0.016504
0.000000
0.000000
0.000000
0.016021
0.000000
0.000000
0.000000
0.010409
0.00000
0.00000
0.00000
Feng, L.
Li, D.
Wang, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
60.590
62.420
96.070
C8 H15 N O6
221.208
2-acetamido-2-deoxy-alpha-D-galactopyranose
N-acetyl-alpha-D-galactosamine; 2-acetamido-2-deoxy-alpha-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
D-saccharide, alpha linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-galactopyranose
beta-D-galactose; D-galactose; galactose
D-saccharide, beta linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H5 N O3
139.109
P-NITROPHENOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
S
C
N
3
N
O
N
4
R
C
N
5
N
N
N
6
R
C
N
7
N
O
N
8
R
C
N
9
N
O
N
10
R
C
N
11
N
C
N
12
N
O
N
13
N
C
N
14
N
O
N
15
N
C
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
N
N
32
S
C
N
33
N
C
N
34
N
O
N
35
N
C
N
36
N
O
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
N
N
45
S
C
N
46
N
C
N
47
N
O
N
48
N
C
N
49
N
C
N
50
N
C
N
51
N
N
N
52
N
C
N
53
N
N
N
54
N
N
N
55
N
O
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
N
N
72
S
C
N
73
N
C
N
74
N
O
N
75
N
C
N
76
N
C
N
77
N
O
N
78
N
N
N
79
N
O
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
O
N
95
N
O
N
96
N
O
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
R
C
N
105
R
C
N
106
S
C
N
107
R
C
N
108
R
C
N
109
N
C
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
S
C
N
130
N
C
N
131
N
O
N
132
N
C
N
133
N
C
N
134
N
C
N
135
N
O
N
136
N
N
N
137
N
O
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
O
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
N
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
N
N
178
S
C
N
179
N
C
N
180
N
O
N
181
N
C
Y
182
N
C
Y
183
N
N
Y
184
N
C
Y
185
N
C
Y
186
N
N
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
O
N
199
N
H
N
200
N
H
N
201
N
N
N
202
S
C
N
203
N
C
N
204
N
O
N
205
S
C
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
N
N
254
N
O
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
S
N
277
N
C
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
N
296
N
O
N
297
N
N
N
298
N
O
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
O
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
S
N
360
N
O
N
361
N
O
N
362
N
O
N
363
N
O
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
R
C
N
369
N
O
N
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
N
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
N
N
409
S
C
N
410
N
C
N
411
N
O
N
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
N
419
N
O
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
N
437
N
C
N
438
N
C
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
doub
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
doub
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
Y
181
N
sing
Y
182
N
doub
Y
183
N
doub
N
184
N
sing
Y
185
N
sing
N
186
N
sing
Y
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
Y
278
N
doub
Y
279
N
sing
N
280
N
sing
Y
281
N
sing
N
282
N
sing
Y
283
N
doub
N
284
N
sing
Y
285
N
sing
N
286
N
sing
Y
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
Y
377
N
doub
Y
378
N
sing
Y
379
N
sing
N
380
N
sing
Y
381
N
doub
Y
382
N
sing
Y
383
N
sing
N
384
N
sing
Y
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
Y
405
N
doub
Y
406
N
sing
Y
407
N
sing
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
doub
N
412
N
sing
Y
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
US
Faseb J.
FAJOEC
2074
0892-6638
24
3861
3868
10.1096/fj.10-159111
20530247
Structural insights into the recognition mechanism between an antitumor galectin AAL and the Thomsen-Friedenreich antigen
2010
10.2210/pdb3m3c/pdb
pdb_00003m3c
100
1
CCD
2009-10-27
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.964
1.0
BL-17A
Photon Factory
0.964
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-17A
17108.996
Anti-tumor lectin
3.1.21.-
2
man
polymer
383.349
beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose
2
man
branched
139.109
P-NITROPHENOL
2
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
264
nat
water
AAL
Thomsen-Friedenreich antigen
no
no
MQGVNIYNISAGTSVDLAAPVTTGDIVTFFSSALNLNAGAGNPNNTTLNLFAENGAYLLHIAFRLQENVIIFNSRQPDGP
WLVEQRVSDVANQFAGIDGKAMVTVFDHGDKYQVVINEKTVIQYTKQISGLTSSLSYNATEETSIFSTVVEAVTYTGLA
MQGVNIYNISAGTSVDLAAPVTTGDIVTFFSSALNLNAGAGNPNNTTLNLFAENGAYLLHIAFRLQENVIIFNSRQPDGP
WLVEQRVSDVANQFAGIDGKAMVTVFDHGDKYQVVINEKTVIQYTKQISGLTSSLSYNATEETSIFSTVVEAVTYTGLA
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Black poplar mushroom
sample
AAL
5400
Agrocybe aegerita
562
Escherichia coli
BL21(DE3)
plasmid
pET22b
1
2.65
53.66
hanging drop
5.5
25% PEG3350, 0.2M LiCl, 5% acetone, pH 5.5, hanging drop, temperature 298K
298
software
atom_site
chem_comp
entity
entity_name_com
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_molecule_features
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Refinement description
Atomic model
Data collection
Database references
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2010-12-01
1
1
2011-07-13
1
2
2017-11-08
2
0
2020-07-29
2
1
2023-11-01
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
C
TFG
240
n
C
A2G
1
C
TFG
240
n
C
GAL
2
D
TFG
240
n
D
A2G
1
D
TFG
240
n
D
GAL
2
DGalpNAca
N-acetyl-a-D-galactopyranosamine
a-D-GalpNAc
GalNAc
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
AAL complexed with Thomsen-Friedenreich antigen
AAL nutant E66A complexed with p-Nitrophenyl TF disaccharide
AAL nutant R85A complexed with p-Nitrophenyl TF disaccharide
AAL complexed with Ganglosides GM1 pentasaccharide
RCSB
Y
PDBJ
2010-03-09
REL
REL
oligosaccharide
DGalpb1-3DGalpNAca1-ROH
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,2,1/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2/a3-b1
2
PDB2Glycan
1.1.0
WURCS
[][D-1-deoxy-GalpNAc]{[(3+1)][b-D-Galp]{}}
2
PDB-CARE
LINUCS
C1
O3
GAL
A2G
2
1
2
O1
HO3
sing
n
n
NPO
P-NITROPHENOL
SO4
SULFATE ION
HOH
water
IT IS AN ALLELE GENE OF THE GENE IN THE GENBANK DATABASE.
