOH 424 5 HOH HOH 424 A HOH 425 5 HOH HOH 425 A HOH 426 5 HOH HOH 426 A HOH 427 5 HOH HOH 427 A HOH 428 5 HOH HOH 428 A HOH 429 5 HOH HOH 429 A HOH 430 5 HOH HOH 430 A HOH 431 5 HOH HOH 431 A HOH 432 5 HOH HOH 432 A HOH 433 5 HOH HOH 433 A HOH 434 5 HOH HOH 434 A HOH 435 5 HOH HOH 435 A HOH 436 5 HOH HOH 436 A HOH 437 5 HOH HOH 437 A HOH 438 5 HOH HOH 438 A HOH 439 5 HOH HOH 439 A HOH 440 5 HOH HOH 440 A HOH 441 5 HOH HOH 441 A HOH 442 5 HOH HOH 442 A HOH 443 5 HOH HOH 443 A HOH 444 5 HOH HOH 444 A HOH 445 5 HOH HOH 445 A HOH 446 5 HOH HOH 446 A HOH 447 5 HOH HOH 447 A HOH 448 5 HOH HOH 448 A HOH 449 5 HOH HOH 449 A HOH 450 5 HOH HOH 450 A HOH 451 5 HOH HOH 451 A HOH 452 5 HOH HOH 452 A HOH 453 5 HOH HOH 453 A HOH 454 5 HOH HOH 454 A HOH 455 5 HOH HOH 455 A HOH 456 5 HOH HOH 456 A HOH 457 5 HOH HOH 457 A HOH 458 5 HOH HOH 458 A HOH 459 5 HOH HOH 459 A HOH 460 5 HOH HOH 460 A HOH 461 5 HOH HOH 461 A HOH 462 5 HOH HOH 462 A n 1 36 A n 2 37 A n 3 38 A n 4 39 A SER 40 n 5 SER 40 A SER 41 n 6 SER 41 A GLU 42 n 7 GLU 42 A ARG 43 n 8 ARG 43 A ILE 44 n 9 ILE 44 A ARG 45 n 10 ARG 45 A TYR 46 n 11 TYR 46 A ALA 47 n 12 ALA 47 A LYS 48 n 13 LYS 48 A TRP 49 n 14 TRP 49 A PHE 50 n 15 PHE 50 A LEU 51 n 16 LEU 51 A GLU 52 n 17 GLU 52 A HIS 53 n 18 HIS 53 A GLY 54 n 19 GLY 54 A PHE 55 n 20 PHE 55 A ASN 56 n 21 ASN 56 A ILE 57 n 22 ILE 57 A ILE 58 n 23 ILE 58 A PRO 59 n 24 PRO 59 A ILE 60 n 25 ILE 60 A ASP 61 n 26 ASP 61 A PRO 62 n 27 PRO 62 A GLU 63 n 28 GLU 63 A SER 64 n 29 SER 64 A LYS 65 n 30 LYS 65 A LYS 66 n 31 LYS 66 A PRO 67 n 32 PRO 67 A VAL 68 n 33 VAL 68 A LEU 69 n 34 LEU 69 A LYS 70 n 35 LYS 70 A GLU 71 n 36 GLU 71 A TRP 72 n 37 TRP 72 A GLN 73 n 38 GLN 73 A LYS 74 n 39 LYS 74 A TYR 75 n 40 TYR 75 A SER 76 n 41 SER 76 A HIS 77 n 42 HIS 77 A GLU 78 n 43 GLU 78 A MET 79 n 44 MET 79 A PRO 80 n 45 PRO 80 A SER 81 n 46 SER 81 A ASP 82 n 47 ASP 82 A GLU 83 n 48 GLU 83 A GLU 84 n 49 GLU 84 A LYS 85 n 50 LYS 85 A GLN 86 n 51 GLN 86 A ARG 87 n 52 ARG 87 A PHE 88 n 53 PHE 88 A LEU 89 n 54 LEU 89 A LYS 90 n 55 LYS 90 A MET 91 n 56 MET 91 A ILE 92 n 57 ILE 92 A GLU 93 n 58 GLU 93 A GLU 94 n 59 GLU 94 A GLY 95 n 60 GLY 95 A TYR 96 n 61 TYR 96 A ASN 97 n 62 ASN 97 A TYR 98 n 63 TYR 98 A ALA 99 n 64 ALA 99 A ILE 100 n 65 ILE 100 A PRO 101 n 66 PRO 101 A GLY 102 n 67 GLY 102 A GLY 103 n 68 GLY 103 A GLN 104 n 69 GLN 104 A LYS 105 n 70 LYS 105 A GLY 106 n 71 GLY 