0.009371 0.000000 0.000000 0.000000 0.008376 0.000000 0.000000 0.000000 0.015706 0.00000 0.00000 0.00000 Rajan, R. Taneja, B. Mondragon, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 106.717 119.390 63.670 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing UK Structure STRUE6 2005 0969-2126 18 829 838 10.1016/j.str.2010.03.006 20637419 Structures of minimal catalytic fragments of topoisomerase v reveals conformational changes relevant for DNA binding. 2010 10.2210/pdb3m7g/pdb pdb_00003m7g 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 78 1 CCD 2006-03-05 RAYONIX MX-225 SINGLE WAVELENGTH M x-ray 1 0.97872 1.0 5ID-B APS 0.97872 SYNCHROTRON APS BEAMLINE 5ID-B 31468.398 Topoisomerase V N-terminal 31kDa fragment (Topo-31) 1 man polymer 18.015 water 29 nat water no no MALVYDAEFVGSEREFEEERETFLKGVKAYDGVLATRYLMERSSSAKNDEELLELHQNFILLTGSYACSIDPTEDRYQNV IVRGVNFDERVQRLSTGGSPARYAIVYRRGWRAIAKALDIDEEDVPAIEVRAVKRNPLQPALYRILVRYGRVDLMPVTVD EVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVEGEKDPESSGIYSLWSRVVVNIEYDE RTAKRHVKRRDRLLEELYEHLEELSERYL MALVYDAEFVGSEREFEEERETFLKGVKAYDGVLATRYLMERSSSAKNDEELLELHQNFILLTGSYACSIDPTEDRYQNV IVRGVNFDERVQRLSTGGSPARYAIVYRRGWRAIAKALDIDEEDVPAIEVRAVKRNPLQPALYRILVRYGRVDLMPVTVD EVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVEGEKDPESSGIYSLWSRVVVNIEYDE RTAKRHVKRRDRLLEELYEHLEELSERYL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n AV19 sample MK1436, top5, Topoisomerase V 190192 Methanopyrus kandleri 562 Escherichia coli BL21 Rosetta (DE3) pET15b plasmid 1 3.23 61.87 VAPOR DIFFUSION, SITTING DROP 5.5 0.1M Sodium citrate pH 5.5, 23% PEG 6000, VAPOR DIFFUSION, SITTING DROP, temperature 295K 295 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Data collection Refinement description Data collection Database references Refinement description 1 0 2010-08-04 1 1 2011-07-13 1 2 2019-07-17 1 3 2023-09-06 _software.classification _software.name _software.version _database_2.pdbx_DOI _database_2.pdbx_database_accession Structure of the N-terminal 44 kDa fragment of topoisomerase V in the presence of guanidium hydrochloride Structure of the N-terminal 44 kDa fragment of topoisomerase V in the presence of guanidium hydrochloride Structure of the N-terminal 44 kDa fragment of topoisomerase V in the presence of dioxane. RCSB Y RCSB 2010-03-16 REL REL HOH water 2CSB Topoisomerase domain of topo-61 strcture (2CSB) PDB experimental model HOH 1 2 HOH HOH 270 