2ZGL
PDB
experimental model
Antigen
oligosaccharide
Thomsen-Friedenreich antigen
Oligosaccharide
TFG
240
3
NPO
NPO
242
A
TFG
240
3
NPO
NPO
242
B
SO4
1
4
SO4
SO4
159
B
HOH
19
5
HOH
HOH
159
A
HOH
160
5
HOH
HOH
160
A
HOH
21
5
HOH
HOH
161
A
HOH
162
5
HOH
HOH
162
A
HOH
22
5
HOH
HOH
163
A
HOH
24
5
HOH
HOH
164
A
HOH
165
5
HOH
HOH
165
A
HOH
26
5
HOH
HOH
166
A
HOH
167
5
HOH
HOH
167
A
HOH
27
5
HOH
HOH
168
A
HOH
169
5
HOH
HOH
169
A
HOH
170
5
HOH
HOH
170
A
HOH
28
5
HOH
HOH
171
A
HOH
29
5
HOH
HOH
172
A
HOH
173
5
HOH
HOH
173
A
HOH
30
5
HOH
HOH
174
A
HOH
31
5
HOH
HOH
175
A
HOH
33
5
HOH
HOH
176
A
HOH
36
5
HOH
HOH
177
A
HOH
39
5
HOH
HOH
178
A
HOH
179
5
HOH
HOH
179
A
HOH
180
5
HOH
HOH
180
A
HOH
181
5
HOH
HOH
181
A
HOH
182
5
HOH
HOH
182
A
HOH
42
5
HOH
HOH
183
A
HOH
184
5
HOH
HOH
184
A
HOH
185
5
HOH
HOH
185
A
HOH
186
5
HOH
HOH
186
A
HOH
43
5
HOH
HOH
187
A
HOH
44
5
HOH
HOH
188
A
HOH
189
5
HOH
HOH
189
A
HOH
190
5
HOH
HOH
190
A
HOH
47
5
HOH
HOH
191
A
HOH
49
5
HOH
HOH
192
A
HOH
53
5
HOH
HOH
193
A
HOH
54
5
HOH
HOH
194
A
HOH
55
5
HOH
HOH
195
A
HOH
56
5
HOH
HOH
196
A
HOH
60
5
HOH
HOH
197
A
HOH
62
5
HOH
HOH
198
A
HOH
199
5
HOH
HOH
199
A
HOH
63
5
HOH
HOH
200
A
HOH
65
5
HOH
HOH
201
A
HOH
66
5
HOH
HOH
202
A
HOH
69
5
HOH
HOH
203
A
HOH
204
5
HOH
HOH
204
A
HOH
70
5
HOH
HOH
205
A
HOH
71
5
HOH
HOH
206
A
HOH
72
5
HOH
HOH
207
A
HOH
208
5
HOH
HOH
208
A
HOH
74
5
HOH
HOH
209
A
HOH
79
5
HOH
HOH
210
A
HOH
81
5
HOH
HOH
211
A
HOH
84
5
HOH
HOH
212
A
HOH
86
5
HOH
HOH
213
A
HOH
87
5
HOH
HOH
214
A
HOH
91
5
HOH
HOH
215
A
HOH
92
5
HOH
HOH
216
A
HOH
217
5
HOH
HOH
217
A
HOH
101
5
HOH
HOH
218
A
HOH
102
5
HOH
HOH
219
A
HOH
103
5
HOH
HOH
220
A
HOH
104
5
HOH
HOH
221
A
HOH
106
5
HOH
HOH
222
A
HOH
107
5
HOH
HOH
223
A
HOH
224
5
HOH
HOH
224
A
HOH
225
5
HOH
HOH
225
A
HOH
227
5
HOH
HOH
227
A
HOH
228
5
HOH
HOH
228
A
HOH
229
5
HOH
HOH
229
A
HOH
230
5
HOH
HOH
230
A
HOH
231
5
HOH
HOH
231
A
HOH
232
5
HOH
HOH
232
A
HOH
233
5
HOH
HOH
233
A
HOH
234
5
HOH
HOH
234
A
HOH
235
5
HOH
HOH
235
A
HOH
114
5
HOH
HOH
236
A
HOH
116
5
HOH
HOH
237
A
HOH
238
5
HOH
HOH
238
A
HOH
239
5
HOH
HOH
239
A
HOH
243
5
HOH
HOH
243
A
HOH
244
5
HOH
HOH
244
A
HOH
245
5
HOH
HOH
245
A
HOH
246
5
HOH
HOH
246
A
HOH
127
5
HOH
HOH
247
A
HOH
128
5
HOH
HOH
248
A
HOH
249
5
HOH
HOH
249
A
HOH
131
5
HOH
HOH
250
A
HOH
132
5
HOH
HOH
251
A
HOH
138
5
HOH
HOH
252
A
HOH
157
5
HOH
HOH
253
A
HOH
254
5
HOH
HOH
254
A
HOH
255
5
HOH
HOH
255
A
HOH
158
5
HOH
HOH
256
A
HOH
240
5
HOH
HOH
257
A
HOH
242
5
HOH
HOH
258
A
HOH
1
5
HOH
HOH
259
A
HOH
4
5
HOH
HOH
260
A
HOH
261
5
HOH
HOH
261
A
HOH
6
5
HOH
HOH
262
A
HOH
265
5
HOH
HOH
265
A
HOH
266
5
HOH
HOH
266
A
HOH
267
5
HOH
HOH
267
A
HOH
271
5
HOH
HOH
271
A
HOH
273
5
HOH
HOH
273
A
HOH
279
5
HOH
HOH
279
A
HOH
281
5
HOH
HOH
281
A
HOH
283
5
HOH
HOH
283
A
HOH
285
5