106 A LEU 107 n 72 LEU 107 A VAL 108 n 73 VAL 108 A ILE 109 n 74 ILE 109 A LEU 110 n 75 LEU 110 A ASP 111 n 76 ASP 111 A PHE 112 n 77 PHE 112 A GLU 113 n 78 GLU 113 A SER 114 n 79 SER 114 A LYS 115 n 80 LYS 115 A GLU 116 n 81 GLU 116 A LYS 117 n 82 LYS 117 A LEU 118 n 83 LEU 118 A LYS 119 n 84 LYS 119 A ALA 120 n 85 ALA 120 A TRP 121 n 86 TRP 121 A ILE 122 n 87 ILE 122 A GLY 123 n 88 GLY 123 A GLU 124 n 89 GLU 124 A SER 125 n 90 SER 125 A ALA 126 n 91 ALA 126 A LEU 127 n 92 LEU 127 A GLU 128 n 93 GLU 128 A GLU 129 n 94 GLU 129 A LEU 130 n 95 LEU 130 A CYS 131 n 96 CYS 131 A ARG 132 n 97 ARG 132 A LYS 133 n 98 LYS 133 A THR 134 n 99 THR 134 A LEU 135 n 100 LEU 135 A CYS 136 n 101 CYS 136 A THR 137 n 102 THR 137 A ASN 138 n 103 ASN 138 A THR 139 n 104 THR 139 A VAL 140 n 105 VAL 140 A HIS 141 n 106 HIS 141 A GLY 142 n 107 GLY 142 A GLY 143 n 108 GLY 143 A ILE 144 n 109 ILE 144 A HIS 145 n 110 HIS 145 A ILE 146 n 111 ILE 146 A TYR 147 n 112 TYR 147 A VAL 148 n 113 VAL 148 A LEU 149 n 114 LEU 149 A SER 150 n 115 SER 150 A ASN 151 n 116 ASN 151 A ASP 152 n 117 ASP 152 A ILE 153 n 118 ILE 153 A PRO 154 n 119 PRO 154 A PRO 155 n 120 PRO 155 A HIS 156 n 121 HIS 156 A LYS 157 n 122 LYS 157 A ILE 158 n 123 ILE 158 A ASN 159 n 124 ASN 159 A PRO 160 n 125 PRO 160 A LEU 161 n 126 LEU 161 A PHE 162 n 127 PHE 162 A GLU 163 n 128 GLU 163 A GLU 164 n 129 GLU 164 A ASN 165 n 130 ASN 165 A GLY 166 n 131 GLY 166 A LYS 167 n 132 LYS 167 A GLY 168 n 133 GLY 168 A ILE 169 n 134 ILE 169 A ILE 170 n 135 ILE 170 A ASP 171 n 136 ASP 171 A LEU 172 n 137 LEU 172 A GLN 173 n 138 GLN 173 A SER 174 n 139 SER 174 A TYR 175 n 140 TYR 175 A ASN 176 n 141 ASN 176 A SER 177 n 142 SER 177 A TYR 178 n 143 TYR 178 A VAL 179 n 144 VAL 179 A LEU 180 n 145 LEU 180 A GLY 181 n 146 GLY 181 A LEU 182 n 147 LEU 182 A GLY 183 n 148 GLY 183 A SER 184 n 149 SER 184 A CYS 185 n 150 CYS 185 A VAL 186 n 151 VAL 186 A ASN 187 n 152 ASN 187 A HIS 188 n 153 HIS 188 A LEU 189 n 154 LEU 189 A HIS 190 n 155 HIS 190 A CYS 191 n 156 CYS 191 A THR 192 n 157 THR 192 A THR 193 n 158 THR 193 A ASP 194 n 159 ASP 194 A LYS 195 n 160 LYS 195 A CYS 196 n 161 CYS 196 A PRO 197 n 162 PRO 197 A TRP 198 n 163 TRP 198 A LYS 199 n 164 LYS 199 A GLU 200 n 165 GLU 200 A GLN 201 n 166 GLN 201 A ASN 202 n 167 ASN 202 A TYR 203 n 168 TYR 203 A THR 204 n 169 THR 204 A THR 205 n 170 THR 205 A CYS 206 n 171 CYS 206 A TYR 207 