A HOH 2 2 HOH HOH 271 A HOH 3 2 HOH HOH 272 A HOH 4 2 HOH HOH 273 A HOH 5 2 HOH HOH 274 A HOH 6 2 HOH HOH 275 A HOH 7 2 HOH HOH 276 A HOH 8 2 HOH HOH 277 A HOH 9 2 HOH HOH 278 A HOH 10 2 HOH HOH 279 A HOH 11 2 HOH HOH 280 A HOH 12 2 HOH HOH 281 A HOH 13 2 HOH HOH 282 A HOH 14 2 HOH HOH 283 A HOH 15 2 HOH HOH 284 A HOH 16 2 HOH HOH 285 A HOH 17 2 HOH HOH 286 A HOH 18 2 HOH HOH 287 A HOH 19 2 HOH HOH 288 A HOH 20 2 HOH HOH 289 A HOH 21 2 HOH HOH 290 A HOH 22 2 HOH HOH 291 A HOH 23 2 HOH HOH 292 A HOH 24 2 HOH HOH 293 A HOH 25 2 HOH HOH 294 A HOH 26 2 HOH HOH 295 A HOH 27 2 HOH HOH 296 A HOH 28 2 HOH HOH 297 A HOH 29 2 HOH HOH 298 A n 1 1 A n 2 2 A LEU 3 n 3 LEU 3 A VAL 4 n 4 VAL 4 A TYR 5 n 5 TYR 5 A ASP 6 n 6 ASP 6 A ALA 7 n 7 ALA 7 A GLU 8 n 8 GLU 8 A PHE 9 n 9 PHE 9 A VAL 10 n 10 VAL 10 A GLY 11 n 11 GLY 11 A SER 12 n 12 SER 12 A GLU 13 n 13 GLU 13 A ARG 14 n 14 ARG 14 A GLU 15 n 15 GLU 15 A PHE 16 n 16 PHE 16 A GLU 17 n 17 GLU 17 A GLU 18 n 18 GLU 18 A GLU 19 n 19 GLU 19 A ARG 20 n 20 ARG 20 A GLU 21 n 21 GLU 21 A THR 22 n 22 THR 22 A PHE 23 n 23 PHE 23 A LEU 24 n 24 LEU 24 A LYS 25 n 25 LYS 25 A GLY 26 n 26 GLY 26 A VAL 27 n 27 VAL 27 A LYS 28 n 28 LYS 28 A ALA 29 n 29 ALA 29 A TYR 30 n 30 TYR 30 A ASP 31 n 31 ASP 31 A GLY 32 n 32 GLY 32 A VAL 33 n 33 VAL 33 A LEU 34 n 34 LEU 34 A ALA 35 n 35 ALA 35 A THR 36 n 36 THR 36 A ARG 37 n 37 ARG 37 A TYR 38 n 38 TYR 38 A LEU 39 n 39 LEU 39 A MET 40 n 40 MET 40 A GLU 41 n 41 GLU 41 A ARG 42 n 42 ARG 42 A SER 43 n 43 SER 43 A SER 44 n 44 SER 44 A SER 45 n 45 SER 45 A ALA 46 n 46 ALA 46 A LYS 47 n 47 LYS 47 A ASN 48 n 48 ASN 48 A ASP 49 n 49 ASP 49 A GLU 50 n 50 GLU 50 A GLU 51 n 51 GLU 51 A LEU 52 n 52 LEU 52 A LEU 53 n 53 LEU 53 A GLU 54 n 54 GLU 54 A LEU 55 n 55 LEU 55 A HIS 56 n 56 HIS 56 A GLN 57 n 57 GLN 57 A ASN 58 n 58 ASN 58 A PHE 59 n 59 PHE 59 A ILE 60 n 60 ILE 60 A LEU 61 n 61 LEU 61 A LEU 62 n 62 LEU 62 A THR 63 n 63 THR 63 A GLY 64 n 64 GLY 64 A SER 65 n 65 SER 65 A TYR 66 n 66 TYR 66 A ALA 67 n 67 ALA 67 A CYS 68 n 68 CYS 68 A SER 69 n 69 SER 69 A ILE 70 n 70 ILE 70 A ASP 71 n 71 ASP 71 A PRO 72 n 72 PRO 72 A THR 73 n 73 THR 73 A GLU 74 n 74 GLU 74 A ASP 75 n 75 ASP 75 A ARG 76 n 76 ARG 76 A TYR 77 n 77 TYR 77 A GLN 78 n 78 GLN 78 A ASN 79 n 79 ASN 79 A VAL 80 n 80 VAL 80 A ILE 81 n 81 ILE 81 A VAL 82 n 82 VAL 82 A ARG 83 n 83 ARG 83 A GLY 84 n 84 GLY 84 A VAL 85 n 85 VAL 85 A ASN 86 n 86 ASN 86 A PHE 87 n 87 PHE 87 A ASP 88 n 88 