HOH
HOH
285
A
HOH
286
5
HOH
HOH
286
A
HOH
288
5
HOH
HOH
288
A
HOH
296
5
HOH
HOH
296
A
HOH
299
5
HOH
HOH
299
A
HOH
301
5
HOH
HOH
301
A
HOH
302
5
HOH
HOH
302
A
HOH
305
5
HOH
HOH
305
A
HOH
306
5
HOH
HOH
306
A
HOH
307
5
HOH
HOH
307
A
HOH
321
5
HOH
HOH
321
A
HOH
324
5
HOH
HOH
324
A
HOH
330
5
HOH
HOH
330
A
HOH
332
5
HOH
HOH
332
A
HOH
334
5
HOH
HOH
334
A
HOH
335
5
HOH
HOH
335
A
HOH
336
5
HOH
HOH
336
A
HOH
337
5
HOH
HOH
337
A
HOH
342
5
HOH
HOH
342
A
HOH
343
5
HOH
HOH
343
A
HOH
344
5
HOH
HOH
344
A
HOH
345
5
HOH
HOH
345
A
HOH
347
5
HOH
HOH
347
A
HOH
349
5
HOH
HOH
349
A
HOH
351
5
HOH
HOH
351
A
HOH
354
5
HOH
HOH
354
A
HOH
355
5
HOH
HOH
355
A
HOH
23
5
HOH
HOH
160
B
HOH
161
5
HOH
HOH
161
B
HOH
25
5
HOH
HOH
162
B
HOH
32
5
HOH
HOH
163
B
HOH
164
5
HOH
HOH
164
B
HOH
34
5
HOH
HOH
165
B
HOH
166
5
HOH
HOH
166
B
HOH
35
5
HOH
HOH
167
B
HOH
37
5
HOH
HOH
168
B
HOH
38
5
HOH
HOH
169
B
HOH
40
5
HOH
HOH
170
B
HOH
171
5
HOH
HOH
171
B
HOH
41
5
HOH
HOH
172
B
HOH
45
5
HOH
HOH
173
B
HOH
46
5
HOH
HOH
174
B
HOH
48
5
HOH
HOH
175
B
HOH
50
5
HOH
HOH
176
B
HOH
177
5
HOH
HOH
177
B
HOH
51
5
HOH
HOH
178
B
HOH
52
5
HOH
HOH
179
B
HOH
57
5
HOH
HOH
180
B
HOH
58
5
HOH
HOH
181
B
HOH
59
5
HOH
HOH
182
B
HOH
61
5
HOH
HOH
183
B
HOH
67
5
HOH
HOH
184
B
HOH
68
5
HOH
HOH
185
B
HOH
73
5
HOH
HOH
186
B
HOH
75
5
HOH
HOH
187
B
HOH
76
5
HOH
HOH
188
B
HOH
77
5
HOH
HOH
189
B
HOH
78
5
HOH
HOH
190
B
HOH
80
5
HOH
HOH
191
B
HOH
192
5
HOH
HOH
192
B
HOH
82
5
HOH
HOH
193
B
HOH
85
5
HOH
HOH
194
B
HOH
88
5
HOH
HOH
195
B
HOH
196
5
HOH
HOH
196
B
HOH
89
5
HOH
HOH
197
B
HOH
90
5
HOH
HOH
198
B
HOH
93
5
HOH
HOH
199
B
HOH
94
5
HOH
HOH
200
B
HOH
201
5
HOH
HOH
201
B
HOH
95
5
HOH
HOH
202
B
HOH
96
5
HOH
HOH
203
B
HOH
97
5
HOH
HOH
204
B
HOH
98
5
HOH
HOH
205
B
HOH
99
5
HOH
HOH
206
B
HOH
100
5
HOH
HOH
207
B
HOH
105
5
HOH
HOH
208
B
HOH
108
5
HOH
HOH
209
B
HOH
109
5
HOH
HOH
210
B
HOH
110
5
HOH
HOH
211
B
HOH
112
5
HOH
HOH
212
B
HOH
117
5
HOH
HOH
213
B
HOH
119
5
HOH
HOH
214
B
HOH
121
5
HOH
HOH
215
B
HOH
216
5
HOH
HOH
216
B
HOH
123
5
HOH
HOH
217
B
HOH
124
5
HOH
HOH
218
B
HOH
125
5
HOH
HOH
219
B
HOH
129
5
HOH
HOH
220
B
HOH
130
5
HOH
HOH
221
B
HOH
222
5
HOH
HOH
222
B
HOH
223
5
HOH
HOH
223
B
HOH
148
5
HOH
HOH
224
B
HOH
156
5
HOH
HOH
225
B
HOH
111
5
HOH
HOH
226
B
HOH
159
5
HOH
HOH
227
B
HOH
2
5
HOH
HOH
228
B
HOH
4
5
HOH
HOH
229
B
HOH
6
5
HOH
HOH
230
B
HOH
7
5
HOH
HOH
231
B
HOH
9
5
HOH
HOH
232
B
HOH
1
5
HOH
HOH
233
B
HOH
2
5
HOH
HOH
234
B
HOH
3
5
HOH
HOH
235
B
HOH
236
5
HOH
HOH
236
B
HOH
5
5
HOH
HOH
237
B
HOH
226
5
HOH
HOH
238
B
HOH
247
5
HOH
HOH
247
B
HOH
248
5
HOH
HOH
248
B
HOH
250
5
HOH
HOH
250
B
HOH
251
5
HOH
HOH
251
B
HOH
252
5
HOH
HOH
252
B
HOH
253
5
HOH
HOH
253
B
HOH
256
5
HOH
HOH
256
B
HOH
257
5
HOH
HOH
257
B
HOH
258
5
HOH
HOH
258
B
HOH
259
5
HOH
HOH
259
B
HOH
260
5