n 172 TYR 207 A THR 208 n 173 THR 208 A LEU 209 n 174 LEU 209 A TYR 210 n 175 TYR 210 A ASN 211 n 176 ASN 211 A GLU 212 n 177 GLU 212 A LEU 213 n 178 LEU 213 A LYS 214 n 179 LYS 214 A GLU 215 n 180 GLU 215 A ILE 216 n 181 ILE 216 A SER 217 n 182 SER 217 A LYS 218 n 183 LYS 218 A VAL 219 n 184 VAL 219 A ASP 220 n 185 ASP 220 A LEU 221 n 186 LEU 221 A LYS 222 n 187 LYS 222 A SER 223 n 188 SER 223 A LEU 224 n 189 LEU 224 A LEU 225 n 190 LEU 225 A ARG 226 n 191 ARG 226 A PHE 227 n 192 PHE 227 A LEU 228 n 193 LEU 228 A ALA 229 n 194 ALA 229 A GLU 230 n 195 GLU 230 A LYS 231 n 196 LYS 231 A GLY 232 n 197 GLY 232 A LYS 233 n 198 LYS 233 A ARG 234 n 199 ARG 234 A LEU 235 n 200 LEU 235 A GLY 236 n 201 GLY 236 A ILE 237 n 202 ILE 237 A THR 238 n 203 THR 238 A LEU 239 n 204 LEU 239 A SER 240 n 205 SER 240 A LYS 241 n 206 LYS 241 A THR 242 n 207 THR 242 A ALA 243 n 208 ALA 243 A LYS 244 n 209 LYS 244 A GLU 245 n 210 GLU 245 A TRP 246 n 211 TRP 246 A LEU 247 n 212 LEU 247 A GLU 248 n 213 GLU 248 A GLY 249 n 214 GLY 249 A n 215 250 A n 216 251 A n 217 252 A n 218 253 A n 219 254 A n 220 255 A n 221 256 A n 222 257 A n 223 258 A n 224 259 A n 225 260 A GLU 261 n 226 GLU 261 A GLU 262 n 227 GLU 262 A LEU 263 n 228 LEU 263 A ARG 264 n 229 ARG 264 A LYS 265 n 230 LYS 265 A GLU 266 n 231 GLU 266 A LEU 267 n 232 LEU 267 A VAL 268 n 233 VAL 268 A LYS 269 n 234 LYS 269 A ARG 270 n 235 ARG 270 A ASP 271 n 236 ASP 271 A SER 272 n 237 SER 272 A GLY 273 n 238 GLY 273 A LYS 274 n 239 LYS 274 A PRO 275 n 240 PRO 275 A VAL 276 n 241 VAL 276 A GLU 277 n 242 GLU 277 A LYS 278 n 243 LYS 278 A ILE 279 n 244 ILE 279 A LYS 280 n 245 LYS 280 A GLU 281 n 246 GLU 281 A GLU 282 n 247 GLU 282 A ILE 283 n 248 ILE 283 A CYS 284 n 249 CYS 284 A THR 285 n 250 THR 285 A LYS 286 n 251 LYS 286 A SER 287 n 252 SER 287 A PRO 288 n 253 PRO 288 A PRO 289 n 254 PRO 289 A LYS 290 n 255 LYS 290 A LEU 291 n 256 LEU 291 A ILE 292 n 257 ILE 292 A LYS 293 n 258 LYS 293 A GLU 294 n 259 GLU 294 A ILE 295 n 260 ILE 295 A ILE 296 n 261 ILE 296 A CYS 297 n 262 CYS 297 A GLU 298 n 263 GLU 298 A ASN 299 n 264 ASN 299 A LYS 300 n 265 LYS 300 A THR 301 n 266 THR 301 A TYR 302 n 267 TYR 302 A ALA 303 n 268 ALA 303 A ASP 304 n 269 ASP 304 A VAL 305 n 270 VAL 305 A ASN 306 n 271 ASN 306 A ILE 307 n 272 ILE 307 A ASP 308 n 273 ASP 308 A ARG 309 n 274 ARG 309 A SER 310 n 275 SER 310 A ARG 311 n 276 ARG 311 A