ASP 88 A GLU 89 n 89 GLU 89 A ARG 90 n 90 ARG 90 A VAL 91 n 91 VAL 91 A GLN 92 n 92 GLN 92 A ARG 93 n 93 ARG 93 A LEU 94 n 94 LEU 94 A SER 95 n 95 SER 95 A THR 96 n 96 THR 96 A GLY 97 n 97 GLY 97 A GLY 98 n 98 GLY 98 A SER 99 n 99 SER 99 A PRO 100 n 100 PRO 100 A ALA 101 n 101 ALA 101 A ARG 102 n 102 ARG 102 A TYR 103 n 103 TYR 103 A ALA 104 n 104 ALA 104 A ILE 105 n 105 ILE 105 A VAL 106 n 106 VAL 106 A TYR 107 n 107 TYR 107 A ARG 108 n 108 ARG 108 A ARG 109 n 109 ARG 109 A GLY 110 n 110 GLY 110 A TRP 111 n 111 TRP 111 A ARG 112 n 112 ARG 112 A ALA 113 n 113 ALA 113 A ILE 114 n 114 ILE 114 A ALA 115 n 115 ALA 115 A LYS 116 n 116 LYS 116 A ALA 117 n 117 ALA 117 A LEU 118 n 118 LEU 118 A ASP 119 n 119 ASP 119 A ILE 120 n 120 ILE 120 A ASP 121 n 121 ASP 121 A GLU 122 n 122 GLU 122 A GLU 123 n 123 GLU 123 A ASP 124 n 124 ASP 124 A VAL 125 n 125 VAL 125 A PRO 126 n 126 PRO 126 A ALA 127 n 127 ALA 127 A ILE 128 n 128 ILE 128 A GLU 129 n 129 GLU 129 A VAL 130 n 130 VAL 130 A ARG 131 n 131 ARG 131 A ALA 132 n 132 ALA 132 A VAL 133 n 133 VAL 133 A LYS 134 n 134 LYS 134 A ARG 135 n 135 ARG 135 A ASN 136 n 136 ASN 136 A PRO 137 n 137 PRO 137 A LEU 138 n 138 LEU 138 A GLN 139 n 139 GLN 139 A PRO 140 n 140 PRO 140 A ALA 141 n 141 ALA 141 A LEU 142 n 142 LEU 142 A TYR 143 n 143 TYR 143 A ARG 144 n 144 ARG 144 A ILE 145 n 145 ILE 145 A LEU 146 n 146 LEU 146 A VAL 147 n 147 VAL 147 A ARG 148 n 148 ARG 148 A TYR 149 n 149 TYR 149 A GLY 150 n 150 GLY 150 A ARG 151 n 151 ARG 151 A VAL 152 n 152 VAL 152 A ASP 153 n 153 ASP 153 A LEU 154 n 154 LEU 154 A MET 155 n 155 MET 155 A PRO 156 n 156 PRO 156 A VAL 157 n 157 VAL 157 A THR 158 n 158 THR 158 A VAL 159 n 159 VAL 159 A ASP 160 n 160 ASP 160 A GLU 161 n 161 GLU 161 A VAL 162 n 162 VAL 162 A PRO 163 n 163 PRO 163 A PRO 164 n 164 PRO 164 A GLU 165 n 165 GLU 165 A MET 166 n 166 MET 166 A ALA 167 n 167 ALA 167 A GLY 168 n 168 GLY 168 A GLU 169 n 169 GLU 169 A PHE 170 n 170 PHE 170 A GLU 171 n 171 GLU 171 A ARG 172 n 172 ARG 172 A LEU 173 n 173 LEU 173 A ILE 174 n 174 ILE 174 A GLU 175 n 175 GLU 175 A ARG 176 n 176 ARG 176 A TYR 177 n 177 TYR 177 A ASP 178 n 178 ASP 178 A VAL 179 n 179 VAL 179 A PRO 180 n 180 PRO 180 A ILE 181 n 181 ILE 181 A ASP 182 n 182 ASP 182 A GLU 183 n 183 GLU 183 A LYS 184 n 184 LYS 184 A GLU 185 n 185 GLU 185 A GLU 186 n 186 GLU 186 A ARG 187 n 187 ARG 187 A ILE 188 n 188 ILE 188 A LEU 189 n 189 LEU 189 A GLU 190 n 190 GLU 190 A ILE 