HOH
HOH
260
B
HOH
262
5
HOH
HOH
262
B
HOH
263
5
HOH
HOH
263
B
HOH
268
5
HOH
HOH
268
B
HOH
272
5
HOH
HOH
272
B
HOH
274
5
HOH
HOH
274
B
HOH
275
5
HOH
HOH
275
B
HOH
276
5
HOH
HOH
276
B
HOH
277
5
HOH
HOH
277
B
HOH
278
5
HOH
HOH
278
B
HOH
280
5
HOH
HOH
280
B
HOH
282
5
HOH
HOH
282
B
HOH
290
5
HOH
HOH
290
B
HOH
291
5
HOH
HOH
291
B
HOH
293
5
HOH
HOH
293
B
HOH
300
5
HOH
HOH
300
B
HOH
308
5
HOH
HOH
308
B
HOH
309
5
HOH
HOH
309
B
HOH
310
5
HOH
HOH
310
B
HOH
311
5
HOH
HOH
311
B
HOH
312
5
HOH
HOH
312
B
HOH
313
5
HOH
HOH
313
B
HOH
314
5
HOH
HOH
314
B
HOH
315
5
HOH
HOH
315
B
HOH
316
5
HOH
HOH
316
B
HOH
317
5
HOH
HOH
317
B
HOH
318
5
HOH
HOH
318
B
HOH
319
5
HOH
HOH
319
B
HOH
320
5
HOH
HOH
320
B
HOH
322
5
HOH
HOH
322
B
HOH
325
5
HOH
HOH
325
B
HOH
326
5
HOH
HOH
326
B
HOH
328
5
HOH
HOH
328
B
HOH
329
5
HOH
HOH
329
B
HOH
331
5
HOH
HOH
331
B
HOH
340
5
HOH
HOH
340
B
HOH
346
5
HOH
HOH
346
B
HOH
348
5
HOH
HOH
348
B
HOH
356
5
HOH
HOH
356
B
HOH
357
5
HOH
HOH
357
B
2.500
2.500
43.480
43.480
Phaser MODE: MR_AUTO
MET
0
n
1
MET
0
A
GLN
1
n
2
GLN
1
A
GLY
2
n
3
GLY
2
A
VAL
3
n
4
VAL
3
A
ASN
4
n
5
ASN
4
A
ILE
5
n
6
ILE
5
A
TYR
6
n
7
TYR
6
A
ASN
7
n
8
ASN
7
A
ILE
8
n
9
ILE
8
A
SER
9
n
10
SER
9
A
ALA
10
n
11
ALA
10
A
GLY
11
n
12
GLY
11
A
THR
12
n
13
THR
12
A
SER
13
n
14
SER
13
A
VAL
14
n
15
VAL
14
A
ASP
15
n
16
ASP
15
A
LEU
16
n
17
LEU
16
A
ALA
17
n
18
ALA
17
A
ALA
18
n
19
ALA
18
A
PRO
19
n
20
PRO
19
A
VAL
20
n
21
VAL
20
A
THR
21
n
22
THR
21
A
THR
22
n
23
THR
22
A
GLY
23
n
24
GLY
23
A
ASP
24
n
25
ASP
24
A
ILE
25
n
26
ILE
25
A
VAL
26
n
27
VAL
26
A
THR
27
n
28
THR
27
A
PHE
28
n
29
PHE
28
A
PHE
29
n
30
PHE
29
A
SER
30
n
31
SER
30
A
SER
31
n
32
SER
31
A
ALA
32
n
33
ALA
32
A
LEU
33
n
34
LEU
33
A
ASN
34
n
35
ASN
34
A
LEU
35
n
36
LEU
35
A
ASN
36
n
37
ASN
36
A
ALA
37
n
38
ALA
37
A
GLY
38
n
39
GLY
38
A
ALA
39
n
40
ALA
39
A
GLY
40
n
41
GLY
40
A
ASN
41
n
42
ASN
41
A
PRO
42
n
43
PRO
42
A
ASN
43
n
44
ASN
43
A
ASN
44
n
45
ASN
44
A
THR
45
n
46
THR
45
A
THR
46
n
47
THR
46
A
LEU
47
n
48
LEU
47
A
ASN
48
n
49
ASN
48
A
LEU
49
n
50
LEU
49
A
PHE
50
n
51
PHE
50
A
ALA
51
n
52
ALA
51
A
GLU
52
n
53
GLU
52
A
ASN
53
n
54
ASN
53
A
GLY
54
n
55
GLY
54
A
ALA
55
n
56
ALA
55
A
TYR
56
n
57
TYR
56
A
LEU
57
n
58
LEU
57
A
LEU
58
n
59
LEU
58
A
HIS
59
n
60
HIS
59
A
ILE
60
n
61
ILE
60
A
ALA
61
n
62
ALA
61
A
PHE
62
n
63
PHE
62
A
ARG
63
n
64
ARG
63
A
LEU
64
n
65
LEU
64
A
GLN
65
n
66
GLN
65
A
GLU
66
n
67
GLU
66
A
ASN
67
n
68
ASN
67
A
VAL
68
n
69
VAL
68
A
ILE
69
n
70
ILE
69
A
ILE
70
n
71
ILE
70
A
PHE
71
n
72
PHE
71
A
ASN
72
n
73
ASN
72
A
SER
73
n
74
SER
73
A
ARG
74
n
75
ARG
74
A
GLN
75
n
76
GLN
75
A
PRO
76
n
77
PRO
76
A
ASP
77
n
78
ASP
77
A
GLY
78
n
79
GLY
78
A
PRO
79
n
80
PRO
79
A
TRP
80
n
81
TRP
80
A
LEU
81
n
82
LEU
81
A
VAL
82
n
83
VAL
82
A
GLU
83
n
84