GLY 312 n 277 GLY 312 A ASP 313 n 278 ASP 313 A TRP 314 n 279 TRP 314 A HIS 315 n 280 HIS 315 A VAL 316 n 281 VAL 316 A ILE 317 n 282 ILE 317 A LEU 318 n 283 LEU 318 A TYR 319 n 284 TYR 319 A LEU 320 n 285 LEU 320 A MET 321 n 286 MET 321 A LYS 322 n 287 LYS 322 A HIS 323 n 288 HIS 323 A GLY 324 n 289 GLY 324 A VAL 325 n 290 VAL 325 A THR 326 n 291 THR 326 A ASP 327 n 292 ASP 327 A PRO 328 n 293 PRO 328 A ASP 329 n 294 ASP 329 A LYS 330 n 295 LYS 330 A ILE 331 n 296 ILE 331 A LEU 332 n 297 LEU 332 A GLU 333 n 298 GLU 333 A LEU 334 n 299 LEU 334 A LEU 335 n 300 LEU 335 A PRO 336 n 301 PRO 336 A ARG 337 n 302 ARG 337 A ASP 338 n 303 ASP 338 A SER 339 n 304 SER 339 A LYS 340 n 305 LYS 340 A ALA 341 n 306 ALA 341 A LYS 342 n 307 LYS 342 A GLU 343 n 308 GLU 343 A ASN 344 n 309 ASN 344 A GLU 345 n 310 GLU 345 A LYS 346 n 311 LYS 346 A TRP 347 n 312 TRP 347 A ASN 348 n 313 ASN 348 A THR 349 n 314 THR 349 A GLN 350 n 315 GLN 350 A LYS 351 n 316 LYS 351 A TYR 352 n 317 TYR 352 A PHE 353 n 318 PHE 353 A VAL 354 n 319 VAL 354 A ILE 355 n 320 ILE 355 A THR 356 n 321 THR 356 A LEU 357 n 322 LEU 357 A SER 358 n 323 SER 358 A LYS 359 n 324 LYS 359 A ALA 360 n 325 ALA 360 A TRP 361 n 326 TRP 361 A SER 362 n 327 SER 362 A VAL 363 n 328 VAL 363 A VAL 364 n 329 VAL 364 A LYS 365 n 330 LYS 365 A LYS 366 n 331 LYS 366 A TYR 367 n 332 TYR 367 A LEU 368 n 333 LEU 368 A GLU 369 n 334 GLU 369 A ALA 370 n 335 ALA 370 A 0.4170 -0.2719 0.0519 0.5303 0.1648 0.3689 0.0310 0.0284 0.0209 -0.0337 -0.0602 -0.0069 -0.0062 -0.0443 0.0292 -0.0250 -0.0063 0.0044 -0.0175 0.0050 -0.0112 refined 20.2770 -22.9210 -6.4660 X-RAY DIFFRACTION 1.5390 -0.5829 -0.0201 1.7490 -0.5340 0.9055 0.0996 0.0305 -0.0363 -0.0591 0.0360 -0.1711 -0.0488 -0.1993 -0.1355 -0.0490 0.0004 0.0039 0.0471 -0.0373 -0.0703 refined -0.7520 -24.1420 -27.2480 X-RAY DIFFRACTION A 40 A 249 X-RAY DIFFRACTION 1 A 261 A 370 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 1 monomeric A HIS 141 A NE2 HIS 106 1_555 A ZN 1 B ZN ZN 1_555 A HIS 188 A ND1 HIS 153 1_555 102.9 A HIS 141 A NE2 HIS 106 1_555 A ZN 1 B ZN ZN 1_555 A CYS 191 A SG CYS 156 1_555 112.2 A HIS 188 A ND1 HIS 153 1_555 A ZN 1 B ZN ZN 1_555 A CYS 191 A SG CYS 156 1_555 110.2 A HIS 141 A NE2 HIS 106 1_555 A ZN 1 B ZN ZN 1_555 A CYS 196 A SG CYS 161 1_555 104.8 A HIS 188 A ND1 HIS 153 1_555 A ZN 1 B ZN ZN 1_555 A CYS 196 A SG CYS 161 1_555 110.9 A CYS 191 A SG CYS 156 1_555 A ZN 1 B ZN ZN 1_555 A CYS 196 A SG CYS 161 1_555 115.