191 n 191 ILE 191 A LEU 192 n 192 LEU 192 A ARG 193 n 193 ARG 193 A GLU 194 n 194 GLU 194 A ASN 195 n 195 ASN 195 A PRO 196 n 196 PRO 196 A TRP 197 n 197 TRP 197 A THR 198 n 198 THR 198 A PRO 199 n 199 PRO 199 A HIS 200 n 200 HIS 200 A ASP 201 n 201 ASP 201 A GLU 202 n 202 GLU 202 A ILE 203 n 203 ILE 203 A ALA 204 n 204 ALA 204 A ARG 205 n 205 ARG 205 A ARG 206 n 206 ARG 206 A LEU 207 n 207 LEU 207 A GLY 208 n 208 GLY 208 A LEU 209 n 209 LEU 209 A SER 210 n 210 SER 210 A VAL 211 n 211 VAL 211 A SER 212 n 212 SER 212 A GLU 213 n 213 GLU 213 A VAL 214 n 214 VAL 214 A GLU 215 n 215 GLU 215 A GLY 216 n 216 GLY 216 A GLU 217 n 217 GLU 217 A LYS 218 n 218 LYS 218 A ASP 219 n 219 ASP 219 A PRO 220 n 220 PRO 220 A GLU 221 n 221 GLU 221 A SER 222 n 222 SER 222 A SER 223 n 223 SER 223 A GLY 224 n 224 GLY 224 A ILE 225 n 225 ILE 225 A TYR 226 n 226 TYR 226 A SER 227 n 227 SER 227 A LEU 228 n 228 LEU 228 A TRP 229 n 229 TRP 229 A SER 230 n 230 SER 230 A ARG 231 n 231 ARG 231 A VAL 232 n 232 VAL 232 A VAL 233 n 233 VAL 233 A VAL 234 n 234 VAL 234 A ASN 235 n 235 ASN 235 A ILE 236 n 236 ILE 236 A GLU 237 n 237 GLU 237 A TYR 238 n 238 TYR 238 A ASP 239 n 239 ASP 239 A GLU 240 n 240 GLU 240 A ARG 241 n 241 ARG 241 A THR 242 n 242 THR 242 A ALA 243 n 243 ALA 243 A LYS 244 n 244 LYS 244 A ARG 245 n 245 ARG 245 A HIS 246 n 246 HIS 246 A VAL 247 n 247 VAL 247 A LYS 248 n 248 LYS 248 A ARG 249 n 249 ARG 249 A ARG 250 n 250 ARG 250 A ASP 251 n 251 ASP 251 A ARG 252 n 252 ARG 252 A LEU 253 n 253 LEU 253 A LEU 254 n 254 LEU 254 A GLU 255 n 255 GLU 255 A GLU 256 n 256 GLU 256 A LEU 257 n 257 LEU 257 A TYR 258 n 258 TYR 258 A GLU 259 n 259 GLU 259 A HIS 260 n 260 HIS 260 A LEU 261 n 261 LEU 261 A GLU 262 n 262 GLU 262 A GLU 263 n 263 GLU 263 A LEU 264 n 264 LEU 264 A SER 265 n 265 SER 265 A GLU 266 n 266 GLU 266 A ARG 267 n 267 ARG 267 A TYR 268 n 268 TYR 268 A LEU 269 n 269 LEU 269 A 0.0044 0.0241 0.0040 0.2756 0.1567 0.1301 0.0439 0.0070 0.0258 0.0000 -0.0271 -0.0188 0.0164 -0.0009 -0.0169 0.0966 0.0030 -0.0034 -0.0086 0.0026 -0.0394 refined 37.0640 17.2540 1.3770 X-RAY DIFFRACTION -1 -1 X-RAY DIFFRACTION 1 author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 8 A N GLU 8 A O GLN 78 A O GLN 78 A N VAL 82 A N VAL 82 A O VAL 85 A O VAL 85 1 A MET 1 A MET 1 1 Y 1 A ALA 2 A ALA 2 1 Y 1 A ASP 75 -160.95 24.57 1 A VAL 125 27.69 74.20 1 A VAL 130 -142.38 45.35 1 A ALA 132 -39.90 133.27 1 A VAL 133 -111.89 -72.08 