GLU
83
A
GLN
84
n
85
GLN
84
A
ARG
85
n
86
ARG
85
A
VAL
86
n
87
VAL
86
A
SER
87
n
88
SER
87
A
ASP
88
n
89
ASP
88
A
VAL
89
n
90
VAL
89
A
ALA
90
n
91
ALA
90
A
ASN
91
n
92
ASN
91
A
GLN
92
n
93
GLN
92
A
PHE
93
n
94
PHE
93
A
ALA
94
n
95
ALA
94
A
GLY
95
n
96
GLY
95
A
ILE
96
n
97
ILE
96
A
ASP
97
n
98
ASP
97
A
GLY
98
n
99
GLY
98
A
LYS
99
n
100
LYS
99
A
ALA
100
n
101
ALA
100
A
MET
101
n
102
MET
101
A
VAL
102
n
103
VAL
102
A
THR
103
n
104
THR
103
A
VAL
104
n
105
VAL
104
A
PHE
105
n
106
PHE
105
A
ASP
106
n
107
ASP
106
A
HIS
107
n
108
HIS
107
A
GLY
108
n
109
GLY
108
A
ASP
109
n
110
ASP
109
A
LYS
110
n
111
LYS
110
A
TYR
111
n
112
TYR
111
A
GLN
112
n
113
GLN
112
A
VAL
113
n
114
VAL
113
A
VAL
114
n
115
VAL
114
A
ILE
115
n
116
ILE
115
A
ASN
116
n
117
ASN
116
A
GLU
117
n
118
GLU
117
A
LYS
118
n
119
LYS
118
A
THR
119
n
120
THR
119
A
VAL
120
n
121
VAL
120
A
ILE
121
n
122
ILE
121
A
GLN
122
n
123
GLN
122
A
TYR
123
n
124
TYR
123
A
THR
124
n
125
THR
124
A
LYS
125
n
126
LYS
125
A
GLN
126
n
127
GLN
126
A
ILE
127
n
128
ILE
127
A
SER
128
n
129
SER
128
A
GLY
129
n
130
GLY
129
A
LEU
130
n
131
LEU
130
A
THR
131
n
132
THR
131
A
SER
132
n
133
SER
132
A
SER
133
n
134
SER
133
A
LEU
134
n
135
LEU
134
A
SER
135
n
136
SER
135
A
TYR
136
n
137
TYR
136
A
ASN
137
n
138
ASN
137
A
ALA
138
n
139
ALA
138
A
THR
139
n
140
THR
139
A
GLU
140
n
141
GLU
140
A
GLU
141
n
142
GLU
141
A
THR
142
n
143
THR
142
A
SER
143
n
144
SER
143
A
ILE
144
n
145
ILE
144
A
PHE
145
n
146
PHE
145
A
SER
146
n
147
SER
146
A
THR
147
n
148
THR
147
A
VAL
148
n
149
VAL
148
A
VAL
149
n
150
VAL
149
A
GLU
150
n
151
GLU
150
A
ALA
151
n
152
ALA
151
A
VAL
152
n
153
VAL
152
A
THR
153
n
154
THR
153
A
TYR
154
n
155
TYR
154
A
THR
155
n
156
THR
155
A
GLY
156
n
157
GLY
156
A
LEU
157
n
158
LEU
157
A
ALA
158
n
159
ALA
158
A
MET
0
n
1
MET
0
B
GLN
1
n
2
GLN
1
B
GLY
2
n
3
GLY
2
B
VAL
3
n
4
VAL
3
B
ASN
4
n
5
ASN
4
B
ILE
5
n
6
ILE
5
B
TYR
6
n
7
TYR
6
B
ASN
7
n
8
ASN
7
B
ILE
8
n
9
ILE
8
B
SER
9
n
10
SER
9
B
ALA
10
n
11
ALA
10
B
GLY
11
n
12
GLY
11
B
THR
12
n
13
THR
12
B
SER
13
n
14
SER
13
B
VAL
14
n
15
VAL
14
B
ASP
15
n
16
ASP
15
B
LEU
16
n
17
LEU
16
B
ALA
17
n
18
ALA
17
B
ALA
18
n
19
ALA
18
B
PRO
19
n
20
PRO
19
B
VAL
20
n
21
VAL
20
B
THR
21
n
22
THR
21
B
THR
22
n
23
THR
22
B
GLY
23
n
24
GLY
23
B
ASP
24
n
25
ASP
24
B
ILE
25
n
26
ILE
25
B
VAL
26
n
27
VAL
26
B
THR
27
n
28
THR
27
B
PHE
28
n
29
PHE
28
B
PHE
29
n
30
PHE
29
B
SER
30
n
31
SER
30
B
SER
31
n
32
SER
31
B
ALA
32
n
33
ALA
32
B
LEU
33
n
34
LEU
33
B
ASN
34
n
35
ASN
34
B
LEU
35
n
36
LEU
35
B
ASN
36
n
37
ASN
36
B
ALA
37
n
38
ALA
37
B
GLY
38
n
39
GLY
38
B
ALA
39
n
40
ALA
39
B
GLY
40
n
41
GLY
40
B
ASN
41
n
42
ASN
41
B
PRO
42
n
43
PRO
42
B
ASN
43
n
44
ASN
43
B
ASN
44
n
45
ASN
44
B
THR
45
n
46
THR
45
B
THR
46
n
47
THR
46
B
LEU
47