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 60 A N ILE 25 A O ASN 97 A O ASN 62 A N ILE 100 A N ILE 65 A O VAL 179 A O VAL 144 A O THR 208 A O THR 173 A N ASN 138 A N ASN 103 A N THR 137 A N THR 102 A O HIS 145 A O HIS 110 A O ILE 146 A O ILE 111 A N LEU 110 A N LEU 75 A N ILE 109 A N ILE 74 A O GLN 173 A O GLN 138 A O LEU 172 A O LEU 137 A N ILE 158 A N ILE 123 A N GLU 163 A N GLU 128 A O THR 238 A O THR 203 A N VAL 186 A N VAL 151 A O THR 205 A O THR 170 1 A SER 36 A SER 1 1 Y 1 A SER 37 A SER 2 1 Y 1 A ASN 38 A ASN 3 1 Y 1 A PHE 39 A PHE 4 1 Y 1 A LYS 250 A LYS 215 1 Y 1 A LYS 251 A LYS 216 1 Y 1 A GLU 252 A GLU 217 1 Y 1 A GLU 253 A GLU 218 1 Y 1 A GLU 254 A GLU 219 1 Y 1 A ASP 255 A ASP 220 1 Y 1 A THR 256 A THR 221 1 Y 1 A VAL 257 A VAL 222 1 Y 1 A VAL 258 A VAL 223 1 Y 1 A GLU 259 A GLU 224 1 Y 1 A PHE 260 A PHE 225 1 Y 1 A A O O HOH HOH 426 455 1.81 1 A A O O HOH HOH 419 461 2.13 1 A A OH OE1 TYR GLU 75 84 2.13 1 A A O O HOH HOH 377 432 2.19 1 A GLU 71 -110.00 64.49 1 A HIS 77 -147.38 -17.79 1 A LYS 105 57.76 16.73 1 A SER 174 -121.95 -139.89 1 A ASN 211 -136.49 -85.62 1 A GLU 248 -118.33 72.14 1 A LYS 342 -133.66 -32.77 67.60 27.222 10.14 -0.27 0.00 0.16 0.70 0.00 -0.26 0.945 0.915 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.25074 0.20408 0.20644 1.85 50.00 1541 28819 5.1 94.88 1.00 0.50 7.217 0.113 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.154 0.148 0.80 0.80 1.20 PDB ENTRY 1RO2 MAXIMUM LIKELIHOOD MASK 1.85 50.00 123 2751 12 0 2616 0.017 0.022 2686 1.698 1.980 3620 6.354 5.000 318 38.040 24.872 117 18.830 15.000 528 11.957 15.000 11 0.133 0.200 391 0.008 0.021 1958 0.968 1.500 1596 1.846 2.000 2591 3.047 3.000 1090 4.949 4.500 1029 0.343 0.284 1.898 99 1637 20 74.38 1.85 50.00 3M1M 30362 1 537575 refinement REFMAC 5.4.0067 Crystal structure of the primase-polymerase from Sulfolobus islandicus 1 N N 2 N N 3 N N 4 N N 5 N N A SER 40 A SER 5 HELX_P A HIS 53 A HIS 18 1 1 14 A GLU 71 A GLU 36 HELX_P A HIS 77 A HIS 42 5 2 7 A SER 81 A SER 46 HELX_P A GLU 94 A GLU 59 1 3 14 A GLY 103 A GLY 68 HELX_P A LYS 105 A LYS 70 5 4 3 A SER 114 A SER 79 HELX_P A GLY 123 A GLY 88 1 5 10 A GLY 123 A GLY 88 HELX_P A THR 134 A THR 99 1 6 12 A LEU 189 A LEU 154 HELX_P A CYS 191 A CYS 156 5 7 3 A ASP 220 A ASP 185 HELX_P A LYS 233 A LYS 198 1 8 14 A