1 A ALA 167 -142.38 -114.62 1 A ARG 176 -36.05 -28.67 1 A ASP 178 49.81 13.06 1 A GLU 221 -101.52 53.96 68.261 3.74 0.00 0.00 -2.25 0.00 -1.49 0.957 0.933 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.24772 0.20004 0.20250 2.40 79.56 821 15419 5.1 99.61 16.113 0.178 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.230 0.80 0.80 1.20 Topoisomerase domain of topo-61 strcture (2CSB) MAXIMUM LIKELIHOOD MASK 2.40 79.56 29 2232 0 0 2203 0.015 0.022 2244 1.419 1.980 3036 5.466 5.000 266 37.259 22.984 124 17.634 15.000 404 19.025 15.000 30 0.093 0.200 328 0.005 0.020 1742 0.217 0.200 1089 0.311 0.200 1531 0.166 0.200 85 0.191 0.200 28 0.240 0.200 5 1.815 1.500 1381 3.044 2.000 2163 3.597 3.000 987 5.461 4.500 873 0.311 0.243 2.462 55 1136 20 99.83 2.4 79.79 3M7G 16304 16259 0.117 0.108 1 8.2 6.9 94.2 0.689 2.4 2.53 2.2 0.637 6.9 95.7 refinement REFMAC 5.2.0019 refinement PHENIX (phenix.refine: 1.5_2) data reduction XDS data scaling SCALA phasing AMoRE N Structure of topoisomerase domain of topoisomerase V protein 1 N N 2 N N A SER 12 A SER 12 HELX_P A ARG 42 A ARG 42 1 1 31 A SER 45 A SER 45 HELX_P A SER 69 A SER 69 1 2 25 A PHE 87 A PHE 87 HELX_P A ARG 93 A ARG 93 1 3 7 A SER 99 A SER 99 HELX_P A VAL 106 A VAL 106 1 4 8 A ARG 109 A ARG 109 HELX_P A LEU 118 A LEU 118 1 5 10 A ASP 121 A ASP 121 HELX_P A VAL 125 A VAL 125 5 6 5 A GLN 139 A GLN 139 HELX_P A TYR 149 A TYR 149 1 7 11 A THR 158 A THR 158 HELX_P A VAL 162 A VAL 162 5 8 5 A PRO 163 A PRO 163 HELX_P A ALA 167 A ALA 167 5 9 5 A PHE 170 A PHE 170 HELX_P A ARG 176 A ARG 176 1 10 7 A ASP 182 A ASP 182 HELX_P A ASN 195 A ASN 195 1 11 14 A PRO 199 A PRO 199 HELX_P A GLY 208 A GLY 208 1 12 10 A SER 210 A SER 210 HELX_P A GLY 216 A GLY 216 1 13 7 A GLY 224 A GLY 224 HELX_P A VAL 234 A VAL 234 1 14 11 A ASP 239 A ASP 239 HELX_P A LEU 269 A LEU 269 1 15 31 ISOMERASE topoisomerase V, type IC topoisomerase, isomerase, minimal catalytic fragment of topoisomerase V Q977W1_METKA UNP 1 1 Q977W1 MALVYDAEFVGSEREFEEERETFLKGVKAYDGVLATRYLMERSSSAKNDEELLELHQNFILLTGSYACSIDPTEDRYQNV IVRGVNFDERVQRLSTGGSPARYAIVYRRGWRAIAKALDIDEEDVPAIEVRAVKRNPLQPALYRILVRYGRVDLMPVTVD EVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVEGEKDPESSGIYSLWSRVVVNIEYDE RTAKRHVKRRDRLLEELYEHLEELSERYL 1 269 3M7G 1 269 Q977W1 A 1 1 269 3 anti-parallel anti-parallel A TYR 5 A TYR 5 A PHE 9 A PHE 9 A TYR 77 A TYR 77 A VAL 82 A VAL 82 A VAL 85 A VAL 85 A ASN 86 A ASN 86 20 C 2 2 21