n
48
LEU
47
B
ASN
48
n
49
ASN
48
B
LEU
49
n
50
LEU
49
B
PHE
50
n
51
PHE
50
B
ALA
51
n
52
ALA
51
B
GLU
52
n
53
GLU
52
B
ASN
53
n
54
ASN
53
B
GLY
54
n
55
GLY
54
B
ALA
55
n
56
ALA
55
B
TYR
56
n
57
TYR
56
B
LEU
57
n
58
LEU
57
B
LEU
58
n
59
LEU
58
B
HIS
59
n
60
HIS
59
B
ILE
60
n
61
ILE
60
B
ALA
61
n
62
ALA
61
B
PHE
62
n
63
PHE
62
B
ARG
63
n
64
ARG
63
B
LEU
64
n
65
LEU
64
B
GLN
65
n
66
GLN
65
B
GLU
66
n
67
GLU
66
B
ASN
67
n
68
ASN
67
B
VAL
68
n
69
VAL
68
B
ILE
69
n
70
ILE
69
B
ILE
70
n
71
ILE
70
B
PHE
71
n
72
PHE
71
B
ASN
72
n
73
ASN
72
B
SER
73
n
74
SER
73
B
ARG
74
n
75
ARG
74
B
GLN
75
n
76
GLN
75
B
PRO
76
n
77
PRO
76
B
ASP
77
n
78
ASP
77
B
GLY
78
n
79
GLY
78
B
PRO
79
n
80
PRO
79
B
TRP
80
n
81
TRP
80
B
LEU
81
n
82
LEU
81
B
VAL
82
n
83
VAL
82
B
GLU
83
n
84
GLU
83
B
GLN
84
n
85
GLN
84
B
ARG
85
n
86
ARG
85
B
VAL
86
n
87
VAL
86
B
SER
87
n
88
SER
87
B
ASP
88
n
89
ASP
88
B
VAL
89
n
90
VAL
89
B
ALA
90
n
91
ALA
90
B
ASN
91
n
92
ASN
91
B
GLN
92
n
93
GLN
92
B
PHE
93
n
94
PHE
93
B
ALA
94
n
95
ALA
94
B
GLY
95
n
96
GLY
95
B
ILE
96
n
97
ILE
96
B
ASP
97
n
98
ASP
97
B
GLY
98
n
99
GLY
98
B
LYS
99
n
100
LYS
99
B
ALA
100
n
101
ALA
100
B
MET
101
n
102
MET
101
B
VAL
102
n
103
VAL
102
B
THR
103
n
104
THR
103
B
VAL
104
n
105
VAL
104
B
PHE
105
n
106
PHE
105
B
ASP
106
n
107
ASP
106
B
HIS
107
n
108
HIS
107
B
GLY
108
n
109
GLY
108
B
ASP
109
n
110
ASP
109
B
LYS
110
n
111
LYS
110
B
TYR
111
n
112
TYR
111
B
GLN
112
n
113
GLN
112
B
VAL
113
n
114
VAL
113
B
VAL
114
n
115
VAL
114
B
ILE
115
n
116
ILE
115
B
ASN
116
n
117
ASN
116
B
GLU
117
n
118
GLU
117
B
LYS
118
n
119
LYS
118
B
THR
119
n
120
THR
119
B
VAL
120
n
121
VAL
120
B
ILE
121
n
122
ILE
121
B
GLN
122
n
123
GLN
122
B
TYR
123
n
124
TYR
123
B
THR
124
n
125
THR
124
B
LYS
125
n
126
LYS
125
B
GLN
126
n
127
GLN
126
B
ILE
127
n
128
ILE
127
B
SER
128
n
129
SER
128
B
GLY
129
n
130
GLY
129
B
LEU
130
n
131
LEU
130
B
THR
131
n
132
THR
131
B
SER
132
n
133
SER
132
B
SER
133
n
134
SER
133
B
LEU
134
n
135
LEU
134
B
SER
135
n
136
SER
135
B
TYR
136
n
137
TYR
136
B
ASN
137
n
138
ASN
137
B
ALA
138
n
139
ALA
138
B
THR
139
n
140
THR
139
B
GLU
140
n
141
GLU
140
B
GLU
141
n
142
GLU
141
B
THR
142
n
143
THR
142
B
SER
143
n
144
SER
143
B
ILE
144
n
145
ILE
144
B
PHE
145
n
146
PHE
145
B
SER
146
n
147
SER
146
B
THR
147
n
148
THR
147
B
VAL
148
n
149
VAL
148
B
VAL
149
n
150
VAL
149
B
GLU
150
n
151
GLU
150
B
ALA
151
n
152
ALA
151
B
VAL
152
n
153
VAL
152
B
THR
153
n
154
THR
153
B
TYR
154
n
155
TYR
154
B
THR
155
n
156
THR
155
B
GLY
156
n
157
GLY
156
B
LEU
157
n
158
LEU
157
B
ALA
158
n
159
ALA
158
B
author_and_software_defined_assembly
PISA
2
dimeric
1830
-13
12840
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
8
A
N
ILE
9
A
O
VAL
149
A
O
VAL
150
A
O
GLU
150
A
O
GLU
151
A
N
PHE
29
A
N
PHE
30