SER 240 A SER 205 HELX_P A GLU 248 A GLU 213 1 9 9 A GLU 261 A GLU 226 HELX_P A ASP 271 A ASP 236 1 10 11 A PRO 275 A PRO 240 HELX_P A THR 285 A THR 250 1 11 11 A PRO 289 A PRO 254 HELX_P A CYS 297 A CYS 262 1 12 9 A ASP 308 A ASP 273 HELX_P A HIS 323 A HIS 288 1 13 16 A ASP 327 A ASP 292 HELX_P A LEU 335 A LEU 300 1 14 9 A GLU 345 A GLU 310 HELX_P A GLU 369 A GLU 334 1 15 25 disulf 2.035 A CYS 185 A SG CYS 150 1_555 A CYS 206 A SG CYS 171 1_555 disulf 2.049 A CYS 284 A SG CYS 249 1_555 A CYS 297 A SG CYS 262 1_555 metalc 2.109 A ZN 1 B ZN ZN 1_555 A HIS 141 A NE2 HIS 106 1_555 metalc 2.102 A ZN 1 B ZN ZN 1_555 A HIS 188 A ND1 HIS 153 1_555 metalc 2.412 A ZN 1 B ZN ZN 1_555 A CYS 191 A SG CYS 156 1_555 metalc 2.192 A ZN 1 B ZN ZN 1_555 A CYS 196 A SG CYS 161 1_555 REPLICATION primase, polymerase, Replication A ASN 159 A ASN 124 1 A PRO 160 A PRO 125 5.01 A SER 272 A SER 237 1 A GLY 273 A GLY 238 -21.82 Q54324_SULIS UNP 1 36 Q54324 SSNFSSERIRYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQKGLVILDFESK EKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDK CPWKEQNYTTCYTLYNELKEISKVDLKSLLRFLAEKGKRLGITLSKTAKEWLEGKKEEEDTVVEFEELRKELVKRDSGKP VEKIKEEICTKSPPKLIKEIICENKTYADVNIDRSRGDWHVILYLMKHGVTDPDKILELLPRDSKAKENEKWNTQKYFVI TLSKAWSVVKKYLEA 36 370 3M1M 36 370 Q54324 A 1 1 335 3 7 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 58 A ILE 23 A ILE 60 A ILE 25 A ASN 97 A ASN 62 A PRO 101 A PRO 66 A TYR 178 A TYR 143 A LEU 180 A LEU 145 A THR 208 A THR 173 A LEU 209 A LEU 174 A CYS 136 A CYS 101 A ASN 138 A ASN 103 A ILE 144 A ILE 109 A LEU 149 A LEU 114 A LEU 107 A LEU 72 A PHE 112 A PHE 77 A LYS 167 A LYS 132 A GLN 173 A GLN 138 A ILE 158 A ILE 123 A GLU 164 A GLU 129 A ILE 237 A ILE 202 A LEU 239 A LEU 204 A CYS 185 A CYS 150 A ASN 187 A ASN 152 A THR 204 A THR 169 A CYS 206 A CYS 171 BINDING SITE FOR RESIDUE ZN A 1 A ZN 1 Software 4 BINDING SITE FOR RESIDUE GOL A 371 A GOL 371 Software 3 BINDING SITE FOR RESIDUE SO4 A 372 A SO4 372 Software 8 A HIS 141 A HIS 106 4 1_555 A HIS 188 A HIS 153 4 1_555 A CYS 191 A CYS 156 4 1_555 A CYS 196 A CYS 161 4 1_555 A GLY 123 A GLY 88 3 1_555 A GLU 124 A GLU 89 3 1_555 A HOH 406 E HOH 3 1_555 A HOH 28 E HOH 8 1_555 A THR 139 A THR 104 8 1_555 A VAL 140 A VAL 105 8 1_555 A HIS 141 A HIS 106 8 1_555 A TYR 207 A TYR 172 8 1_555 A HOH 428 E HOH 8 1_555 A HOH 429 E HOH 8 1_555 A HOH 436 E HOH 8 1_555 5 C 1 2 1