A
N
VAL
26
A
N
VAL
27
A
O
VAL
104
A
O
VAL
105
A
N
THR
103
A
N
THR
104
A
O
VAL
114
A
O
VAL
115
A
N
ILE
115
A
N
ILE
116
A
O
LYS
118
A
O
LYS
119
A
N
VAL
20
A
N
VAL
21
A
O
THR
131
A
O
THR
132
A
O
SER
133
A
O
SER
134
A
N
PHE
50
A
N
PHE
51
A
N
THR
45
A
N
THR
46
A
O
PHE
62
A
O
PHE
63
A
N
ALA
61
A
N
ALA
62
A
O
ILE
70
A
O
ILE
71
A
N
PHE
71
A
N
PHE
72
A
O
GLN
84
A
O
GLN
85
B
N
TYR
6
B
N
TYR
7
B
O
ALA
151
B
O
ALA
152
B
O
GLU
150
B
O
GLU
151
B
N
PHE
29
B
N
PHE
30
B
N
SER
30
B
N
SER
31
B
O
ALA
100
B
O
ALA
101
B
N
THR
103
B
N
THR
104
B
O
VAL
114
B
O
VAL
115
B
N
TYR
111
B
N
TYR
112
B
O
TYR
123
B
O
TYR
124
B
N
LEU
16
B
N
LEU
17
B
O
SER
132
B
O
SER
133
B
O
SER
133
B
O
SER
134
B
N
PHE
50
B
N
PHE
51
B
N
THR
45
B
N
THR
46
B
O
PHE
62
B
O
PHE
63
B
N
ALA
61
B
N
ALA
62
B
O
ILE
70
B
O
ILE
71
B
N
PHE
71
B
N
PHE
72
B
O
GLN
84
B
O
GLN
85
1
A
THR
21
-128.19
-166.82
1
A
LEU
81
-92.92
-151.74
1
A
ASP
88
67.28
76.54
1
A
ASN
116
62.19
-109.89
1
B
LEU
81
-97.98
-149.24
1
B
ASP
88
63.66
76.54
1
B
ASN
116
62.00
-106.17
1
B
ALA
138
178.16
167.86
protein_rep.param
tfg.param
ion.param
water_rep.param
22.775
8.960
0.000
0.000
-1.110
0.000
-7.850
0.221
0.188
2.000
50.000
1060
25298
24896
4.200
98.400
0.861
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
2ZGL
Engh & Huber
59.083
0.26
0.21
5.00
0.19
0.13
2.000
50.000
264
2753
75
0
2414
0.005
1.428
0.241
2.030
798
21
0.233
2.070
1180
21
0.293
0.223
2.110
9
1177
1186
21
0.242
0.194
2.150
53
1123
1176
21
0.269
0.198
2.190
53
1139
1192
21
0.236
0.169
2.240
53
1149
1202
21
0.254
0.201
2.290
61
1110
1171
21
0.221
0.172
2.350
58
1140
1198
21
0.243
0.175
2.410
57
1130
1187
21
0.248
0.201
2.480
62
1123
1185
21
0.236
0.190
2.560
41
1154
1195
21
0.229
0.193
2.650
57
1135
1192
21
0.251
0.184
2.760
62
1138
1200
21
0.304
0.208
2.880
70
1127
1197
21
0.248
0.215
3.040
62
1141
1203
21
0.181
0.176
3.230
55
1154
1209
21
0.248
0.201
3.480
65
1155
1220
21
0.230
0.179
3.830
43
1169
1212
21
0.172
0.160
4.380
65
1167
1232
21
0.149
0.139
5.520
65
1178
1243
21
0.231
0.233
50.000
69
1249
1318
21
1.99
50.000
3M3C
25298
0.068
2.365
1
13.700
3.700
99.900
0.243
1.99
2.02
2455
1.235
3.40
98.90
0.281
2.02
2.06
2434
2.234
3.70
100.00
0.345
2.06
2.10
2432
8.834
3.70
99.90
0.220
2.10
2.14
2462
1.548
3.80
100.00
0.184
2.14
2.19
2469
1.496
3.80
100.00
0.180
2.19
2.24
2449
1.840
3.80
100.00
0.250
2.24
2.30
2430
5.098
3.80
100.00
0.136
2.30
2.36
2465
1.511
3.80
100.00
0.118
2.36
2.43
2483
1.422
3.80
100.00
0.130
2.43
2.51
2442
1.912
3.80
100.00
0.106
2.51
2.60
2467
1.468
3.80
100.00
0.112
2.60
2.70
2464
2.641
3.80
100.00
0.078
2.70
2.82
2460
1.526
3.80
100.00
0.065
2.82
2.97
2478
1.528
3.80
100.00
0.054
2.97
3.16
2478
1.666
3.80
100.00
0.047
3.16
3.40
2450
1.926
3.80
100.00
0.048
3.40
3.74
2484
2.791
3.80
100.00
0.044
3.74
4.29
2506
2.570
3.80
100.00
0.035
4.29
5.40
2505
1.982
3.80
100.00
0.037
5.40
50.00
2561
2.199
3.60
99.60
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
phasing
R. J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
other
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns.csb.yale.edu/v1.1/
CNS
package
data extraction
PDB
sw-help@rcsb.rutgers.edu
September 10, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.004
data collection
ADSC
Quantum
Crystal Structure of Agrocybe aegerita lectin AAL complexed with p-Nitrophenyl TF disaccharide
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
LEU
64
A
LEU
65
HELX_P
A
GLU
66
A
GLU
67
5
1
3
A
ASP
88
A
ASP
89
HELX_P
A
ALA
94
A
ALA
95
1
2
7
B
ASP
88
B
ASP
89
HELX_P
B
ALA
94
B
ALA
95
1
3
7
covale
1.436
one
A
NPO
242
E
OH
NPO
1_555
C
A2G
1
C
C1
A2G
1_555
covale
1.434
one
B
NPO
242
F
OH
NPO
1_555
D
A2G
1
D
C1
A2G
1_555
covale
1.436
both
C
A2G
1
C
O3
A2G
1_555
C
GAL
2
C
C1
GAL
1_555
covale
1.434
both
D
A2G
1
D
O3
A2G
1_555
D
GAL
2
D
C1
GAL
1_555
HYDROLASE
galectin, AAL, Thomsen-Friedenreich disaccharide, Apoptosis, Hydrolase, Lectin, Nuclease, Gal-BATA-1, 3-GalNAc-ALPHA-1-p-Nitrophenyl
A
ASN
41
A
ASN
42
1
A
PRO
42
A
PRO
43
0.13
B
ASN
41
B
ASN
42
1
B
PRO
42
B
PRO
43
0.02
B
GLY
78
B
GLY
79
1
B
PRO
79
B
PRO
80
0.00
ATLE_AGRAE
UNP
1
1
Q6WY08
QGVNIYNISAGTSVDLAAPVTTGDIVTFFSSALNLNAGAGNPNNTTLNLFAENGAYLLHIAFRLQENVIIFNSRQPDGPW
LVEQRVSDVANQFAGIDGKAMVTVFDHGDKYQVVINEKTVIQYTKQISGLTLSLSYNATEETSIFSTVVEAVTYTGLA
1
158
3M3C
1
158
Q6WY08
A
1
2
159
1
158
3M3C
1
158
Q6WY08
B
1
2
159
1
expression tag
MET
0
3M3C
A
Q6WY08
UNP
1
1
LEU
SEE REMARK 999
SER
132
3M3C
A
Q6WY08
UNP
132
133
2
expression tag
MET
0
3M3C
B
Q6WY08
UNP
1
2
LEU
SEE REMARK 999
SER
132
3M3C
B
Q6WY08
UNP
132
133
6
6
6
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
2
A
GLY
3
A
SER
9
A
SER
10
A
VAL
148
A
VAL
149
A
THR
155
A
THR
156
A
ILE
25
A
ILE
26
A
SER
30
A
SER
31
A
ALA
100
A
ALA
101
A
ASP
106
A
ASP
107
A
LYS
110
A
LYS
111
A
ILE
115
A
ILE
116
A
LYS
118
A
LYS
119
A
THR
124
A
THR
125
A
THR
12
A
THR
13
A
VAL
20
A
VAL
21
A
THR
131
A
THR
132
A
ASN
137
A
ASN
138
A
THR
45
A
THR
46
A
PHE
50
A
PHE
51
A
TYR
56
A
TYR
57
A
ARG
63
A
ARG
64
A
VAL
68
A
VAL
69
A
ARG
74
A
ARG
75
A
GLN
84
A
GLN
85
A
SER
87
A
SER
88
B
GLY
2
B
GLY
3
B
SER
9
B
SER
10
B
VAL
148
B
VAL
149
B
THR
155
B
THR
156
B
ILE
25
B
ILE
26
B
SER
30
B
SER
31
B
ALA
100
B
ALA
101
B
ASP
106
B
ASP
107
B
LYS
110
B
LYS
111
B
ILE
115
B
ILE
116
B
LYS
118
B
LYS
119
B
THR
124
B
THR
125
B
THR
12
B
THR
13
B
VAL
20
B
VAL
21
B
THR
131
B
THR
132
B
ASN
137
B
ASN
138
B
THR
45
B
THR
46
B
PHE
50
B
PHE
51
B
TYR
56
B
TYR
57
B
ARG
63
B
ARG
64
B
VAL
68
B
VAL
69
B
ARG
74
B
ARG
75
B
GLN
84
B
GLN
85
B
SER
87
B
SER
88
19
P 21 21 21